Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000783.1 Hibiscus syriacus cultivar Beakdansim tig00001520_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82931

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9469--9533
24
2.7
24
90
2
103
26
13
41
18
1.88
19809--19930
12
10.7
11
73
21
101
42
3
2
51
1.31
19833--19927
45
2.1
45
100
0
190
44
4
2
49
1.33
19864--19929
2
34.5
2
78
19
70
45
3
1
50
1.26
25566--25603
12
3.3
12
85
10
53
31
0
0
68
0.90
28365--28480
32
3.6
32
85
2
144
31
15
18
34
1.93
33571--33618
21
2.1
23
88
11
73
16
14
2
66
1.34
40871--41280
188
2.2
191
83
6
512
46
8
5
39
1.58
43124--43195
15
4.9
15
79
3
92
43
6
18
31
1.76
43123--43195
30
2.5
29
95
2
128
43
6
17
31
1.75
43178--43247
20
3.5
20
96
0
131
40
10
14
35
1.79
43415--43474
26
2.3
26
85
8
77
53
1
1
43
1.20
43413--43503
28
3.2
28
78
18
84
52
2
1
43
1.20
43413--43485
29
2.7
26
76
21
78
56
1
1
41
1.16
43453--43498
23
2.0
23
83
8
58
56
2
0
41
1.11
43765--43884
42
2.9
42
93
0
204
45
19
20
15
1.86
54259--54338
16
5.1
16
83
6
101
47
31
15
6
1.70
54259--54329
15
4.6
15
82
5
79
47
30
14
7
1.70
54258--54338
31
2.6
32
84
5
103
48
30
14
6
1.69
55690--55728
20
2.0
20
85
10
53
71
2
10
15
1.23
55737--55815
14
5.2
14
68
15
50
79
3
5
11
1.01
56382--56424
19
2.3
19
92
4
70
13
6
0
79
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58486--58571
31
2.8
31
94
3
149
30
17
8
44
1.78
60219--60275
20
3.0
20
70
19
68
3
14
33
49
1.60
60230--60270
16
2.7
15
79
20
57
4
14
31
48
1.65
60218--60277
19
3.3
19
73
17
72
3
15
31
50
1.60
60771--60846
16
4.8
16
93
3
127
47
30
15
6
1.71
60770--60846
31
2.4
32
93
2
129
48
29
15
6
1.70
62203--62241
20
2.0
20
85
10
53
71
2
10
15
1.23
62895--62937
19
2.3
19
92
4
70
13
6
0
79
0.93
64999--65085
31
2.8
31
96
1
158
29
17
8
44
1.77
70966--71033
31
2.3
31
84
5
95
36
22
5
35
1.78
73527--73586
29
2.0
31
87
6
88
36
6
15
41
1.73
73656--73716
19
3.2
19
88
0
86
40
11
13
34
1.80
73799--73840
21
2.0
21
95
0
75
23
21
28
26
1.99
75681--75728
20
2.5
19
80
6
60
52
6
10
31
1.60
76782--76808
13
2.1
13
100
0
54
37
0
44
18
1.50
76940--76980
20
2.0
20
90
0
64
36
2
9
51
1.48
77174--77278
35
3.0
35
92
0
183
20
34
28
17
1.95

Tables:   1

The End!