Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007832.1 Hibiscus syriacus cultivar Beakdansim tig00110174_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4020056
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 21
Found at i:757 original size:33 final size:33
Alignment explanation
Indices: 720--785 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
710 CATCTTAATA
*
720 TCACCCCTTAACACCCCAACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
* *
753 TCACCCCTCAACACCTCTACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
786 CCATCTATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.23, C:0.48, G:0.00, T:0.29
Consensus pattern (33 bp):
TCACCCCTCAACACCCCAACTTCTTTCACCACT
Found at i:859 original size:21 final size:21
Alignment explanation
Indices: 819--883 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
809 CCCCTTATTC
* *
819 CTCTCGAGTGTATCTTCGACT
1 CTCTCGAGTTTCTCTTCGACT
*
840 CTCTCGAGTTTCTCTACGACT
1 CTCTCGAGTTTCTCTTCGACT
* *
861 -TGATCAAGTTTCTCTTCGACT
1 CT-CTCGAGTTTCTCTTCGACT
882 CT
1 CT
884 TGATTGTCTT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
20 1 0.03
21 34 0.94
22 1 0.03
ACGTcount: A:0.15, C:0.29, G:0.15, T:0.40
Consensus pattern (21 bp):
CTCTCGAGTTTCTCTTCGACT
Found at i:3164 original size:21 final size:21
Alignment explanation
Indices: 3103--3164 Score: 81
Period size: 20 Copynumber: 3.0 Consensus size: 21
3093 ATATATCCGG
3103 TATTATTTTACCGGTTTTATCA
1 TATT-TTTTACCGGTTTTATCA
*
3125 T-TTTGTTACCGGTTTTATCA
1 TATTTTTTACCGGTTTTATCA
* *
3145 TATTTTTTACCTGTTATATC
1 TATTTTTTACCGGTTTTATC
3165 GTTGTGGATC
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
20 17 0.49
21 17 0.49
22 1 0.03
ACGTcount: A:0.19, C:0.15, G:0.10, T:0.56
Consensus pattern (21 bp):
TATTTTTTACCGGTTTTATCA
Found at i:3299 original size:20 final size:20
Alignment explanation
Indices: 3273--3318 Score: 76
Period size: 20 Copynumber: 2.3 Consensus size: 20
3263 CACTTTTAAA
3273 TTTACCGGTTTTATCAT-TT
1 TTTACCGGTTTTATCATATT
3292 TGTTACCGGTTTTATCATATT
1 T-TTACCGGTTTTATCATATT
3313 TTTACC
1 TTTACC
3319 TGGTATATCG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.17, C:0.17, G:0.11, T:0.54
Consensus pattern (20 bp):
TTTACCGGTTTTATCATATT
Found at i:3749 original size:226 final size:220
Alignment explanation
Indices: 3386--3824 Score: 688
Period size: 226 Copynumber: 2.0 Consensus size: 220
3376 AAAAAACTGC
3386 TTTTAAAGTTATGTAATTTATGTTTCAATTTATTTAATAGTGTTTCATGTTTCCACAATATTAAT
1 TTTTAAAGTTATGTAATTTATGTTTCAATTTATTTAATAGTGTTTCATGTTTCCACAATATTAAT
* *
3451 TTAATAATTTAATTTACACAAAATTATATTTGATTGTTTTGATATTTTATAAAATATTATTTAGA
66 TTAATAATTTAATTTACACAAAAATATATTTGATTGTTTTAATATTTTATAAAATATTATTTAGA
* *
3516 ATTTAAATTTAACAAT-TTAAC-CAATATAATAATAAATATGTTTTCAACAGTGAAATAAATATG
131 ATTTAAATTTAACAATATTAACTAAAGATAATAATAAATA--TTTTC-ACAGTGAAATAAATATG
*
3579 GACACTTTTATAAAAATGATATATACTT
193 GACACTTTTATAAAAAGGATATATACTT
3607 TTTTGAAAGTTATGTAATTTATGTTTCAATTT-TTTAATAGTGTTTCATGTTTTCCACCTACAAT
1 TTTT-AAAGTTATGTAATTTATGTTTCAATTTATTTAATAGTGTTTCATG-TTT---CC-ACAAT
*
3671 ATTAATTTAATAATTTCATTTACACAAAAA-ATTATTTGATTGTTTTAATATTTTATAAAATATT
60 ATTAATTTAATAATTTAATTTACACAAAAATA-TATTTGATTGTTTTAATATTTTATAAAATATT
* *
3735 ATTTAGATTTTAAATTTAACAATATTAACTAAAGATAATAATAAATATTTTCACAGTGAAATAAG
124 ATTTAGAATTTAAATTTAACAATATTAACTAAAGATAATAATAAATATTTTCACAGTGAAATAAA
3800 TATGGACACTTTTATAAAAAGGATA
189 TATGGACACTTTTATAAAAAGGATA
3825 GATAATTTAC
Statistics
Matches: 201, Mismatches: 8, Indels: 14
0.90 0.04 0.06
Matches are distributed among these distances:
221 21 0.10
222 30 0.15
225 39 0.19
226 91 0.45
227 5 0.02
228 15 0.07
ACGTcount: A:0.40, C:0.07, G:0.08, T:0.45
Consensus pattern (220 bp):
TTTTAAAGTTATGTAATTTATGTTTCAATTTATTTAATAGTGTTTCATGTTTCCACAATATTAAT
TTAATAATTTAATTTACACAAAAATATATTTGATTGTTTTAATATTTTATAAAATATTATTTAGA
ATTTAAATTTAACAATATTAACTAAAGATAATAATAAATATTTTCACAGTGAAATAAATATGGAC
ACTTTTATAAAAAGGATATATACTT
Found at i:4334 original size:17 final size:17
Alignment explanation
Indices: 4294--4336 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
4284 CATTTTGTCT
*
4294 TTTA-TATTATTTTTAA
1 TTTATTATTATTTGTAA
4310 -TTATTTATTATTTGTAA
1 TTTA-TTATTATTTGTAA
4327 TTTATTATTA
1 TTTATTATTA
4337 ATATTATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
15 3 0.13
17 17 0.74
18 3 0.13
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (17 bp):
TTTATTATTATTTGTAA
Found at i:6066 original size:131 final size:131
Alignment explanation
Indices: 5869--6492 Score: 1054
Period size: 131 Copynumber: 4.8 Consensus size: 131
5859 GCTCGGAAGG
* **
5869 CTTACAGATGACCTAGAGGATTTAAGATAAAAAAA-AATTGAAAATCAGTTTCTTAAAATCTCAT
1 CTTACAGATGACCCAGAGGATTTAAGATAAAAAAACCTTTGAAAATCAGTTTCTTAAAATCTCAT
* *
5933 TTGAAAATATCCTGCATTGGAGGTCTTATGGATGACCCTGAGGTCTTATCATCTTGCACTGTAGG
66 TTGAAAACATCCTGCACTGGAGGTCTTATGGATGACCCTGAGGTCTTATCATCTTGCACTGTAGG
5998 T
131 T
*
5999 CTTACAGATGACCC-GAAGGATTTAAGATAAAAAAACCTTTGAAAATCAGTTTCTTAAAATCTTA
1 CTTACAGATGACCCAG-AGGATTTAAGATAAAAAAACCTTTGAAAATCAGTTTCTTAAAATCTCA
6063 TTTGAAAACATCCTGCACTGGAGGTCTTATGGATGACCCTGAGGTCTTATCATCTTGCACTGTAG
65 TTTGAAAACATCCTGCACTGGAGGTCTTATGGATGACCCTGAGGTCTTATCATCTTGCACTGTAG
6128 GT
130 GT
* * *
6130 CTTATAGATGACCCAGAGGATTTAAGATCAAAAAACCTTTGAAAATCATTTTCTTAAAATCTCAT
1 CTTACAGATGACCCAGAGGATTTAAGATAAAAAAACCTTTGAAAATCAGTTTCTTAAAATCTCAT
* * *
6195 TTGAAAACATCCTGCACTGAAGGTCTTACGGATGGCCCTGAGGTCTTATCATCTTGCACTGTAGG
66 TTGAAAACATCCTGCACTGGAGGTCTTATGGATGACCCTGAGGTCTTATCATCTTGCACTGTAGG
6260 T
131 T
* *
6261 CTTACATATGACCCGGAGGATTTAAGATAAAAAAACCTTTGAAAATCAGTTTCTTAAAATCTCAT
1 CTTACAGATGACCCAGAGGATTTAAGATAAAAAAACCTTTGAAAATCAGTTTCTTAAAATCTCAT
*
6326 TTGAAAACATCCTGCACTGGAGGTCTTATGGATGGCCCTGAGGTCTTATCATCTTGCACTGTAGG
66 TTGAAAACATCCTGCACTGGAGGTCTTATGGATGACCCTGAGGTCTTATCATCTTGCACTGTAGG
6391 T
131 T
* *
6392 CTTACAGATGACCCAGAGGATTTAAGATTAAAAAACCTTTGAAAATCAATTTCTTAAAATCTCAT
1 CTTACAGATGACCCAGAGGATTTAAGATAAAAAAACCTTTGAAAATCAGTTTCTTAAAATCTCAT
* *
6457 TTGAAAACATCCTGCACTGAAGGTCTTACGGATGAC
66 TTGAAAACATCCTGCACTGGAGGTCTTATGGATGAC
6493 TCGAAGGCTT
Statistics
Matches: 464, Mismatches: 27, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
129 1 0.00
130 32 0.07
131 430 0.93
132 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (131 bp):
CTTACAGATGACCCAGAGGATTTAAGATAAAAAAACCTTTGAAAATCAGTTTCTTAAAATCTCAT
TTGAAAACATCCTGCACTGGAGGTCTTATGGATGACCCTGAGGTCTTATCATCTTGCACTGTAGG
T
Found at i:6804 original size:45 final size:45
Alignment explanation
Indices: 6456--7045 Score: 811
Period size: 45 Copynumber: 12.8 Consensus size: 45
6446 TAAAATCTCA
* * * *
6456 TTTGAAAACATCCTGCACTGAAGGTCTTACGGATGACTCGAAGGCTTT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG---T
* * *
6504 TTTGAAAACATCCTGCACTGAAGGTCTTACGGATGACCCGAAGGCTTT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG---T
* * * *
6552 TTTGAAAACATCCTGCACTGAAGGTCTTACGGATGACCCGAAGACTTT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAG---GT
* * * ** *
6600 TTTGAAAACATCCTACACTGAAGGTCTTATGGATGACCTGAAGGCTT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG--T
* *
6647 TTTGAAAACATCATGCACTGAAGGTCTTACGGATGACCCGAAGGCTT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG--T
* * *
6694 TTTGAAAATATCATGCACTGAAGGTCTTACGGATGACCCGAAGGTAT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG--T
6741 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGT
*
6786 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGT
6831 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGT
* *
6876 TTTGAAAACATCATGCACTGAAGGGCTTATAGATGACCCGAAGGC
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGT
6921 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGT
*
6966 TTTGTAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGT
7011 TTTGAAAACATCATGCACTGAAGGGCTTACAGATG
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATG
7046 TGGGAAATAG
Statistics
Matches: 513, Mismatches: 24, Indels: 13
0.93 0.04 0.02
Matches are distributed among these distances:
45 253 0.49
47 129 0.25
48 131 0.26
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.25
Consensus pattern (45 bp):
TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGT
Found at i:7740 original size:22 final size:22
Alignment explanation
Indices: 7715--7793 Score: 122
Period size: 22 Copynumber: 3.6 Consensus size: 22
7705 AATAAGGCTT
*
7715 TCATCTTTGAAAAGAGAATCTA
1 TCATCTTTGAAGAGAGAATCTA
*
7737 TCATCTTTGAAGAGAAAATCTA
1 TCATCTTTGAAGAGAGAATCTA
* *
7759 CCATATTTGAAGAGAGAATCTA
1 TCATCTTTGAAGAGAGAATCTA
7781 TCATCTTTGAAGA
1 TCATCTTTGAAGA
7794 ATGTAGATGT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 50 1.00
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.32
Consensus pattern (22 bp):
TCATCTTTGAAGAGAGAATCTA
Found at i:15103 original size:46 final size:46
Alignment explanation
Indices: 15036--15123 Score: 151
Period size: 46 Copynumber: 1.9 Consensus size: 46
15026 AGGTATAAAT
15036 CCTAACCTCATGATTTCTAGTTCCATGCTTTGTTTAGAAAAATTAA
1 CCTAACCTCATGATTTCTAGTTCCATGCTTTGTTTAGAAAAATTAA
*
15082 CCTAA-CTGCATGATTTCTAGTTTCATGCTTTGTTTAGAAAAA
1 CCTAACCT-CATGATTTCTAGTTCCATGCTTTGTTTAGAAAAA
15124 AATGAAATCA
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
45 2 0.05
46 38 0.95
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.40
Consensus pattern (46 bp):
CCTAACCTCATGATTTCTAGTTCCATGCTTTGTTTAGAAAAATTAA
Found at i:15578 original size:26 final size:28
Alignment explanation
Indices: 15548--15606 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 28
15538 TGTTAATAAG
*
15548 AAAAATAAT-A-TACATATAAATATTAT
1 AAAAATAATAAGTACATATAAAAATTAT
* *
15574 GAAAATAATAAGTATATATAAAAATTAT
1 AAAAATAATAAGTACATATAAAAATTAT
15602 AAAAA
1 AAAAA
15607 GAAAGAATTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 8 0.30
27 1 0.04
28 18 0.67
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (28 bp):
AAAAATAATAAGTACATATAAAAATTAT
Found at i:15609 original size:60 final size:54
Alignment explanation
Indices: 15516--15633 Score: 123
Period size: 60 Copynumber: 2.1 Consensus size: 54
15506 ATTTAATACT
* *
15516 TGAAAATAAAATAAAATAAAAATGTTAATAAGAAA-AATAATATACATATAAATATTA
1 TGAAAATAAAATAAAATAAAAATGTTAAAAAGAAAGAAT--TATAAAT-TAAATA-TA
*
15573 TGAAAATAATAAGTATATATAAAAAT-TATAAAAAGAAAGAATTATAAATTAAATATA
1 TGAAAATAA-AA-TA-AAATAAAAATGT-TAAAAAGAAAGAATTATAAATTAAATATA
15630 TGAA
1 TGAA
15634 TTTTTAATTT
Statistics
Matches: 53, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
57 15 0.28
58 8 0.15
59 9 0.17
60 18 0.34
61 3 0.06
ACGTcount: A:0.64, C:0.01, G:0.07, T:0.29
Consensus pattern (54 bp):
TGAAAATAAAATAAAATAAAAATGTTAAAAAGAAAGAATTATAAATTAAATATA
Found at i:16517 original size:3 final size:3
Alignment explanation
Indices: 16509--16573 Score: 73
Period size: 3 Copynumber: 22.7 Consensus size: 3
16499 AAAAATAAAA
* * *
16509 AAT AAT AAT AAT AAT AAT -CT ATT AAT AAT AAT ACT AAT -AT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
16555 AAT -AT AAT AAA AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AA
16574 ATAAAAAGGA
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
2 5 0.10
3 47 0.90
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:16536 original size:17 final size:17
Alignment explanation
Indices: 16511--16573 Score: 78
Period size: 17 Copynumber: 3.9 Consensus size: 17
16501 AAATAAAAAA
16511 TAATAATAATAATAATC
1 TAATAATAATAATAATC
*
16528 TATTAATAATAAT-A-C
1 TAATAATAATAATAATC
*
16543 TAAT-ATAATAATAATA
1 TAATAATAATAATAATC
*
16559 TAATAAAAATAATAA
1 TAATAATAATAATAA
16574 ATAAAAAGGA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
14 8 0.21
15 5 0.13
16 5 0.13
17 21 0.54
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (17 bp):
TAATAATAATAATAATC
Found at i:16536 original size:20 final size:20
Alignment explanation
Indices: 16509--16573 Score: 82
Period size: 20 Copynumber: 3.4 Consensus size: 20
16499 AAAAATAAAA
*
16509 AATAATAATAATAATAATCT
1 AATAATAATAATAATAATAT
* *
16529 ATTAATAATAATACTAATAT
1 AATAATAATAATAATAATAT
16549 AATAATAAT-ATAATAA-A-
1 AATAATAATAATAATAATAT
16566 AATAATAA
1 AATAATAA
16574 ATAAAAAGGA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
17 8 0.20
18 1 0.03
19 6 0.15
20 25 0.62
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (20 bp):
AATAATAATAATAATAATAT
Found at i:16550 original size:11 final size:11
Alignment explanation
Indices: 16509--16573 Score: 66
Period size: 11 Copynumber: 6.2 Consensus size: 11
16499 AAAAATAAAA
16509 AATAATAATAAT
1 AATAAT-ATAAT
* *
16521 AATAATCTATT
1 AATAATATAAT
16532 AAT-A-ATAAT
1 AATAATATAAT
*
16541 ACTAATATAAT
1 AATAATATAAT
16552 AATAATATAAT
1 AATAATATAAT
16563 AA-AA-ATAAT
1 AATAATATAAT
16572 AA
1 AA
16574 ATAAAAAGGA
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
9 12 0.27
10 4 0.09
11 23 0.51
12 6 0.13
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (11 bp):
AATAATATAAT
Found at i:16572 original size:14 final size:14
Alignment explanation
Indices: 16513--16580 Score: 66
Period size: 14 Copynumber: 4.7 Consensus size: 14
16503 ATAAAAAATA
*
16513 ATAATAATAATAAT
1 ATAATAAAAATAAT
* * *
16527 CTATTAATAATAAT
1 ATAATAAAAATAAT
16541 ACTAATATAATAATAAT
1 A-TAATA-AA-AATAAT
16558 ATAATAAAAATAAT
1 ATAATAAAAATAAT
16572 A-AATAAAAA
1 ATAATAAAAA
16581 GGACAAACAC
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
13 8 0.17
14 19 0.41
15 6 0.13
16 6 0.13
17 7 0.15
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (14 bp):
ATAATAAAAATAAT
Found at i:16831 original size:8 final size:7
Alignment explanation
Indices: 16809--16865 Score: 57
Period size: 7 Copynumber: 8.3 Consensus size: 7
16799 CATTTTGTCT
16809 TTTATTA
1 TTTATTA
16816 -TTATTA
1 TTTATTA
16822 TTTAATTA
1 TTT-ATTA
16830 TTTATTA
1 TTTATTA
16837 TTT-TTAA
1 TTTATT-A
16844 TTTATTA
1 TTTATTA
*
16851 -TTAATA
1 TTTATTA
*
16857 TATATTA
1 TTTATTA
16864 TT
1 TT
16866 AGAATACATA
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
6 13 0.32
7 19 0.46
8 9 0.22
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (7 bp):
TTTATTA
Found at i:16831 original size:14 final size:15
Alignment explanation
Indices: 16808--16853 Score: 51
Period size: 17 Copynumber: 3.0 Consensus size: 15
16798 GCATTTTGTC
16808 TTTT-ATTATTATTA
1 TTTTAATTATTATTA
16822 -TTTAATTATTTATTA
1 TTTTAATTA-TTATTA
16837 TTTTTAATTTATTATTA
1 -TTTTAA-TTATTATTA
16854 ATATATATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
13 3 0.11
14 4 0.15
15 6 0.22
17 11 0.41
18 3 0.11
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTTAATTATTATTA
Found at i:18167 original size:3 final size:3
Alignment explanation
Indices: 18159--18202 Score: 70
Period size: 3 Copynumber: 14.3 Consensus size: 3
18149 TTTGGGCCTG
*
18159 TAA TAA TAA TAA TATT TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA T
18203 TTTAAAAATA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
3 36 0.95
4 2 0.05
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:31298 original size:21 final size:22
Alignment explanation
Indices: 31259--31299 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
31249 AAGACTATTT
* *
31259 TCATTTTTTTAATTTTGAAACA
1 TCATTTTTGTAATTGTGAAACA
31281 TCATTTTTGT-ATTGTGAAA
1 TCATTTTTGTAATTGTGAAA
31300 ATAGAGTCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.29, C:0.07, G:0.10, T:0.54
Consensus pattern (22 bp):
TCATTTTTGTAATTGTGAAACA
Found at i:33317 original size:45 final size:46
Alignment explanation
Indices: 33242--33362 Score: 178
Period size: 46 Copynumber: 2.7 Consensus size: 46
33232 TGCACTAAGG
*
33242 GTGCATCGATGCAT-AAATGCATTCGATGTTTT-A-AAATAGCCT-GA
1 GTGCATCGATGCATAAAATGCATTCGATGTTTTCATAAA-A-ACTGGA
33286 GTGCATCGATGCATAAAATGCATTCGATGTTTTCATAAAAACTGGA
1 GTGCATCGATGCATAAAATGCATTCGATGTTTTCATAAAAACTGGA
*
33332 GTGCATCGATGCATAAAATGCATTCAATGTT
1 GTGCATCGATGCATAAAATGCATTCGATGTT
33363 CAATTTATTC
Statistics
Matches: 71, Mismatches: 2, Indels: 6
0.90 0.03 0.08
Matches are distributed among these distances:
44 14 0.20
45 20 0.28
46 34 0.48
47 3 0.04
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (46 bp):
GTGCATCGATGCATAAAATGCATTCGATGTTTTCATAAAAACTGGA
Found at i:40542 original size:123 final size:123
Alignment explanation
Indices: 40383--40608 Score: 407
Period size: 123 Copynumber: 1.8 Consensus size: 123
40373 CTTTTGTTCA
* *
40383 ATTTACTTTTTATTTTATTTTAGTGTCATTTGTTAAAAAGTTAAAGGCAAACTAACGTGGTACTT
1 ATTTACTTTTTATTTCATTTTAGTGTCATTTGTTAAAAAGTTAAAGGCAAACTAACATGGTACTT
* *
40448 TTTTAATATTTTTTAATTACCTCAATTTTTAATTTTTTTTTTCAAAATCACACATAAC
66 TTTTAATATTTTTTAATTACCTCAACTTTTAAATTTTTTTTTCAAAATCACACATAAC
40506 ATTTACTTTTTATTTCATTTTAGTGTCATTTGTTAAAAAGTTAAAGGCAAACTAACATGGTACTT
1 ATTTACTTTTTATTTCATTTTAGTGTCATTTGTTAAAAAGTTAAAGGCAAACTAACATGGTACTT
*
40571 TTTTAATATTTTTTAGTTACCTCAACTTTTAAATTTTT
66 TTTTAATATTTTTTAATTACCTCAACTTTTAAATTTTT
40609 AATATTTTGG
Statistics
Matches: 98, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
123 98 1.00
ACGTcount: A:0.31, C:0.11, G:0.08, T:0.50
Consensus pattern (123 bp):
ATTTACTTTTTATTTCATTTTAGTGTCATTTGTTAAAAAGTTAAAGGCAAACTAACATGGTACTT
TTTTAATATTTTTTAATTACCTCAACTTTTAAATTTTTTTTTCAAAATCACACATAAC
Found at i:40718 original size:144 final size:144
Alignment explanation
Indices: 40543--40807 Score: 494
Period size: 144 Copynumber: 1.8 Consensus size: 144
40533 ATTTGTTAAA
*
40543 AAGTTAAAGGCAAACTAACATGGTACTTTTTTAATATTTTTTAGTTACCTCAACTTTTAAATTTT
1 AAGTTAAAGGCAAACTAACATGGTACCTTTTTAATATTTTTTAGTTACCTCAACTTTTAAATTTT
*
40608 TAATATTTTGGGTAAATTACATGTTTAATATCTAAATTATCACTTTTGTTCCATTTACTTTTTAT
66 TAATATTTTGGGTAAACTACATGTTTAATATCTAAATTATCACTTTTGTTCCATTTACTTTTTAT
40673 TTCATTTTAGTATC
131 TTCATTTTAGTATC
* *
40687 AAGTTAAAGGCAAACTAACGTGGTACCTTTTTAATATTTTTTAGTTACCTCAACTTTTAATTTTT
1 AAGTTAAAGGCAAACTAACATGGTACCTTTTTAATATTTTTTAGTTACCTCAACTTTTAAATTTT
40752 TAATATTTTGGGTAAACTACATGTTTAATATCTAAATTATCACTTTTGTTCCATTT
66 TAATATTTTGGGTAAACTACATGTTTAATATCTAAATTATCACTTTTGTTCCATTT
40808 TAGTATCTCA
Statistics
Matches: 117, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
144 117 1.00
ACGTcount: A:0.31, C:0.12, G:0.09, T:0.48
Consensus pattern (144 bp):
AAGTTAAAGGCAAACTAACATGGTACCTTTTTAATATTTTTTAGTTACCTCAACTTTTAAATTTT
TAATATTTTGGGTAAACTACATGTTTAATATCTAAATTATCACTTTTGTTCCATTTACTTTTTAT
TTCATTTTAGTATC
Found at i:40729 original size:277 final size:269
Alignment explanation
Indices: 40190--40752 Score: 902
Period size: 277 Copynumber: 2.1 Consensus size: 269
40180 TCCATTTTAG
*
40190 TACCTCAACTTTTAAATTTTTTTCAAAATCATACATAACATTTACTTTTTATTTCATTTTAGTGT
1 TACCTCAACTTTTAAATTTTTTTCAAAATCACACATAACATTTACTTTTTATTTCATTTTAGTGT
* *
40255 CATTTGTTAAAAAGTTAAAGGCTAACTAACGTGGTACTTTTTTAATATTTTTTAGTTACCTCAAC
66 CATTTGTTAAAAAGTTAAAGGCAAACTAACATGGTACTTTTTTAATATTTTTTAGTTACCTCAAC
*
40320 TTTTAATTTTTTAATATTTTAGGTAAACTACATGTTTAATATCTAAATTATCACTTTTGTTCAAT
131 TTTTAAATTTTTAATATTTTAGGTAAACTACATGTTTAATATCTAAATTATCACTTTTGTTCAAT
*
40385 TTACTTTTTATTTTATTTTAGTGTCATTTGTTAAAAAGTTAAAGGCAAACTAACGTGGTACTTTT
196 TTACTTTTTATTTCATTTTAG-GTCA----TT-AAAAGTTAAAGGCAAACTAACGTGGTACTTTT
40450 TTAATATTTTTTAAT
255 TTAATATTTTTTAAT
* *
40465 TACCTCAATTTTTAATTTTTTTTTTCAAAATCACACATAACATTTACTTTTTATTTCATTTTAGT
1 TACCTCAACTTTTAA--ATTTTTTTCAAAATCACACATAACATTTACTTTTTATTTCATTTTAGT
40530 GTCATTTGTTAAAAAGTTAAAGGCAAACTAACATGGTACTTTTTTAATATTTTTTAGTTACCTCA
64 GTCATTTGTTAAAAAGTTAAAGGCAAACTAACATGGTACTTTTTTAATATTTTTTAGTTACCTCA
* * *
40595 ACTTTTAAATTTTTAATATTTTGGGTAAATTACATGTTTAATATCTAAATTATCACTTTTGTTCC
129 ACTTTTAAATTTTTAATATTTTAGGTAAACTACATGTTTAATATCTAAATTATCACTTTTGTTCA
* *
40660 ATTTACTTTTTATTTCATTTTA-GT-A-T-CAAGTTAAAGGCAAACTAACGTGGTACCTTTTTAA
194 ATTTACTTTTTATTTCATTTTAGGTCATTAAAAGTTAAAGGCAAACTAACGTGGTACTTTTTTAA
*
40721 TATTTTTTAGT
259 TATTTTTTAAT
40732 TACCTCAACTTTT-AATTTTTT
1 TACCTCAACTTTTAAATTTTTT
40753 AATATTTTGG
Statistics
Matches: 271, Mismatches: 15, Indels: 15
0.90 0.05 0.05
Matches are distributed among these distances:
264 6 0.02
266 1 0.00
267 55 0.20
269 1 0.00
274 1 0.00
275 16 0.06
277 191 0.70
ACGTcount: A:0.31, C:0.12, G:0.08, T:0.49
Consensus pattern (269 bp):
TACCTCAACTTTTAAATTTTTTTCAAAATCACACATAACATTTACTTTTTATTTCATTTTAGTGT
CATTTGTTAAAAAGTTAAAGGCAAACTAACATGGTACTTTTTTAATATTTTTTAGTTACCTCAAC
TTTTAAATTTTTAATATTTTAGGTAAACTACATGTTTAATATCTAAATTATCACTTTTGTTCAAT
TTACTTTTTATTTCATTTTAGGTCATTAAAAGTTAAAGGCAAACTAACGTGGTACTTTTTTAATA
TTTTTTAAT
Found at i:42167 original size:5 final size:5
Alignment explanation
Indices: 42157--42209 Score: 74
Period size: 5 Copynumber: 11.0 Consensus size: 5
42147 ACGACGGCAG
* *
42157 CTCAT CTCAT CTCAC CTCAT CTCAC CTCAT CTCA- -TCAT CTCAT CTCAT
1 CTCAT CTCAT CTCAT CTCAT CTCAT CTCAT CTCAT CTCAT CTCAT CTCAT
42205 CTCAT
1 CTCAT
42210 TTGGGCACAA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
3 3 0.07
5 39 0.93
ACGTcount: A:0.21, C:0.43, G:0.00, T:0.36
Consensus pattern (5 bp):
CTCAT
Found at i:43645 original size:4 final size:4
Alignment explanation
Indices: 43636--43667 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
43626 GATGAATAGA
43636 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT
43668 AATGATATCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTAT
Found at i:52683 original size:11 final size:11
Alignment explanation
Indices: 52667--52703 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
52657 CCCGATTTTA
52667 CCGGTTTTCAG
1 CCGGTTTTCAG
*
52678 CCGGTTCT-A-
1 CCGGTTTTCAG
52687 CCGGTTTTCAG
1 CCGGTTTTCAG
52698 CCGGTT
1 CCGGTT
52704 CATTGCCAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
9 7 0.32
10 2 0.09
11 13 0.59
ACGTcount: A:0.08, C:0.30, G:0.27, T:0.35
Consensus pattern (11 bp):
CCGGTTTTCAG
Found at i:52690 original size:20 final size:20
Alignment explanation
Indices: 52665--52704 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
52655 ACCCCGATTT
52665 TACCGGTTTTCAGCCGGTTC
1 TACCGGTTTTCAGCCGGTTC
52685 TACCGGTTTTCAGCCGGTTC
1 TACCGGTTTTCAGCCGGTTC
52705 ATTGCCAGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.10, C:0.30, G:0.25, T:0.35
Consensus pattern (20 bp):
TACCGGTTTTCAGCCGGTTC
Found at i:54113 original size:54 final size:54
Alignment explanation
Indices: 54055--54441 Score: 374
Period size: 54 Copynumber: 7.2 Consensus size: 54
54045 TTAAACTTAT
* * * * * *
54055 AAATTTGCTCCACTCCTCCGTAAAAAAGTAATGCTAGAGCTTGCTCGGTCTTTA
1 AAATTTGCTCTACTCCTTCATAACAAAGGAATGCTAGAGCTTACTCGGTCTTTA
* * * * *
54109 AAATTTACTCTATTCCTTCATAACAAAGGAATGTTAGAGCTTACTAGGT-TTTGG
1 AAATTTGCTCTACTCCTTCATAACAAAGGAATGCTAGAGCTTACTCGGTCTTT-A
* * * **
54163 AAATTTGCTCTACTCCTCCATAACAAAGGAATGCTAGAGCTTACTTGATCTTGG
1 AAATTTGCTCTACTCCTTCATAACAAAGGAATGCTAGAGCTTACTCGGTCTTTA
* * **
54217 AAATTTGCTCTACTCCTTCATAACAAA-GAACGCTAGAACTTACTCGGTCTTGG
1 AAATTTGCTCTACTCCTTCATAACAAAGGAATGCTAGAGCTTACTCGGTCTTTA
* * * *
54270 AAATTTGCTATACTCCTTCATAAAAAAGGAATGCTAGAACTT-CTCAGTC-TTA
1 AAATTTGCTCTACTCCTTCATAACAAAGGAATGCTAGAGCTTACTCGGTCTTTA
* * * * *
54322 GAAATTTGAC-CTACTCCTTCATAGCAAAAGAATGCTAAAGCTTGCTTGGTC-TTA
1 -AAATTTG-CTCTACTCCTTCATAACAAAGGAATGCTAGAGCTTACTCGGTCTTTA
* * * *
54376 TAAATTTTCTCTACTCCTCCATAACAAAGGAACGCTAGAGCTTACTCAGTC-TTA
1 -AAATTTGCTCTACTCCTTCATAACAAAGGAATGCTAGAGCTTACTCGGTCTTTA
*
54430 GAAATTTACTCT
1 -AAATTTGCTCT
54442 TTCAATTTAA
Statistics
Matches: 277, Mismatches: 49, Indels: 14
0.81 0.14 0.04
Matches are distributed among these distances:
52 1 0.00
53 91 0.33
54 183 0.66
55 2 0.01
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (54 bp):
AAATTTGCTCTACTCCTTCATAACAAAGGAATGCTAGAGCTTACTCGGTCTTTA
Found at i:54301 original size:107 final size:107
Alignment explanation
Indices: 54055--54441 Score: 408
Period size: 107 Copynumber: 3.6 Consensus size: 107
54045 TTAAACTTAT
* * * * * * *
54055 AAATTTGCTCCACTCCTCCGTAAAAAAGTAATGCTAGAGCTTGCTCGGTCTTTA-AAATTTACTC
1 AAATTTGCTCTACTCCTCCATAAAAAAGGAATGCTAGAGCTTACTTGATC-TTAGAAATTTGCTC
* * * *
54119 TATTCCTTCATAACAAAGGAATGTTAGAGCTTACTAGGTTTTGG
65 TACTCCTTCATAACAAA-GAATGCTAGAACTTACTAGGTCTTGG
* *
54163 AAATTTGCTCTACTCCTCCATAACAAAGGAATGCTAGAGCTTACTTGATCTTGGAAATTTGCTCT
1 AAATTTGCTCTACTCCTCCATAAAAAAGGAATGCTAGAGCTTACTTGATCTTAGAAATTTGCTCT
* *
54228 ACTCCTTCATAACAAAGAACGCTAGAACTTACTCGGTCTTGG
66 ACTCCTTCATAACAAAGAATGCTAGAACTTACTAGGTCTTGG
* * * *
54270 AAATTTGCTATACTCCTTCATAAAAAAGGAATGCTAGAACTT-C-TCAGTCTTAGAAATTTGAC-
1 AAATTTGCTCTACTCCTCCATAAAAAAGGAATGCTAGAGCTTACTTGA-TCTTAGAAATTTG-CT
* * * **
54332 CTACTCCTTCATAGCAAAAGAATGCTA-AAGCTTGCTTGGTCTTAT
64 CTACTCCTTCATAAC-AAAGAATGCTAGAA-CTTACTAGGTCTTGG
* * * * *
54377 AAATTTTCTCTACTCCTCCATAACAAAGGAACGCTAGAGCTTAC-TCAGTCTTAGAAATTTACTC
1 AAATTTGCTCTACTCCTCCATAAAAAAGGAATGCTAGAGCTTACTTGA-TCTTAGAAATTTGCTC
54441 T
65 T
54442 TTCAATTTAA
Statistics
Matches: 238, Mismatches: 34, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
105 2 0.01
106 29 0.12
107 120 0.50
108 87 0.37
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (107 bp):
AAATTTGCTCTACTCCTCCATAAAAAAGGAATGCTAGAGCTTACTTGATCTTAGAAATTTGCTCT
ACTCCTTCATAACAAAGAATGCTAGAACTTACTAGGTCTTGG
Found at i:54436 original size:214 final size:215
Alignment explanation
Indices: 54055--54441 Score: 521
Period size: 214 Copynumber: 1.8 Consensus size: 215
54045 TTAAACTTAT
* * * * *
54055 AAATTTGCTCCACTCCTCCGTAAAAAAGTAATGCTAGAGCTTGCTCGGTCTTTAAAATTTACTCT
1 AAATTTGCTACACTCCTCCATAAAAAAGGAATGCTAGAACTTGCTCAGTCTTTAAAATTTACTCT
* * * * * *
54120 ATTCCTTCATAACAAAGGAATGTTAGAGCTTACTAGGTTTTGGAAATTTGCTCTACTCCTCCATA
66 ACTCCTTCATAACAAAAGAATGCTAAAGCTTACTAGGTCTTAGAAATTTGCTCTACTCCTCCATA
* * * *
54185 ACAAAGGAATGCTAGAGCTTACTTGATCTTGGAAATTTGCTCTACTCCTTCATAACAAAGAACGC
131 ACAAAGGAACGCTAGAGCTTACTAGATCTTAGAAATTTACTCTACTCCTTCATAACAAAGAACGC
54250 TAGAACTTACTCGGTCTTGG
196 TAGAACTTACTCGGTCTTGG
* *
54270 AAATTTGCTATACTCCTTCATAAAAAAGGAATGCTAGAACTT-CTCAGTC-TTAGAAATTTGAC-
1 AAATTTGCTACACTCCTCCATAAAAAAGGAATGCTAGAACTTGCTCAGTCTTTA-AAATTT-ACT
* * * * *
54332 CTACTCCTTCATAGCAAAAGAATGCTAAAGCTTGCTTGGTCTTATAAATTTTCTCTACTCCTCCA
64 CTACTCCTTCATAACAAAAGAATGCTAAAGCTTACTAGGTCTTAGAAATTTGCTCTACTCCTCCA
54397 TAACAAAGGAACGCTAGAGCTTACTCAG-TCTTAGAAATTTACTCT
129 TAACAAAGGAACGCTAGAGCTTACT-AGATCTTAGAAATTTACTCT
54442 TTCAATTTAA
Statistics
Matches: 147, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
213 3 0.02
214 105 0.71
215 39 0.27
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (215 bp):
AAATTTGCTACACTCCTCCATAAAAAAGGAATGCTAGAACTTGCTCAGTCTTTAAAATTTACTCT
ACTCCTTCATAACAAAAGAATGCTAAAGCTTACTAGGTCTTAGAAATTTGCTCTACTCCTCCATA
ACAAAGGAACGCTAGAGCTTACTAGATCTTAGAAATTTACTCTACTCCTTCATAACAAAGAACGC
TAGAACTTACTCGGTCTTGG
Found at i:55481 original size:40 final size:40
Alignment explanation
Indices: 55383--55481 Score: 92
Period size: 40 Copynumber: 2.4 Consensus size: 40
55373 TGAAACTGGG
* *
55383 CTCAAGTGAGAGAAAAAAAATGATGTTTCAAGGGAAATTGAT
1 CTCAAG-G-GAGAAAAAAAATGATATTTCAAGAGAAATTGAT
* * * * *
55425 ATTAAGTGAGATAAAAAATGATATTTCAAGAGAGATTTG-T
1 CTCAAGGGAGAAAAAAAATGATATTTCAAGAGA-AATTGAT
*
55465 CTCAAGGGAGACAAAAA
1 CTCAAGGGAGAAAAAAA
55482 TCTGTTTCAA
Statistics
Matches: 45, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
40 37 0.82
41 4 0.09
42 4 0.09
ACGTcount: A:0.46, C:0.07, G:0.22, T:0.24
Consensus pattern (40 bp):
CTCAAGGGAGAAAAAAAATGATATTTCAAGAGAAATTGAT
Found at i:55710 original size:40 final size:39
Alignment explanation
Indices: 55627--55973 Score: 185
Period size: 40 Copynumber: 8.9 Consensus size: 39
55617 AAAAATCCAT
* * * * * *
55627 GTCTCAAGAGAGAAAAAATATTTATTTCTACGG-AAATAG
1 GTCTCAAGGGAGAAAAAATCTTTGTTTC-AAGGAAAACAA
*
55666 GTCTCAAGGGAGATAAAAATCTTTATTTCAAGGAAAACAA
1 GTCTCAAGGGAGA-AAAAATCTTTGTTTCAAGGAAAACAA
* * * *
55706 GTCTCAAGAGAGGGAACAATATTTGTTTCAA-GAGAAACATA
1 GTCTCAAGGGA-GAAAAAATCTTTGTTTCAAGGA-AAACA-A
* * * * * *
55747 -TCTCAAAGTAGAAAAAAATATTTGTTTCAGGGGAAACAT
1 GTCTCAAGGGAG-AAAAAATCTTTGTTTCAAGGAAAACAA
* *
55786 GTGTCAAGGGAGACAAAATCTTTGTTTCAATGG-AAACAA
1 GTCTCAAGGGAGAAAAAATCTTTGTTTCAA-GGAAAACAA
* * * *
55825 GTCTCAA--GAGAGACAAT-TTATGTTTTAAGGGAAACAA
1 GTCTCAAGGGAGAAAAAATCTT-TGTTTCAAGGAAAACAA
* * * * *
55862 GTCTTAA-GGAGACAAAATC-TTATTACAACGG-AAACAG
1 GTCTCAAGGGAGAAAAAATCTTTGTTTCAA-GGAAAACAA
* * * *
55899 GTCTGAAGGGAGACAAAATCTTTGTTTTAA-GAGAAACAT
1 GTCTCAAGGGAGAAAAAATCTTTGTTTCAAGGA-AAACAA
* * * * *
55938 GTCTCAAGAGAGACATAATCATTATTTCAAGAGAAA
1 GTCTCAAGGGAGAAAAAATCTTTGTTTCAAG-GAAA
55974 TATTCTTAAG
Statistics
Matches: 241, Mismatches: 47, Indels: 39
0.74 0.14 0.12
Matches are distributed among these distances:
36 4 0.02
37 44 0.18
38 23 0.10
39 79 0.33
40 86 0.36
41 5 0.02
ACGTcount: A:0.42, C:0.12, G:0.20, T:0.26
Consensus pattern (39 bp):
GTCTCAAGGGAGAAAAAATCTTTGTTTCAAGGAAAACAA
Found at i:55838 original size:39 final size:38
Alignment explanation
Indices: 55627--55973 Score: 240
Period size: 39 Copynumber: 8.9 Consensus size: 38
55617 AAAAATCCAT
* * * * * *
55627 GTCTCAAGAGAGAAAAAATATTTATTTCTACGGAAATAG
1 GTCTCAAGAGAGACAAAATCTTTGTTTC-AAGGAAACAA
* * *
55666 GTCTCAAGGGAGATAAAAATCTTTATTTCAAGGAAAACAA
1 GTCTCAAGAGAGA-CAAAATCTTTGTTTCAAGG-AAACAA
** *
55706 GTCTCAAGAGAGGGAACAATATTTGTTTCAAGAGAAACATA
1 GTCTCAAGAGAGACAA-AATCTTTGTTTCAAG-GAAACA-A
* * * *
55747 -TCTCAA-AGTAGAAAAAAATATTTGTTTCAGGGGAAACAT
1 GTCTCAAGAG-AG-ACAAAATCTTTGTTTCA-AGGAAACAA
* *
55786 GTGTCAAGGGAGACAAAATCTTTGTTTCAATGGAAACAA
1 GTCTCAAGAGAGACAAAATCTTTGTTTCAA-GGAAACAA
*
55825 GTCTCAAGAGAGAC--AAT-TTATGTTTTAAGGGAAACAA
1 GTCTCAAGAGAGACAAAATCTT-TGTTTCAA-GGAAACAA
* * * *
55862 GTCTTAAG-GAGACAAAATC-TTATTACAACGGAAACAG
1 GTCTCAAGAGAGACAAAATCTTTGTTTCAA-GGAAACAA
* * * *
55899 GTCTGAAGGGAGACAAAATCTTTGTTTTAAGAGAAACAT
1 GTCTCAAGAGAGACAAAATCTTTGTTTCAAG-GAAACAA
* * *
55938 GTCTCAAGAGAGACATAATCATTATTTCAAGAGAAA
1 GTCTCAAGAGAGACAAAATCTTTGTTTCAAG-GAAA
55974 TATTCTTAAG
Statistics
Matches: 249, Mismatches: 41, Indels: 36
0.76 0.13 0.11
Matches are distributed among these distances:
36 7 0.03
37 44 0.18
38 16 0.06
39 95 0.38
40 81 0.33
41 6 0.02
ACGTcount: A:0.42, C:0.12, G:0.20, T:0.26
Consensus pattern (38 bp):
GTCTCAAGAGAGACAAAATCTTTGTTTCAAGGAAACAA
Found at i:57660 original size:29 final size:31
Alignment explanation
Indices: 57628--57694 Score: 93
Period size: 29 Copynumber: 2.2 Consensus size: 31
57618 GGGTATTGTC
57628 ATTTTAAGCGAAAG-TCAAGGGA-TCTCGTA
1 ATTTTAAGCGAAAGATCAAGGGATTCTCGTA
* *
57657 ATTTTGAGTGAAAGATCAAGGGATTTCTCGTA
1 ATTTTAAGCGAAAGATCAAGGGA-TTCTCGTA
57689 ATTTTA
1 ATTTTA
57695 GGTGAATGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 12 0.38
30 8 0.25
32 12 0.38
ACGTcount: A:0.33, C:0.10, G:0.22, T:0.34
Consensus pattern (31 bp):
ATTTTAAGCGAAAGATCAAGGGATTCTCGTA
Found at i:57690 original size:32 final size:29
Alignment explanation
Indices: 57628--57741 Score: 99
Period size: 30 Copynumber: 3.8 Consensus size: 29
57618 GGGTATTGTC
*
57628 ATTTTAAGCGAAAG-TCAAGGGATCTCGTA
1 ATTTT-AGTGAAAGATCAAGGGATCTCGTA
57657 ATTTTGAGTGAAAGATCAAGGGATTTCTCGTA
1 ATTTT-AGTGAAAGATCAAGGGA--TCTCGTA
* * * *
57689 ATTTTAGGTGAATGATCATGAGATCAT-ATA
1 ATTTTA-GTGAAAGATCAAGGGATC-TCGTA
57719 ATTTTAGTTGAAAGATC-AGGGAT
1 ATTTTAG-TGAAAGATCAAGGGAT
57742 TTCATTTTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
29 17 0.24
30 26 0.37
31 2 0.03
32 25 0.36
ACGTcount: A:0.34, C:0.09, G:0.24, T:0.33
Consensus pattern (29 bp):
ATTTTAGTGAAAGATCAAGGGATCTCGTA
Found at i:59885 original size:30 final size:30
Alignment explanation
Indices: 59850--59946 Score: 76
Period size: 30 Copynumber: 3.2 Consensus size: 30
59840 GCCAAAGTTG
59850 ATCAATTTCCAAATTAGGAACAATATTAGA
1 ATCAATTTCCAAATTAGGAACAATATTAGA
**** *
59880 ATCAATCAAGAAATT--GAACTCAA-ATTTATTA
1 ATCAATTTCCAAATTAGGAA--CAATA-TTA-GA
59911 A-CTAATTTCCAAATTAGGAACAATATTAGA
1 ATC-AATTTCCAAATTAGGAACAATATTAGA
59941 ATCAAT
1 ATCAAT
59947 CAAGAAATTG
Statistics
Matches: 48, Mismatches: 10, Indels: 18
0.63 0.13 0.24
Matches are distributed among these distances:
28 3 0.06
29 1 0.02
30 23 0.48
31 17 0.35
32 1 0.02
33 3 0.06
ACGTcount: A:0.47, C:0.13, G:0.08, T:0.31
Consensus pattern (30 bp):
ATCAATTTCCAAATTAGGAACAATATTAGA
Found at i:61804 original size:25 final size:26
Alignment explanation
Indices: 61776--61835 Score: 104
Period size: 25 Copynumber: 2.3 Consensus size: 26
61766 TTTGAACTTT
61776 GGCCGAAGAGATTGTTG-ACCGAGTA
1 GGCCGAAGAGATTGTTGAACCGAGTA
*
61801 GGCCGAAGAGATTGTTGAACGGAGTA
1 GGCCGAAGAGATTGTTGAACCGAGTA
61827 GGCCGAAGA
1 GGCCGAAGA
61836 TCATCGATCC
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 17 0.52
26 16 0.48
ACGTcount: A:0.30, C:0.15, G:0.38, T:0.17
Consensus pattern (26 bp):
GGCCGAAGAGATTGTTGAACCGAGTA
Found at i:61966 original size:26 final size:26
Alignment explanation
Indices: 61937--61997 Score: 113
Period size: 26 Copynumber: 2.3 Consensus size: 26
61927 GTTTGAACTT
*
61937 GGCCGAAGAGATTGTTGACCGGAGTA
1 GGCCGAAGAGATTGTTGAACGGAGTA
61963 GGCCGAAGAGATTGTTGAACGGAGTA
1 GGCCGAAGAGATTGTTGAACGGAGTA
61989 GGCCGAAGA
1 GGCCGAAGA
61998 TCATCGATCC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.30, C:0.15, G:0.39, T:0.16
Consensus pattern (26 bp):
GGCCGAAGAGATTGTTGAACGGAGTA
Found at i:72246 original size:250 final size:253
Alignment explanation
Indices: 71779--72360 Score: 868
Period size: 251 Copynumber: 2.3 Consensus size: 253
71769 CTTATTCATA
71779 TATTGAATAAAAATATTTTTTTATTA-TTCGGGTCGGTCGGG-TTCTAATTC--ATA----GTCG
1 TATTGAATAAAAATA-TTTTTTATTATTTCGGGTCGGTCGGGTTTCTAATTCATATATCGGGTCG
* * * *
71836 GGTCGGGTGAAACTTTATTTTGGTCGGGTTGGGTCAGTGTTTTTAAGTGTGATATTCGGGTCGGG
65 GGTCGGGTGAAACTTTATTTTGATCAGGTTCGGT-A-TGTTTTTAAGTGTGATATTCGGGTCAGG
* * * * * * *
71901 TTGAGTTCGGGTTTTGGGTGAAAAATACCCGACCCGACCCGAAATATATATATTTTACTTTATAT
128 TCGAGTTCGGATTTAGGGTGAAAAATACCCAACCCGACCCAAAAAATATATATTTTACGTTATAT
*
71966 ATTTAGGAATAATTACAATAATACCCCTCTATATAATTTTTTTCAA-TAAGTCACTG-TTT
193 ATTTAGGAATAATTACAATAATACCCCTCTATATAATATTTTTCAATTAAGTCACTGTTTT
*
72025 TATTGAATAAAAATATTTTTTATTATTTCGGGTCAGTCGGGTTTCTAATTCATATATTCGGGTCG
1 TATTGAATAAAAATATTTTTTATTATTTCGGGTCGGTCGGGTTTCTAATTCATATA-TCGGGTCG
*
72090 GGTCGGGTGAAACTTTATTTTGATCAGG-TCGGT-TTTTTTTAAGTGTGATATTCGGGTCAGGTC
65 GGTCGGGTGAAACTTTATTTTGATCAGGTTCGGTATGTTTTTAAGTGTGATATTCGGGTCAGGTC
*
72153 GGGTTCGGATTTAGGGTGAAAAATACCCAACCCGACCCAAAAAATATATAATTTTACGTTATATA
130 GAGTTCGGATTTAGGGTGAAAAATACCCAACCCGACCCAAAAAATATAT-ATTTTACGTTATATA
72218 TTTAGGAATAATTACAATAATA-CCCTCTATATAATATTTTTCAATTAAGTCACTGTTTT
194 TTTAGGAATAATTACAATAATACCCCTCTATATAATATTTTTCAATTAAGTCACTGTTTT
*
72277 TATT-AATAAAAATATTTTTTATTATTTCGGGTTGGGTCGGGTTTCTAATTCATATATCGGGTCG
1 TATTGAATAAAAATATTTTTTATTATTTCGGG-TCGGTCGGGTTTCTAATTCATATATCGGGTCG
72341 GGTCGGGTGAAACTTTATTT
65 GGTCGGGTGAAACTTTATTT
72361 GGTCGGATCG
Statistics
Matches: 306, Mismatches: 17, Indels: 21
0.89 0.05 0.06
Matches are distributed among these distances:
245 10 0.03
246 29 0.09
247 9 0.03
249 3 0.01
250 91 0.30
251 101 0.33
252 29 0.09
253 4 0.01
254 30 0.10
ACGTcount: A:0.27, C:0.13, G:0.20, T:0.40
Consensus pattern (253 bp):
TATTGAATAAAAATATTTTTTATTATTTCGGGTCGGTCGGGTTTCTAATTCATATATCGGGTCGG
GTCGGGTGAAACTTTATTTTGATCAGGTTCGGTATGTTTTTAAGTGTGATATTCGGGTCAGGTCG
AGTTCGGATTTAGGGTGAAAAATACCCAACCCGACCCAAAAAATATATATTTTACGTTATATATT
TAGGAATAATTACAATAATACCCCTCTATATAATATTTTTCAATTAAGTCACTGTTTT
Found at i:72424 original size:44 final size:44
Alignment explanation
Indices: 72368--72453 Score: 147
Period size: 44 Copynumber: 2.0 Consensus size: 44
72358 TTTGGTCGGA
*
72368 TCGGGTCTCGGATGGAGGTTCCCTTTTTC-CTGGGTCGGGTCGAG
1 TCGGGTCTCGGATGGAGGTTCCCTTGTTCTC-GGGTCGGGTCGAG
72412 TCGGGTCTCGGATGGAGGTTCCCTTGTTCTCGGGTCGGGTCG
1 TCGGGTCTCGGATGGAGGTTCCCTTGTTCTCGGGTCGGGTCG
72454 GGTGAACCAC
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
44 39 0.98
45 1 0.03
ACGTcount: A:0.06, C:0.23, G:0.40, T:0.31
Consensus pattern (44 bp):
TCGGGTCTCGGATGGAGGTTCCCTTGTTCTCGGGTCGGGTCGAG
Found at i:72456 original size:39 final size:41
Alignment explanation
Indices: 72361--72456 Score: 124
Period size: 44 Copynumber: 2.3 Consensus size: 41
72351 AACTTTATTT
* *
72361 GGTCGGATCGGGTCTCGGATGGAGGTTCCCTTTTTCCTGGGTCG
1 GGTCGGGTCGGGTCTCGGATGGAGGTTCCCTTGTTCC---GTCG
*
72405 GGTCGAGTCGGGTCTCGGATGGAGGTTCCCTTGTT-C-TCG
1 GGTCGGGTCGGGTCTCGGATGGAGGTTCCCTTGTTCCGTCG
72444 GGTCGGGTCGGGT
1 GGTCGGGTCGGGT
72457 GAACCACTAA
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
39 15 0.31
43 1 0.02
44 32 0.67
ACGTcount: A:0.06, C:0.22, G:0.42, T:0.30
Consensus pattern (41 bp):
GGTCGGGTCGGGTCTCGGATGGAGGTTCCCTTGTTCCGTCG
Found at i:74400 original size:87 final size:87
Alignment explanation
Indices: 74254--74412 Score: 268
Period size: 87 Copynumber: 1.8 Consensus size: 87
74244 TTAATTTAAT
*
74254 TAATTAATTAATATAGATTTAATTAATTTGAAATAATAAAATCCCCATATGATTAGGGTAACTTG
1 TAATTAATTAATATAGATTTAATTAATTTGAAATAATAAAATCCCAATATGATTAGGGTAACTTG
74319 GATATAAGAGGATTATAAATTC
66 GATATAAGAGGATTATAAATTC
74341 TAATTAATTAAATATAGATTTAA-TAATTTGAAATAATAAAA-CCCTAATATGATTAGGGTAACT
1 TAATTAATT-AATATAGATTTAATTAATTTGAAATAATAAAATCCC-AATATGATTAGGGTAACT
*
74404 TGGCTATAA
64 TGGATATAA
74413 AAGAGTGTGT
Statistics
Matches: 68, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
86 3 0.04
87 52 0.76
88 13 0.19
ACGTcount: A:0.45, C:0.07, G:0.12, T:0.36
Consensus pattern (87 bp):
TAATTAATTAATATAGATTTAATTAATTTGAAATAATAAAATCCCAATATGATTAGGGTAACTTG
GATATAAGAGGATTATAAATTC
Found at i:74775 original size:16 final size:16
Alignment explanation
Indices: 74754--74786 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
74744 GGCATTCCTT
74754 CACGGTTTTACCGGTC
1 CACGGTTTTACCGGTC
74770 CACGGTTTTACCGGTC
1 CACGGTTTTACCGGTC
74786 C
1 C
74787 GTCAGGACCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.33, G:0.24, T:0.30
Consensus pattern (16 bp):
CACGGTTTTACCGGTC
Found at i:89167 original size:6 final size:6
Alignment explanation
Indices: 89156--89186 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
89146 GACACGTATT
*
89156 ACCACG ACCACG ACCTCG ACCACG ACCACG A
1 ACCACG ACCACG ACCACG ACCACG ACCACG A
89187 GCCGAGCCGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.32, C:0.48, G:0.16, T:0.03
Consensus pattern (6 bp):
ACCACG
Found at i:108233 original size:3 final size:3
Alignment explanation
Indices: 108225--108271 Score: 67
Period size: 3 Copynumber: 15.0 Consensus size: 3
108215 TTGTAATAGT
*
108225 TAA TAA TAA TAA TAAA TAA TAA TAA TAA TAA TGA TAAA TAA TAA TAA
1 TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA
108272 AAACAAACTG
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
3 35 0.88
4 5 0.12
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:108244 original size:16 final size:16
Alignment explanation
Indices: 108225--108272 Score: 71
Period size: 16 Copynumber: 3.0 Consensus size: 16
108215 TTGTAATAGT
108225 TAATAATAATAATAAA
1 TAATAATAATAATAAA
108241 TAATAATAATAAT-AA
1 TAATAATAATAATAAA
*
108256 TGATAAATAATAATAAA
1 TAAT-AATAATAATAAA
108273 AACAAACTGA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
15 5 0.17
16 22 0.76
17 2 0.07
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (16 bp):
TAATAATAATAATAAA
Found at i:108253 original size:22 final size:22
Alignment explanation
Indices: 108225--108271 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
108215 TTGTAATAGT
108225 TAATAATAATAATAAATAATAA
1 TAATAATAATAATAAATAATAA
*
108247 TAATAATAATGATAAATAATAA
1 TAATAATAATAATAAATAATAA
108269 TAA
1 TAA
108272 AAACAAACTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (22 bp):
TAATAATAATAATAAATAATAA
Found at i:110948 original size:24 final size:24
Alignment explanation
Indices: 110920--110980 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
110910 TAAATGAATG
110920 CGTTCATGAACATATAAA-AGAACA
1 CGTTCATGAACATATAAACAG-ACA
* *
110944 TGTTCGTGAACATATAAACAGACA
1 CGTTCATGAACATATAAACAGACA
*
110968 CGTTCACGAACAT
1 CGTTCATGAACAT
110981 TAAGCAAACA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
24 29 0.94
25 2 0.06
ACGTcount: A:0.43, C:0.20, G:0.15, T:0.23
Consensus pattern (24 bp):
CGTTCATGAACATATAAACAGACA
Found at i:123665 original size:2 final size:2
Alignment explanation
Indices: 123658--123683 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
123648 ATCACAATCA
123658 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
123684 TCGTGAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:124804 original size:2 final size:2
Alignment explanation
Indices: 124797--124832 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
124787 GGATAACTGA
124797 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
124833 CGGAACAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:128085 original size:7 final size:7
Alignment explanation
Indices: 128073--128131 Score: 57
Period size: 7 Copynumber: 8.1 Consensus size: 7
128063 TCAACAATCT
128073 TAAAATA
1 TAAAATA
128080 TAAAATA
1 TAAAATA
128087 TTAAAATA
1 -TAAAATA
128095 TAAAATA
1 TAAAATA
*
128102 TAACATCA
1 TAAAAT-A
* *
128110 -ACAATCT
1 TAAAAT-A
128117 TAAAATA
1 TAAAATA
128124 TAAAATA
1 TAAAATA
128131 T
1 T
128132 CACTCTTGTA
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
7 31 0.72
8 12 0.28
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.31
Consensus pattern (7 bp):
TAAAATA
Found at i:128120 original size:22 final size:22
Alignment explanation
Indices: 128058--128126 Score: 79
Period size: 22 Copynumber: 3.1 Consensus size: 22
128048 GGGAGATTGT
128058 TAACATCAACAATCTTAAAATA
1 TAACATCAACAATCTTAAAATA
* * *
128080 TAAAAT-ATTAAAAT-ATAAAATA
1 TAACATCA--ACAATCTTAAAATA
128102 TAACATCAACAATCTTAAAATA
1 TAACATCAACAATCTTAAAATA
128124 TAA
1 TAA
128127 AATATCACTC
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
21 5 0.14
22 27 0.73
23 5 0.14
ACGTcount: A:0.59, C:0.12, G:0.00, T:0.29
Consensus pattern (22 bp):
TAACATCAACAATCTTAAAATA
Found at i:135678 original size:19 final size:19
Alignment explanation
Indices: 135651--135688 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
135641 ATATACTCGG
135651 AGGGAACCGATTCCCCCCA
1 AGGGAACCGATTCCCCCCA
*
135670 AGGGTACCGATTCCCCCCA
1 AGGGAACCGATTCCCCCCA
135689 CTGTTCAACG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.24, C:0.42, G:0.21, T:0.13
Consensus pattern (19 bp):
AGGGAACCGATTCCCCCCA
Found at i:141137 original size:22 final size:22
Alignment explanation
Indices: 141111--141191 Score: 78
Period size: 23 Copynumber: 3.7 Consensus size: 22
141101 ATAGGGCAGA
141111 GGGAATCGATACCCCCTTGAAG
1 GGGAATCGATACCCCCTTGAAG
* *
141133 GGGAACCGATTCCCCCTTTGAAG
1 GGGAATCGATACCCCC-TTGAAG
* *
141156 GGGAA-CTGATTCCCCCAT--AG
1 GGGAATC-GATACCCCCTTGAAG
*
141176 GGGAATGGATACCCCC
1 GGGAATCGATACCCCC
141192 CCTGGAGTTC
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
20 15 0.29
22 16 0.31
23 20 0.39
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.19
Consensus pattern (22 bp):
GGGAATCGATACCCCCTTGAAG
Found at i:141153 original size:23 final size:22
Alignment explanation
Indices: 141111--141171 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 22
141101 ATAGGGCAGA
* *
141111 GGGAATCGATACCCCCTTGAAG
1 GGGAACCGATTCCCCCTTGAAG
141133 GGGAACCGATTCCCCCTTTGAAG
1 GGGAACCGATTCCCCC-TTGAAG
*
141156 GGGAACTGATTCCCCC
1 GGGAACCGATTCCCCC
141172 ATAGGGGAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
22 14 0.40
23 21 0.60
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (22 bp):
GGGAACCGATTCCCCCTTGAAG
Found at i:141190 original size:20 final size:20
Alignment explanation
Indices: 141154--141191 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
141144 CCCCCTTTGA
*
141154 AGGGGAACTGATTCCCCCAT
1 AGGGGAACTGATACCCCCAT
141174 AGGGGAA-TGGATACCCCC
1 AGGGGAACT-GATACCCCC
141192 CCTGGAGTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 1 0.06
20 15 0.94
ACGTcount: A:0.26, C:0.29, G:0.29, T:0.16
Consensus pattern (20 bp):
AGGGGAACTGATACCCCCAT
Found at i:143447 original size:30 final size:30
Alignment explanation
Indices: 143411--143471 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
143401 GTATTTTTTG
143411 AAGAGGAGTAGTGTTAAAGTAAGGGGGAGT
1 AAGAGGAGTAGTGTTAAAGTAAGGGGGAGT
143441 AAGAGGAGTAGTGTTAAAGTAAGGGGGAGT
1 AAGAGGAGTAGTGTTAAAGTAAGGGGGAGT
143471 A
1 A
143472 GTATTTTTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.38, C:0.00, G:0.43, T:0.20
Consensus pattern (30 bp):
AAGAGGAGTAGTGTTAAAGTAAGGGGGAGT
Found at i:145077 original size:54 final size:54
Alignment explanation
Indices: 145011--145292 Score: 239
Period size: 54 Copynumber: 5.3 Consensus size: 54
145001 GGTCTTTGGG
* * * **
145011 TGCACACGTAGTGCCAATACGGTAGTTCATAAACATATTATGAATTTCGTGGGT
1 TGCACACATAGTGCCAATACGGAAATTCATAAACATATTATGAATTTCGTAAGT
** * * *** * **
145065 TGCACATTTAGTGTCGATACGGTCGTTCATAAACATATTATGAA-TTAGTGGGT
1 TGCACACATAGTGCCAATACGGAAATTCATAAACATATTATGAATTTCGTAAGT
* * ** * * *
145118 TG--CACTTAGTGCAAATACAAAAATTCATAAACTTATTATAAATTTCTTAAGT
1 TGCACACATAGTGCCAATACGGAAATTCATAAACATATTATGAATTTCGTAAGT
* * * * * *
145170 TTCACACACAATGCCAATACGAAAATTCATAAACTTATTATGAATTTCTTAAGT
1 TGCACACATAGTGCCAATACGGAAATTCATAAACATATTATGAATTTCGTAAGT
* **
145224 TGCACACACAGTGCCAATACGGAAATTCATAAAC-TCATTATGAATTTTTTAAGT
1 TGCACACATAGTGCCAATACGGAAATTCATAAACAT-ATTATGAATTTCGTAAGT
*
145278 TGCAAACATAGTGCC
1 TGCACACATAGTGCC
145293 CATTAGGTAA
Statistics
Matches: 190, Mismatches: 34, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
51 29 0.15
52 6 0.03
53 11 0.06
54 144 0.76
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (54 bp):
TGCACACATAGTGCCAATACGGAAATTCATAAACATATTATGAATTTCGTAAGT
Found at i:145149 original size:51 final size:52
Alignment explanation
Indices: 145036--145161 Score: 130
Period size: 51 Copynumber: 2.4 Consensus size: 52
145026 AATACGGTAG
* * *****
145036 TTCATAAACATATTATGAATTTCGTGGGTTGCACATTTAGTGTCGATACGGTCG
1 TTCATAAACATATTATGAA-TTAGTGGGTTGCACA-TTAGTGTCAATACAAAAA
145090 TTCATAAACATATTATGAATTAGTGGGTTGCAC-TTAGTG-CAAATACAAAAA
1 TTCATAAACATATTATGAATTAGTGGGTTGCACATTAGTGTC-AATACAAAAA
* *
145141 TTCATAAACTTATTATAAATT
1 TTCATAAACATATTATGAATT
145162 TCTTAAGTTT
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
50 1 0.02
51 29 0.47
53 13 0.21
54 19 0.31
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (52 bp):
TTCATAAACATATTATGAATTAGTGGGTTGCACATTAGTGTCAATACAAAAA
Found at i:150965 original size:54 final size:55
Alignment explanation
Indices: 150901--151135 Score: 189
Period size: 54 Copynumber: 4.4 Consensus size: 55
150891 ATAAGTCCTT
* * *
150901 TGGGGTGCACACGTAGTGCCAATACAGTCATTCGTAAACATATTATGAATTTC-C
1 TGGGTTGCACACTTAGTGCCAATACAGTCATTCATAAACATATTATGAATTTCTC
* * *
150955 TGGGTTGCACACTTAGTG-TAGATAC-GATCACTCATAAACATATTATGAA-TTCTG
1 TGGGTTGCACACTTAGTGCCA-ATACAG-TCATTCATAAACATATTATGAATTTCTC
* ** * *
151009 TGGGTTACACACTTAGTGCCAATACAGAAATTCATAAACTTATTATAAATTTCT-
1 TGGGTTGCACACTTAGTGCCAATACAGTCATTCATAAACATATTATGAATTTCTC
** ** * ** *
151063 TAAGTTGCACACACA-TGCCAATACGGAAATTCATAAAC-TCATTACGAATTTCT-
1 TGGGTTGCACACTTAGTGCCAATACAGTCATTCATAAACAT-ATTATGAATTTCTC
** *
151116 TAAGTTGCACACATAGTGCC
1 TGGGTTGCACACTTAGTGCC
151136 CATTCGGTAA
Statistics
Matches: 151, Mismatches: 22, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
52 1 0.01
53 52 0.34
54 92 0.61
55 6 0.04
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.31
Consensus pattern (55 bp):
TGGGTTGCACACTTAGTGCCAATACAGTCATTCATAAACATATTATGAATTTCTC
Found at i:151097 original size:53 final size:53
Alignment explanation
Indices: 151025--151128 Score: 172
Period size: 53 Copynumber: 2.0 Consensus size: 53
151015 ACACACTTAG
* *
151025 TGCCAATACAGAAATTCATAAACTTATTATAAATTTCTTAAGTTGCACACACA
1 TGCCAATACAGAAATTCATAAACTCATTACAAATTTCTTAAGTTGCACACACA
* *
151078 TGCCAATACGGAAATTCATAAACTCATTACGAATTTCTTAAGTTGCACACA
1 TGCCAATACAGAAATTCATAAACTCATTACAAATTTCTTAAGTTGCACACA
151129 TAGTGCCCAT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 47 1.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (53 bp):
TGCCAATACAGAAATTCATAAACTCATTACAAATTTCTTAAGTTGCACACACA
Found at i:154132 original size:15 final size:15
Alignment explanation
Indices: 154114--154147 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
154104 CTTTTCCATT
154114 TCTTTCTTTTCTTCA
1 TCTTTCTTTTCTTCA
*
154129 TCTTTCTTTTCTTGA
1 TCTTTCTTTTCTTCA
154144 TCTT
1 TCTT
154148 CTTCTTTCAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.06, C:0.24, G:0.03, T:0.68
Consensus pattern (15 bp):
TCTTTCTTTTCTTCA
Found at i:157540 original size:110 final size:109
Alignment explanation
Indices: 157404--157613 Score: 350
Period size: 110 Copynumber: 1.9 Consensus size: 109
157394 TTTACCTATC
*
157404 TCTCTGACTTTTCTCACTGAAAAAATATTTTTAAATTATAATATCTTTT-TATGAGTTATTTCCA
1 TCTCTGACTTTTCTCACTGAAAAAATATTTTTAAATTATAATATCTTTTATATAAGTTATTTCCA
* *
157468 AGTAAAAAAAAGGTGAAAACTTCATTTTTTTTTATTGTAAGCCTA
66 AGTAAAAAAAA-GTGAAAACTTCATTTATTATTATTGTAAGCCTA
**
157513 TCTCTGACTTTTCCTCACTGAGTAAATATTTTTAAATTATAATATCTTTTATATAAGTTATTTCC
1 TCTCTGACTTTT-CTCACTGAAAAAATATTTTTAAATTATAATATCTTTTATATAAGTTATTTCC
157578 AAGTAAAAAAAAGTGAAAACTTCATTTATTATTATT
65 AAGTAAAAAAAAGTGAAAACTTCATTTATTATTATT
157614 ATTATTATTG
Statistics
Matches: 94, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
109 12 0.13
110 57 0.61
111 25 0.27
ACGTcount: A:0.36, C:0.12, G:0.08, T:0.44
Consensus pattern (109 bp):
TCTCTGACTTTTCTCACTGAAAAAATATTTTTAAATTATAATATCTTTTATATAAGTTATTTCCA
AGTAAAAAAAAGTGAAAACTTCATTTATTATTATTGTAAGCCTA
Found at i:160377 original size:12 final size:12
Alignment explanation
Indices: 160360--160385 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
160350 TACTTGGAAT
160360 TTATGATTTTTA
1 TTATGATTTTTA
160372 TTATGATTTTTA
1 TTATGATTTTTA
160384 TT
1 TT
160386 TACTTTTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (12 bp):
TTATGATTTTTA
Found at i:160412 original size:18 final size:20
Alignment explanation
Indices: 160372--160413 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
160362 ATGATTTTTA
*
160372 TTATGATTTTTATTTACTTT
1 TTATGATTTCTATTTACTTT
160392 TTATGATTTCT-TTTA-TTT
1 TTATGATTTCTATTTACTTT
160410 TTAT
1 TTAT
160414 TTCATTAGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.33
19 4 0.19
20 10 0.48
ACGTcount: A:0.19, C:0.05, G:0.05, T:0.71
Consensus pattern (20 bp):
TTATGATTTCTATTTACTTT
Found at i:168085 original size:40 final size:40
Alignment explanation
Indices: 168041--168135 Score: 102
Period size: 40 Copynumber: 2.4 Consensus size: 40
168031 GTTTTGAAAT
* ** *
168041 TCGCAACTCGAATTTCT-TTTCTGCAACGCGAATATGTAAA
1 TCGCAACCCGAATTTCTAAATC-GCAACGCAAATATGTAAA
* * * *
168081 TCGCAACGCGAATATGTAAATCGCAACGCAAATATGTAAT
1 TCGCAACCCGAATTTCTAAATCGCAACGCAAATATGTAAA
168121 TCGCAACCCGAATTT
1 TCGCAACCCGAATTT
168136 GTAATTCGTA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
40 43 0.96
41 2 0.04
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (40 bp):
TCGCAACCCGAATTTCTAAATCGCAACGCAAATATGTAAA
Found at i:168086 original size:20 final size:20
Alignment explanation
Indices: 168063--168139 Score: 118
Period size: 20 Copynumber: 3.9 Consensus size: 20
168053 TTTCTTTTCT
168063 GCAACGCGAATATGTAAATC
1 GCAACGCGAATATGTAAATC
168083 GCAACGCGAATATGTAAATC
1 GCAACGCGAATATGTAAATC
* *
168103 GCAACGCAAATATGTAATTC
1 GCAACGCGAATATGTAAATC
* *
168123 GCAACCCGAATTTGTAA
1 GCAACGCGAATATGTAA
168140 TTCGTAAACA
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 52 1.00
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.22
Consensus pattern (20 bp):
GCAACGCGAATATGTAAATC
Found at i:168720 original size:20 final size:20
Alignment explanation
Indices: 168697--168735 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
168687 TTTGAAACTT
168697 AAATTCGCAACACGAAAATG
1 AAATTCGCAACACGAAAATG
*
168717 AAATTTGCAACACGAAAAT
1 AAATTCGCAACACGAAAAT
168736 CGCAACGCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.51, C:0.18, G:0.13, T:0.18
Consensus pattern (20 bp):
AAATTCGCAACACGAAAATG
Found at i:170293 original size:42 final size:42
Alignment explanation
Indices: 170234--170331 Score: 142
Period size: 42 Copynumber: 2.3 Consensus size: 42
170224 CCCCCACTTT
* * * *
170234 GAGAGCCATTACCTGATCGAGCCGATTCTACAGCTCGACACC
1 GAGAGCCATCACCTGATCGAGCCGATTATACACCTCCACACC
* *
170276 GAGAGCCATCACCTGATCGAGCTGATTATACACCTCCAGACC
1 GAGAGCCATCACCTGATCGAGCCGATTATACACCTCCACACC
170318 GAGAGCCATCACCT
1 GAGAGCCATCACCT
170332 ATTACATCAC
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.28, C:0.34, G:0.20, T:0.18
Consensus pattern (42 bp):
GAGAGCCATCACCTGATCGAGCCGATTATACACCTCCACACC
Found at i:170487 original size:21 final size:21
Alignment explanation
Indices: 170448--170487 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
170438 GGGGAGTTAC
* *
170448 GTGATGAGGTCAGTGCTTTGA
1 GTGATGAAGTCAGTACTTTGA
*
170469 GTGATGAAGTCGGTACTTT
1 GTGATGAAGTCAGTACTTT
170488 ACATGACAAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.20, C:0.10, G:0.35, T:0.35
Consensus pattern (21 bp):
GTGATGAAGTCAGTACTTTGA
Found at i:170592 original size:21 final size:21
Alignment explanation
Indices: 170568--170626 Score: 100
Period size: 21 Copynumber: 2.8 Consensus size: 21
170558 GGTAATGATG
170568 CTTTACGTGGTAAGGTATCTA
1 CTTTACGTGGTAAGGTATCTA
*
170589 CTTTACGTGGTGAGGTATCTA
1 CTTTACGTGGTAAGGTATCTA
*
170610 CTTTACGTGATAAGGTA
1 CTTTACGTGGTAAGGTA
170627 GCCGCTCTAC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.24, C:0.14, G:0.25, T:0.37
Consensus pattern (21 bp):
CTTTACGTGGTAAGGTATCTA
Found at i:171012 original size:21 final size:21
Alignment explanation
Indices: 170920--171016 Score: 95
Period size: 21 Copynumber: 4.6 Consensus size: 21
170910 GATTCACCTT
*
170920 CATCGTTCAAGAGGCCTCTCC
1 CATCGTTCAAGAGGCCCCTCC
* * * * *
170941 TATTGTTGAAGAGGTCTCTCC
1 CATCGTTCAAGAGGCCCCTCC
* * *
170962 TATCGTTGAAGAGGCCCCTCT
1 CATCGTTCAAGAGGCCCCTCC
*
170983 CATCATTCAAGAGGCCCCTCC
1 CATCGTTCAAGAGGCCCCTCC
*
171004 CACCGTTCAAGAG
1 CATCGTTCAAGAG
171017 CCCGATTCAC
Statistics
Matches: 62, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 62 1.00
ACGTcount: A:0.22, C:0.32, G:0.21, T:0.26
Consensus pattern (21 bp):
CATCGTTCAAGAGGCCCCTCC
Found at i:174811 original size:12 final size:12
Alignment explanation
Indices: 174794--174818 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
174784 TCTTCGGGGA
174794 CTTTTTCTTCTT
1 CTTTTTCTTCTT
174806 CTTTTTCTTCTT
1 CTTTTTCTTCTT
174818 C
1 C
174819 AGGGTTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:175020 original size:24 final size:24
Alignment explanation
Indices: 174993--175060 Score: 84
Period size: 24 Copynumber: 2.8 Consensus size: 24
174983 TTGAAACATC
*
174993 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATTCGAGTATTGACCAAG
*
175017 ATCAAAGTTC-AGGTATTGACCAAG
1 ATCAAAATTCGA-GTATTGACCAAG
* *
175041 ATCAAATTTCGAATATTGAC
1 ATCAAAATTCGAGTATTGAC
175061 TAGTACTCAC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
23 1 0.03
24 36 0.95
25 1 0.03
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.26
Consensus pattern (24 bp):
ATCAAAATTCGAGTATTGACCAAG
Found at i:176000 original size:20 final size:21
Alignment explanation
Indices: 175975--176123 Score: 102
Period size: 20 Copynumber: 7.4 Consensus size: 21
175965 AAATAAAAGC
175975 TGTTGCGAAATTA-AAATTCG
1 TGTTGCGAAATTAGAAATTCG
* * *
175995 TGTTGC-AATTTAGAAAATCT
1 TGTTGCGAAATTAGAAATTCG
176015 TGTTGCGAAA--AGAAAACTT-G
1 TGTTGCGAAATTAG-AAA-TTCG
*
176035 TGTTGCGAAA-AAGAAATTCG
1 TGTTGCGAAATTAGAAATTCG
*
176055 CGTTGCG-AATTCAGAAA-TCG
1 TGTTGCGAAATT-AGAAATTCG
* *
176075 AGTTGCGAAGTT-GAAATTCCG
1 TGTTGCGAAATTAGAAATT-CG
* *
176096 TGTTGCGAATTTGGAAA-TCG
1 TGTTGCGAAATTAGAAATTCG
*
176116 CGTTGCGA
1 TGTTGCGA
176124 TTGCAAGAAA
Statistics
Matches: 104, Mismatches: 13, Indels: 24
0.74 0.09 0.17
Matches are distributed among these distances:
19 15 0.14
20 59 0.57
21 26 0.25
22 4 0.04
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (21 bp):
TGTTGCGAAATTAGAAATTCG
Found at i:176113 original size:41 final size:40
Alignment explanation
Indices: 176047--176123 Score: 109
Period size: 41 Copynumber: 1.9 Consensus size: 40
176037 TTGCGAAAAA
176047 GAAATTCGCGTTGCGAATTCAGAAATCGAGTTGCGAAGTT
1 GAAATTCGCGTTGCGAATTCAGAAATCGAGTTGCGAAGTT
* ** *
176087 GAAATTCCGTGTTGCGAATTTGGAAATCGCGTTGCGA
1 GAAATT-CGCGTTGCGAATTCAGAAATCGAGTTGCGA
176124 TTGCAAGAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
40 6 0.19
41 26 0.81
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (40 bp):
GAAATTCGCGTTGCGAATTCAGAAATCGAGTTGCGAAGTT
Found at i:185450 original size:13 final size:13
Alignment explanation
Indices: 185432--185456 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
185422 GCCATTAGTC
185432 CATAAACAATATT
1 CATAAACAATATT
185445 CATAAACAATAT
1 CATAAACAATAT
185457 GTAATGGTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (13 bp):
CATAAACAATATT
Found at i:187103 original size:19 final size:18
Alignment explanation
Indices: 187081--187127 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 18
187071 CATATAGTTT
187081 TCAAAACAACATAATTAAA
1 TCAAAACAACA-AATTAAA
*
187100 TCAAAAACAACAATTTAAA
1 TC-AAAACAACAAATTAAA
*
187119 ACAAAACAA
1 TCAAAACAA
187128 ATTTTTTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 7 0.28
19 9 0.36
20 9 0.36
ACGTcount: A:0.66, C:0.17, G:0.00, T:0.17
Consensus pattern (18 bp):
TCAAAACAACAAATTAAA
Found at i:187601 original size:21 final size:22
Alignment explanation
Indices: 187547--187621 Score: 84
Period size: 21 Copynumber: 3.5 Consensus size: 22
187537 ACCCATAGGG
187547 GTATCGATACATATTCAAGGAAT
1 GTATCGATACATATTCAAGG-AT
*
187570 ATATC-AGTACATATTCAAGG-T
1 GTATCGA-TACATATTCAAGGAT
* *
187591 GTATCGATACATA-GCAAGGAG
1 GTATCGATACATATTCAAGGAT
187612 GTATCGATAC
1 GTATCGATAC
187622 TTGTACACAA
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
20 5 0.11
21 21 0.47
22 2 0.04
23 17 0.38
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28
Consensus pattern (22 bp):
GTATCGATACATATTCAAGGAT
Found at i:189361 original size:30 final size:30
Alignment explanation
Indices: 189320--189377 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
189310 GAAGGACCAG
*
189320 TCCATAGGTCCCAAAGAATATAGGTAACTA
1 TCCATAGGTCCCAAAGAACATAGGTAACTA
* *
189350 TCCATATGTCCCGAAGAACATAGGTAAC
1 TCCATAGGTCCCAAAGAACATAGGTAAC
189378 CCTCGACTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.22
Consensus pattern (30 bp):
TCCATAGGTCCCAAAGAACATAGGTAACTA
Found at i:193801 original size:22 final size:21
Alignment explanation
Indices: 193776--193826 Score: 57
Period size: 22 Copynumber: 2.4 Consensus size: 21
193766 TTCATGTATT
193776 CATATCATTGCTCTTATGATCA
1 CATATCATTGCTCTTATG-TCA
** * *
193798 CATATTTTTTCTCTTCTGTCA
1 CATATCATTGCTCTTATGTCA
193819 CATATCAT
1 CATATCAT
193827 ATGTGAATAT
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
21 9 0.39
22 14 0.61
ACGTcount: A:0.24, C:0.24, G:0.06, T:0.47
Consensus pattern (21 bp):
CATATCATTGCTCTTATGTCA
Found at i:194286 original size:19 final size:21
Alignment explanation
Indices: 194267--194310 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 21
194257 GTATTGGTAC
194267 CCCTA-TATGGTATCGATACCT
1 CCCTAGTATGGTATCGATA-CT
194288 CCCTAGTTATGGTATCGATACT
1 CCCTAG-TATGGTATCGATACT
194310 C
1 C
194311 ATTTTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 5 0.24
22 3 0.14
23 13 0.62
ACGTcount: A:0.23, C:0.27, G:0.16, T:0.34
Consensus pattern (21 bp):
CCCTAGTATGGTATCGATACT
Found at i:207897 original size:95 final size:95
Alignment explanation
Indices: 207792--207971 Score: 238
Period size: 95 Copynumber: 1.9 Consensus size: 95
207782 AAAAAGCAAA
* * * *
207792 GTATCGATACCATGGATTCCAGAATACCA-AAATGGTATCGATACTGAAAGG-GAGTATCAATAC
1 GTATCGATACCATGAATTACAGAAT-CCAGAAATGATATCAATACTGAAAGGAG-GTATCAATAC
*
207855 CATAGTATAGTAGTATCGATACTGAGAGAAAG
64 CATAGTATAGAAGTATCGATACTGAGAGAAAG
* ** **
207887 GTATCGATACCATGAATTATAGAATGTAGAAATGATATCAATACTGAAAGGAGGTATTGATACCA
1 GTATCGATACCATGAATTACAGAATCCAGAAATGATATCAATACTGAAAGGAGGTATCAATACCA
207952 TAGTATAGAAGTATCGATAC
66 TAGTATAGAAGTATCGATAC
207972 CATGAAGTAT
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
94 1 0.01
95 71 0.97
96 1 0.01
ACGTcount: A:0.40, C:0.13, G:0.21, T:0.26
Consensus pattern (95 bp):
GTATCGATACCATGAATTACAGAATCCAGAAATGATATCAATACTGAAAGGAGGTATCAATACCA
TAGTATAGAAGTATCGATACTGAGAGAAAG
Found at i:208421 original size:45 final size:45
Alignment explanation
Indices: 208352--208679 Score: 505
Period size: 45 Copynumber: 7.3 Consensus size: 45
208342 GTTTTCATTA
*
208352 CATAAATGAAATGCATAACAGTGCATTAAAGGCATGAAAGGATGT
1 CATAAATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGT
*
208397 CATAAATGAAATGCATAACGGTGCATTAAAGGTATGAAAGGAT-T
1 CATAAATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGT
* * *
208441 ACATAAATGAAATGTATAACGATGCATTAAAGGCATGAAATGATGT
1 -CATAAATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGT
* *
208487 CATAAATGAAATGCATAATGGTGCATTAAAGGCATGAAAGGATGC
1 CATAAATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGT
* *
208532 CATAAATGAAGTGCATAACGGTGCATTAAAGGCGTGAAAGGATGT
1 CATAAATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGT
* *
208577 CATAAATGAAATGCATAATGGTGCATTAAAGGCATGAAAGGATGC
1 CATAAATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGT
* **
208622 CATAAATGAAATTCATAACATTGCATTAAAGGCATGAAAGGATGT
1 CATAAATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGT
208667 CATAAATGGAAAT
1 CATAAAT-GAAAT
208680 AATGAATAAT
Statistics
Matches: 256, Mismatches: 24, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
44 1 0.00
45 249 0.97
46 6 0.02
ACGTcount: A:0.43, C:0.10, G:0.23, T:0.24
Consensus pattern (45 bp):
CATAAATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGT
Found at i:211677 original size:19 final size:19
Alignment explanation
Indices: 211653--211689 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
211643 AATTATAAAA
211653 ATAAAATAAAACAAAAAGT
1 ATAAAATAAAACAAAAAGT
*
211672 ATAAAATAAAATAAAAAG
1 ATAAAATAAAACAAAAAG
211690 CGTGTGGAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.76, C:0.03, G:0.05, T:0.16
Consensus pattern (19 bp):
ATAAAATAAAACAAAAAGT
Found at i:213991 original size:13 final size:13
Alignment explanation
Indices: 213959--213984 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
213949 AGGAGTTCTA
213959 ATTGACCGTTGGC
1 ATTGACCGTTGGC
213972 ATTGACCGTTGGC
1 ATTGACCGTTGGC
213985 CATGACCATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.31, T:0.31
Consensus pattern (13 bp):
ATTGACCGTTGGC
Found at i:220861 original size:17 final size:18
Alignment explanation
Indices: 220797--220847 Score: 84
Period size: 18 Copynumber: 2.8 Consensus size: 18
220787 TGTTTATGAG
* *
220797 GGAATTGGAATTTGTGAA
1 GGAATTAGAATCTGTGAA
220815 GGAATTAGAATCTGTGAA
1 GGAATTAGAATCTGTGAA
220833 GGAATTAGAATCTGT
1 GGAATTAGAATCTGT
220848 CAGGAATTGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.35, C:0.04, G:0.29, T:0.31
Consensus pattern (18 bp):
GGAATTAGAATCTGTGAA
Found at i:221446 original size:37 final size:38
Alignment explanation
Indices: 221389--221461 Score: 121
Period size: 37 Copynumber: 1.9 Consensus size: 38
221379 TTTCACCCTA
221389 AACCCGAACCCGACCCGAATATCACACTTAAAAAACCC
1 AACCCGAACCCGACCCGAATATCACACTTAAAAAACCC
* *
221427 AACCCG-ACTCGATCCGAATATCACACTTAAAAAAC
1 AACCCGAACCCGACCCGAATATCACACTTAAAAAAC
221462 TCGACCCAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
37 27 0.82
38 6 0.18
ACGTcount: A:0.42, C:0.36, G:0.08, T:0.14
Consensus pattern (38 bp):
AACCCGAACCCGACCCGAATATCACACTTAAAAAACCC
Found at i:222087 original size:18 final size:19
Alignment explanation
Indices: 222052--222089 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
222042 CATGGAATGT
222052 AAGATTACCAGTGGGAATAA
1 AAGATTACCAG-GGGAATAA
222072 AAGATTACCA-GGGAATAA
1 AAGATTACCAGGGGAATAA
222090 GATTACTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 8 0.44
20 10 0.56
ACGTcount: A:0.47, C:0.11, G:0.24, T:0.18
Consensus pattern (19 bp):
AAGATTACCAGGGGAATAA
Found at i:223241 original size:20 final size:18
Alignment explanation
Indices: 223211--223269 Score: 100
Period size: 18 Copynumber: 3.2 Consensus size: 18
223201 CAGTAATCCT
223211 ATTCCCTGGTAATCTTAC
1 ATTCCCTGGTAATCTTAC
223229 ATTCCCACTGGTAATCTTAC
1 ATT-CC-CTGGTAATCTTAC
223249 ATTCCCTGGTAATCTTAC
1 ATTCCCTGGTAATCTTAC
223267 ATT
1 ATT
223270 TCGTGAACCA
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
18 19 0.49
19 4 0.10
20 16 0.41
ACGTcount: A:0.24, C:0.27, G:0.10, T:0.39
Consensus pattern (18 bp):
ATTCCCTGGTAATCTTAC
Found at i:224172 original size:10 final size:10
Alignment explanation
Indices: 224157--224213 Score: 62
Period size: 10 Copynumber: 5.6 Consensus size: 10
224147 CTCATATATT
224157 TAAAAATCAA
1 TAAAAATCAA
224167 TAAAAATACAA
1 TAAAAAT-CAA
224178 TAAAAAT-AA
1 TAAAAATCAA
* *
224187 TTAAAAGTGAA
1 -TAAAAATCAA
*
224198 TAAAATTCAA
1 TAAAAATCAA
224208 TAAAAA
1 TAAAAA
224214 AAAGACGTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
9 2 0.05
10 26 0.65
11 12 0.30
ACGTcount: A:0.68, C:0.05, G:0.04, T:0.23
Consensus pattern (10 bp):
TAAAAATCAA
Found at i:224178 original size:11 final size:11
Alignment explanation
Indices: 224157--224185 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
224147 CTCATATATT
224157 TAAAAAT-CAA
1 TAAAAATACAA
224167 TAAAAATACAA
1 TAAAAATACAA
224178 TAAAAATA
1 TAAAAATA
224186 ATTAAAAGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.39
11 11 0.61
ACGTcount: A:0.72, C:0.07, G:0.00, T:0.21
Consensus pattern (11 bp):
TAAAAATACAA
Found at i:226841 original size:15 final size:14
Alignment explanation
Indices: 226813--226864 Score: 50
Period size: 16 Copynumber: 3.4 Consensus size: 14
226803 GATTATTATT
226813 TTTTTTTTGCTTTTAC
1 TTTTTTTT-CTTTT-C
*
226829 TTTTTTTTATTTTTC
1 TTTTTTTT-CTTTTC
*
226844 TGATTTTTTCTTTTC
1 T-TTTTTTTCTTTTC
226859 TTTTTT
1 TTTTTT
226865 ATGAAAATAA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
14 4 0.13
15 8 0.27
16 18 0.60
ACGTcount: A:0.06, C:0.10, G:0.04, T:0.81
Consensus pattern (14 bp):
TTTTTTTTCTTTTC
Found at i:227948 original size:17 final size:17
Alignment explanation
Indices: 227921--227959 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
227911 AATTTAAAAT
227921 TAATT-TAAATAATATC
1 TAATTATAAATAATATC
227937 TAATTATAAATAATATC
1 TAATTATAAATAATATC
227954 TAATTA
1 TAATTA
227960 ATTTGATTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (17 bp):
TAATTATAAATAATATC
Found at i:235798 original size:2 final size:2
Alignment explanation
Indices: 235781--235826 Score: 58
Period size: 2 Copynumber: 23.5 Consensus size: 2
235771 TTATTATTAC
* * *
235781 AT AT AC AT AC AT AT AT AT AT GT -T AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
235822 AT AT A
1 AT AT A
235827 ACACCATTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (2 bp):
AT
Found at i:235815 original size:21 final size:21
Alignment explanation
Indices: 235782--235821 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
235772 TATTATTACA
235782 TATACATACATATATATATGT
1 TATACATACATATATATATGT
* *
235803 TATATATATATATATATAT
1 TATACATACATATATATAT
235822 ATATAACACC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.45, C:0.05, G:0.03, T:0.47
Consensus pattern (21 bp):
TATACATACATATATATATGT
Found at i:242662 original size:3 final size:3
Alignment explanation
Indices: 242654--242680 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
242644 TGAAATCCTC
242654 TGG TGG TGG TGG TGG TGG TGG TGG TGG
1 TGG TGG TGG TGG TGG TGG TGG TGG TGG
242681 CTTTTCTGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.67, T:0.33
Consensus pattern (3 bp):
TGG
Found at i:244851 original size:12 final size:11
Alignment explanation
Indices: 244833--244862 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
244823 TTTGTCCCGT
244833 TATTATTTATA
1 TATTATTTATA
244844 TCATTATTTATA
1 T-ATTATTTATA
244856 TATTATT
1 TATTATT
244863 ATTGTATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (11 bp):
TATTATTTATA
Found at i:244861 original size:26 final size:26
Alignment explanation
Indices: 244832--244889 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 26
244822 TTTTGTCCCG
*
244832 TTATTATT-TATATCATTATT-TATATA
1 TTATTATTGTAT-T-ATTATTATAAATA
244858 TTATTATTGTATTATTATTATAAATA
1 TTATTATTGTATTATTATTATAAATA
244884 TTATTA
1 TTATTA
244890 ATAAATAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 6 0.21
26 20 0.69
27 3 0.10
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (26 bp):
TTATTATTGTATTATTATTATAAATA
Found at i:244863 original size:14 final size:14
Alignment explanation
Indices: 244832--244878 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
244822 TTTTGTCCCG
244832 TTATTA-TT-TATA
1 TTATTATTTATATA
*
244844 TCATTATTTATATA
1 TTATTATTTATATA
244858 TTATTATTGTAT-TA
1 TTATTATT-TATATA
244872 TTATTAT
1 TTATTAT
244879 AAATATTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 5 0.17
13 2 0.07
14 20 0.67
15 3 0.10
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (14 bp):
TTATTATTTATATA
Found at i:247507 original size:28 final size:29
Alignment explanation
Indices: 247476--247541 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 29
247466 AAAATATTAC
* *
247476 TAAAATTAAAA-TATTAAAGA-TTAGGGAT
1 TAAAATTAAAATTATCAAA-ATTTAGGAAT
*
247504 TAAAATAAAAATTATCAAAATTTAGGAAT
1 TAAAATTAAAATTATCAAAATTTAGGAAT
*
247533 TAAATTTAA
1 TAAAATTAA
247542 TATTTACCCT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
28 11 0.35
29 20 0.65
ACGTcount: A:0.56, C:0.02, G:0.09, T:0.33
Consensus pattern (29 bp):
TAAAATTAAAATTATCAAAATTTAGGAAT
Found at i:248668 original size:3 final size:3
Alignment explanation
Indices: 248651--248706 Score: 60
Period size: 3 Copynumber: 18.0 Consensus size: 3
248641 TATTATGTAT
* *
248651 TAA TAA TAT TTA TAA TAA TAA TAA TAA TAA TACA TAAA TAA TAA T-A
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A T-AA TAA TAA TAA
248697 TAAA TAA TAA
1 T-AA TAA TAA
248707 CGGGACGAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
2 2 0.04
3 36 0.80
4 6 0.13
5 1 0.02
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:252081 original size:13 final size:13
Alignment explanation
Indices: 252060--252093 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
252050 TGCTTCATTA
*
252060 TTTGCAATCAAGT
1 TTTGAAATCAAGT
252073 TTTGAAATCAAGT
1 TTTGAAATCAAGT
252086 TTTGAAAT
1 TTTGAAAT
252094 TACTCCCCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.35, C:0.09, G:0.15, T:0.41
Consensus pattern (13 bp):
TTTGAAATCAAGT
Found at i:254397 original size:20 final size:20
Alignment explanation
Indices: 254368--254405 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
254358 AGAACCCCAG
*
254368 GGGGGTATCGATTCCCCTGT
1 GGGGGAATCGATTCCCCTGT
*
254388 GGGGGAATCGGTTCCCCT
1 GGGGGAATCGATTCCCCT
254406 TCAAAGGGGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.11, C:0.26, G:0.37, T:0.26
Consensus pattern (20 bp):
GGGGGAATCGATTCCCCTGT
Found at i:254440 original size:20 final size:21
Alignment explanation
Indices: 254388--254448 Score: 72
Period size: 20 Copynumber: 2.9 Consensus size: 21
254378 ATTCCCCTGT
254388 GGGGGAATCGGTTCCCCTTCAAA
1 GGGGGAATCGGTT-CCC-TCAAA
254411 GGGGGAATCGGTTCCCTC-AA
1 GGGGGAATCGGTTCCCTCAAA
*
254431 GGGAGG-ATCGATTCCCTC
1 GGG-GGAATCGGTTCCCTC
254449 TGCACCAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
20 16 0.44
21 4 0.11
22 3 0.08
23 13 0.36
ACGTcount: A:0.20, C:0.26, G:0.33, T:0.21
Consensus pattern (21 bp):
GGGGGAATCGGTTCCCTCAAA
Found at i:257875 original size:24 final size:24
Alignment explanation
Indices: 257846--257893 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
257836 TAGAATAAAT
257846 GAGCAACCAAATAAAATAAAAAAA
1 GAGCAACCAAATAAAATAAAAAAA
257870 GAGCAACCAAATAAAATAAAAAAA
1 GAGCAACCAAATAAAATAAAAAAA
257894 TTAGTTTAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.71, C:0.12, G:0.08, T:0.08
Consensus pattern (24 bp):
GAGCAACCAAATAAAATAAAAAAA
Found at i:266487 original size:575 final size:576
Alignment explanation
Indices: 265384--266537 Score: 2146
Period size: 575 Copynumber: 2.0 Consensus size: 576
265374 TGTGTGTTGG
265384 TCATGTAATGGTTTTCATTTTTAAAAATATTACAGTAATTTCCCATCTCTGCTTTTTCTTCAAAC
1 TCATGTAATGGTTTTCATTTTTAAAAATATTACAGTAATTTCCCATCTCTGCTTTTTCTTCAAAC
265449 TGTCATCCAAGTCCCAAATATTTGATTTAACTGAGCACCAAAACCCACCAGACTTTGTTGTCTTT
66 TGTCATCCAAGTCCCAAATATTTGATTTAACTGAGCACCAAAACCCACCAGACTTTGTTGTCTTT
*
265514 TTGATTTTTTCTGTTTTACTTATGCACTATTCCTCTACTTGATCTTTATAAGTCTGCAACAATGG
131 TTGATTATTTCTGTTTTACTTATGCACTATTCCTCTACTTGATCTTTATAAGTCTGCAACAATGG
265579 TCATCTGAATGACATCTTTAAATACTTGAAGTGCTAAACTTTTTGAATGCAGGATCCAGAGCCAT
196 TCATCTGAATGACATCTTTAAATACTTGAAGTGCTAAACTTTTTGAATGCAGGATCCAGAGCCAT
265644 CAGTTGAGTTTGACACTGTTGCCAACGAGAAGCAGCAGCACAGTTAATGTTGGTAAGACTCCTCA
261 CAGTTGAGTTTGACACTGTTGCCAACGAGAAGCAGCAGCACAGTTAATGTTGGTAAGACTCCTCA
265709 TCCTTTTTAAAGTACACGACGAAGTTGCTGTTTCAGTTTCTTTGAGCAGTCTCTGCCTACACTTG
326 TCC-TTTTAAAGTACACGACGAAGTTGCTGTTTCAGTTTCTTTGAGCAGTCTCTGCCTACACTTG
265774 ATTTCAATAGATTGAATCAGAATCATAATTCTAACTAAGTTCTATGGGATTCAGCAATCTCAAAT
390 ATTTCAATAGATTGAATCAGAATCATAATTCTAACTAAGTTCTATGGGATTCAGCAA-CTCAAAT
265839 TCTTTTGGATTTGGCGGACACAACTCTGTGGTGGCATTTTCAGCCTTCAAGCCATGAAAGTCTGA
454 TCTTTTGGATTTGGCGGACACAACTCTGTGGTGGCATTTTCAGCCTTCAAGCCATGAAAGTCTGA
265904 GTCACGTATGGTGTGCATTTGT-AGAGAAGATGATGATAGATCTTGGAGAGTCAGCTA
519 GTCACGTATGGTGTGCATTTGTAAGAGAAGATGATGATAGATCTTGGAGAGTCAGCTA
265961 TCATGTAATGGTTTTCATTTTTAAAAAATATTTACAGTAATTTCCCATCTCTGCTTTTTCTTCAA
1 TCATGTAATGGTTTTCATTTTT-AAAAATA-TTACAGTAATTTCCCATCTCTGCTTTTTCTTCAA
266026 ACTGTCATCCAAGTCCC-AATATTTGATTTAACTGAGCACCAAAACCCACCAGACTTTGTTGTCT
64 ACTGTCATCCAAGTCCCAAATATTTGATTTAACTGAGCACCAAAACCCACCAGACTTTGTTGTCT
266090 TTTTGATTATTT-TGTTTTACTTATGCACTATTTCCTCTACTTGATC-TTATAAGTCTGCAACAA
129 TTTTGATTATTTCTGTTTTACTTATGCACTA-TTCCTCTACTTGATCTTTATAAGTCTGCAACAA
266153 TGGTCATCTGAATGACATCTTTAAATACTTGAAGTGCTAAAC-TTTTGAATGCAGGATCCAGAGC
193 TGGTCATCTGAATGACATCTTTAAATACTTGAAGTGCTAAACTTTTTGAATGCAGGATCCAGAGC
266217 CATCAG-TGAGTTTGACACTGTTGCCAACGAGAAGCAGCAGCACGAGGTTAATGTTGGTAAGACT
258 CATCAGTTGAGTTTGACACTGTTGCCAACGAGAAGCAGCAGCAC-A-GTTAATGTTGGTAAGACT
266281 CCTCATCC-TTTAAAGTACACGACGAAGTTGCTGTTTCAGTTTCTTTGAGCATGTCTCTGCCTAC
321 CCTCATCCTTTTAAAGTACACGACGAAGTTGCTGTTTCAGTTTCTTTGAGCA-GTCTCTGCCTAC
266345 AC-TGATTTCAATAGATTTGAATCAGAATCCATAATTCTAACTAAGTTCTATGGGATTCAGCAA-
385 ACTTGATTTCAATAGA-TTGAATCAGAAT-CATAATTCTAACTAAGTTCTATGGGATTCAGCAAC
266408 TCAAATTCTTTTGGATTTGGCGGACACAACTCTGTGGTGGCATTTTCAGCCTTCAAGCCATGAAA
448 TCAAATTCTTTTGGATTTGGCGGACACAACTCTGTGGTGGCATTTTCAGCCTTCAAGCCATGAAA
266473 GTCTGAGTCACGTATGGTGTGCATTTGTAAGAGAAGATGATGATAGATCTTGGAGAGTCAGCTA
513 GTCTGAGTCACGTATGGTGTGCATTTGTAAGAGAAGATGATGATAGATCTTGGAGAGTCAGCTA
266537 T
1 T
266538 TTATGATGGG
Statistics
Matches: 567, Mismatches: 1, Indels: 19
0.97 0.00 0.03
Matches are distributed among these distances:
575 186 0.33
576 91 0.16
577 159 0.28
578 80 0.14
579 51 0.09
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (576 bp):
TCATGTAATGGTTTTCATTTTTAAAAATATTACAGTAATTTCCCATCTCTGCTTTTTCTTCAAAC
TGTCATCCAAGTCCCAAATATTTGATTTAACTGAGCACCAAAACCCACCAGACTTTGTTGTCTTT
TTGATTATTTCTGTTTTACTTATGCACTATTCCTCTACTTGATCTTTATAAGTCTGCAACAATGG
TCATCTGAATGACATCTTTAAATACTTGAAGTGCTAAACTTTTTGAATGCAGGATCCAGAGCCAT
CAGTTGAGTTTGACACTGTTGCCAACGAGAAGCAGCAGCACAGTTAATGTTGGTAAGACTCCTCA
TCCTTTTAAAGTACACGACGAAGTTGCTGTTTCAGTTTCTTTGAGCAGTCTCTGCCTACACTTGA
TTTCAATAGATTGAATCAGAATCATAATTCTAACTAAGTTCTATGGGATTCAGCAACTCAAATTC
TTTTGGATTTGGCGGACACAACTCTGTGGTGGCATTTTCAGCCTTCAAGCCATGAAAGTCTGAGT
CACGTATGGTGTGCATTTGTAAGAGAAGATGATGATAGATCTTGGAGAGTCAGCTA
Found at i:268252 original size:58 final size:57
Alignment explanation
Indices: 268160--268291 Score: 239
Period size: 58 Copynumber: 2.3 Consensus size: 57
268150 TCGGGTTTTT
268160 TAACAAAACCGGTAAAAACATTATCGATTTTGTTATGACGGTTTTGTTATTGTTATGCA
1 TAACAAAACCGGTAAAAACATTATCGATTTTGTTATGACGGTTTTGTTA-T-TTATGCA
268219 T-ACAAAACCGGTAAAAACATTATCGATTTTGTTATGACGGTTTTGTTATTTATGCA
1 TAACAAAACCGGTAAAAACATTATCGATTTTGTTATGACGGTTTTGTTATTTATGCA
268275 TAACAAAACCGGTAAAA
1 TAACAAAACCGGTAAAA
268292 TTACCGAAAA
Statistics
Matches: 72, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
56 8 0.11
57 16 0.22
58 47 0.65
59 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.36
Consensus pattern (57 bp):
TAACAAAACCGGTAAAAACATTATCGATTTTGTTATGACGGTTTTGTTATTTATGCA
Found at i:269642 original size:14 final size:15
Alignment explanation
Indices: 269614--269643 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
269604 ATGTATTGTG
269614 TTTTATTTTTCTAAA
1 TTTTATTTTTCTAAA
269629 TTTTATTTTT-TAAA
1 TTTTATTTTTCTAAA
269643 T
1 T
269644 AAAATTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTTATTTTTCTAAA
Found at i:271298 original size:16 final size:17
Alignment explanation
Indices: 271257--271299 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
271247 TTTTTACTGT
271257 TATATCTTT-TATGTAC
1 TATATCTTTATATGTAC
*
271273 TATGTCCTTTAT-TGTAC
1 TATAT-CTTTATATGTAC
271290 TATATCTTTA
1 TATATCTTTA
271300 AGTAATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
16 9 0.39
17 13 0.57
18 1 0.04
ACGTcount: A:0.23, C:0.14, G:0.07, T:0.56
Consensus pattern (17 bp):
TATATCTTTATATGTAC
Found at i:271764 original size:47 final size:47
Alignment explanation
Indices: 271707--271903 Score: 199
Period size: 47 Copynumber: 4.2 Consensus size: 47
271697 ATGCAACATT
* *
271707 ACTGCTAGTAAC-GATATGGCACATTTAGTACACAATATACAGTATAA
1 ACTGCTAGTAACAG-TATGGCACATTCAGTACACAGTATACAGTATAA
* * * * * * *
271754 ACTGCCAGTAATAGTATGTCACATTCAGTGCCCAGTATGCATTATAA
1 ACTGCTAGTAACAGTATGGCACATTCAGTACACAGTATACAGTATAA
*
271801 ACTG-TCATTAACAGTATGGCACATTCAGTAC-CTAGTATGA-AGTATAA
1 ACTGCT-AGTAACAGTATGGCACATTCAGTACAC-AGTAT-ACAGTATAA
* * *
271848 ACTGCTAGTAACAATATGGCACATTCAATGCACAGTATACAG--TAA
1 ACTGCTAGTAACAGTATGGCACATTCAGTACACAGTATACAGTATAA
271893 ACTGCTAGTAA
1 ACTGCTAGTAA
271904 AATATCGCAC
Statistics
Matches: 123, Mismatches: 20, Indels: 16
0.77 0.13 0.10
Matches are distributed among these distances:
45 14 0.11
46 2 0.02
47 104 0.85
48 3 0.02
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (47 bp):
ACTGCTAGTAACAGTATGGCACATTCAGTACACAGTATACAGTATAA
Found at i:290060 original size:25 final size:23
Alignment explanation
Indices: 290011--290069 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
290001 ATATATATTT
*
290011 AACATATAATAA-AAAAATACTAA
1 AACATATAA-AACAAAAATAATAA
*
290034 AATATATTAAAACAAAAATAATGAA
1 AACATA-TAAAACAAAAATAAT-AA
290059 AACATATAAAA
1 AACATATAAAA
290070 TAATTGACTA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
23 7 0.23
24 16 0.53
25 7 0.23
ACGTcount: A:0.69, C:0.07, G:0.02, T:0.22
Consensus pattern (23 bp):
AACATATAAAACAAAAATAATAA
Found at i:291392 original size:3 final size:3
Alignment explanation
Indices: 291384--291437 Score: 65
Period size: 3 Copynumber: 17.7 Consensus size: 3
291374 AATATATATT
* *
291384 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-A TATA TGGA TAA AAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A T-AA TAA TAA
291430 TAA TAA TA
1 TAA TAA TA
291438 TGGATAAAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
2 2 0.05
3 38 0.86
4 4 0.09
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:291440 original size:18 final size:18
Alignment explanation
Indices: 291386--291447 Score: 72
Period size: 18 Copynumber: 3.4 Consensus size: 18
291376 TATATATTTA
* *
291386 ATAATAATAATAATAAT-A
1 ATAAAAATAATAAT-ATGG
*
291404 ATAATAATAATATATATGG
1 ATAAAAATAATA-ATATGG
291423 ATAAAAATAATAATATGG
1 ATAAAAATAATAATATGG
291441 ATAAAAA
1 ATAAAAA
291448 ATTAGTATCT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
18 27 0.68
19 13 0.32
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (18 bp):
ATAAAAATAATAATATGG
Found at i:292052 original size:107 final size:112
Alignment explanation
Indices: 291749--292290 Score: 851
Period size: 107 Copynumber: 4.9 Consensus size: 112
291739 AGAATTATGC
* * * *
291749 AAAA-GTTGAACAAGTTCTTCTTATTATGAACTTCTTTTTTCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
*
291813 TATGAAC-TTCTCTGGAAAAGATAATCCATCAATTGATGAATTCAGGT
66 TATGAACTTTCTCTGGAAAA-ATAATCCATCAATTGATGAATTTAGGT
291860 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
*
291925 TATGAAC-TTCGCTGGAAAAA-ATATCCATCAATTGATGAATTTAGGT
66 TATGAACTTTCTCTGGAAAAATA-ATCCATCAATTGATGAATTTAGGT
291971 -AAAGGTTGAAC-AATT-TTCTCATTATGAAC-TCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
292032 TATGAACTTTCTCTGGAAAAAATAATCCATCAATTTGATGAATTTAGGT
66 TATGAACTTTCTCTGG-AAAAATAATCCATCAA-TTGATGAATTTAGGT
292081 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
292146 TATGAACTTTCTCTGG-AAAA-AATCCAT---TTGATGAATTTAGGT
66 TATGAACTTTCTCTGGAAAAATAATCCATCAATTGATGAATTTAGGT
292188 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * *
292253 TATGAACCTTTC-CTGGAAAAGCTAATCTATCAAATGAT
66 TATGAA-CTTTCTCTGGAAAA-ATAATCCATCAATTGAT
292291 AGATTTGAAT
Statistics
Matches: 404, Mismatches: 10, Indels: 32
0.91 0.02 0.07
Matches are distributed among these distances:
107 129 0.32
108 29 0.07
109 18 0.04
110 34 0.08
111 46 0.11
112 82 0.20
113 18 0.04
114 48 0.12
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (112 bp):
AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
TATGAACTTTCTCTGGAAAAATAATCCATCAATTGATGAATTTAGGT
Found at i:292153 original size:221 final size:219
Alignment explanation
Indices: 291749--292290 Score: 864
Period size: 221 Copynumber: 2.5 Consensus size: 219
291739 AGAATTATGC
* * *
291749 AAAA-GTTGAACAAGTTCTTCTTATTATGAACTTCTTTTTTCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAA-TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
*
291813 TATGAAC-TTCTCTGGAAAAGATAATCCATCAATTGATGAATTCAGGTAAAAGGTTGAACAAATT
65 TATGAACTTTCTCTGGAAAAAATAATCCATCAATTGATGAATTCAGGTAAAAGGTTGAACAAATT
291877 CTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAAC-TTCGCTGGA
130 CTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCGCTGG-
291941 AAAAATATCCATCAATTGATGAATTTAGGT
194 AAAAA-ATCCAT---TTGATGAATTTAGGT
291971 -AAAGGTTGAACAATT-TTCTCATTATGAAC-TCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGGTTGAACAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
*
292033 ATGAACTTTCTCTGGAAAAAATAATCCATCAATTTGATGAATTTAGGTAAAAGGTTGAACAAATT
66 ATGAACTTTCTCTGGAAAAAATAATCCATCAA-TTGATGAATTCAGGTAAAAGGTTGAACAAATT
*
292098 CTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGA
130 CTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCGCTGGA
292163 AAAAATCCATTTGATGAATTTAGGT
195 AAAAATCCATTTGATGAATTTAGGT
292188 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAAC-AATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
** * *
292253 TATGAACCTTTC-CTGGAAAAGCTAATCTATCAAATGAT
65 TATGAA-CTTTCTCTGGAAAAAATAATCCATCAATTGAT
292291 AGATTTGAAT
Statistics
Matches: 301, Mismatches: 10, Indels: 20
0.91 0.03 0.06
Matches are distributed among these distances:
217 15 0.05
218 11 0.04
219 41 0.14
220 61 0.20
221 152 0.50
222 21 0.07
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (219 bp):
AAAAGGTTGAACAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
ATGAACTTTCTCTGGAAAAAATAATCCATCAATTGATGAATTCAGGTAAAAGGTTGAACAAATTC
TTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCGCTGGAA
AAAATCCATTTGATGAATTTAGGT
Found at i:293128 original size:83 final size:83
Alignment explanation
Indices: 293027--293557 Score: 915
Period size: 83 Copynumber: 6.5 Consensus size: 83
293017 GTTCCTACCA
*
293027 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAATT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAACT
293092 CAATGATTGGTTCTGTCC
66 CAATGATTGGTTCTGTCC
* *
293110 AACTAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTTATCTTCTAAACT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAACT
293175 CAATGATTGGTTCTGTCC
66 CAATGATTGGTTCTGTCC
*
293193 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTTATCTTCTAAACT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAACT
293258 CAATGATTGGTTCTGTCC
66 CAATGATTGGTTCTGTCC
*
293276 AA-CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGC-AATTCATCTTCT-AATT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAACT
293338 CAATGATTGGTTCTGTCC
66 CAATGATTGGTTCTGTCC
*
293356 AACCAGATCAGAT-ACTCAAAGAACACTTCCAG-A-A-G--ATTGGCAAATTCATCTTCTAAATT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAACT
293415 CAATGATTGGTTCTGTCC
66 CAATGATTGGTTCTGTCC
*
293433 AACC---TCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTTATCTTCTAAACT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAACT
293495 CAATGATTGGTTCTGTCC
66 CAATGATTGGTTCTGTCC
293513 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTG
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTG
293558 AGTCTCTTTC
Statistics
Matches: 428, Mismatches: 8, Indels: 24
0.93 0.02 0.05
Matches are distributed among these distances:
74 6 0.01
75 25 0.06
76 13 0.03
77 28 0.07
78 2 0.00
79 1 0.00
80 86 0.20
81 21 0.05
82 44 0.10
83 202 0.47
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.29
Consensus pattern (83 bp):
AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAACT
CAATGATTGGTTCTGTCC
Found at i:305357 original size:18 final size:17
Alignment explanation
Indices: 305309--305359 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 17
305299 GAATACTTAC
*
305309 AAATAAAATAAAACATAT
1 AAAT-AAATAAAAAATAT
*
305327 AAAT-ATTATAAAAATAAT
1 AAATAAATA-AAAAAT-AT
305345 AAATAAATAAAAAAT
1 AAATAAATAAAAAAT
305360 TTGAAAAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
16 3 0.11
17 5 0.19
18 16 0.59
19 3 0.11
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (17 bp):
AAATAAATAAAAAATAT
Done.