genome.fa.s7836.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007836.1 Hibiscus syriacus cultivar Beakdansim tig00110185_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  183289

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5460--5545	40	2.2	39	91	2	136	18	22	29	30	1.97
12101--12183	29	2.9	28	87	7	121	19	37	32	10	1.86
12327--12383	29	2.0	29	89	6	89	10	33	35	21	1.87
17232--17261	8	3.8	8	100	0	60	90	0	10	0	0.47
41289--41403	58	2.0	56	91	3	185	35	9	26	28	1.88
42877--42991	24	4.8	24	86	4	151	25	13	20	40	1.89
42892--42930	12	3.2	12	79	13	53	28	12	23	35	1.91
42877--43008	48	2.8	48	85	2	167	25	12	20	41	1.87
42880--43008	24	5.4	24	84	3	143	26	11	20	41	1.87
46211--46239	15	1.9	15	100	0	58	48	13	6	31	1.69
46357--46743	183	2.1	184	91	2	620	43	3	8	45	1.49
46749--46782	9	3.7	9	88	4	50	20	8	17	52	1.71
57878--57902	2	12.5	2	100	0	50	48	0	52	0	1.00
58656--58709	6	9.0	6	97	0	81	16	61	5	16	1.53
60508--60551	18	2.4	18	100	0	88	22	43	18	15	1.88
81592--81626	17	1.9	19	88	11	56	65	20	8	5	1.40
81744--81778	16	2.2	16	100	0	70	54	20	14	11	1.70
82275--82354	39	2.1	39	100	0	160	41	12	17	28	1.86
82491--83074	238	2.5	238	95	0	1044	34	17	17	30	1.93
82867--83280	207	2.0	210	85	1	555	39	15	17	27	1.90
83077--83949	234	3.7	236	81	4	1023	39	16	16	28	1.90
89805--90627	411	2.0	411	98	0	1601	41	15	13	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95718--95776	21	2.6	21	85	15	82	44	5	0	50	1.24
96007--96373	41	9.0	41	75	5	278	29	17	17	35	1.93
96007--96184	81	2.2	82	82	7	202	27	19	17	35	1.94
96025--96337	122	2.6	122	84	1	376	30	18	16	33	1.94
98994--99054	23	2.7	23	86	0	86	19	26	24	29	1.99
104159--104197	19	1.9	19	85	10	51	33	0	25	41	1.56
107153--107189	20	1.9	19	89	10	58	48	10	24	16	1.77
113798--113822	13	1.9	13	100	0	50	80	0	8	12	0.92
120813--121727	299	3.0	303	89	5	1439	45	16	16	21	1.86
122432--122474	21	2.0	21	86	0	59	23	20	13	41	1.88
122492--122567	21	3.7	21	75	10	84	38	23	17	21	1.93
122712--122758	22	2.1	22	96	0	85	21	44	14	19	1.86
123152--123239	39	2.2	40	93	2	151	13	17	22	46	1.83
123153--123242	20	4.6	20	83	2	119	13	15	22	48	1.79
125142--125210	20	3.5	20	91	0	111	34	26	21	17	1.95
125141--125229	40	2.4	37	78	14	103	37	23	22	16	1.94
125215--125272	19	3.0	19	84	2	80	50	22	15	12	1.77
125290--125319	14	2.1	14	93	0	51	13	20	23	43	1.86
125307--125359	20	2.7	19	91	5	79	16	22	26	33	1.96
125345--125388	20	2.2	21	84	12	65	13	15	22	47	1.81
125867--125983	21	5.6	21	70	4	67	23	33	17	26	1.96
125866--125983	42	2.8	42	79	3	123	22	33	16	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127372--127419	15	3.3	14	77	8	51	37	0	14	47	1.44
127393--127520	36	3.4	36	69	19	107	27	3	17	52	1.59
127439--127475	14	2.6	14	91	0	65	27	0	24	48	1.51
127378--127521	77	1.8	77	94	2	252	28	2	16	52	1.58
127595--127648	20	2.7	20	85	5	74	42	27	18	11	1.84
127642--127684	20	2.2	20	87	4	61	25	18	23	32	1.97
127691--127855	20	8.9	20	68	15	120	26	17	21	34	1.95
127730--127827	34	2.9	34	85	0	133	24	16	23	35	1.95
127826--128108	140	2.0	140	94	0	494	43	15	12	28	1.83
128166--128200	18	1.9	18	94	0	61	17	2	25	54	1.57
131330--131420	20	4.5	20	77	8	103	24	18	27	29	1.98
132106--132208	29	3.5	29	75	5	98	44	6	2	45	1.45
136691--136875	100	1.9	99	90	1	298	39	21	8	31	1.82
137174--137218	20	2.2	20	84	7	56	46	2	4	46	1.35
137419--137494	31	2.4	31	74	14	73	44	1	1	52	1.17
142276--142311	2	18.0	2	94	0	63	52	0	47	0	1.00
153178--153489	80	3.9	80	89	3	475	22	19	24	33	1.97
153855--153929	28	2.7	27	71	17	64	33	12	2	52	1.53
156963--157014	20	2.6	20	96	0	95	38	26	13	21	1.90
157070--157438	20	18.5	20	85	4	458	34	26	18	20	1.96
160645--160970	19	18.4	19	81	15	414	46	18	20	14	1.83
160645--160970	33	9.2	34	82	13	321	46	18	20	14	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
160676--161008	161	2.1	156	92	4	551	46	17	21	15	1.84
160673--160992	52	6.0	52	92	4	541	46	17	21	14	1.83
160999--161081	20	4.6	19	81	15	113	14	24	18	43	1.87
161188--161224	14	2.6	14	91	0	65	45	21	0	32	1.52
163180--163272	33	2.8	33	93	0	159	46	21	21	10	1.81
163143--163277	19	7.6	19	76	16	128	45	23	20	11	1.83
163199--163255	14	3.7	14	75	20	51	43	22	22	10	1.84
163273--163401	19	7.3	19	75	17	125	8	17	28	45	1.77
163273--163364	33	2.8	33	93	3	150	7	18	28	45	1.76
163445--163915	92	5.1	93	98	1	903	46	18	12	22	1.83
165616--165705	14	5.7	14	74	23	81	42	23	25	8	1.83
165608--165722	33	3.5	33	95	0	212	45	20	24	9	1.81
165615--165727	19	6.8	18	72	23	88	43	22	24	9	1.83
165738--165792	14	3.6	14	73	21	56	9	25	23	41	1.83
165733--165814	33	2.5	33	89	2	119	9	25	21	42	1.84
165745--165833	20	4.8	20	72	19	75	12	24	19	43	1.85
165912--165982	33	2.2	33	92	0	115	47	18	22	11	1.80
166162--166216	22	2.5	22	81	0	74	20	16	40	23	1.91
166362--166554	20	9.6	20	82	5	219	19	19	25	35	1.95
166362--166554	60	3.2	60	83	0	251	19	19	25	35	1.95
166610--166661	20	2.6	20	96	0	95	21	13	26	38	1.90
171871--171953	42	2.0	43	92	2	141	30	15	13	40	1.85

Tables:   1

The End!