genome.fa.s7839.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007839.1 Hibiscus syriacus cultivar Beakdansim tig00110190_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  137618

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
404--534	18	7.6	18	72	15	80	44	24	19	11	1.84
457--513	14	3.7	14	77	20	60	45	22	21	10	1.82
439--529	33	2.8	32	91	3	155	46	21	20	10	1.82
530--658	19	7.3	19	75	17	125	8	17	28	45	1.77
530--621	33	2.8	33	93	3	150	7	18	28	45	1.76
702--1076	90	4.1	93	96	3	708	46	18	12	22	1.83
702--1076	183	2.0	183	96	3	702	46	18	12	22	1.83
2778--2875	19	5.7	18	73	22	86	42	22	24	10	1.84
2765--2853	14	5.7	14	73	24	72	41	23	25	8	1.83
2757--2870	33	3.5	33	93	1	203	44	21	24	9	1.82
2887--2941	14	3.6	14	73	21	56	9	27	23	40	1.85
3061--3131	33	2.2	33	92	0	115	47	18	22	11	1.80
3510--3702	20	9.6	20	82	5	219	19	19	25	35	1.95
3510--3702	60	3.2	60	83	0	251	19	19	25	35	1.95
3758--3809	20	2.6	20	96	0	95	21	13	26	38	1.90
6086--6141	18	3.2	17	70	25	53	7	33	0	58	1.25
19567--19636	18	3.9	18	72	7	61	57	1	2	38	1.23
19601--19658	26	2.2	26	78	0	62	55	0	3	41	1.17
20169--20262	20	4.6	20	75	13	93	22	21	19	37	1.95
20169--20278	41	2.7	41	89	0	148	21	20	20	36	1.95
21110--21242	21	6.5	21	71	11	96	35	26	18	19	1.95
21110--21221	40	2.8	40	84	6	145	36	26	17	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21267--21317	21	2.4	21	83	0	66	29	19	27	23	1.98
21278--21324	21	2.2	21	96	0	85	21	19	31	27	1.97
37372--37492	61	2.0	61	98	1	235	23	29	9	37	1.87
39222--39261	20	2.0	20	85	4	55	20	27	20	32	1.97
40602--40723	48	2.4	52	80	17	148	31	13	3	51	1.56
45417--45453	2	18.5	2	94	0	65	51	0	0	48	1.00
48882--48918	19	2.0	19	94	5	67	62	5	5	27	1.39
49937--50442	251	2.0	252	95	4	923	39	15	16	28	1.89
50424--50451	14	2.0	14	100	0	56	50	7	0	42	1.30
51384--51457	35	2.1	35	95	5	132	40	12	18	28	1.87
52658--52705	2	25.0	2	91	8	82	52	0	0	47	1.00
54270--54720	196	2.3	197	80	3	494	35	17	14	33	1.89
54933--54957	2	12.5	2	100	0	50	48	0	0	52	1.00
59324--59378	26	2.2	24	81	12	67	61	0	1	36	1.06
62634--62693	6	10.5	6	75	13	56	30	3	65	1	1.19
64692--64738	22	2.1	23	84	4	60	48	2	2	46	1.25
65357--65483	11	10.6	11	70	12	65	30	21	21	26	1.98
66198--66228	3	10.3	3	92	0	53	3	29	0	67	1.06
66869--66898	14	2.1	15	93	6	53	16	0	33	50	1.46
67170--67199	14	2.1	14	93	0	51	43	0	6	50	1.28
72987--73062	19	4.3	18	71	24	54	36	0	2	60	1.11
73019--73062	19	2.4	19	81	7	56	43	0	2	54	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73226--73279	17	3.2	17	72	0	54	31	0	3	64	1.11
74861--74954	21	4.5	21	92	5	129	18	35	26	20	1.95
75477--75573	33	2.9	34	85	3	124	56	4	2	37	1.30
75475--75580	34	3.2	32	82	8	122	55	4	1	37	1.32
75974--77752	128	13.9	128	95	0	3199	31	20	25	22	1.98
88608--88636	13	2.2	13	100	0	58	24	6	13	55	1.63
95775--96142	88	4.0	93	85	11	505	41	14	15	29	1.86
98654--98688	18	1.9	18	94	0	61	20	11	34	34	1.88
117936--118001	33	2.0	33	100	0	132	36	12	18	33	1.88
125711--125751	18	2.3	18	100	0	82	31	9	26	31	1.89
129360--129391	16	2.0	16	100	0	64	6	18	31	43	1.75

Tables:   1

The End!