Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007829.1 Hibiscus syriacus cultivar Beakdansim tig00110168_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113615

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1743--1800
22
2.6
22
76
7
64
65
8
17
8
1.45
5507--5558
21
2.6
21
87
6
72
30
15
7
46
1.74
14796--14850
21
2.5
22
82
8
67
23
5
1
69
1.19
16108--16240
28
4.9
28
69
15
118
41
11
18
28
1.85
20343--20372
13
2.4
13
94
5
53
43
0
30
26
1.55
23760--23812
21
2.5
21
100
0
106
18
18
0
62
1.33
24790--24841
19
2.6
21
90
6
81
46
5
13
34
1.67
34548--34599
19
2.6
21
84
6
72
46
5
11
36
1.64
38811--38843
13
2.5
13
100
0
66
27
9
30
33
1.88
39228--39287
30
2.0
31
86
3
86
28
8
10
53
1.63
40663--40714
21
2.6
21
90
6
81
32
13
7
46
1.72
41125--41155
15
2.1
15
93
0
53
12
16
0
70
1.16
44788--44839
21
2.6
21
87
6
72
32
15
7
44
1.75
46115--46165
20
2.6
20
90
3
77
35
15
5
43
1.71
46897--46933
13
3.1
12
88
11
58
83
0
16
0
0.64
46884--46956
21
3.4
22
75
17
73
79
2
15
2
0.96
46878--46970
42
2.3
40
80
12
102
77
3
16
3
1.03
49982--50033
21
2.6
21
90
6
81
32
13
7
46
1.72
54072--54123
21
2.6
21
84
6
72
32
11
7
48
1.68
55339--55398
30
2.0
31
86
3
86
28
8
10
53
1.63
56294--56344
19
2.6
20
90
3
77
35
13
7
43
1.73
57075--57111
13
3.1
12
88
11
58
83
0
16
0
0.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57062--57134
21
3.4
22
75
17
73
79
2
15
2
0.96
57056--57148
42
2.3
40
80
12
102
77
3
16
3
1.03
59607--59666
30
2.0
31
86
3
86
28
8
10
53
1.63
60562--60612
19
2.6
20
87
3
68
35
11
7
45
1.70
65485--65553
33
2.1
33
83
5
86
31
1
36
30
1.67
69543--69611
33
2.1
33
83
5
86
31
1
36
30
1.67
83599--83648
19
2.6
19
90
0
73
46
6
16
32
1.71
86618--86751
28
4.9
28
69
14
109
27
20
10
41
1.84
86618--86672
27
2.0
28
89
3
85
27
18
10
43
1.83
86618--86778
80
2.0
80
92
2
270
27
22
10
39
1.87
87697--87754
26
2.2
26
90
0
98
18
12
24
44
1.84
88015--88078
26
2.4
26
89
5
101
73
7
6
12
1.24
97004--97051
21
2.2
22
85
7
62
0
12
10
77
1.00
97013--97051
12
3.6
11
87
12
55
0
10
7
82
0.86
97021--97053
12
2.8
12
100
0
66
0
12
9
78
0.95
101361--101395
17
2.0
17
88
5
52
62
0
25
11
1.28
106137--106270
28
4.9
28
69
14
118
28
19
11
41
1.86
106137--106297
80
2.0
80
92
0
268
28
21
11
38
1.88
107999--108050
21
2.6
20
90
6
79
36
13
5
44
1.68
108592--108632
21
2.0
21
90
9
66
68
4
12
14
1.36
112177--112237
1
61.0
1
81
0
50
0
6
6
86
0.69
112177--112238
11
5.6
11
84
7
72
0
6
8
85
0.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112170--112237
33
2.1
32
89
8
102
0
7
8
83
0.80
112554--112598
11
4.1
11
82
5
56
71
4
11
13
1.29
112554--112595
22
1.9
22
90
9
68
69
4
11
14
1.34
113077--113119
22
1.9
23
85
4
61
53
13
4
27
1.60

Tables:   1

The End!