Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007838.1 Hibiscus syriacus cultivar Beakdansim tig00110187_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3429202
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 3 of 13
Found at i:669284 original size:24 final size:24
Alignment explanation
Indices: 669257--669316 Score: 65
Period size: 23 Copynumber: 2.6 Consensus size: 24
669247 TAGTTTTAAG
*
669257 TATTTTTATTAGAAT-TTATTT-CCT
1 TATTTTTATGA-AATATT-TTTACCT
669281 TA-TTTTATGAAATATTTTTACCT
1 TATTTTTATGAAATATTTTTACCT
669304 TATTTTTA-GAAAT
1 TATTTTTATGAAAT
669317 TTGAAGGCTA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
22 6 0.19
23 19 0.59
24 7 0.22
ACGTcount: A:0.30, C:0.07, G:0.05, T:0.58
Consensus pattern (24 bp):
TATTTTTATGAAATATTTTTACCT
Found at i:669632 original size:18 final size:17
Alignment explanation
Indices: 669599--669632 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
669589 TTATGGGCTT
*
669599 ATTTTCAAATCAAAATA
1 ATTTTCAAACCAAAATA
669616 ATTTTCAAAACCAAAAT
1 ATTTTC-AAACCAAAAT
669633 TCGATGTTGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.53, C:0.15, G:0.00, T:0.32
Consensus pattern (17 bp):
ATTTTCAAACCAAAATA
Found at i:670808 original size:8 final size:9
Alignment explanation
Indices: 670790--670816 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
670780 TTATATCACC
670790 TTTATTTTT
1 TTTATTTTT
670799 TTTATTTTT
1 TTTATTTTT
670808 TTTATTTTT
1 TTTATTTTT
670817 AATCTTGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (9 bp):
TTTATTTTT
Found at i:671687 original size:22 final size:23
Alignment explanation
Indices: 671662--671706 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
671652 ACTAAGAAAT
*
671662 TATAAAAATAATC-TAAATTTAA
1 TATAAAAAGAATCATAAATTTAA
*
671684 TATAATAAGAATCATAAATTTAA
1 TATAAAAAGAATCATAAATTTAA
671707 CTTATACAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.36
Consensus pattern (23 bp):
TATAAAAAGAATCATAAATTTAA
Found at i:673708 original size:7 final size:7
Alignment explanation
Indices: 673696--673720 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
673686 AGGACAGGTT
673696 AATTATG
1 AATTATG
673703 AATTATG
1 AATTATG
673710 AATTATG
1 AATTATG
673717 AATT
1 AATT
673721 GTGGGTGTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (7 bp):
AATTATG
Found at i:676538 original size:2 final size:2
Alignment explanation
Indices: 676531--676555 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
676521 AGTGATTCAA
676531 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
676556 ATTGTAGCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:677326 original size:16 final size:16
Alignment explanation
Indices: 677307--677350 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
677297 TCCCTACTTG
677307 ATTAAATATTTACTAA
1 ATTAAATATTTACTAA
* **
677323 ATTATATATTTTTTAA
1 ATTAAATATTTACTAA
*
677339 TTTAAATATTTA
1 ATTAAATATTTA
677351 TTTTTACATG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (16 bp):
ATTAAATATTTACTAA
Found at i:678875 original size:14 final size:14
Alignment explanation
Indices: 678856--678916 Score: 61
Period size: 14 Copynumber: 4.1 Consensus size: 14
678846 TCTAATAATG
*
678856 TTCATATTCATATA
1 TTCATATACATATA
678870 TTCATATACATATA
1 TTCATATACATATA
*
678884 TTTC-TTTAACTAATATA
1 -TTCATAT-AC--ATATA
678901 TTCATATACATATA
1 TTCATATACATATA
678915 TT
1 TT
678917 TCCTTAACTA
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
14 22 0.56
15 5 0.13
16 5 0.13
17 7 0.18
ACGTcount: A:0.38, C:0.13, G:0.00, T:0.49
Consensus pattern (14 bp):
TTCATATACATATA
Found at i:678903 original size:31 final size:31
Alignment explanation
Indices: 678865--678927 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
678855 GTTCATATTC
*
678865 ATATATTCATATACATATATTTCTTTAACTA
1 ATATATTCATATACATATATTTCCTTAACTA
678896 ATATATTCATATACATATATTTCCTTAACTA
1 ATATATTCATATACATATATTTCCTTAACTA
678927 A
1 A
678928 GGACGAATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.40, C:0.14, G:0.00, T:0.46
Consensus pattern (31 bp):
ATATATTCATATACATATATTTCCTTAACTA
Found at i:681914 original size:2 final size:2
Alignment explanation
Indices: 681909--681939 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
681899 TTTAGGTTGA
681909 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
681940 ATGTTTATTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:685364 original size:21 final size:18
Alignment explanation
Indices: 685317--685374 Score: 53
Period size: 21 Copynumber: 2.9 Consensus size: 18
685307 TAGAGTCTTA
685317 ATTAAAATATTATTTTTT
1 ATTAAAATATTATTTTTT
*
685335 ATAAGAAATATTAATTTTATT
1 ATTA-AAATATT-ATTTT-TT
*
685356 ATCTAAAATGAATATTTTT
1 AT-TAAAAT-ATTATTTTT
685375 GATATTAATA
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
18 3 0.09
19 7 0.22
20 6 0.19
21 13 0.41
22 3 0.09
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (18 bp):
ATTAAAATATTATTTTTT
Found at i:685788 original size:21 final size:21
Alignment explanation
Indices: 685737--685789 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
685727 ATTATGACTA
685737 TCGCAATGCGATTTTACAATT
1 TCGCAATGCGATTTTACAATT
** *
685758 TCGCGTTGCGATTTTCCCAA-T
1 TCGCAATGCGATTTT-ACAATT
685779 TCGCAATGCGA
1 TCGCAATGCGA
685790 CTAAGTAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 23 0.88
22 3 0.12
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.34
Consensus pattern (21 bp):
TCGCAATGCGATTTTACAATT
Found at i:685843 original size:41 final size:41
Alignment explanation
Indices: 685816--685933 Score: 218
Period size: 41 Copynumber: 2.9 Consensus size: 41
685806 GCGAATTTGG
685816 AAAATCGCAATGCGATACTGACTATCGCAACGCGATAATAC
1 AAAATCGCAATGCGATACTGACTATCGCAACGCGATAATAC
685857 AAAATCGCAATGCGATACTGACTATCGCAACGCGATAATAC
1 AAAATCGCAATGCGATACTGACTATCGCAACGCGATAATAC
* *
685898 AAAATCGCAACGCGATACTGACTTTCGCAACGCGAT
1 AAAATCGCAATGCGATACTGACTATCGCAACGCGAT
685934 TCTAACTTTC
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 75 1.00
ACGTcount: A:0.37, C:0.25, G:0.18, T:0.19
Consensus pattern (41 bp):
AAAATCGCAATGCGATACTGACTATCGCAACGCGATAATAC
Found at i:685844 original size:20 final size:20
Alignment explanation
Indices: 685819--685969 Score: 144
Period size: 20 Copynumber: 7.5 Consensus size: 20
685809 AATTTGGAAA
*
685819 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
685839 ATCGCAACGCGATAAT-ACAAA
1 ATCGCAACGCGATACTGAC--T
*
685860 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
685880 ATCGCAACGCGATAAT-ACAAA
1 ATCGCAACGCGATACTGAC--T
685901 ATCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* * *
685921 TTCGCAACGCGATTCTAACT
1 ATCGCAACGCGATACTGACT
* *
685941 TTCGCAACGCGATTCTGACT
1 ATCGCAACGCGATACTGACT
*
685961 TTCGCAACG
1 ATCGCAACG
685970 AGATTCTGAA
Statistics
Matches: 110, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
19 4 0.04
20 73 0.66
21 29 0.26
22 4 0.04
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:685865 original size:21 final size:21
Alignment explanation
Indices: 685839--685914 Score: 102
Period size: 21 Copynumber: 3.7 Consensus size: 21
685829 GATACTGACT
685839 ATCGCAACGCGATAATACAAA
1 ATCGCAACGCGATAATACAAA
* * *
685860 ATCGCAATGCGATACTGAC--T
1 ATCGCAACGCGATAAT-ACAAA
685880 ATCGCAACGCGATAATACAAA
1 ATCGCAACGCGATAATACAAA
685901 ATCGCAACGCGATA
1 ATCGCAACGCGATA
685915 CTGACTTTCG
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
19 2 0.04
20 14 0.30
21 28 0.61
22 2 0.04
ACGTcount: A:0.41, C:0.25, G:0.17, T:0.17
Consensus pattern (21 bp):
ATCGCAACGCGATAATACAAA
Found at i:685893 original size:61 final size:60
Alignment explanation
Indices: 685819--685987 Score: 144
Period size: 61 Copynumber: 2.8 Consensus size: 60
685809 AATTTGGAAA
* * *
685819 ATCGCAATGCGATACTGACTATCGCAACGCGATAAT-ACAAAATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACTATCGCAACGCGATAATGAC--AATCGCAACGCGATACTAACT
* * * ** *
685880 ATCGCAACGCGATAAT-ACAAAATCGCAACGCGATACTGACTTTCGCAACGCGATTCTAACT
1 ATCGCAACGCGATACTGAC--TATCGCAACGCGATAATGACAATCGCAACGCGATACTAACT
* * * * ** *
685941 TTCGCAACGCGATTCTGACTTTCGCAACGAGATTCTGAAAATCGCAA
1 ATCGCAACGCGATACTGACTATCGCAACGCGATAATGACAATCGCAA
685988 TCATCTTCAA
Statistics
Matches: 85, Mismatches: 19, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
60 23 0.27
61 43 0.51
62 17 0.20
63 2 0.02
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (60 bp):
ATCGCAACGCGATACTGACTATCGCAACGCGATAATGACAATCGCAACGCGATACTAACT
Found at i:685974 original size:20 final size:20
Alignment explanation
Indices: 685902--685978 Score: 127
Period size: 20 Copynumber: 3.9 Consensus size: 20
685892 TAATACAAAA
*
685902 TCGCAACGCGATACTGACTT
1 TCGCAACGCGATTCTGACTT
*
685922 TCGCAACGCGATTCTAACTT
1 TCGCAACGCGATTCTGACTT
685942 TCGCAACGCGATTCTGACTT
1 TCGCAACGCGATTCTGACTT
*
685962 TCGCAACGAGATTCTGA
1 TCGCAACGCGATTCTGA
685979 AAATCGCAAT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 53 1.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (20 bp):
TCGCAACGCGATTCTGACTT
Found at i:685985 original size:20 final size:20
Alignment explanation
Indices: 685942--685987 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
685932 ATTCTAACTT
* ***
685942 TCGCAACGCGATTCTGACTT
1 TCGCAACGAGATTCTGAAAA
685962 TCGCAACGAGATTCTGAAAA
1 TCGCAACGAGATTCTGAAAA
685982 TCGCAA
1 TCGCAA
685988 TCATCTTCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (20 bp):
TCGCAACGAGATTCTGAAAA
Found at i:685987 original size:40 final size:41
Alignment explanation
Indices: 685816--685969 Score: 211
Period size: 41 Copynumber: 3.8 Consensus size: 41
685806 GCGAATTTGG
*
685816 AAAATCGCAATGCGATACTGACTATCGCAACGCGATAATAC
1 AAAATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
*
685857 AAAATCGCAATGCGATACTGACTATCGCAACGCGATAATAC
1 AAAATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
* **
685898 AAAATCGCAACGCGATACTGACTTTCGCAACGCGATTCTA-
1 AAAATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
*** * *
685938 ACTTTCGCAACGCGATTCTGACTTTCGCAACG
1 AAAATCGCAACGCGATACTGACTATCGCAACG
685970 AGATTCTGAA
Statistics
Matches: 105, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
40 28 0.27
41 77 0.73
ACGTcount: A:0.34, C:0.27, G:0.18, T:0.22
Consensus pattern (41 bp):
AAAATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
Found at i:686227 original size:20 final size:20
Alignment explanation
Indices: 686202--686257 Score: 94
Period size: 20 Copynumber: 2.8 Consensus size: 20
686192 CAACGGGGAA
686202 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
*
686222 ATCGCAACGCGAAAATGTCT
1 ATCGCAACGCGAAAATGACT
*
686242 ATCGCAACGAGAAAAT
1 ATCGCAACGCGAAAAT
686258 CGCAATGCGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.41, C:0.23, G:0.20, T:0.16
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Found at i:686319 original size:34 final size:34
Alignment explanation
Indices: 686276--686355 Score: 108
Period size: 34 Copynumber: 2.4 Consensus size: 34
686266 GAAATGAAAA
* *
686276 TCGCATTGCGATTTTCTCGTTGCGATAGCCAT-TT
1 TCGCGTTGCGATTCTCTCGTTGCGATAGCC-TGTT
*
686310 TCGCGTTGCGATTCTCTCGTTGCGATAGTCTGTT
1 TCGCGTTGCGATTCTCTCGTTGCGATAGCCTGTT
*
686344 TCGTGTTGCGAT
1 TCGCGTTGCGAT
686356 AGTCTGTTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
33 1 0.02
34 40 0.98
ACGTcount: A:0.11, C:0.23, G:0.25, T:0.41
Consensus pattern (34 bp):
TCGCGTTGCGATTCTCTCGTTGCGATAGCCTGTT
Found at i:687947 original size:40 final size:42
Alignment explanation
Indices: 687903--687993 Score: 141
Period size: 42 Copynumber: 2.2 Consensus size: 42
687893 CCTCTTCAAT
*
687903 GATGACAGTGGCCTCTTGAACG-GTGG-GGGGACTCTTGAGG
1 GATGACAGGGGCCTCTTGAACGAGTGGAGGGGACTCTTGAGG
* *
687943 GATGATAGGGGCCTCTTGAACGATTGGAGGGGACTCTTGAGG
1 GATGACAGGGGCCTCTTGAACGAGTGGAGGGGACTCTTGAGG
687985 GATGACAGG
1 GATGACAGG
687994 TGAGTCGGGC
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
40 20 0.44
41 3 0.07
42 22 0.49
ACGTcount: A:0.21, C:0.15, G:0.42, T:0.22
Consensus pattern (42 bp):
GATGACAGGGGCCTCTTGAACGAGTGGAGGGGACTCTTGAGG
Found at i:687958 original size:21 final size:21
Alignment explanation
Indices: 687929--687989 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 21
687919 TGAACGGTGG
*
687929 GGGGACTCTTGAGGGATGATA
1 GGGGACTCTTGAGGGATGAGA
* **
687950 GGGGCCTCTTGAACGATTG-GA
1 GGGGACTCTTGAGGGA-TGAGA
687971 GGGGACTCTTGAGGGATGA
1 GGGGACTCTTGAGGGATGA
687990 CAGGTGAGTC
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
20 2 0.06
21 27 0.87
22 2 0.06
ACGTcount: A:0.21, C:0.13, G:0.43, T:0.23
Consensus pattern (21 bp):
GGGGACTCTTGAGGGATGAGA
Found at i:688405 original size:20 final size:20
Alignment explanation
Indices: 688355--688410 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
688345 AAACTTACTT
**
688355 TCGCAACGCAAAAATGACTA
1 TCGCAACGCGGAAATGACTA
*
688375 TCGCAACGCGGAAATGGCTA
1 TCGCAACGCGGAAATGACTA
*
688395 TCGCAATGCGGAAATG
1 TCGCAACGCGGAAATG
688411 CGATTTTCAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.36, C:0.23, G:0.25, T:0.16
Consensus pattern (20 bp):
TCGCAACGCGGAAATGACTA
Found at i:688433 original size:19 final size:18
Alignment explanation
Indices: 688409--688469 Score: 58
Period size: 19 Copynumber: 3.5 Consensus size: 18
688399 AATGCGGAAA
688409 TGCGATTTTCATTTCACGT
1 TGCGATTTTCATTTC-CGT
*
688428 TGCGA-TTT--TGT-CGT
1 TGCGATTTTCATTTCCGT
*
688442 TGCGATTTTCATTTCGCAT
1 TGCGATTTTCATTTC-CGT
688461 TGCGATTTT
1 TGCGATTTT
688470 GTCGTTGCGA
Statistics
Matches: 34, Mismatches: 3, Indels: 10
0.72 0.06 0.21
Matches are distributed among these distances:
14 8 0.24
15 3 0.09
16 2 0.06
17 2 0.06
18 3 0.09
19 16 0.47
ACGTcount: A:0.13, C:0.18, G:0.20, T:0.49
Consensus pattern (18 bp):
TGCGATTTTCATTTCCGT
Found at i:688444 original size:14 final size:14
Alignment explanation
Indices: 688425--688483 Score: 64
Period size: 14 Copynumber: 3.9 Consensus size: 14
688415 TTTCATTTCA
688425 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
688439 CGTTGCGATTTTCATTT
1 CGTTGCGA-TTT--TGT
688456 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
688472 CGTTGCGATTTT
1 CGTTGCGATTTT
688484 TATTTCGCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
14 18 0.47
15 3 0.08
16 4 0.11
17 4 0.11
18 3 0.08
19 6 0.16
ACGTcount: A:0.10, C:0.17, G:0.24, T:0.49
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:688451 original size:33 final size:33
Alignment explanation
Indices: 688409--688499 Score: 155
Period size: 33 Copynumber: 2.8 Consensus size: 33
688399 AATGCGGAAA
* *
688409 TGCGATTTTCATTTCACGTTGCGATTTTGTCGT
1 TGCGATTTTCATTTCGCATTGCGATTTTGTCGT
688442 TGCGATTTTCATTTCGCATTGCGATTTTGTCGT
1 TGCGATTTTCATTTCGCATTGCGATTTTGTCGT
*
688475 TGCGATTTTTATTTCGCATTGCGAT
1 TGCGATTTTCATTTCGCATTGCGAT
688500 AGCCATTTTC
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 55 1.00
ACGTcount: A:0.13, C:0.18, G:0.21, T:0.48
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCATTGCGATTTTGTCGT
Found at i:688498 original size:19 final size:19
Alignment explanation
Indices: 688441--688499 Score: 65
Period size: 19 Copynumber: 3.4 Consensus size: 19
688431 GATTTTGTCG
*
688441 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTTATTTCGCA
*
688460 TTGCGA--TTT-TGTCG--
1 TTGCGATTTTTATTTCGCA
688474 TTGCGATTTTTATTTCGCA
1 TTGCGATTTTTATTTCGCA
688493 TTGCGAT
1 TTGCGAT
688500 AGCCATTTTC
Statistics
Matches: 32, Mismatches: 3, Indels: 10
0.71 0.07 0.22
Matches are distributed among these distances:
14 6 0.19
16 7 0.22
17 6 0.19
19 13 0.41
ACGTcount: A:0.14, C:0.17, G:0.20, T:0.49
Consensus pattern (19 bp):
TTGCGATTTTTATTTCGCA
Found at i:688558 original size:20 final size:20
Alignment explanation
Indices: 688486--688550 Score: 121
Period size: 20 Copynumber: 3.2 Consensus size: 20
688476 GCGATTTTTA
688486 TTTCGCATTGCGATAGCCAT
1 TTTCGCATTGCGATAGCCAT
688506 TTTCGCATTGCGATAGCCAT
1 TTTCGCATTGCGATAGCCAT
*
688526 TTTCGCATTGCGATAGTCAT
1 TTTCGCATTGCGATAGCCAT
688546 TTTCG
1 TTTCG
688551 TGTTGCGAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.18, C:0.23, G:0.20, T:0.38
Consensus pattern (20 bp):
TTTCGCATTGCGATAGCCAT
Found at i:689098 original size:18 final size:18
Alignment explanation
Indices: 689075--689122 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
689065 CGGGTCGATC
689075 AGGTGATGGCTCTGGGTG
1 AGGTGATGGCTCTGGGTG
*
689093 AGGTGATAGCTCTGGGTG
1 AGGTGATGGCTCTGGGTG
689111 AGGTGATGGCTC
1 AGGTGATGGCTC
689123 CCGAAGTGGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.15, C:0.12, G:0.46, T:0.27
Consensus pattern (18 bp):
AGGTGATGGCTCTGGGTG
Found at i:690490 original size:20 final size:20
Alignment explanation
Indices: 690442--690500 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
690432 AATAGTTTCT
* *
690442 GAAAATGAAAATCGCAACAC
1 GAAAATGACAATCGCAACGC
690462 GAAAATGACAATCGCAACGC
1 GAAAATGACAATCGCAACGC
** *
690482 GAATTTGACTATCGCAACG
1 GAAAATGACAATCGCAACG
690501 AGAGAATAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.44, C:0.22, G:0.19, T:0.15
Consensus pattern (20 bp):
GAAAATGACAATCGCAACGC
Found at i:690790 original size:22 final size:22
Alignment explanation
Indices: 690763--690806 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
690753 GATGGAGATA
690763 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
*
690785 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
690807 TGAGAGAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.16, G:0.45, T:0.20
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:691021 original size:20 final size:20
Alignment explanation
Indices: 690993--691065 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
690983 GATTATGTAT
* *
690993 TATCTCGTTGCGAAAGTAAG
1 TATCGCGTTGCGAAAGTCAG
691013 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
* * *
691033 TATCGCATTGCGATAGCCAG
1 TATCGCGTTGCGAAAGTCAG
691053 TATCGCGTTGCGA
1 TATCGCGTTGCGA
691066 TTTTCCAAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (20 bp):
TATCGCGTTGCGAAAGTCAG
Found at i:691128 original size:21 final size:22
Alignment explanation
Indices: 691078--691128 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
691068 TTCCAAATTT
691078 GCATTGCG-AATTGGGAAAATC
1 GCATTGCGAAATTGGGAAAATC
**
691099 GCAACGCGAAATT-GGAAAATC
1 GCATTGCGAAATTGGGAAAATC
691120 GCATTGCGA
1 GCATTGCGA
691129 TAGTCATAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 21 0.84
22 4 0.16
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (22 bp):
GCATTGCGAAATTGGGAAAATC
Found at i:708037 original size:3 final size:3
Alignment explanation
Indices: 708029--708064 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
708019 TGTTTTGATA
708029 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
708065 TTTGATACAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:712515 original size:4 final size:4
Alignment explanation
Indices: 712506--712854 Score: 617
Period size: 4 Copynumber: 87.2 Consensus size: 4
712496 TGTTGTAGAA
* * *
712506 GTAT GTAT GTAT GTAT GCAT GCAT GCAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
712554 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
712602 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* * * * * *
712650 GTAT GTAT GTAT GTAT GTAC GTAC GTAC GTAC GTAC GTAC GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
712698 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
712746 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
712794 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
712842 GTAT GTAT GTAT G
1 GTAT GTAT GTAT G
712855 CTTTCAAAGA
Statistics
Matches: 341, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
4 341 1.00
ACGTcount: A:0.25, C:0.03, G:0.25, T:0.47
Consensus pattern (4 bp):
GTAT
Found at i:715534 original size:3 final size:3
Alignment explanation
Indices: 715526--715554 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
715516 TAACAAAAAC
715526 AGA AGA AGA AGA AGA AGA AGA AGA AGA AG
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AG
715555 GGAGGATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:716422 original size:15 final size:15
Alignment explanation
Indices: 716404--716434 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
716394 AAATTCTAAA
716404 TATTTAAATAAAAAT
1 TATTTAAATAAAAAT
*
716419 TATTTACATAAAAAT
1 TATTTAAATAAAAAT
716434 T
1 T
716435 CTATTTGTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (15 bp):
TATTTAAATAAAAAT
Found at i:716677 original size:25 final size:25
Alignment explanation
Indices: 716632--716685 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
716622 TTGTTATCTA
*
716632 ATATATAATATTTATTATATCTTCT
1 ATATACAATATTTATTATATCTTCT
*
716657 ATATACAATGATTTATT-TATCTTTT
1 ATATACAAT-ATTTATTATATCTTCT
716682 ATAT
1 ATAT
716686 TTATACTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 19 0.73
26 7 0.27
ACGTcount: A:0.35, C:0.07, G:0.02, T:0.56
Consensus pattern (25 bp):
ATATACAATATTTATTATATCTTCT
Found at i:723765 original size:21 final size:21
Alignment explanation
Indices: 723716--723791 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
723706 CGATTTTCCC
** *
723716 AATTCGCAATGCGAATAAGTA
1 AATTCGCAATGCGAATTGGGA
*
723737 AA-TCGCAACGCGAATTGGGA
1 AATTCGCAATGCGAATTGGGA
723757 AATTCGCAATGCGAATTGGGA
1 AATTCGCAATGCGAATTGGGA
*
723778 AAATCGCAATGCGA
1 AATTCGCAATGCGA
723792 CACTGACTAT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
20 16 0.33
21 32 0.67
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.20
Consensus pattern (21 bp):
AATTCGCAATGCGAATTGGGA
Found at i:723847 original size:20 final size:21
Alignment explanation
Indices: 723822--723873 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 21
723812 TAATAAAAAA
*
723822 TCGCAACGA-GATACTTACTT
1 TCGCAACGACGATACTGACTT
723842 TCGCAAC-ACGATACTGACTT
1 TCGCAACGACGATACTGACTT
723862 TCGCAACG-CGAT
1 TCGCAACGACGAT
723874 TTACTTAGCG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 1 0.03
20 28 0.97
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (21 bp):
TCGCAACGACGATACTGACTT
Found at i:723854 original size:41 final size:41
Alignment explanation
Indices: 723777--723854 Score: 93
Period size: 41 Copynumber: 1.9 Consensus size: 41
723767 GCGAATTGGG
* * **
723777 AAAATCGCAATGCGACACTGACTATCGCAATGCGATAATAA
1 AAAATCGCAACGAGACACTGACTATCGCAACACGATAATAA
* * *
723818 AAAATCGCAACGAGATACTTACTTTCGCAACACGATA
1 AAAATCGCAACGAGACACTGACTATCGCAACACGATA
723855 CTGACTTTCG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
41 30 1.00
ACGTcount: A:0.41, C:0.23, G:0.15, T:0.21
Consensus pattern (41 bp):
AAAATCGCAACGAGACACTGACTATCGCAACACGATAATAA
Found at i:724439 original size:19 final size:19
Alignment explanation
Indices: 724417--724460 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
724407 GGAAATGACT
*
724417 ATCGCAACGAGAAATAAAA
1 ATCGCAACGAGAAACAAAA
* *
724436 ATCGCAACGCGAAACCAAA
1 ATCGCAACGAGAAACAAAA
724455 ATCGCA
1 ATCGCA
724461 TTGCGATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.50, C:0.25, G:0.16, T:0.09
Consensus pattern (19 bp):
ATCGCAACGAGAAACAAAA
Found at i:724478 original size:19 final size:19
Alignment explanation
Indices: 724456--724659 Score: 221
Period size: 19 Copynumber: 11.1 Consensus size: 19
724446 GAAACCAAAA
*
724456 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
724475 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
724494 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
724513 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
724532 TCGCGGTTGCGATTTTCATT
1 TCGC-GTTGCGATTTTCATT
*
724552 TCGCGTTGCGATTGTC---
1 TCGCGTTGCGATTTTCATT
* **
724568 T-G-GTCGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
724585 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* **
724599 TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
*
724618 TCCGCGTTGCGATTCTCATT
1 T-CGCGTTGCGATTTTCATT
*
724638 ATCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
724658 TC
1 TC
724660 AACCAAAAGA
Statistics
Matches: 159, Mismatches: 13, Indels: 26
0.80 0.07 0.13
Matches are distributed among these distances:
14 20 0.13
15 1 0.01
16 3 0.02
17 3 0.02
18 1 0.01
19 80 0.50
20 50 0.31
21 1 0.01
ACGTcount: A:0.12, C:0.23, G:0.22, T:0.44
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:724584 original size:33 final size:33
Alignment explanation
Indices: 724547--724634 Score: 140
Period size: 33 Copynumber: 2.6 Consensus size: 33
724537 GTTGCGATTT
* *
724547 TCATTTCGCGTTGCGATTGTCTGGTCGCGATAG
1 TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
*
724580 TCATTTCGCGTTGCGATTCTCTCGTTGCGATAG
1 TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
724613 TCATTTCCGCGTTGCGATTCTC
1 TCATTT-CGCGTTGCGATTCTC
724635 ATTATCTCGT
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
33 36 0.71
34 15 0.29
ACGTcount: A:0.11, C:0.25, G:0.25, T:0.39
Consensus pattern (33 bp):
TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
Found at i:724636 original size:20 final size:20
Alignment explanation
Indices: 724602--724659 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
724592 GCGATTCTCT
**
724602 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATTCTCATTTCCG
*
724622 CGTTGCGATTCTCATTAT-CT
1 CGTTGCGATTCTCATT-TCCG
*
724642 CGTTGCGATTTTCATTTC
1 CGTTGCGATTCTCATTTC
724660 AACCAAAAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
19 1 0.03
20 30 0.94
21 1 0.03
ACGTcount: A:0.14, C:0.24, G:0.19, T:0.43
Consensus pattern (20 bp):
CGTTGCGATTCTCATTTCCG
Found at i:726721 original size:42 final size:42
Alignment explanation
Indices: 726661--726783 Score: 122
Period size: 42 Copynumber: 2.9 Consensus size: 42
726651 GCTCGACTCG
* * *
726661 CCTATCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCC
1 CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
* * *
726703 CCTATCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCC
1 CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
* * ** * *
726745 ACTGTCATCGTTGAAGAGGTCC-CTCCCACCATTCAAGAG
1 CCTATCATCCCTCAAGA-GTCCACTCCCACCGTTCAAGAG
726784 CCCGATTCAC
Statistics
Matches: 66, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
42 62 0.94
43 4 0.06
ACGTcount: A:0.23, C:0.37, G:0.18, T:0.23
Consensus pattern (42 bp):
CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
Found at i:726741 original size:21 final size:21
Alignment explanation
Indices: 726717--726783 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
726707 TCATTCCTCG
726717 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
726738 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
726759 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
726780 AGAG
1 AGAG
726784 CCCGATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:728161 original size:14 final size:14
Alignment explanation
Indices: 728142--728177 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
728132 ATTGTTTAAT
728142 TGATTTGTAAAAGG
1 TGATTTGTAAAAGG
*
728156 TGATTTGTAAAAGT
1 TGATTTGTAAAAGG
728170 TGATTTGT
1 TGATTTGT
728178 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGG
Found at i:728378 original size:19 final size:19
Alignment explanation
Indices: 728356--728473 Score: 76
Period size: 19 Copynumber: 6.7 Consensus size: 19
728346 CGAAATTAAA
728356 TTCGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
728375 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
* *
728390 -CCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
728408 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
*
728423 -TCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* ** *
728441 TTCGCATTGCGATAGTAAT
1 TTCGCGTTGCGATTTTCAT
728460 TTCCGCGTTGCGAT
1 TT-CGCGTTGCGAT
728474 GGTCATTAAG
Statistics
Matches: 73, Mismatches: 15, Indels: 21
0.67 0.14 0.19
Matches are distributed among these distances:
14 17 0.23
16 6 0.08
17 6 0.08
19 34 0.47
20 10 0.14
ACGTcount: A:0.14, C:0.24, G:0.20, T:0.42
Consensus pattern (19 bp):
TTCGCGTTGCGATTTTCAT
Found at i:728402 original size:33 final size:33
Alignment explanation
Indices: 728360--728453 Score: 179
Period size: 33 Copynumber: 2.8 Consensus size: 33
728350 ATTAAATTCG
728360 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
*
728393 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
728426 CGTTGCGATTTTCATTTCGCATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
728454 AGTAATTTCC
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 60 1.00
ACGTcount: A:0.13, C:0.24, G:0.19, T:0.44
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
Found at i:730765 original size:12 final size:12
Alignment explanation
Indices: 730748--730772 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
730738 TCTTCGGGGA
730748 CTTTTTCTTCTT
1 CTTTTTCTTCTT
730760 CTTTTTCTTCTT
1 CTTTTTCTTCTT
730772 C
1 C
730773 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:732252 original size:14 final size:15
Alignment explanation
Indices: 732233--732270 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
732223 CATCAATTAA
732233 ACAAATCAA-CATTT
1 ACAAATCAATCATTT
*
732247 ACAAAT-AATCTTTT
1 ACAAATCAATCATTT
732261 ACAAATCAAT
1 ACAAATCAAT
732271 TAAACAATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 2 0.10
14 16 0.76
15 3 0.14
ACGTcount: A:0.50, C:0.18, G:0.00, T:0.32
Consensus pattern (15 bp):
ACAAATCAATCATTT
Found at i:732656 original size:20 final size:20
Alignment explanation
Indices: 732631--732681 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
732621 ATTCATTTGA
*
732631 CTATCGCAACGTGAAAATGG
1 CTATCGCAACGCGAAAATGG
732651 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
*
732671 TTATCGCAACG
1 CTATCGCAACG
732682 AGAATATCGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.33, C:0.24, G:0.24, T:0.20
Consensus pattern (20 bp):
CTATCGCAACGCGAAAATGG
Found at i:732731 original size:14 final size:14
Alignment explanation
Indices: 732712--732765 Score: 63
Period size: 14 Copynumber: 3.5 Consensus size: 14
732702 GAAAATCGCA
732712 TTGCGATTTTCTCG
1 TTGCGATTTTCTCG
732726 TTGCGATTTTCATTTCG
1 TTGCGATTTTC---TCG
732743 CATTGCGATTTTCTCG
1 --TTGCGATTTTCTCG
732759 TTGCGAT
1 TTGCGAT
732766 AGCCATTTCG
Statistics
Matches: 35, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
14 18 0.51
16 3 0.09
17 3 0.09
19 11 0.31
ACGTcount: A:0.11, C:0.20, G:0.20, T:0.48
Consensus pattern (14 bp):
TTGCGATTTTCTCG
Found at i:732749 original size:33 final size:33
Alignment explanation
Indices: 732707--732784 Score: 120
Period size: 33 Copynumber: 2.4 Consensus size: 33
732697 GAAATGAAAA
***
732707 TCGCATTGCGATTTTCTCGTTGCGATTTTCATT
1 TCGCATTGCGATTTTCTCGTTGCGATAGCCATT
732740 TCGCATTGCGATTTTCTCGTTGCGATAGCCATT
1 TCGCATTGCGATTTTCTCGTTGCGATAGCCATT
*
732773 TCGCGTTGCGAT
1 TCGCATTGCGAT
732785 AGTCTGTTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.13, C:0.23, G:0.22, T:0.42
Consensus pattern (33 bp):
TCGCATTGCGATTTTCTCGTTGCGATAGCCATT
Found at i:732891 original size:14 final size:14
Alignment explanation
Indices: 732872--732908 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
732862 CATCAATTAA
732872 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
732886 ACAAATCATCTTTT
1 ACAAATCAACATTT
732900 ACAAATCAA
1 ACAAATCAA
732909 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:734812 original size:20 final size:19
Alignment explanation
Indices: 734772--734838 Score: 82
Period size: 19 Copynumber: 3.5 Consensus size: 19
734762 GAAACTTAAA
734772 ATCGCAACGCGAAATGACT
1 ATCGCAACGCGAAATGACT
734791 ATCGCAACGCGGAAAT-AGCT
1 ATCGCAACGC-GAAATGA-CT
* **
734811 ATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGACT
734830 ATCGCAACG
1 ATCGCAACG
734839 ACAAAATCGC
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
19 24 0.59
20 17 0.41
ACGTcount: A:0.39, C:0.24, G:0.22, T:0.15
Consensus pattern (19 bp):
ATCGCAACGCGAAATGACT
Found at i:734846 original size:14 final size:14
Alignment explanation
Indices: 734827--734884 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
734817 ATGCGAAATG
734827 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
734841 AAAATCGCAACGCGAA
1 AAAATCGCAA--CGAC
734857 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
734873 AAAATCGCAACG
1 AAAATCGCAACG
734885 CGAAACACAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 21 0.55
16 8 0.21
18 9 0.24
ACGTcount: A:0.48, C:0.26, G:0.17, T:0.09
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:734869 original size:32 final size:33
Alignment explanation
Indices: 734811--734889 Score: 142
Period size: 32 Copynumber: 2.4 Consensus size: 33
734801 GGAAATAGCT
*
734811 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
734844 ATCGCAACGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
734876 ATCGCAACGCGAAA
1 ATCGCAACGCGAAA
734890 CACAAATCGC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
32 30 0.67
33 15 0.33
ACGTcount: A:0.47, C:0.24, G:0.19, T:0.10
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAACGACAAA
Found at i:734918 original size:19 final size:17
Alignment explanation
Indices: 734896--734991 Score: 78
Period size: 19 Copynumber: 5.6 Consensus size: 17
734886 GAAACACAAA
734896 TCGCATTGCGATTTTCATT
1 TCGC-TTGCGA-TTTCATT
*
734915 TCGCGTTGCGATTT--TG
1 TCGC-TTGCGATTTCATT
734931 TCG-TTGCGATTTCATT
1 TCGCTTGCGATTTCATT
*
734947 TCGCGTTGCGATTT--TG
1 TCGC-TTGCGATTTCATT
734963 TCG-TTGCGATTTTCATT
1 TCGCTTGCGA-TTTCATT
734980 TCGCATTGCGAT
1 TCGC-TTGCGAT
734992 AGCCATTTCC
Statistics
Matches: 63, Mismatches: 5, Indels: 19
0.72 0.06 0.22
Matches are distributed among these distances:
14 15 0.24
15 3 0.05
16 12 0.19
17 4 0.06
18 13 0.21
19 16 0.25
ACGTcount: A:0.11, C:0.20, G:0.23, T:0.46
Consensus pattern (17 bp):
TCGCTTGCGATTTCATT
Found at i:734937 original size:14 final size:14
Alignment explanation
Indices: 734918--734975 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
734908 TTTCATTTCG
734918 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
734932 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
734948 CGCGTTGCGATTTTGT
1 --CGTTGCGATTTTGT
734964 CGTTGCGATTTT
1 CGTTGCGATTTT
734976 CATTTCGCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 23 0.61
16 4 0.11
18 11 0.29
ACGTcount: A:0.09, C:0.17, G:0.26, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:734982 original size:33 final size:33
Alignment explanation
Indices: 734901--734991 Score: 166
Period size: 32 Copynumber: 2.8 Consensus size: 33
734891 ACAAATCGCA
734901 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
734934 TTGCGA-TTTCATTTCGCGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
*
734966 TTGCGATTTTCATTTCGCATTGCGAT
1 TTGCGATTTTCATTTCGCGTTGCGAT
734992 AGCCATTTCC
Statistics
Matches: 56, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
32 32 0.57
33 24 0.43
ACGTcount: A:0.11, C:0.19, G:0.23, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
Found at i:735010 original size:20 final size:19
Alignment explanation
Indices: 734976--735030 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
734966 TTGCGATTTT
*
734976 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
734995 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
735015 CATTTTCGTGTTGCGA
1 CA-TTTCGCGTTGCGA
735031 AAGTAAACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.16
20 23 0.74
21 3 0.10
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:735527 original size:18 final size:18
Alignment explanation
Indices: 735501--735545 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
735491 GTCGATCAGA
*
735501 TGATGGCTCTAGGTGAGG
1 TGATGGCTCTAGGCGAGG
* *
735519 TGATAGCTCTGGGCGAGG
1 TGATGGCTCTAGGCGAGG
735537 TGATGGCTC
1 TGATGGCTC
735546 CCGAAGTGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.16, C:0.16, G:0.42, T:0.27
Consensus pattern (18 bp):
TGATGGCTCTAGGCGAGG
Found at i:736880 original size:20 final size:20
Alignment explanation
Indices: 736855--736892 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
736845 AATAGTTTCT
736855 GAAAATGAAAATCGCAACAC
1 GAAAATGAAAATCGCAACAC
**
736875 GAAAATGACTATCGCAAC
1 GAAAATGAAAATCGCAAC
736893 GAGAGAATCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.21, G:0.16, T:0.13
Consensus pattern (20 bp):
GAAAATGAAAATCGCAACAC
Found at i:737178 original size:22 final size:22
Alignment explanation
Indices: 737153--737196 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
737143 GATTTAGATA
737153 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
*
737175 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
737197 TGAGAGAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.16, G:0.45, T:0.20
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:737409 original size:20 final size:20
Alignment explanation
Indices: 737384--737477 Score: 89
Period size: 20 Copynumber: 4.7 Consensus size: 20
737374 GATTATGTAT
737384 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
737404 TATCGCGTTGCGAAAGTAAG
1 TATCGCGTTGCGAAAGTCAG
* *** * *
737424 TATCTCGTTGCGATTTTTTAT
1 TATCGCGTTGCGA-AAGTCAG
* *
737445 TATCGCATTGCGATAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
737465 TATCGCATTGCGA
1 TATCGCGTTGCGA
737478 TTTTCCCAAT
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 47 0.78
21 13 0.22
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.34
Consensus pattern (20 bp):
TATCGCGTTGCGAAAGTCAG
Found at i:737478 original size:20 final size:20
Alignment explanation
Indices: 737364--737478 Score: 88
Period size: 20 Copynumber: 5.7 Consensus size: 20
737354 CGCTTTGAAA
*
737364 ATCGCATTGCGATTATGT-ATT
1 ATCGCATTGCGA-TA-GTCAGT
* *
737385 ATCGCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATAGTCAGT
* * *
737405 ATCGCGTTGCGAAAGTAAGT
1 ATCGCATTGCGATAGTCAGT
* * ** * *
737425 ATCTCGTTGCGATTTTTTATT
1 ATCGCATTGCGA-TAGTCAGT
737446 ATCGCATTGCGATAGTCAGT
1 ATCGCATTGCGATAGTCAGT
737466 ATCGCATTGCGAT
1 ATCGCATTGCGAT
737479 TTTCCCAATT
Statistics
Matches: 76, Mismatches: 16, Indels: 5
0.78 0.16 0.05
Matches are distributed among these distances:
19 2 0.03
20 50 0.66
21 24 0.32
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.36
Consensus pattern (20 bp):
ATCGCATTGCGATAGTCAGT
Found at i:737497 original size:41 final size:41
Alignment explanation
Indices: 737406--737540 Score: 130
Period size: 41 Copynumber: 3.3 Consensus size: 41
737396 AAAGTCAGTA
* * * ** *
737406 TCGCGTTGCGAAAGTAAGTATCTCGTTGCGATTTT-TTATT
1 TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* *
737446 ATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCCAAT
1 -TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* ** *
737488 TCGCGTTGCGAT-TTACTTATTCGCATTGCGAATTTCCCAAT
1 TCGCGTTGCGATAGTAAGTA-TCGCATTGCGATTTTCCCAAT
737529 TCGCGTTGCGAT
1 TCGCGTTGCGAT
737541 TTACTTATTC
Statistics
Matches: 78, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
40 3 0.04
41 73 0.94
42 2 0.03
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (41 bp):
TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
Found at i:737511 original size:20 final size:20
Alignment explanation
Indices: 737467--737559 Score: 96
Period size: 20 Copynumber: 4.5 Consensus size: 20
737457 ATAGTCAGTA
* **
737467 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGA-TTTACTTAT
*
737488 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTTAT
* **
737508 TCGCATTGCGAATTTCCCAAT
1 TCGCATTGCG-ATTTACTTAT
*
737529 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTTAT
737549 TCGCATTGCGA
1 TCGCATTGCGA
737560 ATTGGGAAAA
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 32 0.55
21 26 0.45
ACGTcount: A:0.18, C:0.25, G:0.18, T:0.39
Consensus pattern (20 bp):
TCGCATTGCGATTTACTTAT
Found at i:737541 original size:41 final size:41
Alignment explanation
Indices: 737467--737562 Score: 183
Period size: 41 Copynumber: 2.3 Consensus size: 41
737457 ATAGTCAGTA
*
737467 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTTACTTAT
737508 TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTTACTTAT
737549 TCGCATTGCGAATT
1 TCGCATTGCGAATT
737563 GGGAAAATCG
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.19, C:0.24, G:0.18, T:0.40
Consensus pattern (41 bp):
TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTTACTTAT
Found at i:741727 original size:60 final size:61
Alignment explanation
Indices: 741592--741727 Score: 145
Period size: 60 Copynumber: 2.3 Consensus size: 61
741582 ACGTATTACA
* * * * * * *
741592 CATCCTCAAACTATGACGCTTATTCTAAATTAGTCTCTTAACTTTTGAGCATTCTAATTTT
1 CATCCTCAAACTATGACCCATATTCTAAATTAGTCTCTAAACTTTTGAACACTCCAATGTT
*
741653 C-TCCCCAAACTATGACTCCAT-TTCTAAATTAGT-TCCTAAACTTTTGAACACTCCAA-GTT
1 CATCCTCAAACTATGAC-CCATATTCTAAATTAGTCT-CTAAACTTTTGAACACTCCAATGTT
*
741712 CATCCTCAAATTATGA
1 CATCCTCAAACTATGA
741728 TCCTCAGTTC
Statistics
Matches: 62, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
59 4 0.06
60 55 0.89
61 3 0.05
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (61 bp):
CATCCTCAAACTATGACCCATATTCTAAATTAGTCTCTAAACTTTTGAACACTCCAATGTT
Found at i:741941 original size:59 final size:59
Alignment explanation
Indices: 741815--741943 Score: 152
Period size: 59 Copynumber: 2.2 Consensus size: 59
741805 TATTGGAATG
* * * *
741815 TTCAAAAGTTTGGGGACCAAATTAGAATAACAGTCATAGTTTGAGGATGAATTTGAAATG
1 TTCAAAA-TTTGGGGACCAAATTAGAATAAAAATCATAGTTTGAGGATGAAGTTGAAATA
* * * * *
741875 TTTAAAATTTGGGGACTAATTTAGAATAAAAATCATA-TGTTGAGGATGGAGTTGTAATA
1 TTCAAAATTTGGGGACCAAATTAGAATAAAAATCATAGT-TTGAGGATGAAGTTGAAATA
741934 TTCAAAATTT
1 TTCAAAATTT
741944 TAGAGATAAT
Statistics
Matches: 58, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
58 1 0.02
59 51 0.88
60 6 0.10
ACGTcount: A:0.39, C:0.06, G:0.21, T:0.34
Consensus pattern (59 bp):
TTCAAAATTTGGGGACCAAATTAGAATAAAAATCATAGTTTGAGGATGAAGTTGAAATA
Found at i:753743 original size:84 final size:84
Alignment explanation
Indices: 753381--754249 Score: 807
Period size: 84 Copynumber: 10.5 Consensus size: 84
753371 TTTTTTACAA
* * *
753381 CATTTACAGCATAACTCAGAG-CTAGAAGGGTTATCTGCCAACAAAGACATTCGAGTTCGACTAC
1 CATTTACAGCATAACTTA-AGTCTAGAAGGGTTATCTGTCAACAAAGACCTTCGAGTTCGACTAC
*
753445 GCTCAGC-TCTAAGG----T
65 GCTCAGCTTCGAAGGCATAT
* * * * * * * * * * *
753460 CATTTGCAGTATAGCTTAAGTCGAGAAGGGCTATATGCCATCCAAAAGGCCTTCAAGTTCGATTA
1 CATTTACAGCATAACTTAAGTCTAGAAGGGTTATCTGTCA-AC-AAAGACCTTCGAGTTCGACTA
* *
753525 CACTCAGCTTCGAGGGCATAT
64 CGCTCAGCTTCGAAGGCATAT
* * * * *
753546 CATTTACAGTATAACTCAAGGCTAGAAGGGTTATTTGTCACCAAAGACCTTCGAGTTCGACTACG
1 CATTTACAGCATAACTTAAGTCTAGAAGGGTTATCTGTCAACAAAGACCTTCGAGTTCGACTACG
*
753611 CTCAGC-TCCAAGGCATAT
66 CTCAGCTTCGAAGGCATAT
* * * ** * *
753629 CATTTGCAGCACAACTTAAGTCTAGAAGGGTTGTCTGTCAACAAAGACCCCCGAGTTCGATTACA
1 CATTTACAGCATAACTTAAGTCTAGAAGGGTTATCTGTCAACAAAGACCTTCGAGTTCGACTACG
*
753694 CTCAGCTTCGAAGGCACAT
66 CTCAGCTTCGAAGGCATAT
* *
753713 CATTTACAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTAC
1 CATTTACAGCATAACTTAAGTCTAGAAGGGTTATCTGTCAA-CAAAGACCTTCGAGTTCGACTAC
*
753778 GCTCAGC-TCCAAGGCATAT
65 GCTCAGCTTCGAAGGCATAT
* * * * * ** * *
753797 CATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTG-C--CAAAAACCCCCGAGTTCGATTACA
1 CATTTACAGCATAACTTAAGTCTAGAAGGGTTATCTGTCAACAAAGACCTTCGAGTTCGACTACG
*
753859 CTCAGCTTCGAGGGCATAT
66 CTCAGCTTCGAAGGCATAT
* * * * * *
753878 CATTTACAGCATAACTCAAGGCTATAAGGGTTATTTGTTACCAAAGACCTTCGAGTTCGACTACG
1 CATTTACAGCATAACTTAAGTCTAGAAGGGTTATCTGTCAACAAAGACCTTCGAGTTCGACTACG
*
753943 CTCAGC-TCCAAGGCATAT
66 CTCAGCTTCGAAGGCATAT
* * * ** * *
753961 CATTTGCAGCACAACTTAAGTCTAGAAGGGTTGTCTGTCAACAAAGACCCCCGAGTTCGATTACA
1 CATTTACAGCATAACTTAAGTCTAGAAGGGTTATCTGTCAACAAAGACCTTCGAGTTCGACTACG
* *
754026 CTCAGCTTAGAGGGCATAT
66 CTCAGCTTCGAAGGCATAT
* * * * * * *
754045 TATTTACAGTATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAATACCTTCGAGTTCGACTATG
1 CATTTACAGCATAACTTAAGTCTAGAAGGGTTATCTGTCAACAAAGACCTTCGAGTTCGACTACG
* *
754110 TTCAGCTTCGAGGGCATAT
66 CTCAGCTTCGAAGGCATAT
* * * * * * ** *
754129 CATTTGCGGTATAGCTCAAGGCTAGAAGGACTATCT-TC--CAAAGACCTTCGAGTTTGACTACG
1 CATTTACAGCATAACTTAAGTCTAGAAGGGTTATCTGTCAACAAAGACCTTCGAGTTCGACTACG
* *
754191 CTCAGC-TCTAAGGCACAT
66 CTCAGCTTCGAAGGCATAT
* * * * * * *
754209 CATTTACAACATAGCTCAAGGCAAGAAGGGCTATCTATCAA
1 CATTTACAGCATAACTTAAGTCTAGAAGGGTTATCTGTCAA
754250 TAAATTTTTC
Statistics
Matches: 641, Mismatches: 131, Indels: 32
0.80 0.16 0.04
Matches are distributed among these distances:
78 2 0.00
79 30 0.05
80 65 0.10
81 91 0.14
82 5 0.01
83 140 0.22
84 247 0.39
85 28 0.04
86 33 0.05
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (84 bp):
CATTTACAGCATAACTTAAGTCTAGAAGGGTTATCTGTCAACAAAGACCTTCGAGTTCGACTACG
CTCAGCTTCGAAGGCATAT
Found at i:753851 original size:248 final size:249
Alignment explanation
Indices: 753381--754244 Score: 924
Period size: 248 Copynumber: 3.5 Consensus size: 249
753371 TTTTTTACAA
* * *
753381 CATTTACAGCATAACTC-AGAGCTAGAAGGGTTATCTGCCAACAAAGACATTCGAGTTCGACTAC
1 CATTTGCAGCATAACTCAAG-GCTAGAAGGGTTATCTGTCAACAAAGACCTTCGAGTTCGACTAC
* * * * *
753445 GCTCAGCTCTAAGG----TCATTTGCAGTATAGCTTAAGTCGAGAAGGGCTATATGCCATCCAAA
65 GCTCAGCTCTAAGGCACATCATTTACAGCATAACTTAAGTCGAGAAGGGCTATCTGCCAACC-AA
* * * *
753506 AGGCCTTCAAGTTCGATTACACTCAGCTTCGAGGGCATATCATTTACAGTATAACTCAAGGCTAG
129 AGACCTTCGAGTTCGATTACACTCAGC-TCCAAGGCATATCATTTACAGTATAACTCAAGGCTAG
* * * *
753571 AAGGGTTATTTGTCACCAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCATAT
193 AAGGGTTATCTG--ACCAAAAACCTTCGAGTTCGACTACGCTCAGCTTCGAGGGCATAT
* * * * ** * *
753629 CATTTGCAGCACAACTTAAGTCTAGAAGGGTTGTCTGTCAACAAAGACCCCCGAGTTCGATTACA
1 CATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGTCAACAAAGACCTTCGAGTTCGACTACG
* *
753694 CTCAGCTTCGAAGGCACATCATTTACAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAA
66 CTCAGC-TCTAAGGCACATCATTTACAGCATAACTTAAGTCGAGAAGGGCTATCTGCCAACCAAA
* * * * * * * *
753759 GACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAGCTTAAGTCGAGAA
130 GACCTTCGAGTTCGATTACACTCAGCTCCAAGGCATATCATTTACAGTATAACTCAAGGCTAGAA
* ** * *
753824 GGGCTATCTG-CCAAAAACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCATAT
195 GGGTTATCTGACCAAAAACCTTCGAGTTCGACTACGCTCAGCTTCGAGGGCATAT
* * * * *
753878 CATTTACAGCATAACTCAAGGCTATAAGGGTTATTTGTTACCAAAGACCTTCGAGTTCGACTACG
1 CATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGTCAACAAAGACCTTCGAGTTCGACTACG
* * * * * * * *
753943 CTCAGCTCCAAGGCATATCATTTGCAGCACAACTTAAGTCTAGAAGGGTTGTCTGTCAA-CAAAG
66 CTCAGCTCTAAGGCACATCATTTACAGCATAACTTAAGTCGAGAAGGGCTATCTGCCAACCAAAG
** * *
754007 ACCCCCGAGTTCGATTACACTCAGCT-TAGAGGGCATATTATTTACAGTATAACTCAAGGCTAGA
131 ACCTTCGAGTTCGATTACACTCAGCTCCA-A-GGCATATCATTTACAGTATAACTCAAGGCTAGA
* * *
754071 AGGGTTATCTGTCACCAAATACCTTCGAGTTCGACTATGTTCAGCTTCGAGGGCATAT
194 AGGGTTATCTG--ACCAAAAACCTTCGAGTTCGACTACGCTCAGCTTCGAGGGCATAT
* * * ** *
754129 CATTTGCGGTATAGCTCAAGGCTAGAAGGACTATCT-TC--CAAAGACCTTCGAGTTTGACTACG
1 CATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGTCAACAAAGACCTTCGAGTTCGACTACG
* * * * *
754191 CTCAGCTCTAAGGCACATCATTTACAACATAGCTCAAGGCAAGAAGGGCTATCT
66 CTCAGCTCTAAGGCACATCATTTACAGCATAACTTAAGTCGAGAAGGGCTATCT
754245 ATCAATAAAT
Statistics
Matches: 504, Mismatches: 100, Indels: 24
0.80 0.16 0.04
Matches are distributed among these distances:
246 1 0.00
247 28 0.06
248 231 0.46
249 76 0.15
250 1 0.00
251 104 0.21
252 25 0.05
253 38 0.08
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (249 bp):
CATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGTCAACAAAGACCTTCGAGTTCGACTACG
CTCAGCTCTAAGGCACATCATTTACAGCATAACTTAAGTCGAGAAGGGCTATCTGCCAACCAAAG
ACCTTCGAGTTCGATTACACTCAGCTCCAAGGCATATCATTTACAGTATAACTCAAGGCTAGAAG
GGTTATCTGACCAAAAACCTTCGAGTTCGACTACGCTCAGCTTCGAGGGCATAT
Found at i:753987 original size:332 final size:331
Alignment explanation
Indices: 753381--754238 Score: 1235
Period size: 332 Copynumber: 2.6 Consensus size: 331
753371 TTTTTTACAA
*
753381 CATTTACAGCATAACTCAGAGCTAGAAGGGTTATCTGCCAA-CAAAGACATTCGAGTTCGACTAC
1 CATTTACAGCATAACTCA-AGCTAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTAC
* *
753445 GCTCAGCTCTAAGG----TCATTTGCAGTATAGCTTAAGTCGAGAAGGGCTATATGCCATCCAAA
65 GCTCAGCTCCAAGGCATATCATTTGCAGTATAGCTTAAGTCGAGAAGGGCTATCTGCCA---AAA
* *
753506 AGGCCTTCAAGTTCGATTACACTCAGCTTCGAGGGCATATCATTTACAGTATAACTCAAGGCTAG
127 A--CCTTCGAGTTCGATTACACTCAGCTTCGAGGGCATATCATTTACAGCATAACTCAAGGCTAG
753571 AAGGGTTATTTGTCACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGC
190 AAGGGTTATTTGTCACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGC
753636 AGCACAACTTAAGTCTAGAAGGGTTGTCTGTCAACAAAGACCCCCGAGTTCGATTACACTCAGCT
255 AGCACAACTTAAGTCTAGAAGGGTTGTCTGTCAACAAAGACCCCCGAGTTCGATTACACTCAGCT
*
753701 TCGAAGGCACAT
320 TAGAAGGCACAT
* *
753713 CATTTACAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTAC
1 CATTTACAGCATAACTCAAG-CTAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTAC
*
753778 GCTCAGCTCCAAGGCATATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAAACC
65 GCTCAGCTCCAAGGCATATCATTTGCAGTATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAAACC
** *
753843 CCCGAGTTCGATTACACTCAGCTTCGAGGGCATATCATTTACAGCATAACTCAAGGCTATAAGGG
130 TTCGAGTTCGATTACACTCAGCTTCGAGGGCATATCATTTACAGCATAACTCAAGGCTAGAAGGG
*
753908 TTATTTGTTACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCAC
195 TTATTTGTCACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCAC
*
753973 AACTTAAGTCTAGAAGGGTTGTCTGTCAACAAAGACCCCCGAGTTCGATTACACTCAGCTTAGAG
260 AACTTAAGTCTAGAAGGGTTGTCTGTCAACAAAGACCCCCGAGTTCGATTACACTCAGCTTAGAA
*
754038 GGCATAT
325 GGCACAT
* * * * *
754045 TATTTACAGTATAACTCAAGGCTAGAAGGGTTATCTGTC-ACCAAATACCTTCGAGTTCGACTAT
1 CATTTACAGCATAACTCAA-GCTAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTAC
* * * * * * * * * *
754109 GTTCAGCTTCGAGGGCATATCATTTGCGGTATAGCTCAAGGCTAGAAGGACTATCTTCCAAAGAC
65 GCTCAGC-TCCAAGGCATATCATTTGCAGTATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAAAC
* * * * * * * * *
754174 CTTCGAGTTTGACTACGCTCAGC-TCTAAGGCACATCATTTACAACATAGCTCAAGGCAAGAAGG
129 CTTCGAGTTCGATTACACTCAGCTTCGAGGGCATATCATTTACAGCATAACTCAAGGCTAGAAGG
754238 G
194 G
754239 CTATCTATCA
Statistics
Matches: 473, Mismatches: 45, Indels: 17
0.88 0.08 0.03
Matches are distributed among these distances:
331 66 0.14
332 328 0.69
333 36 0.08
334 4 0.01
337 39 0.08
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.26
Consensus pattern (331 bp):
CATTTACAGCATAACTCAAGCTAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACG
CTCAGCTCCAAGGCATATCATTTGCAGTATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAAACCT
TCGAGTTCGATTACACTCAGCTTCGAGGGCATATCATTTACAGCATAACTCAAGGCTAGAAGGGT
TATTTGTCACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCACA
ACTTAAGTCTAGAAGGGTTGTCTGTCAACAAAGACCCCCGAGTTCGATTACACTCAGCTTAGAAG
GCACAT
Found at i:755792 original size:24 final size:24
Alignment explanation
Indices: 755765--755816 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
755755 TTTCCCCTTA
*
755765 TTTTTATTTATTCTTTATT-TT-TTC
1 TTTTGATTTATT-TTT-TTATTATTC
755789 TTTTGATTTATTTTTTTATTATTC
1 TTTTGATTTATTTTTTTATTATTC
755813 TTTT
1 TTTT
755817 ATTCTTTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
22 2 0.08
23 5 0.20
24 18 0.72
ACGTcount: A:0.13, C:0.06, G:0.02, T:0.79
Consensus pattern (24 bp):
TTTTGATTTATTTTTTTATTATTC
Found at i:755816 original size:11 final size:12
Alignment explanation
Indices: 755766--755819 Score: 67
Period size: 11 Copynumber: 4.6 Consensus size: 12
755756 TTCCCCTTAT
755766 TTTTATTTATTC
1 TTTTATTTATTC
*
755778 -TTTATTTTTTC
1 TTTTATTTATTC
*
755789 TTTTGATTTATTT
1 TTTT-ATTTATTC
755802 TTTTA-TTATTC
1 TTTTATTTATTC
755813 TTTTATT
1 TTTTATT
755820 CTTTTAATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
11 20 0.57
12 5 0.14
13 10 0.29
ACGTcount: A:0.15, C:0.06, G:0.02, T:0.78
Consensus pattern (12 bp):
TTTTATTTATTC
Found at i:755925 original size:8 final size:9
Alignment explanation
Indices: 755896--755924 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
755886 TCCCTTTTGA
755896 TTTATTTTT
1 TTTATTTTT
755905 TTTATTTTT
1 TTTATTTTT
755914 TTTATTTTT
1 TTTATTTTT
755923 TT
1 TT
755925 AATATTTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (9 bp):
TTTATTTTT
Found at i:755936 original size:18 final size:18
Alignment explanation
Indices: 755897--755937 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
755887 CCCTTTTGAT
* * *
755897 TTATTTTTTTTATTTTTT
1 TTATTTTTTTAATATTTA
755915 TTATTTTTTTAATATTTA
1 TTATTTTTTTAATATTTA
755933 TTATT
1 TTATT
755938 ATTATTATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (18 bp):
TTATTTTTTTAATATTTA
Found at i:760611 original size:106 final size:106
Alignment explanation
Indices: 760102--760600 Score: 836
Period size: 106 Copynumber: 4.7 Consensus size: 106
760092 GACGAAGGGG
* * *
760102 CTTCCCAATTTCAAAGCCAATTTTAACTTCAAAGCGAAGGATATTGGACTCAAGACAACACAAGC
1 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACACAAGC
*
760167 TCAACTTCACAGCGAAGGGGCGGCTGATTGTCAACAAACAA
66 TCAACTTCACAGCGAAGGGGCGGCTGACTGTCAACAAACAA
* * * *
760208 CTTCCCAATTTTATAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCAAGACAGCACAAGC
1 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACACAAGC
760273 TCAACTTCACAGCGAAGGGGCGGCTGACTGTCAACAAACAA
66 TCAACTTCACAGCGAAGGGGCGGCTGACTGTCAACAAACAA
*
760314 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCTAGACAACACAAGC
1 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACACAAGC
760379 TCAACTTCACAGCGAAGGGGCGGCTGACTGTCAACAAACAA
66 TCAACTTCACAGCGAAGGGGCGGCTGACTGTCAACAAACAA
*
760420 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAGTGAAGGATATTGGACTCAAGACAACACAAGC
1 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACACAAGC
* *
760485 TCAACTTCACAGTGAAGGGGCGGCTGACTGTCAACAAACTA
66 TCAACTTCACAGCGAAGGGGCGGCTGACTGTCAACAAACAA
** * * * *
760526 CTTCCCAATTTCAGAATCAATTTTAACTTCCCAGCTAAGGATATTGGACCCAAGACAACACAAGC
1 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACACAAGC
760591 TCAACTTCAC
66 TCAACTTCAC
760601 GATGAAGGGG
Statistics
Matches: 370, Mismatches: 23, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
106 370 1.00
ACGTcount: A:0.35, C:0.26, G:0.17, T:0.21
Consensus pattern (106 bp):
CTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACACAAGC
TCAACTTCACAGCGAAGGGGCGGCTGACTGTCAACAAACAA
Found at i:761072 original size:83 final size:83
Alignment explanation
Indices: 760904--761072 Score: 196
Period size: 83 Copynumber: 2.0 Consensus size: 83
760894 GATATCGTGT
* * * * *
760904 TCATTTGCAACATAGCTCAAGTCGAGAAGGGTTATCTGCTAGCAAAGACCTTTGAGTTCGACTAC
1 TCATTTACAACATAACTCAAGGCGAGAAGGGTTATCTGCTAACAAAGACCTTCGAGTTCGACTAC
* *
760969 GCTCAGCTCTAAGGCATA
66 ACTCAGCTCCAAGGCATA
* * * *
760987 TCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCT-CTCAACAAAGACCTTCGAGTTCGATTC
1 TCATTTACAACATAACTCAAGGCGAGAAGGGTTATCTGCT-AACAAAGACCTTCGAGTTCGACTA
* * *
761051 CATTCAGCTCCAGGGCGTA
65 CACTCAGCTCCAAGGCATA
761070 TCA
1 TCA
761073 ACCGCGTTAC
Statistics
Matches: 71, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
82 2 0.03
83 69 0.97
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (83 bp):
TCATTTACAACATAACTCAAGGCGAGAAGGGTTATCTGCTAACAAAGACCTTCGAGTTCGACTAC
ACTCAGCTCCAAGGCATA
Found at i:761524 original size:33 final size:33
Alignment explanation
Indices: 761487--761552 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
761477 GGTAATAAAT
761487 CAACGTATTTGAG-TCTTATTAAAACACTAAAAC
1 CAACGTATTTGAGTTC-TATTAAAACACTAAAAC
*
761520 CAACGTATTTGAGTTCTATTGAAACACTAAAAC
1 CAACGTATTTGAGTTCTATTAAAACACTAAAAC
761553 TGAAGAATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 29 0.94
34 2 0.06
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30
Consensus pattern (33 bp):
CAACGTATTTGAGTTCTATTAAAACACTAAAAC
Found at i:761563 original size:33 final size:34
Alignment explanation
Indices: 761487--761566 Score: 94
Period size: 33 Copynumber: 2.4 Consensus size: 34
761477 GGTAATAAAT
*
761487 CAACGTATTTGAG-TCTTATTAAAACACTAAAAC
1 CAACGAATTTGAGTTCTTATTAAAACACTAAAAC
* *
761520 CAACGTATTTGAGTTC-TATTGAAACACTAAAAC
1 CAACGAATTTGAGTTCTTATTAAAACACTAAAAC
*
761553 TGAA-GAATTTGAGT
1 -CAACGAATTTGAGT
761567 CCAAGTAGGA
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
33 38 0.90
34 4 0.10
ACGTcount: A:0.40, C:0.15, G:0.14, T:0.31
Consensus pattern (34 bp):
CAACGAATTTGAGTTCTTATTAAAACACTAAAAC
Found at i:762049 original size:4 final size:4
Alignment explanation
Indices: 762040--762071 Score: 57
Period size: 4 Copynumber: 8.2 Consensus size: 4
762030 TGATAATATA
762040 TTAT TTAT TTAT TTAT TTAT TTA- TTAT TTAT T
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT T
762072 ATTCATTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.11
4 24 0.89
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTAT
Found at i:762057 original size:12 final size:11
Alignment explanation
Indices: 762038--762071 Score: 59
Period size: 11 Copynumber: 3.0 Consensus size: 11
762028 AATGATAATA
762038 TATTATTTATT
1 TATTATTTATT
762049 TATTTATTTATT
1 TA-TTATTTATT
762061 TATTATTTATT
1 TATTATTTATT
762072 ATTCATTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 11 0.50
12 11 0.50
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (11 bp):
TATTATTTATT
Found at i:762066 original size:7 final size:7
Alignment explanation
Indices: 762038--762074 Score: 56
Period size: 8 Copynumber: 5.0 Consensus size: 7
762028 AATGATAATA
762038 TATTATT
1 TATTATT
762045 TATTTATT
1 TA-TTATT
762053 TATTTATT
1 TA-TTATT
762061 TATTATT
1 TATTATT
762068 TATTATT
1 TATTATT
762075 CATTTTTTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
7 14 0.48
8 15 0.52
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (7 bp):
TATTATT
Found at i:765141 original size:20 final size:20
Alignment explanation
Indices: 765108--765153 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
765098 CGGTTCAAAT
*
765108 CGGTTTTACCGGTTTTCAGC
1 CGGTTCTACCGGTTTTCAGC
*
765128 CGGTTCTACTGGTTTTCAGC
1 CGGTTCTACCGGTTTTCAGC
765148 CGGTTC
1 CGGTTC
765154 ATTGTCAGAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.09, C:0.26, G:0.26, T:0.39
Consensus pattern (20 bp):
CGGTTCTACCGGTTTTCAGC
Found at i:774999 original size:18 final size:17
Alignment explanation
Indices: 774967--775000 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
774957 TCAGCCGGTC
774967 CGGTTCGAACGGTTCAA
1 CGGTTCGAACGGTTCAA
*
774984 CGGTTCTGATCGGTTCA
1 CGGTTC-GAACGGTTCA
775001 CTAATAGCGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.18, C:0.24, G:0.29, T:0.29
Consensus pattern (17 bp):
CGGTTCGAACGGTTCAA
Found at i:783236 original size:23 final size:23
Alignment explanation
Indices: 783210--783255 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
783200 ATTTATCGGT
* *
783210 TGTTTTCTTTTGAAATCCTCAAA
1 TGTTATCTTTTGAAATCATCAAA
783233 TGTTATCTTTTGAAATCATCAAA
1 TGTTATCTTTTGAAATCATCAAA
783256 ATCCTAATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.30, C:0.15, G:0.09, T:0.46
Consensus pattern (23 bp):
TGTTATCTTTTGAAATCATCAAA
Found at i:783946 original size:2 final size:2
Alignment explanation
Indices: 783941--783980 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
783931 ATATGTGTGC
783941 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
783981 TTGTTATTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:799284 original size:17 final size:17
Alignment explanation
Indices: 799264--799297 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
799254 TTAATAACAT
*
799264 ATTCTGATTAAATCTTA
1 ATTCGGATTAAATCTTA
*
799281 ATTCGGTTTAAATCTTA
1 ATTCGGATTAAATCTTA
799298 TGAATTTTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.32, C:0.12, G:0.09, T:0.47
Consensus pattern (17 bp):
ATTCGGATTAAATCTTA
Found at i:803139 original size:7 final size:7
Alignment explanation
Indices: 803127--803155 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
803117 GTTAAGGTAA
803127 CCGCAAT
1 CCGCAAT
803134 CCGCAAT
1 CCGCAAT
803141 CCGCAAT
1 CCGCAAT
803148 CCGCAAT
1 CCGCAAT
803155 C
1 C
803156 ATTATTTCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.28, C:0.45, G:0.14, T:0.14
Consensus pattern (7 bp):
CCGCAAT
Found at i:812356 original size:20 final size:20
Alignment explanation
Indices: 812331--812390 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 20
812321 TACAGAAGTT
*
812331 AAATTCGTAACGCGATTTTC
1 AAATTCGTAACACGATTTTC
* *
812351 AAATTCGTAATACTGAATTTC
1 AAATTCGTAACAC-GATTTTC
* *
812372 AAATTCGCAACTCGATTTT
1 AAATTCGTAACACGATTTT
812391 TGAATTCGCA
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
20 16 0.50
21 16 0.50
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (20 bp):
AAATTCGTAACACGATTTTC
Found at i:812397 original size:41 final size:39
Alignment explanation
Indices: 812329--812421 Score: 105
Period size: 41 Copynumber: 2.3 Consensus size: 39
812319 AATACAGAAG
* * *
812329 TTAAATTCGTAACGCGATTTTCAAATTCGTAATACTGAAT
1 TTAAATTCGCAACGCGATTTTCAAATTCGCAACA-TGAAT
* **
812369 TTCAAATTCGCAACTCGATTTTTGAATTCGCAACATGAAT
1 TT-AAATTCGCAACGCGATTTTCAAATTCGCAACATGAAT
*
812409 TTAATTTCGCAAC
1 TTAAATTCGCAAC
812422 AGGTTTTAGT
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
39 10 0.22
40 9 0.20
41 26 0.58
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (39 bp):
TTAAATTCGCAACGCGATTTTCAAATTCGCAACATGAAT
Found at i:812419 original size:19 final size:18
Alignment explanation
Indices: 812395--812440 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
812385 GATTTTTGAA
812395 TTCGCAACATGAATTTAAT
1 TTCGCAACA-GAATTTAAT
** *
812414 TTCGCAACAGGTTTTAGT
1 TTCGCAACAGAATTTAAT
812432 TTCGCAACA
1 TTCGCAACA
812441 CAGATGTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
18 15 0.62
19 9 0.38
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (18 bp):
TTCGCAACAGAATTTAAT
Found at i:812613 original size:16 final size:15
Alignment explanation
Indices: 812578--812616 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
812568 TCCCCATCTC
*
812578 TAATTTTTTTTTACA
1 TAATTTTTTTCTACA
*
812593 TAATTTTATTTCTATA
1 TAATTTT-TTTCTACA
812609 TAATTTTT
1 TAATTTTT
812617 CAATGATTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (15 bp):
TAATTTTTTTCTACA
Found at i:813232 original size:12 final size:12
Alignment explanation
Indices: 813211--813244 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
813201 ACCACATTTC
*
813211 CAATAACAAACA
1 CAATATCAAACA
813223 CAATATCAAACA
1 CAATATCAAACA
*
813235 CAATCTCAAA
1 CAATATCAAA
813245 ACCCACAACC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.59, C:0.26, G:0.00, T:0.15
Consensus pattern (12 bp):
CAATATCAAACA
Found at i:813394 original size:24 final size:24
Alignment explanation
Indices: 813362--813411 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
813352 ACTAGTCAAT
813362 ATCTTGGTCAATACCCAGACTTTG
1 ATCTTGGTCAATACCCAGACTTTG
* *
813386 ATCTTGGTCAATACTCAGATTTTG
1 ATCTTGGTCAATACCCAGACTTTG
813410 AT
1 AT
813412 GATGTTTCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (24 bp):
ATCTTGGTCAATACCCAGACTTTG
Found at i:815669 original size:18 final size:19
Alignment explanation
Indices: 815626--815669 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
815616 TTTTCCTCTA
815626 CCAAAATATGGATCCTCAT
1 CCAAAATATGGATCCTCAT
815645 CCAAAATATGGATCCTCAT
1 CCAAAATATGGATCCTCAT
815664 -CAAAAT
1 CCAAAAT
815670 CCAAAGCTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 6 0.24
19 19 0.76
ACGTcount: A:0.41, C:0.25, G:0.09, T:0.25
Consensus pattern (19 bp):
CCAAAATATGGATCCTCAT
Found at i:815722 original size:18 final size:18
Alignment explanation
Indices: 815699--815739 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
815689 AAGCAAAAGG
815699 AAATCAAAAT-TGCAATCA
1 AAATCAAAATCT-CAATCA
815717 AAATCAAAATCTCAATCA
1 AAATCAAAATCTCAATCA
*
815735 CAATC
1 AAATC
815740 GACTTCACCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 20 0.95
19 1 0.05
ACGTcount: A:0.54, C:0.22, G:0.02, T:0.22
Consensus pattern (18 bp):
AAATCAAAATCTCAATCA
Found at i:816213 original size:25 final size:25
Alignment explanation
Indices: 816172--816221 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
816162 AAATCAATTA
* *
816172 AACATTGTTGTGGGTACATTATTTG
1 AACATTGTTATGAGTACATTATTTG
816197 AACATTGTTATGAGTACATTATTTG
1 AACATTGTTATGAGTACATTATTTG
816222 GAAAATAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.28, C:0.08, G:0.20, T:0.44
Consensus pattern (25 bp):
AACATTGTTATGAGTACATTATTTG
Found at i:817779 original size:20 final size:20
Alignment explanation
Indices: 817756--817857 Score: 132
Period size: 20 Copynumber: 5.1 Consensus size: 20
817746 TCGCAACGCC
817756 AATTTGACTTTCGCATTGCG
1 AATTTGACTTTCGCATTGCG
* * *
817776 AATTTGACTTTCACGTTGCA
1 AATTTGACTTTCGCATTGCG
*
817796 AATTTGACTTTCGCATTGTG
1 AATTTGACTTTCGCATTGCG
* ** *
817816 AATTTGACTATCGCAACGTG
1 AATTTGACTTTCGCATTGCG
817836 AATTTGACTTTCGCATTGCG
1 AATTTGACTTTCGCATTGCG
817856 AA
1 AA
817858 AGTGTACCTA
Statistics
Matches: 68, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 68 1.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.38
Consensus pattern (20 bp):
AATTTGACTTTCGCATTGCG
Found at i:818024 original size:64 final size:63
Alignment explanation
Indices: 817919--818058 Score: 235
Period size: 64 Copynumber: 2.2 Consensus size: 63
817909 TTAAAACAAC
817919 AAATCAATTAAACAAGCAAAAATAATTCTTATTTACACATCAATTAAACAAATCAACTTTTAA
1 AAATCAATTAAACAAGCAAAAATAATTCTTATTTACACATCAATTAAACAAATCAACTTTTAA
* * *
817982 AAATCAATTAAACAAGCAAAAAATAATTCTTATTTCCTCATCAATTAAACAAATCAACTTTTAC
1 AAATCAATTAAACAAGC-AAAAATAATTCTTATTTACACATCAATTAAACAAATCAACTTTTAA
818046 AAATCAATGTAAA
1 AAATCAAT-TAAA
818059 ATTCAATTAA
Statistics
Matches: 72, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
63 17 0.24
64 51 0.71
65 4 0.06
ACGTcount: A:0.51, C:0.16, G:0.02, T:0.30
Consensus pattern (63 bp):
AAATCAATTAAACAAGCAAAAATAATTCTTATTTACACATCAATTAAACAAATCAACTTTTAA
Found at i:819435 original size:21 final size:21
Alignment explanation
Indices: 819408--819484 Score: 102
Period size: 21 Copynumber: 3.7 Consensus size: 21
819398 GTGAATCGAG
*
819408 CTCTTGAACGATGAGATAGGC
1 CTCTTGAACGATGAGATGGGC
*
819429 ATCTTGAACGATGAGATGGGC
1 CTCTTGAACGATGAGATGGGC
* *
819450 CTTTTGAACGATAAGA-GGCGC
1 CTCTTGAACGATGAGATGG-GC
819471 CTCTTGAACGATGA
1 CTCTTGAACGATGA
819485 CAGGTGAATC
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
20 2 0.04
21 46 0.96
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.25
Consensus pattern (21 bp):
CTCTTGAACGATGAGATGGGC
Found at i:819852 original size:21 final size:21
Alignment explanation
Indices: 819832--819871 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
819822 TCATCGCGTA
819832 AAACATC-TACCTCACCACGT
1 AAACATCATACCTCACCACGT
* *
819852 AAATATCATACCTCATCACG
1 AAACATCATACCTCACCACG
819872 CCATGCACCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.38, C:0.35, G:0.05, T:0.23
Consensus pattern (21 bp):
AAACATCATACCTCACCACGT
Found at i:821659 original size:20 final size:20
Alignment explanation
Indices: 821632--821726 Score: 138
Period size: 20 Copynumber: 4.8 Consensus size: 20
821622 AAACCTAAAT
*
821632 TCGCAACGCGAAAATGAAAA
1 TCGCAACGAGAAAATGAAAA
* * *
821652 TCGTAACGTGAACATGAAAA
1 TCGCAACGAGAAAATGAAAA
821672 TCGCAAC-ACGAAAATGAAAA
1 TCGCAACGA-GAAAATGAAAA
821692 TCGCAACGAGAAAATGAAAA
1 TCGCAACGAGAAAATGAAAA
821712 TCGCAACGAGAAAAT
1 TCGCAACGAGAAAAT
821727 CGCAATGCGA
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
20 66 0.99
21 1 0.01
ACGTcount: A:0.51, C:0.18, G:0.19, T:0.13
Consensus pattern (20 bp):
TCGCAACGAGAAAATGAAAA
Found at i:822150 original size:22 final size:22
Alignment explanation
Indices: 822120--822199 Score: 106
Period size: 22 Copynumber: 3.6 Consensus size: 22
822110 GATGGAGATA
* *
822120 GACGAATTTCGCCAGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
* *
822142 GACGGATTTCGTCGGAGAAGGG
1 GACGGATTTCGCCGGAGATGGG
*
822164 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
*
822186 GACGGATGTCGCCG
1 GACGGATTTCGCCG
822200 TAGAGAGTGA
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 51 1.00
ACGTcount: A:0.21, C:0.17, G:0.42, T:0.19
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:822375 original size:20 final size:20
Alignment explanation
Indices: 822347--822457 Score: 145
Period size: 20 Copynumber: 5.5 Consensus size: 20
822337 TAAACGCGCT
*
822347 TTGCCAATTTGACTTTTGTG
1 TTGCGAATTTGACTTTTGTG
* *
822367 TTGCGAATTTAACTTCTGTG
1 TTGCGAATTTGACTTTTGTG
822387 TTGCGAATTTGACTTTTGTG
1 TTGCGAATTTGACTTTTGTG
*
822407 TTGCGAATTTGACTTCTGTG
1 TTGCGAATTTGACTTTTGTG
*
822427 TTGCG-ATTT-ACATATTTGCG
1 TTGCGAATTTGAC-T-TTTGTG
822447 TTGCGAATTTG
1 TTGCGAATTTG
822458 GAAATTGGGT
Statistics
Matches: 79, Mismatches: 8, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
18 2 0.03
19 5 0.06
20 68 0.86
21 4 0.05
ACGTcount: A:0.17, C:0.14, G:0.23, T:0.47
Consensus pattern (20 bp):
TTGCGAATTTGACTTTTGTG
Found at i:822457 original size:40 final size:40
Alignment explanation
Indices: 822347--822457 Score: 163
Period size: 40 Copynumber: 2.8 Consensus size: 40
822337 TAAACGCGCT
* *
822347 TTGCCAATTTGACTTTTGTGTTGCGAATTTAACTTCTGTG
1 TTGCGAATTTGACTTTTGTGTTGCGAATTTGACTTCTGTG
822387 TTGCGAATTTGACTTTTGTGTTGCGAATTTGACTTCTGTG
1 TTGCGAATTTGACTTTTGTGTTGCGAATTTGACTTCTGTG
*
822427 TTGCG-ATTT-ACATATTTGCGTTGCGAATTTG
1 TTGCGAATTTGAC-T-TTTGTGTTGCGAATTTG
822458 GAAATTGGGT
Statistics
Matches: 66, Mismatches: 3, Indels: 4
0.90 0.04 0.05
Matches are distributed among these distances:
38 2 0.03
39 5 0.08
40 59 0.89
ACGTcount: A:0.17, C:0.14, G:0.23, T:0.47
Consensus pattern (40 bp):
TTGCGAATTTGACTTTTGTGTTGCGAATTTGACTTCTGTG
Found at i:823748 original size:12 final size:12
Alignment explanation
Indices: 823728--823764 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
823718 TTTGACATTA
*
823728 TAAATATATTTT
1 TAAAAATATTTT
823740 TAAAAATATTTT
1 TAAAAATATTTT
823752 TAAAAATATTTT
1 TAAAAATATTTT
823764 T
1 T
823765 GGAGAAAAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (12 bp):
TAAAAATATTTT
Found at i:827369 original size:13 final size:13
Alignment explanation
Indices: 827351--827375 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
827341 CATAGTTGAA
827351 CATTCTTCATATG
1 CATTCTTCATATG
827364 CATTCTTCATAT
1 CATTCTTCATAT
827376 ACACGTCTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.04, T:0.48
Consensus pattern (13 bp):
CATTCTTCATATG
Found at i:839360 original size:31 final size:31
Alignment explanation
Indices: 839322--839392 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
839312 AGTTAATTTT
* *
839322 TAATTTGACCAT-TGAACTTCAGATAAAATAC
1 TAATTTGACC-TCTAAAATTCAGATAAAATAC
* * *
839353 TAATTTGATCTCTAAAATTTAGATAAAATAT
1 TAATTTGACCTCTAAAATTCAGATAAAATAC
839384 TAATTTGAC
1 TAATTTGAC
839393 TCATGAATCC
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
30 1 0.03
31 32 0.97
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.38
Consensus pattern (31 bp):
TAATTTGACCTCTAAAATTCAGATAAAATAC
Found at i:846360 original size:25 final size:25
Alignment explanation
Indices: 846332--846382 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
846322 TATTTTTATT
*
846332 ATAGTTCTCAGTATTATATTATGTG
1 ATAGTTCTCAGTATTATATTACGTG
846357 ATAGTTCTCAGTATTATATTACGTG
1 ATAGTTCTCAGTATTATATTACGTG
846382 A
1 A
846383 GTTATATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.29, C:0.10, G:0.16, T:0.45
Consensus pattern (25 bp):
ATAGTTCTCAGTATTATATTACGTG
Found at i:848266 original size:64 final size:64
Alignment explanation
Indices: 848198--848414 Score: 206
Period size: 64 Copynumber: 3.4 Consensus size: 64
848188 TTGAAGGTGT
** * ** * *
848198 ATCGATGCATTGGTAGTGCATCGATGCA-CTCTTTTAA-AATAAATACATCGAATGCAATTTGTG
1 ATCGATGCATAAGTAGTGCATCGATACATC-CCATTAATAAGAAA-ACATCGAATGCAATTAGTG
848261 C
64 C
*
848262 ATCGATGCATAAGTAGTGCATCGATACATCCCATTAATAAGGAAACATCGAATGCAATTAGTGC
1 ATCGATGCATAAGTAGTGCATCGATACATCCCATTAATAAGAAAACATCGAATGCAATTAGTGC
* * * * * * * * *
848326 ATCGATGCTTAAGGAATGCATCGATGCATCCCAGTAATAATACAACATCGAATACATTTTA-TGC
1 ATCGATGCATAAGTAGTGCATCGATACATCCCATTAATAAGAAAACATCGAATGCA-ATTAGTGC
* * *
848390 ACCGATGCATCAGTGGTGCATCGAT
1 ATCGATGCATAAGTAGTGCATCGAT
848415 GCATACCTTC
Statistics
Matches: 126, Mismatches: 24, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
64 118 0.94
65 8 0.06
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (64 bp):
ATCGATGCATAAGTAGTGCATCGATACATCCCATTAATAAGAAAACATCGAATGCAATTAGTGC
Found at i:849053 original size:30 final size:30
Alignment explanation
Indices: 849002--849076 Score: 78
Period size: 30 Copynumber: 2.5 Consensus size: 30
848992 ATGAAAAGTG
* * *
849002 ACATGAATTACATGAAAGAAACTACGTGATT
1 ACATGAA-TATATGAAAGAAACCACGAGATT
* * *
849033 ACATGTATATATGAATGAAACCATGAGATT
1 ACATGAATATATGAAAGAAACCACGAGATT
*
849063 ATATGAATATATGA
1 ACATGAATATATGA
849077 TATGGTTACA
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
30 30 0.83
31 6 0.17
ACGTcount: A:0.45, C:0.09, G:0.16, T:0.29
Consensus pattern (30 bp):
ACATGAATATATGAAAGAAACCACGAGATT
Found at i:849299 original size:103 final size:102
Alignment explanation
Indices: 849175--849395 Score: 408
Period size: 101 Copynumber: 2.2 Consensus size: 102
849165 GTCGAGGGTC
849175 TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTAAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGA-ATATATGTATTCTTTGGAACATGTGTAAAGTCTGGTGAGACACATAC
849240 TTGATCCCTAGTATATGTATATGATTCTTAAGGAGTGA
65 TTGATCCCTAGTATATGTATATGATTCTTAAGGAGTGA
*
849278 TATGTGGTCCTTCGGG-ATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACT
1 TATGTGGTCCTTCGGGAATATATGTATTCTTTGGAACATGTGTAAAGTCTGGTGAGACACATACT
*
849342 TGATCTCTAGTATATGTATATGATTCTTAAGGAGTGA
66 TGATCCCTAGTATATGTATATGATTCTTAAGGAGTGA
849379 TATGTGGTCCTTCGGGA
1 TATGTGGTCCTTCGGGA
849396 CATTATTATA
Statistics
Matches: 115, Mismatches: 2, Indels: 3
0.96 0.02 0.03
Matches are distributed among these distances:
101 99 0.86
103 16 0.14
ACGTcount: A:0.25, C:0.13, G:0.25, T:0.37
Consensus pattern (102 bp):
TATGTGGTCCTTCGGGAATATATGTATTCTTTGGAACATGTGTAAAGTCTGGTGAGACACATACT
TGATCCCTAGTATATGTATATGATTCTTAAGGAGTGA
Found at i:849441 original size:23 final size:23
Alignment explanation
Indices: 849415--849469 Score: 92
Period size: 23 Copynumber: 2.4 Consensus size: 23
849405 ATGGCACTAT
849415 GGTGCAATTCTACGCGGCACTCC
1 GGTGCAATTCTACGCGGCACTCC
* *
849438 GGTGCAATTCTACGTGGCACTTC
1 GGTGCAATTCTACGCGGCACTCC
849461 GGTGCAATT
1 GGTGCAATT
849470 ATATGAGCTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.18, C:0.27, G:0.27, T:0.27
Consensus pattern (23 bp):
GGTGCAATTCTACGCGGCACTCC
Found at i:854668 original size:103 final size:103
Alignment explanation
Indices: 854544--854766 Score: 446
Period size: 103 Copynumber: 2.2 Consensus size: 103
854534 GTCGAGGGTC
854544 TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
854609 TTGATCCCTAGTATATGTATATGATTCTTAAGGAGTGA
66 TTGATCCCTAGTATATGTATATGATTCTTAAGGAGTGA
854647 TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
854712 TTGATCCCTAGTATATGTATATGATTCTTAAGGAGTGA
66 TTGATCCCTAGTATATGTATATGATTCTTAAGGAGTGA
854750 TATGTGGTCCTTCGGGA
1 TATGTGGTCCTTCGGGA
854767 CATTATTATA
Statistics
Matches: 120, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
103 120 1.00
ACGTcount: A:0.25, C:0.13, G:0.25, T:0.37
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
TTGATCCCTAGTATATGTATATGATTCTTAAGGAGTGA
Done.