genome.fa.s7827.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007827.1 Hibiscus syriacus cultivar Beakdansim tig00110166_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61083

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2104--2254	80	1.9	80	92	0	257	15	31	21	31	1.95
2369--2668	54	5.5	54	78	8	293	25	26	22	25	2.00
2372--2582	113	1.9	113	91	2	352	25	25	23	25	2.00
2372--2614	27	8.8	28	66	21	120	25	26	22	25	2.00
2372--2668	113	2.7	110	83	4	305	25	26	22	25	2.00
4889--4928	20	2.0	20	85	5	53	62	2	0	35	1.09
5044--5078	2	17.5	2	100	0	70	0	48	0	51	1.00
5078--5120	2	21.5	2	100	0	86	48	0	0	51	1.00
8445--8482	13	3.0	13	88	3	51	47	7	21	23	1.77
11540--11792	45	5.6	45	88	0	353	28	19	22	28	1.98
11540--11792	135	1.9	135	90	3	411	28	19	22	28	1.98
12857--12964	54	2.0	54	85	3	146	25	24	13	37	1.92
18301--18348	12	3.8	13	78	13	55	68	0	10	20	1.18
18313--18356	20	2.2	20	91	0	70	70	2	9	18	1.24
21388--21429	18	2.4	17	81	18	50	69	4	9	16	1.33
22673--22703	3	10.0	3	93	6	53	67	0	0	32	0.91
22673--22707	16	2.2	16	100	0	70	68	0	0	31	0.90
22674--22700	13	2.1	13	100	0	54	70	0	0	29	0.88
24951--25151	58	3.5	59	76	9	162	36	16	4	41	1.71
30638--30742	24	4.4	24	86	4	124	32	19	22	25	1.97
30707--30757	23	2.2	24	89	3	77	31	27	19	21	1.97
30855--31049	57	3.4	59	78	11	179	37	16	3	42	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33677--33718	12	3.5	12	81	9	50	54	0	0	45	0.99
41940--41991	22	2.3	22	81	12	61	38	1	3	55	1.29
41983--42059	23	3.3	23	78	12	70	46	0	1	51	1.09
41955--42041	35	2.5	36	80	12	103	43	0	2	54	1.13
43458--43552	42	2.3	42	84	0	127	25	31	21	22	1.98
43541--43611	21	3.4	20	66	14	54	29	28	19	22	1.98
44067--44111	18	2.4	19	81	3	56	44	13	0	42	1.43
44070--44198	49	2.7	49	89	3	181	42	13	4	38	1.66
44113--44190	24	3.2	24	66	8	59	39	14	6	39	1.71
46729--46771	20	2.1	21	86	4	61	32	6	0	60	1.23
47781--47906	25	5.0	25	67	10	76	39	34	0	25	1.62
47785--47903	51	2.3	51	89	0	175	38	34	0	26	1.62
47782--47876	25	3.7	25	71	4	82	35	36	1	26	1.64
48710--48735	11	2.4	11	100	0	52	42	23	11	23	1.86
49347--49422	23	3.3	23	90	0	116	38	6	18	36	1.77
49574--49624	23	2.2	23	89	0	75	37	9	19	33	1.85
49358--49624	106	2.5	109	85	2	369	42	9	14	32	1.79
49494--49719	87	2.6	87	89	2	352	42	8	15	33	1.76
49966--50071	39	2.8	38	72	18	105	50	0	3	45	1.19
49992--50043	19	2.7	19	75	3	59	63	0	3	32	1.12
49993--50056	22	3.2	20	68	23	55	57	0	3	39	1.14
50097--50158	29	2.1	30	82	8	74	50	0	1	48	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50419--50461	21	2.0	21	86	0	59	41	2	13	41	1.57
50826--50892	27	2.5	26	73	21	68	49	1	1	47	1.19
51020--51686	198	3.4	197	89	3	950	38	14	16	30	1.88
51690--51746	23	2.4	23	73	2	60	38	15	10	35	1.82
51699--51938	87	2.8	87	88	0	374	32	14	9	43	1.78
51861--51920	22	2.7	22	78	2	66	30	16	8	45	1.77
54212--54324	48	2.4	48	75	13	108	32	7	14	45	1.74
60875--60912	17	2.2	18	85	4	51	34	2	0	63	1.09

Tables:   1

The End!