Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007825.1 Hibiscus syriacus cultivar Beakdansim tig00110163_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2082551
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 5 of 11
Found at i:747243 original size:24 final size:25
Alignment explanation
Indices: 747197--747244 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
747187 TTTAATATTT
* * *
747197 AATTGTAAATATAATATTTTAATAA
1 AATTGTAAAAATAATAATATAATAA
747222 AATT-TAAAAATAATAATATAATA
1 AATTGTAAAAATAATAATATAATA
747245 TTATATTTGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (25 bp):
AATTGTAAAAATAATAATATAATAA
Found at i:747263 original size:17 final size:16
Alignment explanation
Indices: 747239--747281 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
747229 AAATAATAAT
*
747239 ATAATATTATATTTGA
1 ATAATATTATATTTAA
747255 ATGAATATTA-ATTTAA
1 AT-AATATTATATTTAA
*
747271 ATAATTTTATA
1 ATAATATTATA
747282 AATGATATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 6 0.26
16 10 0.43
17 7 0.30
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.49
Consensus pattern (16 bp):
ATAATATTATATTTAA
Found at i:755937 original size:20 final size:20
Alignment explanation
Indices: 755914--755978 Score: 68
Period size: 20 Copynumber: 3.5 Consensus size: 20
755904 AGGGGGAACA
755914 GATTCCCCCTGGGGGGTATC
1 GATTCCCCCTGGGGGGTATC
* *
755934 GATT-CCCC----GGGAATA
1 GATTCCCCCTGGGGGGTATC
755949 GATTTCCCCCTGGGGGGTATC
1 GA-TTCCCCCTGGGGGGTATC
755970 GATTCCCCC
1 GATTCCCCC
755979 CTAAATGAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 12
0.69 0.08 0.24
Matches are distributed among these distances:
15 7 0.20
16 2 0.06
17 4 0.11
19 4 0.11
20 11 0.31
21 7 0.20
ACGTcount: A:0.14, C:0.32, G:0.29, T:0.25
Consensus pattern (20 bp):
GATTCCCCCTGGGGGGTATC
Found at i:755964 original size:35 final size:35
Alignment explanation
Indices: 755907--755977 Score: 124
Period size: 36 Copynumber: 2.0 Consensus size: 35
755897 TATGTGCAGG
755907 GGGAACAGATTCCCCCTGGGGGGTATCGATTCCCC
1 GGGAACAGATTCCCCCTGGGGGGTATCGATTCCCC
*
755942 GGGAATAGATTTCCCCCTGGGGGGTATCGATTCCCC
1 GGGAACAGA-TTCCCCCTGGGGGGTATCGATTCCCC
755978 CCTAAATGAA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 8 0.24
36 26 0.76
ACGTcount: A:0.17, C:0.30, G:0.31, T:0.23
Consensus pattern (35 bp):
GGGAACAGATTCCCCCTGGGGGGTATCGATTCCCC
Found at i:770449 original size:22 final size:22
Alignment explanation
Indices: 770421--770464 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
770411 TCTCATTATG
*
770421 GGCTGACTGAACAAGTTGATCA
1 GGCTGACTAAACAAGTTGATCA
770443 GGCTGACTAAACAAGTTGATCA
1 GGCTGACTAAACAAGTTGATCA
770465 AGTTGACAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (22 bp):
GGCTGACTAAACAAGTTGATCA
Found at i:770471 original size:22 final size:22
Alignment explanation
Indices: 770422--770471 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
770412 CTCATTATGG
* *
770422 GCTGACTGAACAAGTTGATCAG
1 GCTGACTAAACAAGTTGATCAA
770444 GCTGACTAAACAAGTTGATCAA
1 GCTGACTAAACAAGTTGATCAA
*
770466 GTTGAC
1 GCTGAC
770472 AGCCTGACTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (22 bp):
GCTGACTAAACAAGTTGATCAA
Found at i:771284 original size:17 final size:18
Alignment explanation
Indices: 771243--771281 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
771233 ATTATATTAC
771243 TAAAATA-TTAAATAAAG
1 TAAAATACTTAAATAAAG
*
771260 TAAAATACTTAAATAAAT
1 TAAAATACTTAAATAAAG
771278 TAAA
1 TAAA
771282 TACATAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (18 bp):
TAAAATACTTAAATAAAG
Found at i:775945 original size:2 final size:2
Alignment explanation
Indices: 775938--775963 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
775928 TTAGATTGTG
775938 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
775964 CACGAGCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:776695 original size:18 final size:19
Alignment explanation
Indices: 776642--776693 Score: 79
Period size: 18 Copynumber: 2.8 Consensus size: 19
776632 TATACATTGG
* *
776642 GTTATAAATATGAAAATAA
1 GTTATGAATATGAAAATGA
776661 G-TATGAATATGAAAATGA
1 GTTATGAATATGAAAATGA
776679 GTTATGAATATGAAA
1 GTTATGAATATGAAA
776694 TGTGAAAACA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 16 0.53
19 14 0.47
ACGTcount: A:0.52, C:0.00, G:0.17, T:0.31
Consensus pattern (19 bp):
GTTATGAATATGAAAATGA
Found at i:785818 original size:23 final size:23
Alignment explanation
Indices: 785766--785810 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
785756 TTATCCCATA
*
785766 AAATTATAAATAGTAAAATATTG
1 AAATTAAAAATAGTAAAATATTG
785789 AATATTAAAAATA-TAAAATATT
1 AA-ATTAAAAATAGTAAAATATT
785811 TTAAATTATC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (23 bp):
AAATTAAAAATAGTAAAATATTG
Found at i:786252 original size:18 final size:18
Alignment explanation
Indices: 786210--786254 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
786200 AAGTAAAAAG
* *
786210 CTACTTTAATAAAGTTTT
1 CTACTTTTATAAAGTTCT
* *
786228 TTGCTTTTATAAAGTTCT
1 CTACTTTTATAAAGTTCT
786246 CTACTTTTA
1 CTACTTTTA
786255 ATCAAACTAG
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.27, C:0.13, G:0.07, T:0.53
Consensus pattern (18 bp):
CTACTTTTATAAAGTTCT
Found at i:797633 original size:116 final size:115
Alignment explanation
Indices: 797451--797660 Score: 267
Period size: 116 Copynumber: 1.8 Consensus size: 115
797441 AATTGGCAAT
* ** * * * *
797451 GGATGTTACTTGTTATGTTGACCAGGTTCATTTCATATCTAAAATATCATACTGAACGGGACATG
1 GGATATTACTTGTTATGTTGACCAGGTTCATCCCATATCTAAAACATCAAACTAAAAGGGACATG
*
797516 AGGTGTAAAATTCATGATAGCCATTACCTAACCAATTCTTGAATAGACAAC
66 AGCTGT-AAATTCATGATAGCCATTACCTAACCAATTCTTGAATAGACAAC
* * * *
797567 GGATATTACTTGTTATGTTGGCCAGGTTCATCCCATTTCTAGAACATCAAACTAAAAGGGATATG
1 GGATATTACTTGTTATGTTGACCAGGTTCATCCCATATCTAAAACATCAAACTAAAAGGGACATG
** * *
797632 AGCTGTGGATTCATGATGGCTATTACCTA
66 AGCTGTAAATTCATGATAGCCATTACCTA
797661 TCAAAACGAA
Statistics
Matches: 78, Mismatches: 16, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
115 19 0.24
116 59 0.76
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.32
Consensus pattern (115 bp):
GGATATTACTTGTTATGTTGACCAGGTTCATCCCATATCTAAAACATCAAACTAAAAGGGACATG
AGCTGTAAATTCATGATAGCCATTACCTAACCAATTCTTGAATAGACAAC
Found at i:798929 original size:26 final size:23
Alignment explanation
Indices: 798900--798961 Score: 79
Period size: 23 Copynumber: 2.6 Consensus size: 23
798890 AAAGAGCTAT
*
798900 TAAATCTCTTTTAATTAAAGATATAA
1 TAAATCTCTTTTAA-TAAA-AGA-AA
*
798926 TAAATCTCTTCTAATAAAAGAAA
1 TAAATCTCTTTTAATAAAAGAAA
798949 TAAATCTCTTTTA
1 TAAATCTCTTTTA
798962 TTTTTATCCT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
23 14 0.42
24 2 0.06
25 4 0.12
26 13 0.39
ACGTcount: A:0.45, C:0.11, G:0.03, T:0.40
Consensus pattern (23 bp):
TAAATCTCTTTTAATAAAAGAAA
Found at i:798954 original size:23 final size:26
Alignment explanation
Indices: 798884--798958 Score: 84
Period size: 26 Copynumber: 3.0 Consensus size: 26
798874 AATTTTTATC
* * *
798884 CTAATAAAAGAGCTATTAAATCTCTT
1 CTAATTAAAGAGATAATAAATCTCTT
* *
798910 TTAATTAAAGATATAATAAATCTCTT
1 CTAATTAAAGAGATAATAAATCTCTT
798936 CTAA-TAAA-AGA-AATAAATCTCTT
1 CTAATTAAAGAGATAATAAATCTCTT
798959 TTATTTTTAT
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
23 12 0.29
24 2 0.05
25 4 0.10
26 24 0.57
ACGTcount: A:0.47, C:0.12, G:0.05, T:0.36
Consensus pattern (26 bp):
CTAATTAAAGAGATAATAAATCTCTT
Found at i:803031 original size:20 final size:20
Alignment explanation
Indices: 803006--803045 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
802996 GCGGTACCTG
803006 CACCGCGTTATATGTAATTA
1 CACCGCGTTATATGTAATTA
803026 CACCGCGTTATATGTAATTA
1 CACCGCGTTATATGTAATTA
803046 TTATATAGCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (20 bp):
CACCGCGTTATATGTAATTA
Found at i:803316 original size:29 final size:29
Alignment explanation
Indices: 803271--803349 Score: 142
Period size: 29 Copynumber: 2.7 Consensus size: 29
803261 TACTGCTATG
803271 GGTGTTAGATC-AGTAAATATAATCTAACC
1 GGTGTTAGATCGA-TAAATATAATCTAACC
803300 GGTGTTAGATCGATAAATATAATCTAACC
1 GGTGTTAGATCGATAAATATAATCTAACC
803329 GGTGTTAGATCGATAAATATA
1 GGTGTTAGATCGATAAATATA
803350 CCGATCATCG
Statistics
Matches: 49, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
29 48 0.98
30 1 0.02
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (29 bp):
GGTGTTAGATCGATAAATATAATCTAACC
Found at i:805064 original size:23 final size:25
Alignment explanation
Indices: 805024--805069 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
805014 TGATCATGTT
*
805024 TCATTAATGGCAATTTTTGAATTTC
1 TCATTAATGGCAATTTTTAAATTTC
*
805049 TCATTAATTG-AA-TTTTAAATT
1 TCATTAATGGCAATTTTTAAATT
805070 CAGTTATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 8 0.42
24 2 0.11
25 9 0.47
ACGTcount: A:0.33, C:0.09, G:0.09, T:0.50
Consensus pattern (25 bp):
TCATTAATGGCAATTTTTAAATTTC
Found at i:811036 original size:23 final size:24
Alignment explanation
Indices: 811010--811070 Score: 72
Period size: 23 Copynumber: 2.6 Consensus size: 24
811000 CTCATATAAA
*
811010 TGCACCGAAGTGCCA-CATAGAAT
1 TGCACCGTAGTGCCAGCATAGAAT
* *
811033 TGCACCGTAGTG-AAGCGTAGAAT
1 TGCACCGTAGTGCCAGCATAGAAT
*
811056 CGCACCGTAGTGCCA
1 TGCACCGTAGTGCCA
811071 TATAATAATG
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
22 1 0.03
23 29 0.94
24 1 0.03
ACGTcount: A:0.30, C:0.26, G:0.26, T:0.18
Consensus pattern (24 bp):
TGCACCGTAGTGCCAGCATAGAAT
Found at i:811257 original size:103 final size:103
Alignment explanation
Indices: 811086--811303 Score: 382
Period size: 103 Copynumber: 2.1 Consensus size: 103
811076 TAATGTCCAT
* *
811086 AAGGACCACATATAATTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATAATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
*
811151 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATATCCCG
* * *
811189 AAGGACCACATATCATTCCTTAATAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATAATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
811254 GACTTCACACATGTTCCAAAGAATACATATATATCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATATCCCG
811292 AAGGACCACATA
1 AAGGACCACATA
811304 GACCCTCGAC
Statistics
Matches: 109, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
103 109 1.00
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.26
Consensus pattern (103 bp):
AAGGACCACATATAATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
GACTTCACACATGTTCCAAAGAATACATATATATCCCG
Found at i:812509 original size:21 final size:21
Alignment explanation
Indices: 812483--812526 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
812473 TTTTTATTCG
* *
812483 CTTGAAGGGGTATCGGTTCCC
1 CTTGAAGGGGTACCGATTCCC
*
812504 CTTGAATGGGTACCGATTCCC
1 CTTGAAGGGGTACCGATTCCC
812525 CT
1 CT
812527 AGCCCAGAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.16, C:0.27, G:0.27, T:0.30
Consensus pattern (21 bp):
CTTGAAGGGGTACCGATTCCC
Found at i:820637 original size:29 final size:30
Alignment explanation
Indices: 820590--820650 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 30
820580 TTTTGGTCCT
**
820590 TAAACTTTTCAAAGTTTATACTTTAGCCAC
1 TAAACTTTTCAAAACTTATACTTTAGCCAC
* *
820620 TAAAC-TTTCAAAACTTATATTTTAGTCAC
1 TAAACTTTTCAAAACTTATACTTTAGCCAC
820649 TA
1 TA
820651 GCCAAAATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
29 22 0.81
30 5 0.19
ACGTcount: A:0.36, C:0.18, G:0.05, T:0.41
Consensus pattern (30 bp):
TAAACTTTTCAAAACTTATACTTTAGCCAC
Found at i:824765 original size:14 final size:13
Alignment explanation
Indices: 824748--824778 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
824738 AAAGGAGAAG
*
824748 AAAAAGAAAGTAA
1 AAAAAGAAAATAA
824761 AAAAAGAAAATAA
1 AAAAAGAAAATAA
824774 AAAAA
1 AAAAA
824779 TAACAAAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.84, C:0.00, G:0.10, T:0.06
Consensus pattern (13 bp):
AAAAAGAAAATAA
Found at i:824787 original size:25 final size:25
Alignment explanation
Indices: 824759--824814 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 25
824749 AAAAGAAAGT
*
824759 AAAAAAAGAAAAT-AAAAAAATAAC
1 AAAAAAAAAAAATAAAAAAAATAAC
**
824783 AAAAACCAAAAATAAAAAAAATAAC
1 AAAAAAAAAAAATAAAAAAAATAAC
824808 AAAAAAA
1 AAAAAAA
824815 TATAATATGT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
24 10 0.38
25 16 0.62
ACGTcount: A:0.84, C:0.07, G:0.02, T:0.07
Consensus pattern (25 bp):
AAAAAAAAAAAATAAAAAAAATAAC
Found at i:825812 original size:7 final size:7
Alignment explanation
Indices: 825802--825827 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
825792 TATTATAGAC
825802 TTTTAAA
1 TTTTAAA
825809 TTTTAAA
1 TTTTAAA
825816 TTTTAAA
1 TTTTAAA
825823 TTTTA
1 TTTTA
825828 GAAATTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (7 bp):
TTTTAAA
Found at i:825960 original size:21 final size:23
Alignment explanation
Indices: 825936--825989 Score: 76
Period size: 21 Copynumber: 2.3 Consensus size: 23
825926 AATTATATAA
825936 ATATTAACTTA-AAATAT-TTTT
1 ATATTAACTTATAAATATATTTT
825957 ATATTAACTTATTAAATATATTTT
1 ATATTAACTTA-TAAATATATTTT
825981 ACTATTAAC
1 A-TATTAAC
825990 CTAATTTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
21 11 0.38
23 6 0.21
24 5 0.17
25 7 0.24
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (23 bp):
ATATTAACTTATAAATATATTTT
Found at i:825977 original size:25 final size:27
Alignment explanation
Indices: 825944--826007 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 27
825934 AAATATTAAC
*
825944 TTAAAATATTTTTA-TATTAA-CTTA-
1 TTAAAATATTTTTACTATTAACCTAAT
825968 TT-AAATATATTTTACTATTAACCTAAT
1 TTAAAATAT-TTTTACTATTAACCTAAT
825995 TTAAAAATATTTT
1 TT-AAAATATTTT
826008 ATTTTTATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
23 6 0.18
24 7 0.21
25 6 0.18
26 3 0.09
27 2 0.06
28 3 0.09
29 6 0.18
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (27 bp):
TTAAAATATTTTTACTATTAACCTAAT
Found at i:826005 original size:27 final size:24
Alignment explanation
Indices: 825946--826009 Score: 74
Period size: 27 Copynumber: 2.5 Consensus size: 24
825936 ATATTAACTT
*
825946 AAAATATTTTTATATTAACTTATTA
1 AAAATA-TTTTATATTAACTAATTA
*
825971 AATATATTTTACTATTAACCTAATTTA
1 AAAATATTTTA-TATTAA-CTAA-TTA
825998 AAAATATTTTAT
1 AAAATATTTTAT
826010 TTTTATTTTC
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
24 5 0.15
25 11 0.33
26 4 0.12
27 13 0.39
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (24 bp):
AAAATATTTTATATTAACTAATTA
Found at i:826048 original size:25 final size:27
Alignment explanation
Indices: 825991--826049 Score: 77
Period size: 25 Copynumber: 2.3 Consensus size: 27
825981 ACTATTAACC
* *
825991 TAATTTAAAAATATTTTATTTTTATTT
1 TAATTTAAAAATATTATATATTTATTT
*
826018 TCATTTAAAAATA-TATA-ATTTATTT
1 TAATTTAAAAATATTATATATTTATTT
826043 TAATTTA
1 TAATTTA
826050 TTAAAAGTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 13 0.46
26 3 0.11
27 12 0.43
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.58
Consensus pattern (27 bp):
TAATTTAAAAATATTATATATTTATTT
Found at i:826462 original size:18 final size:19
Alignment explanation
Indices: 826435--826475 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
826425 AATTTATATA
826435 TTTATATATT-TTTTCTTT
1 TTTATATATTATTTTCTTT
*
826453 TTTATTTATTATTTTCTTT
1 TTTATATATTATTTTCTTT
826472 TTTA
1 TTTA
826476 CAATACATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (19 bp):
TTTATATATTATTTTCTTT
Found at i:826755 original size:15 final size:15
Alignment explanation
Indices: 826745--826831 Score: 138
Period size: 15 Copynumber: 5.8 Consensus size: 15
826735 TAATAAGGTT
826745 ATTTATTATAAAATA
1 ATTTATTATAAAATA
826760 ATTTATTATAAAATA
1 ATTTATTATAAAATA
*
826775 ATTTATTTTAAAATA
1 ATTTATTATAAAATA
826790 ATTTATTATAAAATA
1 ATTTATTATAAAATA
* *
826805 AATTATTTTAAAATA
1 ATTTATTATAAAATA
*
826820 AATTATTATAAA
1 ATTTATTATAAA
826832 TATGGATTGA
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 67 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATTTATTATAAAATA
Found at i:826781 original size:30 final size:30
Alignment explanation
Indices: 826745--826874 Score: 147
Period size: 30 Copynumber: 4.2 Consensus size: 30
826735 TAATAAGGTT
*
826745 ATTTATTATAAAATAATTTATTATAAAATA
1 ATTTATTTTAAAATAATTTATTATAAAATA
826775 ATTTATTTTAAAATAATTTATTATAAAATA
1 ATTTATTTTAAAATAATTTATTATAAAATA
* *
826805 AATTATTTTAAAATAAATTATTATAAATATGGA
1 ATTTATTTTAAAATAATTTATTATAAA-AT--A
* *
826838 TTGATTTATTTT-AAATTATTTATT-TTAAATA
1 ---ATTTATTTTAAAATAATTTATTATAAAATA
826869 ATTTAT
1 ATTTAT
826875 AGTATGGATT
Statistics
Matches: 87, Mismatches: 7, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
28 6 0.07
30 54 0.62
31 3 0.03
33 3 0.03
34 3 0.03
35 10 0.11
36 8 0.09
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (30 bp):
ATTTATTTTAAAATAATTTATTATAAAATA
Found at i:826860 original size:14 final size:14
Alignment explanation
Indices: 826841--826874 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
826831 ATATGGATTG
*
826841 ATTTATTTTAAATT
1 ATTTATTTTAAATA
826855 ATTTATTTTAAATA
1 ATTTATTTTAAATA
826869 ATTTAT
1 ATTTAT
826875 AGTATGGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (14 bp):
ATTTATTTTAAATA
Found at i:826895 original size:22 final size:22
Alignment explanation
Indices: 826877--826919 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
826867 TAATTTATAG
826877 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
826899 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
826920 TAATTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:826945 original size:18 final size:18
Alignment explanation
Indices: 826922--826969 Score: 51
Period size: 22 Copynumber: 2.4 Consensus size: 18
826912 ATTTTAAATA
*
826922 ATTTATTAGTATGGATTG
1 ATTTATTAATATGGATTG
826940 ATTTATTTTAAAATATGGATTG
1 ATTTA--TT--AATATGGATTG
826962 ATTTATTA
1 ATTTATTA
826970 TTGTAGTTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 8
0.74 0.03 0.24
Matches are distributed among these distances:
18 6 0.24
20 4 0.16
22 15 0.60
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (18 bp):
ATTTATTAATATGGATTG
Found at i:826947 original size:54 final size:53
Alignment explanation
Indices: 826855--826968 Score: 219
Period size: 54 Copynumber: 2.1 Consensus size: 53
826845 ATTTTAAATT
826855 ATTTATTTTAAATAATTTATAGTATGGATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATAGTATGGATTGATTTATTTTAAAATATGGATTG
826908 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTA-TAGTATGGATTGATTTATTTTAAAATATGGATTG
826962 ATTTATT
1 ATTTATT
826969 ATTGTAGTTG
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
53 19 0.32
54 41 0.68
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (53 bp):
ATTTATTTTAAATAATTTATAGTATGGATTGATTTATTTTAAAATATGGATTG
Found at i:826999 original size:80 final size:80
Alignment explanation
Indices: 826899--827048 Score: 282
Period size: 80 Copynumber: 1.9 Consensus size: 80
826889 TATTTTAAAA
* *
826899 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGAT
1 TATGAATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGAATTGAT
826964 TTATTATTGTAGTTG
66 TTATTATTGTAGTTG
826979 TATGAATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGAATTGAT
1 TATGAATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGAATTGAT
827044 TTATT
66 TTATT
827049 TTAAATAATT
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
80 68 1.00
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (80 bp):
TATGAATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGAATTGAT
TTATTATTGTAGTTG
Found at i:827036 original size:22 final size:22
Alignment explanation
Indices: 827011--827053 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
827001 AATTTATTAG
*
827011 TATGGATTGATTTATTTTAAAA
1 TATGAATTGATTTATTTTAAAA
827033 TATGAATTGATTTATTTTAAA
1 TATGAATTGATTTATTTTAAA
827054 TAATTTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (22 bp):
TATGAATTGATTTATTTTAAAA
Found at i:827112 original size:31 final size:31
Alignment explanation
Indices: 827077--827137 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
827067 TAGTTGTATG
* * *
827077 AATTATTTAAATTTTAGTATTGTAAAACTAA
1 AATTATTTAAATCTCAGTATTGCAAAACTAA
827108 AATTATTTAAATCTCAGTATTGCAAAACTA
1 AATTATTTAAATCTCAGTATTGCAAAACTA
827138 TTTTAAGTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.44, C:0.08, G:0.07, T:0.41
Consensus pattern (31 bp):
AATTATTTAAATCTCAGTATTGCAAAACTAA
Found at i:827600 original size:21 final size:21
Alignment explanation
Indices: 827575--827618 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
827565 GAAAATGTTA
*
827575 AAAAATATTAATATTTTAAAT
1 AAAAATAATAATATTTTAAAT
*
827596 AAAAATAATAATATTTTAGAT
1 AAAAATAATAATATTTTAAAT
827617 AA
1 AA
827619 CACATTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (21 bp):
AAAAATAATAATATTTTAAAT
Found at i:828303 original size:18 final size:19
Alignment explanation
Indices: 828280--828326 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 19
828270 ATTTATTTAG
*
828280 AATTATAATTTTTTTG-CT
1 AATTATAATTGTTTTGTCT
828298 AATTAT-ATTGTTTTGTCT
1 AATTATAATTGTTTTGTCT
828316 ACAGTTATAAT
1 A-A-TTATAAT
828327 GGAAAACGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
17 8 0.33
18 9 0.38
19 1 0.04
20 4 0.17
21 2 0.08
ACGTcount: A:0.30, C:0.06, G:0.09, T:0.55
Consensus pattern (19 bp):
AATTATAATTGTTTTGTCT
Found at i:829996 original size:21 final size:21
Alignment explanation
Indices: 829966--830013 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
829956 GCAGGGGTAC
* *
829966 ATGCCCAGCCCTCCACTTCAT
1 ATGCCAAGCCCACCACTTCAT
* *
829987 ATGCCAAGCCCACCAGTTTAT
1 ATGCCAAGCCCACCACTTCAT
830008 ATGCCA
1 ATGCCA
830014 TCTCCGCAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.25, C:0.40, G:0.12, T:0.23
Consensus pattern (21 bp):
ATGCCAAGCCCACCACTTCAT
Found at i:830043 original size:21 final size:21
Alignment explanation
Indices: 830023--830102 Score: 117
Period size: 21 Copynumber: 3.8 Consensus size: 21
830013 ATCTCCGCAG
* *
830023 GGTTACATTCCGAGCCCG-CA
1 GGTTACATGCCTAGCCCGCCA
*
830043 GGGTTACATTCCTAGCCCGCCA
1 -GGTTACATGCCTAGCCCGCCA
830065 GGTTACATGCCTAGCCCGCCA
1 GGTTACATGCCTAGCCCGCCA
830086 GGTTACATGCCTAGCCC
1 GGTTACATGCCTAGCCC
830103 AGGGTTTTAT
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
21 54 0.96
22 2 0.04
ACGTcount: A:0.19, C:0.36, G:0.24, T:0.21
Consensus pattern (21 bp):
GGTTACATGCCTAGCCCGCCA
Found at i:830671 original size:33 final size:34
Alignment explanation
Indices: 830612--830708 Score: 133
Period size: 33 Copynumber: 2.9 Consensus size: 34
830602 TAAATGTTTT
*
830612 AAAATACAAATTATATTATTCGAAATTTAAAATA
1 AAAATAAAAATTATATTATTCGAAATTTAAAATA
* * *
830646 AAAATAAAAATAATATTATTC-AAATTTAAATTT
1 AAAATAAAAATTATATTATTCGAAATTTAAAATA
* *
830679 AAAATATAAATTATAGTATTCGAAATTTAA
1 AAAATAAAAATTATATTATTCGAAATTTAA
830709 CATTAAATTT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
33 28 0.51
34 27 0.49
ACGTcount: A:0.56, C:0.04, G:0.03, T:0.37
Consensus pattern (34 bp):
AAAATAAAAATTATATTATTCGAAATTTAAAATA
Found at i:830715 original size:34 final size:33
Alignment explanation
Indices: 830610--830715 Score: 133
Period size: 34 Copynumber: 3.2 Consensus size: 33
830600 GATAAATGTT
*
830610 TTAAAATACAAATTATATTATTCGAAATTTAAAA
1 TTAAAATAAAAATTATATTATTCGAAATTT-AAA
* *
830644 TAAAAATAAAAATAATATTATTC-AAATTTAAA
1 TTAAAATAAAAATTATATTATTCGAAATTTAAA
* *
830676 TTTAAAATATAAATTATAGTATTCGAAATTTAACA
1 -TTAAAATAAAAATTATATTATTCGAAATTTAA-A
830711 TTAAA
1 TTAAA
830716 TTTCAACTTA
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
32 3 0.05
33 25 0.40
34 33 0.53
35 1 0.02
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.38
Consensus pattern (33 bp):
TTAAAATAAAAATTATATTATTCGAAATTTAAA
Found at i:831544 original size:125 final size:126
Alignment explanation
Indices: 831094--831678 Score: 937
Period size: 125 Copynumber: 4.8 Consensus size: 126
831084 TTTAAGTTAT
* *
831094 TCCCCGAGGGACATGAGTGACATAATAGGGCAATTATAAT-TTCT-TGACGAAATAATGGAAGGC
1 TCCCCGAGGGACATAAGTGACATAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGGC
831157 GCGCCCCCGGGAACGCGCCTTCACGTGAATAGTGAAATAATAGGTACTG--ATATCTAGTG
66 GCGCCCCCGGGAACGCGCCTTCACGTGAATAGTGAAATAATAGGTACTGATATATCTAGTG
831216 TCCCCGAGGGACATGAA-TGACATAATAGGGCAATG--AATATTCTCTGACGAAATAATGGAAGG
1 TCCCCGAGGGACAT-AAGTGACATAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGG
831278 CGCGCCCCCGGGAACGCGCCTTCA-GTGAATAGTGAAATAATAGGTACTGATATATCTAGTG
65 CGCGCCCCCGGGAACGCGCCTTCACGTGAATAGTGAAATAATAGGTACTGATATATCTAGTG
*
831339 TCCCCGAGGGACATGAGTGAC--AATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGGC
1 TCCCCGAGGGACATAAGTGACATAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGGC
*
831402 GCGCCCCCGGGAACGCGCCTTCACGTGAATAGTGAAATAATATGTACTGATATAT-TAGTG
66 GCGCCCCCGGGAACGCGCCTTCACGTGAATAGTGAAATAATAGGTACTGATATATCTAGTG
831462 T-CCCGAGGGACATAAGTGACACTAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGG
1 TCCCCGAGGGACATAAGTGACA-TAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGG
831526 CGCGCCCCCGGGAACGCGCCTTCACGTGAATAGTG-AATAATAGGTACTGATATATCTAGTG
65 CGCGCCCCCGGGAACGCGCCTTCACGTGAATAGTGAAATAATAGGTACTGATATATCTAGTG
*
831587 T-CCCGAGGGACATGAA-TGACATAATAGGGCAATGAT-ATATT-TCT-CCG--A-AATGGAAGG
1 TCCCCGAGGGACAT-AAGTGACATAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGG
831644 CGCG-CCCCGGGAACGCG-CTTCACGTGAATAGTGAA
65 CGCGCCCCCGGGAACGCGCCTTCACGTGAATAGTGAA
831679 CCGATTATAG
Statistics
Matches: 441, Mismatches: 7, Indels: 35
0.91 0.01 0.07
Matches are distributed among these distances:
116 16 0.04
117 14 0.03
118 13 0.03
119 1 0.00
120 3 0.01
121 43 0.10
122 95 0.22
123 91 0.21
124 64 0.15
125 99 0.22
126 2 0.00
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (126 bp):
TCCCCGAGGGACATAAGTGACATAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGGC
GCGCCCCCGGGAACGCGCCTTCACGTGAATAGTGAAATAATAGGTACTGATATATCTAGTG
Found at i:834794 original size:12 final size:13
Alignment explanation
Indices: 834761--834798 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
834751 AAATACATAA
834761 ATATATTTAATAT
1 ATATATTTAATAT
*
834774 ATTTATTTAATAT
1 ATATATTTAATAT
834787 A-ATATTTAATAT
1 ATATATTTAATAT
834799 TATTAGTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 10 0.43
13 13 0.57
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
ATATATTTAATAT
Found at i:839402 original size:15 final size:15
Alignment explanation
Indices: 839384--839438 Score: 74
Period size: 15 Copynumber: 3.6 Consensus size: 15
839374 TAACCGGTTT
839384 CGGTTTTAAAAAAAC
1 CGGTTTTAAAAAAAC
*
839399 CGGTTTTTTAAAAAAC
1 CGG-TTTTAAAAAAAC
*
839415 CGGTTATAAAAAAAC
1 CGGTTTTAAAAAAAC
*
839430 CGATTTTAA
1 CGGTTTTAA
839439 TATTCCAGAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
15 20 0.59
16 14 0.41
ACGTcount: A:0.44, C:0.13, G:0.13, T:0.31
Consensus pattern (15 bp):
CGGTTTTAAAAAAAC
Found at i:839411 original size:16 final size:16
Alignment explanation
Indices: 839387--839436 Score: 66
Period size: 16 Copynumber: 3.2 Consensus size: 16
839377 CCGGTTTCGG
839387 TTTTAAAAAAACCGGT
1 TTTTAAAAAAACCGGT
*
839403 TTTTTAAAAAACCGG-
1 TTTTAAAAAAACCGGT
* *
839418 TTATAAAAAAACCGAT
1 TTTTAAAAAAACCGGT
839434 TTT
1 TTT
839437 AATATTCCAG
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
15 12 0.43
16 16 0.57
ACGTcount: A:0.44, C:0.12, G:0.10, T:0.34
Consensus pattern (16 bp):
TTTTAAAAAAACCGGT
Found at i:839856 original size:13 final size:13
Alignment explanation
Indices: 839835--839864 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
839825 AAGTTCGATA
839835 AATTCAAATACTT
1 AATTCAAATACTT
*
839848 AATTGAAATACTT
1 AATTCAAATACTT
839861 AATT
1 AATT
839865 AACTCAACAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.47, C:0.10, G:0.03, T:0.40
Consensus pattern (13 bp):
AATTCAAATACTT
Found at i:839971 original size:32 final size:33
Alignment explanation
Indices: 839875--839973 Score: 164
Period size: 33 Copynumber: 3.0 Consensus size: 33
839865 AACTCAACAT
* * *
839875 AATTAAAATACTTAAATACTTCCAAGTTTGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
839908 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
839941 AATTCAAATACTTAAAAACTT-CAAGTTCGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
839973 A
1 A
839974 TTGAAACAAA
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
32 12 0.19
33 51 0.81
ACGTcount: A:0.46, C:0.15, G:0.06, T:0.32
Consensus pattern (33 bp):
AATTCAAATACTTAAAAACTTCCAAGTTCGATA
Found at i:839992 original size:21 final size:21
Alignment explanation
Indices: 839968--840007 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
839958 ACTTCAAGTT
839968 CGATAATTGAAACAAAGTTTA
1 CGATAATTGAAACAAAGTTTA
*
839989 CGATAATTGAAATAAAGTT
1 CGATAATTGAAACAAAGTT
840008 ATAAAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.07, G:0.15, T:0.30
Consensus pattern (21 bp):
CGATAATTGAAACAAAGTTTA
Found at i:842326 original size:12 final size:12
Alignment explanation
Indices: 842309--842354 Score: 56
Period size: 12 Copynumber: 3.6 Consensus size: 12
842299 TTCGGATAAA
842309 AACCGGTTTTTT
1 AACCGGTTTTTT
842321 AACCGGTTTTTTT
1 AACCGG-TTTTTT
842334 CAAACCGGTTTTTT
1 --AACCGGTTTTTT
*
842348 ATCCGGT
1 AACCGGT
842355 AAAAAAACCA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
12 12 0.40
13 6 0.20
14 6 0.20
15 6 0.20
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.46
Consensus pattern (12 bp):
AACCGGTTTTTT
Found at i:842339 original size:15 final size:14
Alignment explanation
Indices: 842308--842347 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
842298 TTTCGGATAA
842308 AAACCGG-TTTTTT
1 AAACCGGTTTTTTT
842321 -AACCGGTTTTTTT
1 AAACCGGTTTTTTT
842334 CAAACCGGTTTTTT
1 -AAACCGGTTTTTT
842348 ATCCGGTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 6 0.25
13 6 0.25
15 12 0.50
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.47
Consensus pattern (14 bp):
AAACCGGTTTTTTT
Found at i:842472 original size:13 final size:13
Alignment explanation
Indices: 842454--842478 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
842444 CCAAAACCGG
842454 TTTCGGATATTTT
1 TTTCGGATATTTT
842467 TTTCGGATATTT
1 TTTCGGATATTT
842479 GGATTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (13 bp):
TTTCGGATATTTT
Found at i:847518 original size:31 final size:31
Alignment explanation
Indices: 847483--847545 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
847473 CGTATGTGCT
847483 TTGTCCTTGAATGAAATGATGGATTCCTTGC
1 TTGTCCTTGAATGAAATGATGGATTCCTTGC
847514 TTGTCCTTGAATGAAATGATGGATTCCTTGC
1 TTGTCCTTGAATGAAATGATGGATTCCTTGC
847545 T
1 T
847546 AGATGCAAGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.22, C:0.16, G:0.22, T:0.40
Consensus pattern (31 bp):
TTGTCCTTGAATGAAATGATGGATTCCTTGC
Found at i:866196 original size:103 final size:103
Alignment explanation
Indices: 866017--866229 Score: 390
Period size: 103 Copynumber: 2.1 Consensus size: 103
866007 GGGTCTACGC
866017 GGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
1 GGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
* *
866082 CCTTGGCATATGTATATGATTCTTAAGGAATGATATGT
66 CCCTAGCATATGTATATGATTCTTAAGGAATGATATGT
866120 GGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
1 GGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
*
866185 CCCTAGTATATGTATATGATTCTTAAGGAATGATATGT
66 CCCTAGCATATGTATATGATTCTTAAGGAATGATATGT
*
866223 AGTCCTT
1 GGTCCTT
866230 ATGGACATTA
Statistics
Matches: 106, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
103 106 1.00
ACGTcount: A:0.26, C:0.14, G:0.23, T:0.36
Consensus pattern (103 bp):
GGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
CCCTAGCATATGTATATGATTCTTAAGGAATGATATGT
Found at i:866279 original size:23 final size:23
Alignment explanation
Indices: 866245--866331 Score: 111
Period size: 23 Copynumber: 3.8 Consensus size: 23
866235 CATTATTATA
*
866245 TGGCACTACGGTGCAATTCTACG
1 TGGCACTCCGGTGCAATTCTACG
* *
866268 CGGCACTCCGGTGTAATTCTACG
1 TGGCACTCCGGTGCAATTCTACG
* *
866291 TGGCACTCCAGTGTAATTCTACG
1 TGGCACTCCGGTGCAATTCTACG
* *
866314 TGGCACTTCGGTTCAATT
1 TGGCACTCCGGTGCAATT
866332 ATATGAGCTG
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 55 1.00
ACGTcount: A:0.20, C:0.26, G:0.24, T:0.30
Consensus pattern (23 bp):
TGGCACTCCGGTGCAATTCTACG
Found at i:869562 original size:21 final size:21
Alignment explanation
Indices: 869536--869580 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
869526 GATTTCTGGG
* *
869536 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
869557 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
869578 CAA
1 CAA
869581 ACGAACAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:871447 original size:103 final size:103
Alignment explanation
Indices: 871263--871468 Score: 340
Period size: 103 Copynumber: 2.0 Consensus size: 103
871253 GGGTCTACGC
* *
871263 GGTCCTTCGGGACATATATGTATTCTTTGGAATATGTCTGAAGTCTGGTGAGACACATACTTGAT
1 GGTCATTCGGGACATATATGTATTCTTTGGAACATGTCTGAAGTCTGGTGAGACACATACTTGAT
* * *
871328 CCTTGGCATATGTATATGATTCTTAAGGAATCATATGT
66 CCCTAGCATATGTATATGATTATTAAGGAATCATATGT
*
871366 GGTCATTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
1 GGTCATTCGGGACATATATGTATTCTTTGGAACATGTCTGAAGTCTGGTGAGACACATACTTGAT
* *
871431 CCCTAGTATATGTATATGATTATTAAGGAATGATATGT
66 CCCTAGCATATGTATATGATTATTAAGGAATCATATGT
871469 AGTCCTTATG
Statistics
Matches: 95, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
103 95 1.00
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.36
Consensus pattern (103 bp):
GGTCATTCGGGACATATATGTATTCTTTGGAACATGTCTGAAGTCTGGTGAGACACATACTTGAT
CCCTAGCATATGTATATGATTATTAAGGAATCATATGT
Found at i:871525 original size:23 final size:23
Alignment explanation
Indices: 871492--871554 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
871482 ATTATTATAT
*
871492 GGCACTACGGTGTAATTCTACGC
1 GGCACTACGGTGCAATTCTACGC
* *
871515 GGCACTCCGGTGCAATTCTACGT
1 GGCACTACGGTGCAATTCTACGC
*
871538 GGCACTTCGGTGCAATT
1 GGCACTACGGTGCAATT
871555 ATATGAGCTG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.19, C:0.27, G:0.27, T:0.27
Consensus pattern (23 bp):
GGCACTACGGTGCAATTCTACGC
Found at i:875623 original size:20 final size:20
Alignment explanation
Indices: 875592--875644 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
875582 TGCATTTATT
875592 ATTACTTTTATCTAATATTAA
1 ATTAC-TTTATCTAATATTAA
* *
875613 ATTCCTTTATCCAATATTAA
1 ATTACTTTATCTAATATTAA
875633 ATTACTTTATCT
1 ATTACTTTATCT
875645 GAAAAAGTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 24 0.86
21 4 0.14
ACGTcount: A:0.34, C:0.15, G:0.00, T:0.51
Consensus pattern (20 bp):
ATTACTTTATCTAATATTAA
Found at i:876708 original size:31 final size:31
Alignment explanation
Indices: 876670--876763 Score: 120
Period size: 31 Copynumber: 3.0 Consensus size: 31
876660 CCCGAAAGAC
* *
876670 CAGTCCATAGAAT-CCGAAGAACCTAGGTAAT
1 CAGTCCATAG-ATCCCGAAGAACATAGGTAAA
876701 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
1 CAGTCCATA-GATCCCGAAGAACATAGGTAAA
* *
876732 CAATCCATATATCCCGAAGAACATAGGTAAA
1 CAGTCCATAGATCCCGAAGAACATAGGTAAA
876763 C
1 C
876764 CCTCGACCCT
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
30 1 0.02
31 54 0.96
32 1 0.02
ACGTcount: A:0.40, C:0.23, G:0.17, T:0.19
Consensus pattern (31 bp):
CAGTCCATAGATCCCGAAGAACATAGGTAAA
Found at i:885702 original size:2 final size:2
Alignment explanation
Indices: 885697--885727 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
885687 CAACACACAC
885697 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
885728 ACATTTTAGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:887131 original size:3 final size:3
Alignment explanation
Indices: 887125--887223 Score: 126
Period size: 3 Copynumber: 33.0 Consensus size: 3
887115 TTTATCCATT
* * **
887125 TTA TTA TTA TTA TTA TTA ATA TTA TTA TTA TCA TTA TTA ACA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
887173 TCA TTA TTA TTT TTA TTA TTA TTA TTA TTA TTA TTA TTT TTT TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
887221 TTA
1 TTA
887224 AATATATTAA
Statistics
Matches: 82, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 82 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:888610 original size:14 final size:14
Alignment explanation
Indices: 888579--888608 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
888569 AATTTAGTCA
888579 TTTATTTTATATGT
1 TTTATTTTATATGT
888593 TTTATTTTAT-TGT
1 TTTATTTTATATGT
888606 TTT
1 TTT
888609 TAAATATGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.17, C:0.00, G:0.07, T:0.77
Consensus pattern (14 bp):
TTTATTTTATATGT
Found at i:899983 original size:1 final size:1
Alignment explanation
Indices: 899977--900059 Score: 103
Period size: 1 Copynumber: 83.0 Consensus size: 1
899967 ATTATGCTTG
* * * * * *
899977 AAAAAAAAAAGAAAAAAGAAAAGAAAAAGAAAAAGAAAGAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
900042 AAAAAAAAAAAGAAAAAA
1 AAAAAAAAAAAAAAAAAA
900060 GAGGGGTCAA
Statistics
Matches: 68, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
1 68 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (1 bp):
A
Found at i:899998 original size:12 final size:11
Alignment explanation
Indices: 899976--900059 Score: 120
Period size: 10 Copynumber: 7.6 Consensus size: 11
899966 TATTATGCTT
899976 GAAAAAAAAAA
1 GAAAAAAAAAA
899987 GAAAAAAGAAAA
1 GAAAAAA-AAAA
899999 GAAAAAGAAAAA
1 GAAAAA-AAAAA
900011 GAAAGAAAAAAA
1 GAAA-AAAAAAA
900023 -AAAAAAAAAA
1 GAAAAAAAAAA
900033 -AAAAAAAAAA
1 GAAAAAAAAAA
900043 -AAAAAAAAAA
1 GAAAAAAAAAA
900053 GAAAAAA
1 GAAAAAA
900060 GAGGGGTCAA
Statistics
Matches: 69, Mismatches: 0, Indels: 8
0.90 0.00 0.10
Matches are distributed among these distances:
10 27 0.39
11 16 0.23
12 23 0.33
13 3 0.04
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (11 bp):
GAAAAAAAAAA
Found at i:901102 original size:52 final size:52
Alignment explanation
Indices: 901041--901365 Score: 528
Period size: 52 Copynumber: 6.2 Consensus size: 52
901031 GGAAAATCAT
*
901041 CAGAACATAGCATCTTCTGGAAGTGTTCTTTAAGTTATCTGATCTGGTTGGA
1 CAGAACATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGA
* *
901093 CAGAACATAGCATTTTCTGGAAATGTTCTTTGAGTTATCTGATCTGGTT-GA
1 CAGAACATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGA
*
901144 TCATAACATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGA
1 -CAGAACATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGA
*
901197 CAGAACATAGCATCTTCTAGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGA
1 CAGAACATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGA
*
901249 CAGAACATAGCATCTTCTAGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGA
1 CAGAACATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGA
* * * *
901301 CAGAACATAGTATTTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTAGA
1 CAGAACATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGA
901353 CAGAATCA-AGCAT
1 CAGAA-CATAGCAT
901366 TGAGTTTAGA
Statistics
Matches: 256, Mismatches: 14, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
51 2 0.01
52 250 0.98
53 4 0.02
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (52 bp):
CAGAACATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGA
Found at i:901454 original size:83 final size:83
Alignment explanation
Indices: 901315--901679 Score: 712
Period size: 83 Copynumber: 4.4 Consensus size: 83
901305 ACATAGTATT
901315 TTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTAGACAGAATCAAGCATTGAGTTTAGAAGAT
1 TTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTAGACAGAATCAAGCATTGAGTTTAGAAGAT
901380 GAATTTGCCAATAGCATC
66 GAATTTGCCAATAGCATC
901398 TTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTAGACAGAATCAAGCATTGAGTTTAGAAGAT
1 TTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTAGACAGAATCAAGCATTGAGTTTAGAAGAT
901463 GAATTTGCCAATAGCATC
66 GAATTTGCCAATAGCATC
901481 TTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTAGACAGAATCAAGCATTGAGTTTAGAAGAT
1 TTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTAGACAGAATCAAGCATTGAGTTTAGAAGAT
901546 GAATTTGCCAATAGCATC
66 GAATTTGCCAATAGCATC
901564 TTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTAGACAGAATCAAGCATTGAGTTTAGAAGAT
1 TTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTAGACAGAATCAAGCATTGAGTTTAGAAGAT
901629 GAATTTGCCAATAGCATC
66 GAATTTGCCAATAGCATC
* *
901647 TTCTGGAAGCGTTCTTTGAGTTATTTGATCTGA
1 TTCTGGAAGTGTTCTTTGAGTTATCTGATCTGA
901680 AGAAGTGCAT
Statistics
Matches: 280, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 280 1.00
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.36
Consensus pattern (83 bp):
TTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTAGACAGAATCAAGCATTGAGTTTAGAAGAT
GAATTTGCCAATAGCATC
Found at i:902435 original size:114 final size:114
Alignment explanation
Indices: 902235--903012 Score: 1224
Period size: 114 Copynumber: 6.8 Consensus size: 114
902225 CAAAGATTTG
* *
902235 AATTCATCAAATTGATGGATCATT-GTTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAA
1 AATTCATC-ACTTGATGGATCATTCTTTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAA
* * *
902299 GAAGGAAGAAAAAGTTCATAATGAGAAGAACTTGTTCGACCTTTTGTTTA
65 GAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTA
902349 AATTCATCACTTGATGGATCATTCTTTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAG
1 AATTCATCACTTGATGGATCATTCTTTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAG
*
902414 AAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTG
66 AAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTA
* * *
902463 AATTCATCAAATTGATGGATCA-TCGTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAA
1 AATTCATC-ACTTGATGGATCATTCTTTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAA
* * * *
902527 GAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTG
65 GAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTA
* * * * * *
902577 AATCCATCATTTGGTGGATCA-CCCTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAG
1 AATTCATCACTTGATGGATCATTCTTTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAG
*
902641 AAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGTTTA
66 AAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTA
*
902690 AATTCATCACTTGATGGATCATTCTTTTCCAGAAAAGGTTCATAATGAGAAGAACTCATCTGAAG
1 AATTCATCACTTGATGGATCATTCTTTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAG
*
902755 AAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGTTTA
66 AAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTA
902804 AATTCATCACTTGATGGATCATTCTTTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAG
1 AATTCATCACTTGATGGATCATTCTTTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAG
* *
902869 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTTG
66 AAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTA
* * * * *
902918 AATTCATCAGTTGATGGATCA-ACATTACCAG-GTAAAGTTCATAATGAGAAGAACTCATCTGAA
1 AATTCATCACTTGATGGATCATTCTTTTCCAGAG-AAGGTTCATAATGAGAAGAACTCATCTGAA
*
902981 GAAGGAAGAAAAAGTTCATAATGAGAAGAACT
65 GAAGGAAGAAGAAGTTCATAATGAGAAGAACT
903013 CATCAAGAGC
Statistics
Matches: 620, Mismatches: 40, Indels: 9
0.93 0.06 0.01
Matches are distributed among these distances:
112 1 0.00
113 194 0.31
114 413 0.67
115 12 0.02
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.29
Consensus pattern (114 bp):
AATTCATCACTTGATGGATCATTCTTTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAG
AAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTA
Found at i:902721 original size:227 final size:228
Alignment explanation
Indices: 902232--903012 Score: 1275
Period size: 227 Copynumber: 3.4 Consensus size: 228
902222 TAGCAAAGAT
* *
902232 TTGAATTCATCAAATTGATGGATCATTGTTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTG
1 TTGAATTCATCAAATTGATGGATCATCGTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTG
*
902297 AAGAAGGAAGAAAAAGTTCATAATGAGAAGAACTTGTTCGACCTTTTGTTTAAATTCATCACTTG
66 AAGAAGGAAGAAAAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGTTTAAATTCATCACTTG
902362 ATGGATCATTCTTTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAG
131 ATGGATCATTCTTTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAG
902427 TTCATAATGAGAAGAACTTGTTCAACCTTTTGC
196 TTCATAATGAGAAGAACTTGTTCAACCTTTTGC
902460 TTGAATTCATCAAATTGATGGATCATCGTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTG
1 TTGAATTCATCAAATTGATGGATCATCGTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTG
* * *** * * *
902525 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTGAATCCATCATTTG
66 AAGAAGGAAGAAAAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGTTTAAATTCATCACTTG
* * * *
902590 GTGGATCA-CCCTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAG
131 ATGGATCATTCTTTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAG
*
902654 TTCATAATGAGAAGAACTTGTTCAACCTTTTGT
196 TTCATAATGAGAAGAACTTGTTCAACCTTTTGC
* * *
902687 TTAAATTCATC-ACTTGATGGATCATTCTTTTCCAGA-AAAGGTTCATAATGAGAAGAACTCATC
1 TTGAATTCATCAAATTGATGGATCA-TCGTTTCCAGAGAAA-GTTCATAATGAGAAGAACTCATC
*
902750 TGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGTTTAAATTCATCACT
64 TGAAGAAGGAAGAAAAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGTTTAAATTCATCACT
902815 TGATGGATCATTCTTTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
129 TGATGGATCATTCTTTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
*
902880 AGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
194 AGTTCATAATGAGAAGAACTTGTTCAACCTTTTGC
* * * *
902915 TTGAATTCATC-AGTTGATGGATCAACATTACCAG-GTAAAGTTCATAATGAGAAGAACTCATCT
1 TTGAATTCATCAAATTGATGGATCATCGTTTCCAGAG-AAAGTTCATAATGAGAAGAACTCATCT
902978 GAAGAAGGAAGAAAAAGTTCATAATGAGAAGAACT
65 GAAGAAGGAAGAAAAAGTTCATAATGAGAAGAACT
903013 CATCAAGAGC
Statistics
Matches: 510, Mismatches: 38, Indels: 11
0.91 0.07 0.02
Matches are distributed among these distances:
226 15 0.03
227 260 0.51
228 235 0.46
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (228 bp):
TTGAATTCATCAAATTGATGGATCATCGTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTG
AAGAAGGAAGAAAAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGTTTAAATTCATCACTTG
ATGGATCATTCTTTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAG
TTCATAATGAGAAGAACTTGTTCAACCTTTTGC
Found at i:902873 original size:341 final size:341
Alignment explanation
Indices: 902246--903012 Score: 1322
Period size: 341 Copynumber: 2.2 Consensus size: 341
902236 ATTCATCAAA
*** *
902246 TTGATGGATCATTGTTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAAA
1 TTGATGGATCAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAAA
*
902311 AGTTCATAATGAGAAGAACTTGTTCGACCTTTTGTTTAAATTCATCACTTGATGGATCATTCTTT
66 AGTTCATAATGAGAAGAACTTGTTCAACCTTTTGTTTAAATTCATCACTTGATGGATCATTCTTT
*
902376 TCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAG
131 TCCAGAAAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAG
*
902441 AACTTGTTCAACCTTTTGCTTGAATTCATCAAATTGATGGATCATCGTTTCCAGAGAAAGTTCAT
196 AACTTGTTCAACCTTTTGCTTAAATTCATCAAATTGATGGATCATCGTTTCCAGAGAAAGTTCAT
902506 AATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTT
261 AATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTT
*
902571 TACCTGAATCCATCAT
326 TACCTGAATCCATCAG
* * * *
902587 TTGGTGGATCACCCTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
1 TTGATGGATCAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAAA
902652 AGTTCATAATGAGAAGAACTTGTTCAACCTTTTGTTTAAATTCATCACTTGATGGATCATTCTTT
66 AGTTCATAATGAGAAGAACTTGTTCAACCTTTTGTTTAAATTCATCACTTGATGGATCATTCTTT
902717 TCCAGAAAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAG
131 TCCAGAAAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAG
* * * *
902782 AACTTGTTCAACCTTTTGTTTAAATTCATC-ACTTGATGGATCATTCTTTTCCAGAGAAGGTTCA
196 AACTTGTTCAACCTTTTGCTTAAATTCATCAAATTGATGGATCA-TCGTTTCCAGAGAAAGTTCA
902846 TAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTT
260 TAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTT
* * *
902911 TTGCTTGAATTCATCAG
325 TTACCTGAATCCATCAG
*
902928 TTGATGGATCAACATTACCAG-GTAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAA
1 TTGATGGATCAACATTTCCAGAG-AAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAA
902992 AAGTTCATAATGAGAAGAACT
65 AAGTTCATAATGAGAAGAACT
903013 CATCAAGAGC
Statistics
Matches: 402, Mismatches: 22, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
340 13 0.03
341 389 0.97
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (341 bp):
TTGATGGATCAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAAA
AGTTCATAATGAGAAGAACTTGTTCAACCTTTTGTTTAAATTCATCACTTGATGGATCATTCTTT
TCCAGAAAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAG
AACTTGTTCAACCTTTTGCTTAAATTCATCAAATTGATGGATCATCGTTTCCAGAGAAAGTTCAT
AATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTT
TACCTGAATCCATCAG
Found at i:903267 original size:3 final size:3
Alignment explanation
Indices: 903261--903342 Score: 114
Period size: 3 Copynumber: 28.0 Consensus size: 3
903251 TTTATCCATT
* ** *
903261 TTA TTA TTA TTA TTA TTA TTA TTA TCA TTA TTA ACA TTA TTA TCA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
903309 TTA TT- TTA TT- TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
903343 ATATATTAAA
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
2 4 0.06
3 65 0.94
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:904765 original size:24 final size:22
Alignment explanation
Indices: 904717--904765 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 22
904707 GTTTTAATAG
* *
904717 TATTTTTATTTTTATGAATAAA
1 TATTTTTATTTTCATAAATAAA
904739 TATTTTTATATATTCATAAATAAA
1 TATTTTTAT-T-TTCATAAATAAA
904763 TAT
1 TAT
904766 AATAGTAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 9 0.39
23 1 0.04
24 13 0.57
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (22 bp):
TATTTTTATTTTCATAAATAAA
Found at i:906253 original size:21 final size:21
Alignment explanation
Indices: 906224--906268 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
906214 TATAATAATG
* *
906224 ATTAATTAAGAGGTTGTTAGT
1 ATTAATTAAAAAGTTGTTAGT
* *
906245 ATTAGTTAAAAATTTGTTAGT
1 ATTAATTAAAAAGTTGTTAGT
906266 ATT
1 ATT
906269 TGGTGTTAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.47
Consensus pattern (21 bp):
ATTAATTAAAAAGTTGTTAGT
Found at i:909587 original size:29 final size:28
Alignment explanation
Indices: 909554--909642 Score: 81
Period size: 29 Copynumber: 3.0 Consensus size: 28
909544 TAAAATATAT
*
909554 AACTTTTAAAATTATATTTTTAGTCCCTA
1 AACTTTTAAAATTATA-TTTTAGTCACTA
* * *
909583 AACTTTTCAAAGTTTATACTTTA-ACTACTA
1 AACTTTT-AAA-ATTATATTTTAGTC-ACTA
*
909613 AACTTTCAAAACTTATATTTTAGTCACTA
1 AACTTTTAAAA-TTATATTTTAGTCACTA
909642 A
1 A
909643 CCAAAATTTG
Statistics
Matches: 47, Mismatches: 8, Indels: 10
0.72 0.12 0.15
Matches are distributed among these distances:
29 25 0.53
30 17 0.36
31 5 0.11
ACGTcount: A:0.37, C:0.16, G:0.03, T:0.44
Consensus pattern (28 bp):
AACTTTTAAAATTATATTTTAGTCACTA
Found at i:913986 original size:23 final size:25
Alignment explanation
Indices: 913960--914007 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
913950 AATATAATAG
913960 AATTT-AAAATT-CAATTAATGAAA
1 AATTTCAAAATTACAATTAATGAAA
*
913983 AATTTCAAAATTACCATTAATGAAA
1 AATTTCAAAATTACAATTAATGAAA
914008 CTTGATATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 5 0.23
24 6 0.27
25 11 0.50
ACGTcount: A:0.54, C:0.08, G:0.04, T:0.33
Consensus pattern (25 bp):
AATTTCAAAATTACAATTAATGAAA
Found at i:914475 original size:29 final size:29
Alignment explanation
Indices: 914394--914475 Score: 69
Period size: 29 Copynumber: 2.8 Consensus size: 29
914384 TAAAATATAT
*
914394 AACTTCTCAAAA-TTATATTTCTAGTCCCTA
1 AACTT-TCAAAACTTATATTT-TAGTACCTA
* * * *
914424 GACTTTTCAAAGCTTGTACTTTAGCTACC-A
1 AAC-TTTCAAAACTTATATTTTAG-TACCTA
914454 AACTTTCAAAACTTATATTTTA
1 AACTTTCAAAACTTATATTTTA
914476 ATCAATAACC
Statistics
Matches: 40, Mismatches: 9, Indels: 7
0.71 0.16 0.12
Matches are distributed among these distances:
29 16 0.40
30 13 0.32
31 11 0.28
ACGTcount: A:0.33, C:0.21, G:0.06, T:0.40
Consensus pattern (29 bp):
AACTTTCAAAACTTATATTTTAGTACCTA
Found at i:915813 original size:21 final size:21
Alignment explanation
Indices: 915782--915829 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
915772 TATCGAAAAC
915782 ATTATTATTTCTACCAATTTT
1 ATTATTATTTCTACCAATTTT
* * *
915803 TTTATTTTTTCTACTAATTTT
1 ATTATTATTTCTACCAATTTT
915824 ATTATT
1 ATTATT
915830 GTTAGGTACT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.25, C:0.10, G:0.00, T:0.65
Consensus pattern (21 bp):
ATTATTATTTCTACCAATTTT
Found at i:915877 original size:21 final size:21
Alignment explanation
Indices: 915853--915897 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
915843 CCGAAAATGT
915853 TAAAA-AAATTAATATTTTAAA
1 TAAAATAAA-TAATATTTTAAA
*
915874 TAAAATTAATAATATTTTAAA
1 TAAAATAAATAATATTTTAAA
915895 TAA
1 TAA
915898 TTTTTATCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 20 0.91
22 2 0.09
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
TAAAATAAATAATATTTTAAA
Found at i:917500 original size:18 final size:18
Alignment explanation
Indices: 917477--917512 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
917467 AAATTCACTT
917477 CCCTAATAAGTTATCTAA
1 CCCTAATAAGTTATCTAA
917495 CCCTAATAAGTTATCTAA
1 CCCTAATAAGTTATCTAA
917513 TAAACGGTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.22, G:0.06, T:0.33
Consensus pattern (18 bp):
CCCTAATAAGTTATCTAA
Found at i:920587 original size:29 final size:29
Alignment explanation
Indices: 920555--920610 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
920545 ATTCCACCGA
*
920555 ATTTTT-TATTTGAAAAATATATTTTCATC
1 ATTTTTATATTTG-AAAATAAATTTTCATC
*
920584 ATTTTTATTTTTGAAAATAAATTTTCA
1 ATTTTTATATTTGAAAATAAATTTTCA
920611 ATTTTATTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 19 0.79
30 5 0.21
ACGTcount: A:0.36, C:0.05, G:0.04, T:0.55
Consensus pattern (29 bp):
ATTTTTATATTTGAAAATAAATTTTCATC
Found at i:920781 original size:12 final size:12
Alignment explanation
Indices: 920764--920833 Score: 52
Period size: 12 Copynumber: 5.7 Consensus size: 12
920754 TTGGTATTAC
920764 TTTTTAAAAGTA
1 TTTTTAAAAGTA
*
920776 TTTTTAAAA-AA
1 TTTTTAAAAGTA
** *
920787 TGTCATAAAAATA
1 T-TTTTAAAAGTA
* *
920800 TTTTTAGAAGTG
1 TTTTTAAAAGTA
920812 TTTTTGAAAAGTA
1 TTTTT-AAAAGTA
920825 TATTTTAAA
1 T-TTTTAAA
920834 TTTGAATGTT
Statistics
Matches: 43, Mismatches: 11, Indels: 7
0.70 0.18 0.11
Matches are distributed among these distances:
11 2 0.05
12 26 0.60
13 11 0.26
14 4 0.09
ACGTcount: A:0.43, C:0.01, G:0.10, T:0.46
Consensus pattern (12 bp):
TTTTTAAAAGTA
Found at i:921683 original size:31 final size:31
Alignment explanation
Indices: 921603--921692 Score: 109
Period size: 31 Copynumber: 3.0 Consensus size: 31
921593 AAATTTTAGA
921603 TAGTG-ACCAAAATGTAAATTTTG-AAAGTT
1 TAGTGAACCAAAATGTAAATTTTGAAAAGTT
*
921632 TAGTGAA-CAAAATATAAATTTTGGAAAAGTT
1 TAGTGAACCAAAATGTAAATTTT-GAAAAGTT
*
921663 TAG-GAACCAAAATGGT-AATTTTAAAAAGTT
1 TAGTGAACCAAAAT-GTAAATTTTGAAAAGTT
921693 ACATTTTGGC
Statistics
Matches: 53, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
29 19 0.36
30 12 0.23
31 21 0.40
32 1 0.02
ACGTcount: A:0.46, C:0.06, G:0.17, T:0.32
Consensus pattern (31 bp):
TAGTGAACCAAAATGTAAATTTTGAAAAGTT
Found at i:921692 original size:30 final size:30
Alignment explanation
Indices: 921603--921688 Score: 99
Period size: 29 Copynumber: 2.9 Consensus size: 30
921593 AAATTTTAGA
*
921603 TAGTG-ACCAAAATGTAAATTTTGAAAGTT
1 TAGTGAACCAAAATGTAAATTTTAAAAGTT
*
921632 TAGTGAA-CAAAATATAAATTTTGGAAAAGTT
1 TAGTGAACCAAAATGTAAATTTT--AAAAGTT
921663 TAG-GAACCAAAATGGT-AATTTTAAAA
1 TAGTGAACCAAAAT-GTAAATTTTAAAA
921689 AGTTACATTT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
29 23 0.47
30 4 0.08
31 21 0.43
32 1 0.02
ACGTcount: A:0.47, C:0.06, G:0.16, T:0.31
Consensus pattern (30 bp):
TAGTGAACCAAAATGTAAATTTTAAAAGTT
Found at i:922590 original size:304 final size:304
Alignment explanation
Indices: 922041--922649 Score: 1155
Period size: 304 Copynumber: 2.0 Consensus size: 304
922031 TTGACTTTAA
922041 GAAGATGATAAGGTTGAGGTGTCTTGGTTGGATGGTAAATATGAAGTTTCATTAAGGGCAAATTA
1 GAAGATGATAAGGTTGAGGTGTCTTGGTTGGATGGTAAATATGAAGTTTCATTAAGGGCAAATTA
922106 GTCATTTCTCAATTTAATGAATTTAATATTCATTAAAGTTTAAATCAAAGGTAAATTAGCATGAA
66 GTCATTTCTCAATTTAATGAATTTAATATTCATTAAAGTTTAAATCAAAGGTAAATTAGCATGAA
*
922171 ATTATCTAATATTCATGCCAATTTGTTATCGTCTTCTCCAAGTTGTCGTGAGCTTCCTAAAGTAA
131 ATTATCTAATACTCATGCCAATTTGTTATCGTCTTCTCCAAGTTGTCGTGAGCTTCCTAAAGTAA
* *
922236 GAGAAAAAATTTTGGTTTCCATTTTTGAGCAATTTCCTTTGGATTTCAAGTTATGCCGTGAAATA
196 GAGAAAAAAATTTAGTTTCCATTTTTGAGCAATTTCCTTTGGATTTCAAGTTATGCCGTGAAATA
922301 GAAAGTGATATATTCGAAAAACGCTATCTTTTGGTACCAATTAT
261 GAAAGTGATATATTCGAAAAACGCTATCTTTTGGTACCAATTAT
*
922345 GAAGATGATAAGGTTGAGGTGTCTTGGTTGGATGGTAAATATGAAGTTTCATTAAGGGTAAATTA
1 GAAGATGATAAGGTTGAGGTGTCTTGGTTGGATGGTAAATATGAAGTTTCATTAAGGGCAAATTA
*
922410 GTTATTTCTCAATTTAATGAATTTAATATTCATTAAAGTTTAAATCAAAGGTAAATTAGCATGAA
66 GTCATTTCTCAATTTAATGAATTTAATATTCATTAAAGTTTAAATCAAAGGTAAATTAGCATGAA
*
922475 ATTATCTAATACTCATGCCAATTTGTTATCGTCTTCTCCAAGTTGTCGTGAGCTTCCTAAGGTAA
131 ATTATCTAATACTCATGCCAATTTGTTATCGTCTTCTCCAAGTTGTCGTGAGCTTCCTAAAGTAA
922540 GAGAAAAAAATTTAGTTTCCATTTTTGAGCAATTTCCTTTGGATTTCAAGTTATGCCGTGAAATA
196 GAGAAAAAAATTTAGTTTCCATTTTTGAGCAATTTCCTTTGGATTTCAAGTTATGCCGTGAAATA
*
922605 GAAAGTGATATATTTGAAAAACGCTATCTTTTGGTACCAATTAT
261 GAAAGTGATATATTCGAAAAACGCTATCTTTTGGTACCAATTAT
922649 G
1 G
922650 CTTGCTCAAC
Statistics
Matches: 298, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
304 298 1.00
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.37
Consensus pattern (304 bp):
GAAGATGATAAGGTTGAGGTGTCTTGGTTGGATGGTAAATATGAAGTTTCATTAAGGGCAAATTA
GTCATTTCTCAATTTAATGAATTTAATATTCATTAAAGTTTAAATCAAAGGTAAATTAGCATGAA
ATTATCTAATACTCATGCCAATTTGTTATCGTCTTCTCCAAGTTGTCGTGAGCTTCCTAAAGTAA
GAGAAAAAAATTTAGTTTCCATTTTTGAGCAATTTCCTTTGGATTTCAAGTTATGCCGTGAAATA
GAAAGTGATATATTCGAAAAACGCTATCTTTTGGTACCAATTAT
Found at i:924087 original size:6 final size:6
Alignment explanation
Indices: 924076--924100 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
924066 TGTCTTAATT
924076 ATTTAA ATTTAA ATTTAA ATTTAA A
1 ATTTAA ATTTAA ATTTAA ATTTAA A
924101 GACTTGATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
ATTTAA
Found at i:924214 original size:30 final size:28
Alignment explanation
Indices: 924180--924277 Score: 72
Period size: 30 Copynumber: 3.3 Consensus size: 28
924170 CTTAAAGGAT
924180 TAAAATGGCAAAAATAGAAACTTAAAAGGC
1 TAAAATGG-AAAAATA-AAACTTAAAAGGC
* * * *
924210 TAAAACAGTGAAAACTAAAATTTAAAAGAC
1 TAAAA-TG-GAAAAATAAAACTTAAAAGGC
* *
924240 TAAAATAGAAAAAACACAAACTT-AAAGGAC
1 TAAAAT-GGAAAAATA-AAACTTAAAAGG-C
924270 TAAAATGG
1 TAAAATGG
924278 TATTAACAGA
Statistics
Matches: 52, Mismatches: 11, Indels: 11
0.70 0.15 0.15
Matches are distributed among these distances:
29 10 0.19
30 34 0.65
31 7 0.13
32 1 0.02
ACGTcount: A:0.59, C:0.10, G:0.13, T:0.17
Consensus pattern (28 bp):
TAAAATGGAAAAATAAAACTTAAAAGGC
Found at i:925688 original size:3 final size:3
Alignment explanation
Indices: 925682--925733 Score: 77
Period size: 3 Copynumber: 16.7 Consensus size: 3
925672 ATTTTATTAT
*
925682 TAA TAA TAA TAA TAA CAA TAA TAA TAA TAAA TAA TAA TAA TAAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA T-AA TAA
925729 TAA TA
1 TAA TA
925734 TTTTTTAAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
3 39 0.87
4 6 0.13
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:925716 original size:13 final size:13
Alignment explanation
Indices: 925683--925733 Score: 84
Period size: 13 Copynumber: 3.8 Consensus size: 13
925673 TTTTATTATT
925683 AATAATAATAATAA
1 AATAATAATAAT-A
925697 CAATAATAATAATA
1 -AATAATAATAATA
925711 AATAATAATAATA
1 AATAATAATAATA
925724 AATAATAATA
1 AATAATAATA
925734 TTTTTTAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
13 23 0.64
14 1 0.03
15 12 0.33
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (13 bp):
AATAATAATAATA
Found at i:930206 original size:16 final size:17
Alignment explanation
Indices: 930185--930220 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
930175 CAAACCAAAT
930185 CTGTTTTA-TTTCTGCA
1 CTGTTTTATTTTCTGCA
930201 CTGTTTTATTTTCTGCA
1 CTGTTTTATTTTCTGCA
930218 CTG
1 CTG
930221 CATTGTTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.11, C:0.19, G:0.14, T:0.56
Consensus pattern (17 bp):
CTGTTTTATTTTCTGCA
Found at i:930391 original size:9 final size:9
Alignment explanation
Indices: 930377--930418 Score: 57
Period size: 9 Copynumber: 4.4 Consensus size: 9
930367 AAAGTTCGCT
930377 AAAAAAATA
1 AAAAAAATA
930386 AAAAAAATA
1 AAAAAAATA
930395 AAACGAAAATA
1 AAA--AAAATA
*
930406 AAAAAAACA
1 AAAAAAATA
930415 AAAA
1 AAAA
930419 TATAACGAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
9 21 0.70
11 9 0.30
ACGTcount: A:0.86, C:0.05, G:0.02, T:0.07
Consensus pattern (9 bp):
AAAAAAATA
Found at i:930405 original size:20 final size:20
Alignment explanation
Indices: 930380--930417 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
930370 GTTCGCTAAA
*
930380 AAAATAAAAAAAATAAAACG
1 AAAATAAAAAAAACAAAACG
930400 AAAATAAAAAAAACAAAA
1 AAAATAAAAAAAACAAAA
930418 ATATAACGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.84, C:0.05, G:0.03, T:0.08
Consensus pattern (20 bp):
AAAATAAAAAAAACAAAACG
Found at i:930417 original size:26 final size:27
Alignment explanation
Indices: 930378--930428 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
930368 AAGTTCGCTA
930378 AAAAAATAAAAAAAATAAAACGAAAAT
1 AAAAAATAAAAAAAATAAAACGAAAAT
* *
930405 AAAAAA-AACAAAAATATAACGAAA
1 AAAAAATAAAAAAAATAAAACGAAA
930429 TGGGTTACCT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 16 0.73
27 6 0.27
ACGTcount: A:0.80, C:0.06, G:0.04, T:0.10
Consensus pattern (27 bp):
AAAAAATAAAAAAAATAAAACGAAAAT
Found at i:931847 original size:14 final size:14
Alignment explanation
Indices: 931828--931862 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
931818 CCAATCTGGC
931828 AGCTGAACAATTGG
1 AGCTGAACAATTGG
931842 AGCTGAACAATTGG
1 AGCTGAACAATTGG
931856 AGCTGAA
1 AGCTGAA
931863 ATAAGCTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.37, C:0.14, G:0.29, T:0.20
Consensus pattern (14 bp):
AGCTGAACAATTGG
Found at i:935735 original size:21 final size:22
Alignment explanation
Indices: 935702--935742 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
935692 GGTTAAAATA
*
935702 AAAAATAAGAATTATATAAAAG
1 AAAAATAAGAATTAAATAAAAG
*
935724 AAAAA-AATAATTAAATAAA
1 AAAAATAAGAATTAAATAAA
935743 CAAATTAAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.73, C:0.00, G:0.05, T:0.22
Consensus pattern (22 bp):
AAAAATAAGAATTAAATAAAAG
Found at i:941039 original size:5 final size:5
Alignment explanation
Indices: 941029--941068 Score: 80
Period size: 5 Copynumber: 8.0 Consensus size: 5
941019 TGAACACATA
941029 TTATG TTATG TTATG TTATG TTATG TTATG TTATG TTATG
1 TTATG TTATG TTATG TTATG TTATG TTATG TTATG TTATG
941069 ATGATATAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 35 1.00
ACGTcount: A:0.20, C:0.00, G:0.20, T:0.60
Consensus pattern (5 bp):
TTATG
Found at i:941560 original size:22 final size:22
Alignment explanation
Indices: 941504--941554 Score: 77
Period size: 22 Copynumber: 2.3 Consensus size: 22
941494 TTGGTATATG
941504 TATATGGTTCTTAAGGAATTTC
1 TATATGGTTCTTAAGGAATTTC
*
941526 TATATGGTTCTTATGGACATTT-
1 TATATGGTTCTTAAGGA-ATTTC
941548 TATATGG
1 TATATGG
941555 CACTTAGGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 23 0.85
23 4 0.15
ACGTcount: A:0.25, C:0.08, G:0.20, T:0.47
Consensus pattern (22 bp):
TATATGGTTCTTAAGGAATTTC
Found at i:941582 original size:23 final size:23
Alignment explanation
Indices: 941552--941620 Score: 84
Period size: 23 Copynumber: 3.0 Consensus size: 23
941542 ACATTTTATA
*
941552 TGGCACTTAGGTGCATTTCTACG
1 TGGCACTTCGGTGCATTTCTACG
* * *
941575 TGGCACTTCGGAGCAATTCTATG
1 TGGCACTTCGGTGCATTTCTACG
* *
941598 TGGCTCTTCGGTGCATTTATACG
1 TGGCACTTCGGTGCATTTCTACG
941621 ATCTGCGGTG
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.17, C:0.22, G:0.26, T:0.35
Consensus pattern (23 bp):
TGGCACTTCGGTGCATTTCTACG
Found at i:944687 original size:17 final size:17
Alignment explanation
Indices: 944652--944687 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
944642 TAAATTTTAT
*
944652 GTACCCGTAAAATCTGG
1 GTACCCGTAAAATCCGG
*
944669 GTACCCGTAACATCCGG
1 GTACCCGTAAAATCCGG
944686 GT
1 GT
944688 CGGGACACGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (17 bp):
GTACCCGTAAAATCCGG
Found at i:948706 original size:14 final size:14
Alignment explanation
Indices: 948687--948715 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
948677 GCAGTAACAT
948687 CCTGCAAATTTAAC
1 CCTGCAAATTTAAC
948701 CCTGCAAATTTAAC
1 CCTGCAAATTTAAC
948715 C
1 C
948716 AATCAGGCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.31, G:0.07, T:0.28
Consensus pattern (14 bp):
CCTGCAAATTTAAC
Found at i:954854 original size:2 final size:2
Alignment explanation
Indices: 954849--954898 Score: 93
Period size: 2 Copynumber: 25.5 Consensus size: 2
954839 ATTGTTGATA
954849 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
954891 AT AT -T AT A
1 AT AT AT AT A
954899 ATTTAAATTT
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 46 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:956127 original size:23 final size:23
Alignment explanation
Indices: 956101--956173 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
956091 ATATTTTACA
*
956101 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
* * *
956124 ATATAAACGTTACATATTACATT
1 ATATAAGCGCTACCTATTACATT
*
956147 ATATAAGCGCTACCTATTACATC
1 ATATAAGCGCTACCTATTACATT
956170 ATAT
1 ATAT
956174 TTTTACATAT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.36
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:956618 original size:490 final size:489
Alignment explanation
Indices: 955698--959450 Score: 6000
Period size: 482 Copynumber: 7.8 Consensus size: 489
955688 TTATAATATG
* *
955698 TTGAAAGTGTCCATACTTTTTTATAAAAAGGATCGATATTTTTTTTAAAGTTATGTAATTTATGT
1 TTGAAAGTGTCTATAC-TTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGT
955763 TTCAA-TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
65 TTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
955827 CAAACAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATA
130 CAAA-AAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATA
* * *
955892 TTAACTAAATATAATAATAAATATGTAATATATATGTTTATTATTTTTAATTTAATAATAATATA
194 TTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATA
955957 TATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAC
259 TATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAC
* * *
956022 TCAAAAGATAACCTTAAATTAATATTTTCCACAGTGAAAAAATTATGGACACTTTTATAAAAAGA
324 TCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAATATGGACACTTTTATAAAAAGG
* ** *
956087 ATAGATATTTTACAATATAAGCACTACCTATTACATTATATAAACGTTACATATTACATTATATA
389 ATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACACTACCTATTACATTATATA
*
956152 AGCGCTACCTATTACATCATATTTTTACATATTATA
454 AGCGCTACCTATTACATCATATTTTTACCTATTATA
*
956188 TTGAAAGTG-CATATACTTTTTATAAAAAGGATCGATACTTTTTATAAAGTTATGTAATTTATGT
1 TTGAAAGTGTC-TATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGT
*
956252 TTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTATAATATTAATTTAATAATTTCATTTGC
65 TTCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGC
*
956317 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAATAATA
129 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATA
956382 TTAACCAAAGATAATAATAAATATGTAATATATATGTTT-TCTGTTTTTAATTTAATAATAATAT
194 TTAACCAAAGATAATAATAAATATGTAATATATATGTTTAT-TGTTTTTAATTTAATAATAATAT
* * * *
956446 ATACCGTAACGTAAAAAATAAATCATTAGACACTTATAATTATTAAATTAATATCTTAAAACTCA
258 ATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCA
* * * * *
956511 CTTAAAAGAAAACCTTAAATTAATGTTTTCTACAGTGAAAAAAGTATAGACACTTTTATAAAAAG
323 CTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAATATGGACACTTTTATAAAAAG
*
956576 GATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATAT
388 GATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACACTACCTATTACATTATAT
* *
956641 AAGTGCTACATATTACATCATATTTTTACCTATTATA
453 AAGCGCTACCTATTACATCATATTTTTACCTATTATA
* *
956678 TTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCTATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
956743 TCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCAC
66 TCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCAC
* *
956808 AAAGATTTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTT-AA---AACAATATT
131 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATT
*
956869 AACCAAAGATAAT-A-AAATATGTAATATATA--TATATTGTTTTTAATTTAATAATAATATATA
196 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATA
956930 TCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTC
261 TCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTC
*
956995 AAAAGATAACCTTAAATTAATGTTTTCCATAGTGAAAAAAATATGGACACTTTTATAAAAAAGGA
326 AAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAATATGGACACTTTTAT-AAAAAGGA
*
957060 TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAAAACTACCTATTACATTATATAA
390 TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACACTACCTATTACATTATATAA
*
957125 GCGCTACCTATTACATCATATTTTTACATATTATA
455 GCGCTACCTATTACATCATATTTTTACCTATTATA
*
957160 TTGAAAGTGTC--CACTTTTTAT-AAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCTATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
957222 TCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAAT--TTTCATTTGCAC
66 TCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCAC
*
957285 AAAAATTTATTTGATTGTTTTGATA-TTT-TAAAATAATATTTAGAATTTAAATTTAAC-A-A-T
131 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATT
957345 -ACCAAAG---ATAATAAATATGT-A-ATATATGTTTATTGTTTTTAATTTAATAATAATATATA
196 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATA
*
957404 TCGTAACGTAAAAAATAAATCATTAGACGCATATAATTACTAAATTAATATCTTAAAACTCACTC
261 TCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTC
*
957469 AAAAGATAACCTTAAATTAATGTTTTCCATAGTGAAAAAAATATGGACACTTTTATAAAAAGGAT
326 AAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAATATGGACACTTTTATAAAAAGGAT
*
957534 AGATACTTTACAATATAAGCACTACCTATTACATTATATAAAAACTACCTATTACATTATATAAG
391 AGATACTTTACAATATAAGCACTACCTATTACATTATATAAACACTACCTATTACATTATATAAG
957599 CGCTACCTATTACATCATATTTTTACCTATTATA
456 CGCTACCTATTACATCATATTTTTACCTATTATA
*
957633 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCTATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
957698 TCAATATTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
66 TCAAT-TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
*
957763 CAAAAATTTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATA-
130 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
957827 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATT-TTTTTAA-TT--TAAT-A-ATAT
195 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
*
957886 ATCGTAACGTAAAAAATAAATTATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
260 ATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
*
957951 C-AAAGATAACCTTAAATTAATGTTTTCCATAGTGAAAAAAATATGGACACTTTTATAAAAAGGA
325 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAATATGGACACTTTTATAAAAAGGA
* * *
958015 CAGATACTTTACAATATAAGCACTACCTATTACCTTATATAAAAACTACCTATTACATTATATAA
390 TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACACTACCTATTACATTATATAA
* * * *
958080 GTGTTACATATTACATCATATTTTTACTTATTATA
455 GCGCTACCTATTACATCATATTTTTACCTATTATA
* *
958115 TTGAAAGTGT-TCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTATAT
1 TTGAAAGTGTCT-ATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGT
958179 TTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGC
65 TTCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGC
958244 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAAT-ATATTTAGAA-TTAAATTTAACAATA
129 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATA
*
958307 TTAACCAAATATAATAATAAATATGTAATATATATGTTTATTGTTTTT-ATTTAATAATAATATA
194 TTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATA
958371 TATCGTAACGT-AAAAA-AAATCATTAGACGCCTATAATTACTAAATTAATATCTT-AAACTCAC
259 TATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAC
*
958433 TCAAAAGATAACCTTAAATTAATGTTTTCCATAGTG-----AA-A---ACACTTTTATAAAAAGG
324 TCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAATATGGACACTTTTATAAAAAGG
958489 ATAGATACTTTACAATATAAG-----------------------CACTACCTATTACATTATATA
389 ATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACACTACCTATTACATTATATA
958531 AGCGCTACCTATTACATCATATTTTTACCTATTATA
454 AGCGCTACCTATTACATCATATTTTTACCTATTATA
* * *
958567 TTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTT-AA---A-GT-ATTTATTTT
1 TTGAAAGTGTCTATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
958626 TCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATA-TAATTTAATAATTTCATTTGCAC
66 TCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCAC
958690 -AAAAA--ATTTGATTGTTTTGATA-TTTATAAAATAATATTTAGAATTTAAATTTAACAATATT
131 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATT
*
958751 AACTAAAGATAATAATAAATATGT-A-ATATATGTTTATTGTTTTTAATTTAATAATAATATATA
196 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATA
* * *
958814 CCGTAACGTAAAACATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAATC
261 TCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTC
* * *
958879 AAAAGATAATCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACGCTTTTATAAAAAGGAT
326 AAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAATATGGACACTTTTATAAAAAGGAT
* *
958944 AGATACTTTACAATATAAGCACTACCTATTAATTACATTATATAAACGCTACGTATTACATTATA
391 AGATACTTTACAATATAAGCACTACC---T-ATTACATTATATAAACACTACCTATTACATTATA
*
959009 TAAGCGTTACCTATTACATCATATTTTTACCTATTATA
452 TAAGCGCTACCTATTACATCATATTTTTACCTATTATA
* **
959047 TTGAAAGTGT-TCATTCTTTTTATAAAAAGGATTAATACTTTTTTTAAAGTTATGTAATTTATGT
1 TTGAAAGTGTCT-ATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGT
* *
959111 TTTAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
65 TTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
* *
959176 TAAAAAATTATTTAATTGTTTTGATATTTTA-AAAAT-ATATTTAGAATTTAAATTTAA-AATA-
130 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
959237 TAACCAAAGATAATAATAAATA-GTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
195 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
*
959301 ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
260 ATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
* * *
959366 CAAAATATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGTACACTTTTATAAAAAAGG
325 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAATATGGACACTTTTAT-AAAAAGG
959431 ATAGATACTTTACAATATAA
389 ATAGATACTTTACAATATAA
959451 TTATCGGTTT
Statistics
Matches: 3058, Mismatches: 106, Indels: 199
0.91 0.03 0.06
Matches are distributed among these distances:
440 29 0.01
441 54 0.02
442 43 0.01
443 43 0.01
444 64 0.02
445 37 0.01
446 12 0.00
447 2 0.00
448 1 0.00
449 1 0.00
450 1 0.00
451 2 0.00
452 95 0.03
453 37 0.01
472 7 0.00
473 120 0.04
474 158 0.05
475 73 0.02
476 52 0.02
477 83 0.03
478 2 0.00
479 133 0.04
480 120 0.04
481 221 0.07
482 440 0.14
483 97 0.03
484 84 0.03
485 33 0.01
486 64 0.02
487 58 0.02
488 172 0.06
489 222 0.07
490 431 0.14
491 67 0.02
ACGTcount: A:0.41, C:0.11, G:0.07, T:0.41
Consensus pattern (489 bp):
TTGAAAGTGTCTATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
TCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCAC
AAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATT
AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATA
TCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTC
AAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAATATGGACACTTTTATAAAAAGGAT
AGATACTTTACAATATAAGCACTACCTATTACATTATATAAACACTACCTATTACATTATATAAG
CGCTACCTATTACATCATATTTTTACCTATTATA
Found at i:956626 original size:23 final size:23
Alignment explanation
Indices: 956591--956663 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
956581 ATACTTTACA
*
956591 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
956614 ATATAAACGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
* * *
956637 ATATAAGTGCTACATATTACATC
1 ATATAAGCGCTACCTATTACATT
956660 ATAT
1 ATAT
956664 TTTTACCTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.36
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:957098 original size:21 final size:23
Alignment explanation
Indices: 957073--957145 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
957063 ATACTTTACA
957073 ATATAAGCACTACCTATTACATT
1 ATATAAGCACTACCTATTACATT
**
957096 ATATAAAAACTACCTATTACATT
1 ATATAAGCACTACCTATTACATT
* *
957119 ATATAAGCGCTACCTATTACATC
1 ATATAAGCACTACCTATTACATT
957142 ATAT
1 ATAT
957146 TTTTACATAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.41, C:0.21, G:0.04, T:0.34
Consensus pattern (23 bp):
ATATAAGCACTACCTATTACATT
Found at i:957571 original size:21 final size:23
Alignment explanation
Indices: 957546--957618 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
957536 ATACTTTACA
957546 ATATAAGCACTACCTATTACATT
1 ATATAAGCACTACCTATTACATT
**
957569 ATATAAAAACTACCTATTACATT
1 ATATAAGCACTACCTATTACATT
* *
957592 ATATAAGCGCTACCTATTACATC
1 ATATAAGCACTACCTATTACATT
957615 ATAT
1 ATAT
957619 TTTTACCTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.41, C:0.21, G:0.04, T:0.34
Consensus pattern (23 bp):
ATATAAGCACTACCTATTACATT
Found at i:958062 original size:23 final size:23
Alignment explanation
Indices: 958036--958079 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
958026 CAATATAAGC
*
958036 ACTACCTATTACCTTATATAAAA
1 ACTACCTATTACATTATATAAAA
958059 ACTACCTATTACATTATATAA
1 ACTACCTATTACATTATATAA
958080 GTGTTACATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.43, C:0.20, G:0.00, T:0.36
Consensus pattern (23 bp):
ACTACCTATTACATTATATAAAA
Found at i:958533 original size:23 final size:23
Alignment explanation
Indices: 958503--958552 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
958493 ATACTTTACA
*
958503 ATATAAGCACTACCTATTACATT
1 ATATAAGCACTACCTATTACATC
*
958526 ATATAAGCGCTACCTATTACATC
1 ATATAAGCACTACCTATTACATC
958549 ATAT
1 ATAT
958553 TTTTACCTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.38, C:0.22, G:0.06, T:0.34
Consensus pattern (23 bp):
ATATAAGCACTACCTATTACATC
Found at i:959005 original size:23 final size:23
Alignment explanation
Indices: 958975--959032 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
958965 CTACCTATTA
*
958975 ATTACATTATATAAACGCTACGT
1 ATTACATTATATAAACGCTACCT
* *
958998 ATTACATTATATAAGCGTTACCT
1 ATTACATTATATAAACGCTACCT
*
959021 ATTACATCATAT
1 ATTACATTATAT
959033 TTTTACCTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.38, C:0.17, G:0.07, T:0.38
Consensus pattern (23 bp):
ATTACATTATATAAACGCTACCT
Found at i:959382 original size:932 final size:935
Alignment explanation
Indices: 955698--959450 Score: 5608
Period size: 955 Copynumber: 3.9 Consensus size: 935
955688 TTATAATATG
* *
955698 TTGAAAGTGTCCATACTTTTTTATAAAAAGGATCGATATTTTTTTTAAAGTTATGTAATTTATGT
1 TTGAAAGTGTCCATAC-TTTTTATAAAAATGATCGATACTTTTTTTAAA--TATGTAATTTATGT
955763 TTCAA-TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
63 TTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
955827 CAAACAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATA
128 C-AA-AAA--ATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATA
* * *
955892 TTAACTAAATATAATAATAAATATGTAATATATATGTTTATTATTTTTAATTTAATAATAATATA
189 TTAACCAAAGATAATAATAAATATGT-A-ATATATGTTTATTGTTTTTAATTTAATAATAATATA
955957 TATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAC
252 TA-CGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAC
* * * *
956022 TCAAAAGATAACCTTAAATTAATATTTTCCACAGTGAAAAAATTATGGACACTTTTATAAAAAGA
316 TCAAAAGATAACCTTAAATTAATGTTTTCCATAGTGAAAAAAATATGGACACTTTTATAAAAAGG
* *** *
956087 ATAGATATTTTACAATATAAGCACTACCTATTACATTATATAAACGTTACATATTACATTATATA
381 ATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAAAACTACCTATTACATTATATA
* *
956152 AGCGCTACCTATTACATCATATTTTTACATATTATATTGAAAGTGCAT-ATACTTTTTATAAAAA
446 AGCGTTACCTATTACATCATATTTTTACATATTATATTGAAAGTG-TTCAT-CTTTTTATAAAAA
*
956216 GGATCGATACTTTTTATAAAGTTATGTAATTTATGTTTCAATTTTTTTTAATAGTGTTTCATGTT
509 GGATCGATACTTTTTTTAAAGTTATGTAATTTATGTTTCAA-TTTTTTTAATAGTGTTTCATGTT
*
956281 TTCCACCTATAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATT
573 TTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATT
956346 TTATAAAATAATATTTAGAATTTAAATTTAATAATATTAACCAAAGATAATAATAAATATGTAAT
638 TTA-AAAAT-ATATTTAGAATTTAAATTTAA-AATA-TAACCAAAGATAATAATAAATA-GTAAT
*
956411 ATATATGTTT-TCTGTTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAG
698 ATATATGTTTAT-TGTTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAG
* * * * *
956475 ACACTTATAATTATTAAATTAATATCTTAAAACTCACTTAAAAGAAAACCTTAAATTAATGTTTT
762 ACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTT
* *
956540 CTACAGTGAAAAAAGTATAGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACC
827 CCATAGTG----AA--ATAGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACC
*
956605 TATTACATTATATAAACGCTACCTATTACATTATATAAGTGCTACATATTACATCATATTTTTAC
886 TATTACATTATAT-AA-G----------C-----------GCTACCTATTACATCATATTTTTAC
956670 CTATTATA
928 CTATTATA
956678 TTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAA--TATGTAATTTATGTT
956743 TCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCAC
64 TCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCAC
*
956808 AAAGATTTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTT-AA---AACAATATT
129 AAA-A--AATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATT
* *
956869 AACCAAAGATAAT-A-AAATATGTAATATATATATATTGTTTTTAATTTAATAATAATATATATC
191 AACCAAAGATAATAATAAATATGTAATATATGTTTATTGTTTTTAATTTAATAATAATATATA-C
956932 GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
255 GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
956997 AAGATAACCTTAAATTAATGTTTTCCATAGTGAAAAAAATATGGACACTTTTATAAAAAAGGATA
320 AAGATAACCTTAAATTAATGTTTTCCATAGTGAAAAAAATATGGACACTTTTAT-AAAAAGGATA
957062 GATACTTTACAATATAAGCACTACCTATTACATTATATAAAAACTACCTATTACATTATATAAGC
384 GATACTTTACAATATAAGCACTACCTATTACATTATATAAAAACTACCTATTACATTATATAAGC
* *
957127 GCTACCTATTACATCATATTTTTACATATTATATTGAAAGTGTCCA-CTTTTTAT-AAAAGGATC
449 GTTACCTATTACATCATATTTTTACATATTATATTGAAAGTGTTCATCTTTTTATAAAAAGGATC
957190 GATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCAC
514 GATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCAC
*
957255 CTACAATATTAATTTAAT--TTTCATTTGCACAAAAATTTATTTGATTGTTTTGATATTTT-AAA
579 CTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTAAAA
* *
957317 ATAATATTTAGAATTTAAATTTAACA-AT-ACCAAAGATAATAA-ATAT-GT-A-ATATATGTTT
644 AT-ATATTTAGAATTTAAATTTAAAATATAACCAAAGATAATAATAAATAGTAATATATATGTTT
*
957376 ATTGTTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCATATAAT
708 ATTGTTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAAT
957441 TACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCATAGTGAAA
773 TACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCATAGTG---
957506 AAAATATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACCTATTACATTAT
835 -AAATA--GACACTTTTATAAAAAGGATAGATACTTTACAATATAAG------------C-----
957571 ATAAAAACTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATA
880 ------ACTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATA
*
957633 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAA--TATGTAATTTATGTT
957698 TCAATATTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
64 TCAAT-TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
957763 CAAAAATTTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATA-
128 CAAAAA---ATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
957827 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATT-TTTTTAA-TT--TAATAATATAT
190 TAACCAAAGATAATAATAAATATGT-A-ATATATGTTTATTGTTTTTAATTTAATAATAATATAT
*
957888 -CGTAACGTAAAAAATAAATTATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTC
253 ACGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTC
*
957952 -AAAGATAACCTTAAATTAATGTTTTCCATAGTGAAAAAAATATGGACACTTTTATAAAAAGGAC
318 AAAAGATAACCTTAAATTAATGTTTTCCATAGTGAAAAAAATATGGACACTTTTATAAAAAGGAT
*
958016 AGATACTTTACAATATAAGCACTACCTATTACCTTATATAAAAACTACCTATTACATTATATAAG
383 AGATACTTTACAATATAAGCACTACCTATTACATTATATAAAAACTACCTATTACATTATATAAG
* * * *
958081 TGTTACATATTACATCATATTTTTACTTATTATATTGAAAGTGTTCATACTTTTTATAAAAATGA
448 CGTTACCTATTACATCATATTTTTACATATTATATTGAAAGTGTTCAT-CTTTTTATAAAAAGGA
*
958146 TCGATACTTTTTTTAAAGTTATGTAATTTATATTTCAATTTTTTTTAATAGTGTTTCATGTTTTC
512 TCGATACTTTTTTTAAAGTTATGTAATTTATGTTTCAA-TTTTTTTAATAGTGTTTCATGTTTTC
958211 CACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTA
576 CACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTA
*
958276 TAAAATATATTTAGAA-TTAAATTTAACAATATTAACCAAATATAATAATAAATATGTAATATAT
641 -AAAATATATTTAGAATTTAAATTTAA-AATA-TAACCAAAGATAATAATAAATA-GTAATATAT
958340 ATGTTTATTGTTTTT-ATTTAATAATAATATATATCGTAACGT-AAAAA-AAATCATTAGACGCC
702 ATGTTTATTGTTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCC
958402 TATAATTACTAAATTAATATCTT-AAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCATA
767 TATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCATA
958466 GTG-AA-A-ACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACCTATTACATTAT
832 GTGAAATAGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACCTATTACATTAT
958528 ATAAGCGCTACCTATTACATCATATTTTTACCTATTATA
897 ATAAGCGCTACCTATTACATCATATTTTTACCTATTATA
*
958567 TTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTT-AA-A-GT-ATTTATTTTTC
1 TTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAATATGTAATTTATGTTTC
958628 AATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATA-TAATTTAATAATTTCATTTGCACAA
66 AATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAA
*
958692 AAAATTTGATTGTTTTGATA-TTTATAAAATAATATTTAGAATTTAAATTTAACAATATTAACTA
131 AAAATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATTAACCA
958756 AAGATAATAATAAATATGTAATATATGTTTATTGTTTTTAATTTAATAATAATATATACCGTAAC
196 AAGATAATAATAAATATGTAATATATGTTTATTGTTTTTAATTTAATAATAATATATA-CGTAAC
* *
958821 GTAAAACATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAATCAAAAGAT
260 GTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGAT
* * * *
958886 AATCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACGCTTTTATAAAAAGGATAGATACT
325 AACCTTAAATTAATGTTTTCCATAGTGAAAAAAATATGGACACTTTTATAAAAAGGATAGATACT
** *
958951 TTACAATATAAGCACTACCTATTAATTACATTATATAAACGCTACGTATTACATTATATAAGCGT
390 TTACAATATAAGCACTACC---T-ATTACATTATATAAAAACTACCTATTACATTATATAAGCGT
* **
959016 TACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTTCATTCTTTTTATAAAAAGGATTA
451 TACCTATTACATCATATTTTTACATATTATATTGAAAGTGTTCA-TCTTTTTATAAAAAGGATCG
*
959081 ATACTTTTTTTAAAGTTATGTAATTTATGTTTTAATTTTTTTAATAGTGTTTCATGTTTTCCACC
515 ATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACC
* * *
959146 TACAATATTAATTTAATAATTTCATTTACATAAAAAATTATTTAATTGTTTTGATATTTTAAAAA
580 TACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTAAAAA
959211 TATATTTAGAATTTAAATTTAAAATATAACCAAAGATAATAATAAATAGTAATATATATGTTTAT
645 TATATTTAGAATTTAAATTTAAAATATAACCAAAGATAATAATAAATAGTAATATATATGTTTAT
*
959276 TGTTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTA
710 TGTTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTA
* *
959341 CTAAATTAATATCTTAAAACTCACTCAAAATATAACCTTAAATTAATGTTTTCCACAGTGAAAAA
775 CTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCATAGTG---AA
959406 AGTATGTACACTTTTATAAAAAAGGATAGATACTTTACAATATAA
837 A-TA-G-ACACTTTTAT-AAAAAGGATAGATACTTTACAATATAA
959451 TTATCGGTTT
Statistics
Matches: 2602, Mismatches: 82, Indels: 216
0.90 0.03 0.07
Matches are distributed among these distances:
921 13 0.00
922 45 0.02
923 43 0.02
925 11 0.00
926 28 0.01
927 97 0.04
928 122 0.05
929 49 0.02
930 25 0.01
931 137 0.05
932 169 0.06
933 3 0.00
934 100 0.04
936 2 0.00
938 1 0.00
941 10 0.00
942 27 0.01
945 1 0.00
953 3 0.00
955 388 0.15
956 162 0.06
957 113 0.04
958 43 0.02
959 75 0.03
960 23 0.01
961 63 0.02
962 20 0.01
963 18 0.01
964 28 0.01
965 13 0.00
966 88 0.03
967 38 0.01
968 53 0.02
969 72 0.03
970 27 0.01
971 153 0.06
972 113 0.04
973 8 0.00
974 1 0.00
975 20 0.01
976 1 0.00
977 2 0.00
978 22 0.01
979 96 0.04
980 76 0.03
ACGTcount: A:0.41, C:0.11, G:0.07, T:0.41
Consensus pattern (935 bp):
TTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAATATGTAATTTATGTTTC
AATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAA
AAAATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATTAACCA
AAGATAATAATAAATATGTAATATATGTTTATTGTTTTTAATTTAATAATAATATATACGTAACG
TAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATA
ACCTTAAATTAATGTTTTCCATAGTGAAAAAAATATGGACACTTTTATAAAAAGGATAGATACTT
TACAATATAAGCACTACCTATTACATTATATAAAAACTACCTATTACATTATATAAGCGTTACCT
ATTACATCATATTTTTACATATTATATTGAAAGTGTTCATCTTTTTATAAAAAGGATCGATACTT
TTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAAT
ATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTAAAAATATATT
TAGAATTTAAATTTAAAATATAACCAAAGATAATAATAAATAGTAATATATATGTTTATTGTTTT
TAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAAT
TAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCATAGTGAAATAGACACT
TTTATAAAAAGGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAGCGCTACCTA
TTACATCATATTTTTACCTATTATA
Found at i:963295 original size:120 final size:120
Alignment explanation
Indices: 963082--963315 Score: 405
Period size: 120 Copynumber: 1.9 Consensus size: 120
963072 CATTCTAGAC
* *
963082 ATAAAGTACCGACACAATATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCGCTAATAAAACC
1 ATAAAGTACCGACACAAAATTAAAAAGTATCGACATAGGTTGTAGACCTATTCGCTAATAAAACC
963147 GGTATACTTATACCGGTTATATTACAAAATTATCTAGTACATTATAATTATGGAT
66 GGTATACTTATACCGGTTATATTACAAAATTATCTAGTACATTATAATTATGGAT
* * *
963202 ATAAAGTACCGACACAAAATTAAAAATTATCGATATAGGTTGTAGACCTATTCGCTCATAAAACC
1 ATAAAGTACCGACACAAAATTAAAAAGTATCGACATAGGTTGTAGACCTATTCGCTAATAAAACC
* *
963267 GGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATT
66 GGTATACTTATACCGGTTATATTACAAAATTATCTAGTACATTATAATT
963316 CTGAGTTCCG
Statistics
Matches: 107, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
120 107 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (120 bp):
ATAAAGTACCGACACAAAATTAAAAAGTATCGACATAGGTTGTAGACCTATTCGCTAATAAAACC
GGTATACTTATACCGGTTATATTACAAAATTATCTAGTACATTATAATTATGGAT
Found at i:963460 original size:300 final size:300
Alignment explanation
Indices: 962911--963495 Score: 1007
Period size: 300 Copynumber: 1.9 Consensus size: 300
962901 TTAAAATTAG
* * *
962911 CGACACAATATTAAAAAGTGTTAATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTT
1 CGACACAAAATTAAAAAGTATCAATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTT
*
962976 ATACCGGTTATATTACAAAATTATCTATTAAATTATAATTCTGGGTTCCGTTGTAAATGTCGACA
66 ATACCGGTTATATTACAAAATTATCTATTAAATTATAATTCTGAGTTCCGTTGTAAATGTCGACA
963041 CTTTTTGACAAGGTATCGACACATTTTCTTCCATTCTAGACATAAAGTACCGACACAATATTAAA
131 CTTTTTGACAAGGTATCGACACATTTTCTTCCATTCTAGACATAAAGTACCGACACAATATTAAA
963106 AAGTGTCGACATAGGTTGTAGACCTATTCGCTAATAAAACCGGTATACTTATACCGGTTATATTA
196 AAGTGTCGACATAGGTTGTAGACCTATTCGCTAATAAAACCGGTATACTTATACCGGTTATATTA
963171 CAAAATTATCTA-GTACATTATAATTATGGATATAAAGTAC
261 CAAAATTATCTATG-ACATTATAATTATGGATATAAAGTAC
* *
963211 CGACACAAAATTAAAAATTATCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTT
1 CGACACAAAATTAAAAAGTATCAATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTT
*
963276 ATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGAGTTCCG-TGTAAATGTCGACA
66 ATACCGGTTATATTACAAAATTATCTATTAAATTATAATTCTGAGTTCCGTTGTAAATGTCGACA
*
963340 C-TTTTGACAAAGGTATCGACACATTTTCTTCCATTCTGGACATAAAGTACCGACACAATATTAA
131 CTTTTTGAC-AAGGTATCGACACATTTTCTTCCATTCTAGACATAAAGTACCGACACAATATTAA
* * *
963404 AAAGTGTCGATATAGGTTGTAGACC-ACTATCGCTCATAAAACCGGTATATTTATACCGGTTATA
195 AAAGTGTCGACATAGGTTGTAGACCTA-T-TCGCTAATAAAACCGGTATACTTATACCGGTTATA
963468 TTACAAAATTATCTATGACATTATAATT
258 TTACAAAATTATCTATGACATTATAATT
963496 CTGGGTTCCG
Statistics
Matches: 270, Mismatches: 11, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
298 8 0.03
299 94 0.35
300 167 0.62
301 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.34
Consensus pattern (300 bp):
CGACACAAAATTAAAAAGTATCAATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTT
ATACCGGTTATATTACAAAATTATCTATTAAATTATAATTCTGAGTTCCGTTGTAAATGTCGACA
CTTTTTGACAAGGTATCGACACATTTTCTTCCATTCTAGACATAAAGTACCGACACAATATTAAA
AAGTGTCGACATAGGTTGTAGACCTATTCGCTAATAAAACCGGTATACTTATACCGGTTATATTA
CAAAATTATCTATGACATTATAATTATGGATATAAAGTAC
Found at i:963660 original size:184 final size:182
Alignment explanation
Indices: 963193--963775 Score: 887
Period size: 180 Copynumber: 3.2 Consensus size: 182
963183 GTACATTATA
* * * *
963193 ATTATGGATATAAAGTACCGACACAAAATTAAAAATTATCGATATAGGTTGTAGACCTATTCGCT
1 ATTATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
*
963258 CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGAGTT
66 CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
963323 CC---GTGTAAATGTCGACACTTTTGACAAAGGTATCGACACA-TTTTCTTCC
131 CCGATGTGTAAATGTCGACACTTTTGAC-AAGGTATCGACACATTTTTCTTCC
*
963372 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACC-ACTATCG
1 ATTATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTA-T-TCG
*
963436 CTCATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATGACATTATAATTCTGGG
64 CTCATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGG
963501 TTCCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTTCTTCC
129 TTCCGATGTGTAAATGTCGACAC-TTTTGACAAGGTATCGACACA-TTTTTCTTCC
* *
963557 ATTATGGATATAAAGTTCCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
1 ATTATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
* *
963622 CATAAAACCGGTATATTTATACCGATTATATTACAAAATTATCTATTACATTATAATTATGGGTT
66 CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
* *** * *
963687 CCGATGTTTTTTTCAATCGACACTTTTGA-AAAGTATCGACACATTTTTCTTCC
131 CCGATGTGTAAAT--GTCGACACTTTTGACAAGGTATCGACACATTTTTCTTCC
963740 ---ATGGACATAAAGTACCGACACAATATTAAAAAGTGT
1 ATTATGGACATAAAGTACCGACACAATATTAAAAAGTGT
963776 GAAAACTTTG
Statistics
Matches: 372, Mismatches: 21, Indels: 21
0.90 0.05 0.05
Matches are distributed among these distances:
178 1 0.00
179 53 0.14
180 104 0.28
183 40 0.11
184 96 0.26
185 70 0.19
186 8 0.02
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35
Consensus pattern (182 bp):
ATTATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
CCGATGTGTAAATGTCGACACTTTTGACAAGGTATCGACACATTTTTCTTCC
Found at i:966800 original size:198 final size:200
Alignment explanation
Indices: 966407--967534 Score: 1949
Period size: 198 Copynumber: 5.7 Consensus size: 200
966397 TAATATACCA
* * * *
966407 ATTCTCCCATAAAACCGGTATACTTATACTGGTTAGATTGAAAAATTACCTAATACATTATACTT
1 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACCTATTACATTATACTT
* * * *
966472 TTGGGTTTCGATGTTTATGAGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCT
66 ATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATTGTTGCACCC
* *
966537 TGTTTGCCATTTATTCTGGACCAAAAATATCGACACAAACTACAAAAGTGTCGACACATTATTTA
131 TGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTACAAAAGTGTCGATACATTATTTA
966602 GACCT
196 GACCT
*
966607 ATTCTCTCATAAAACCGGTATACTTGTACTGGTTAGATTGAAAAATTACCTATTACATTATACTT
1 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACCTATTACATTATACTT
966672 ATGGGTTTCGATGTTTATGGGATCGACAC-TTTT-TATATGGATCGACACTTTATTGTTGCACCC
66 ATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATTGTTGCACCC
966735 TGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTACAAAAGTGTCGATACATTATTTA
131 TGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTACAAAAGTGTCGATACATTATTTA
*
966800 GACAT
196 GACCT
* *
966805 ATTCTCTCATAAAACCTGTATACTTGTACCTGTTAGATTGAAAAATTACCTATTACATTATACTT
1 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACCTATTACATTATACTT
* *
966870 ATGGGTTTCGATGTTTATCGGATCGACAC-TTTT-TATATGGATCGACAC-TTATTGTTGCACCA
66 ATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATTGTTGCACCC
966932 TGTTTGCCATTCATTCTGGACCAAAAAT-TCGACACAAAACTACAAAAGTGTCGATACATTATTT
131 TGTTTGCCATTCATTCTGGACCAAAAATATCGACAC-AAACTACAAAAGTGTCGATACATTATTT
*
966996 AGACAT
195 AGACCT
*
967002 ATTCTCTCATAAAACCTGTATACTTGTACCGGTTAGATTGAAAAATTACCTATTACATTATACTT
1 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACCTATTACATTATACTT
*
967067 ATGGGTTTCGATGTTTATCGGATCGACACTTTTTATATATGGATCGACACTTTATTGTTGCACCC
66 ATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATTGTTGCACCC
967132 TGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTACAAAAGTGTCGATACATTATTTA
131 TGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTACAAAAGTGTCGATACATTATTTA
967197 GACCT
196 GACCT
*
967202 A-T-TCTCATAAAACCGGTATACTTGTACCGGTTAGATTAAAAAATTACCTA-TACATTATACTT
1 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACCTATTACATTATACTT
967264 ATGGG-TTCGATGTTTATGGGATCGACAC-TTTTATATATGGATCGACACTTTA-TGTTGCACCC
66 ATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATTGTTGCACCC
967326 TGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTACAAAAGTGTCGATACATTATTTA
131 TGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTACAAAAGTGTCGATACATTATTTA
967391 GACCT
196 GACCT
*
967396 ATTCTCTCATAAAACCGGTATAC-TGTACCGATTAGATTGAAAAATTACCTATTACATTATACTT
1 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACCTATTACATTATACTT
* *
967460 TTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCC
66 ATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATTGTTGCACCC
967525 TGTTTGCCAT
131 TGTTTGCCAT
967535 ATTGTAAATT
Statistics
Matches: 892, Mismatches: 25, Indels: 23
0.95 0.03 0.02
Matches are distributed among these distances:
194 81 0.09
195 51 0.06
196 64 0.07
197 208 0.23
198 278 0.31
199 39 0.04
200 164 0.18
201 7 0.01
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.36
Consensus pattern (200 bp):
ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACCTATTACATTATACTT
ATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATTGTTGCACCC
TGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTACAAAAGTGTCGATACATTATTTA
GACCT
Found at i:967097 original size:395 final size:396
Alignment explanation
Indices: 966407--967534 Score: 1925
Period size: 395 Copynumber: 2.8 Consensus size: 396
966397 TAATATACCA
* *
966407 ATTCTCCCATAAAACCGGTATACTTATA-CTGGTTAGATTGAAAAATTACCTAATACATTATACT
1 ATTCTCTCATAAAACCGGTATACTTGTACCT-GTTAGATTGAAAAATTACCT-ATACATTATACT
* *
966471 TTTGGGTTTCGATGTTTATGAGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACC
64 TATGGGTTTCGATGTTTATG-GATCGACAC-TTTTATATATGGATCGACAC-TTATTGTTGCACC
* * *
966536 TTGTTTGCCATTTATTCTGGACCAAAAATATCGACACAAACTACAAAAGTGTCGACACATTATTT
126 ATGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTACAAAAGTGTCGATACATTATTT
*
966601 AGACCTATTCTCTCATAAAACCGGTATACTTGTACTGGTTAGATTGAAAAATTACCTATTACATT
191 AGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACCTATTACATT
966666 ATACTTATGGGTTTCGATGTTTATGGGATCGACAC-TTTT-TATATGGATCGACACTTTATTGTT
256 ATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATTGTT
966729 GCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTACAAAAGTGTCGATACAT
321 GCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTACAAAAGTGTCGATACAT
966794 TATTTAGACAT
386 TATTTAGACAT
*
966805 ATTCTCTCATAAAACCTGTATACTTGTACCTGTTAGATTGAAAAATTACCTATTACATTATACTT
1 ATTCTCTCATAAAACCGGTATACTTGTACCTGTTAGATTGAAAAATTACCTA-TACATTATACTT
966870 ATGGGTTTCGATGTTTATCGGATCGACACTTTT-TATATGGATCGACACTTATTGTTGCACCATG
65 ATGGGTTTCGATGTTTAT-GGATCGACACTTTTATATATGGATCGACACTTATTGTTGCACCATG
966934 TTTGCCATTCATTCTGGACCAAAAAT-TCGACACAAAACTACAAAAGTGTCGATACATTATTTAG
129 TTTGCCATTCATTCTGGACCAAAAATATCGACAC-AAACTACAAAAGTGTCGATACATTATTTAG
* *
966998 ACATATTCTCTCATAAAACCTGTATACTTGTACCGGTTAGATTGAAAAATTACCTATTACATTAT
193 ACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACCTATTACATTAT
*
967063 ACTTATGGGTTTCGATGTTTATCGGATCGACACTTTTTATATATGGATCGACACTTTATTGTTGC
258 ACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATTGTTGC
967128 ACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTACAAAAGTGTCGATACATTA
323 ACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTACAAAAGTGTCGATACATTA
*
967193 TTTAGACCT
388 TTTAGACAT
* *
967202 A-T-TCTCATAAAACCGGTATACTTGTACCGGTTAGATTAAAAAATTACCTATACATTATACTTA
1 ATTCTCTCATAAAACCGGTATACTTGTACCTGTTAGATTGAAAAATTACCTATACATTATACTTA
*
967265 TGGG-TTCGATGTTTATGGGATCGACACTTTTATATATGGATCGACACTT-TATGTTGCACCCTG
66 TGGGTTTCGATGTTTAT-GGATCGACACTTTTATATATGGATCGACACTTAT-TGTTGCACCATG
967328 TTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTACAAAAGTGTCGATACATTATTTAGA
129 TTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTACAAAAGTGTCGATACATTATTTAGA
*
967393 CCTATTCTCTCATAAAACCGGTATAC-TGTACCGATTAGATTGAAAAATTACCTATTACATTATA
194 CCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACCTATTACATTATA
* *
967457 CTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCA
259 CTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATTGTTGCA
967522 CCCTGTTTGCCAT
324 CCCTGTTTGCCAT
967535 ATTGTAAATT
Statistics
Matches: 697, Mismatches: 24, Indels: 23
0.94 0.03 0.03
Matches are distributed among these distances:
393 139 0.20
394 133 0.19
395 214 0.31
396 20 0.03
397 105 0.15
398 83 0.12
399 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.36
Consensus pattern (396 bp):
ATTCTCTCATAAAACCGGTATACTTGTACCTGTTAGATTGAAAAATTACCTATACATTATACTTA
TGGGTTTCGATGTTTATGGATCGACACTTTTATATATGGATCGACACTTATTGTTGCACCATGTT
TGCCATTCATTCTGGACCAAAAATATCGACACAAACTACAAAAGTGTCGATACATTATTTAGACC
TATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACCTATTACATTATACT
TATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGATCGACACTTTATTGTTGCACC
CTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTACAAAAGTGTCGATACATTATTT
AGACAT
Found at i:970883 original size:20 final size:19
Alignment explanation
Indices: 970837--970897 Score: 68
Period size: 20 Copynumber: 3.1 Consensus size: 19
970827 TCCGGTAACG
970837 TTTTACCGGTTTTATCATT
1 TTTTACCGGTTTTATCATT
*
970856 TTGATACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
* * *
970877 TTTTACCTGTTATATCGTT
1 TTTTACCGGTTTTATCATT
970896 TT
1 TT
970898 GGATCGATAC
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
19 5 0.14
20 27 0.77
21 3 0.09
ACGTcount: A:0.18, C:0.15, G:0.11, T:0.56
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:970927 original size:181 final size:182
Alignment explanation
Indices: 970647--971095 Score: 693
Period size: 181 Copynumber: 2.5 Consensus size: 182
970637 GACACTTTCA
* *
970647 CCGGTATCGTTTTACCGGTTTTATCATTTTGATATCGGTTTTATCATATTTTTACCTGTTATATC
1 CCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTTTATCATATTTTTACCTGTTATATC
* * * *
970712 GTTGTGGATCGATATATTTTTTTAAAGTATCGACACATTATAGGCGCTAAAACTGCTTCTCTTTT
66 GTTTTGGATCGATACATTTTTTAAAAGTATCGACACATTATAGGAGCTAAAACTGCTTCTCTTTT
* *
970777 AAATTCACAAAGTGTCGATCCTTATA-TAAAGTATCGACACTTTCAATATAT
131 AAATTCACAAAGTGTCGATCCTTATATTAAAGTACCGACACTTTAAATATAT
970828 CCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTTTATCATATTTTTACCTGTTATATC
1 CCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTTTATCATATTTTTACCTGTTATATC
* * **
970893 GTTTTGGATCGATACATTTTTTAAAAGTATCGACACTTTATAGTATTTAAAACTGCTTCTCTTTT
66 GTTTTGGATCGATACATTTTTTAAAAGTATCGACACATTATAGGAGCTAAAACTGCTTCTCTTTT
* *
970958 AAATTCACGAAGTGTCGATCCTTATATTAAAGTACCGACACTTTAAATGTAT
131 AAATTCACAAAGTGTCGATCCTTATATTAAAGTACCGACACTTTAAATATAT
* * * ** * *
971010 CTGGTAGCGCTTTACCGGTTTTATCATTTCAATACCGGTTTTGTCATAGTTTTACCTGTTATATC
1 CCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTTTATCATATTTTTACCTGTTATATC
*
971075 GTTTTGGATCGACACATTTTT
66 GTTTTGGATCGATACATTTTT
971096 AATTTGGATC
Statistics
Matches: 245, Mismatches: 22, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
181 145 0.59
182 100 0.41
ACGTcount: A:0.26, C:0.17, G:0.14, T:0.43
Consensus pattern (182 bp):
CCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTTTATCATATTTTTACCTGTTATATC
GTTTTGGATCGATACATTTTTTAAAAGTATCGACACATTATAGGAGCTAAAACTGCTTCTCTTTT
AAATTCACAAAGTGTCGATCCTTATATTAAAGTACCGACACTTTAAATATAT
Found at i:975902 original size:13 final size:13
Alignment explanation
Indices: 975884--975908 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
975874 CAAGAAAACC
975884 AAAACAATATGGA
1 AAAACAATATGGA
975897 AAAACAATATGG
1 AAAACAATATGG
975909 GGTCAATGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.08, G:0.16, T:0.16
Consensus pattern (13 bp):
AAAACAATATGGA
Found at i:980336 original size:14 final size:14
Alignment explanation
Indices: 980298--980351 Score: 63
Period size: 14 Copynumber: 3.8 Consensus size: 14
980288 ATTTTAAATA
*
980298 ATTTACATTTACAT
1 ATTTACATTTGCAT
*
980312 TTTTACATTTGCAT
1 ATTTACATTTGCAT
980326 ATTTACATTTGGCAT
1 ATTTACATTT-GCAT
* *
980341 CTTTGCATTTG
1 ATTTACATTTG
980352 TATTGCACAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
14 22 0.65
15 12 0.35
ACGTcount: A:0.24, C:0.15, G:0.09, T:0.52
Consensus pattern (14 bp):
ATTTACATTTGCAT
Done.