genome.fa.s784.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000784.1 Hibiscus syriacus cultivar Beakdansim tig00001521_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  169721

Tables:   1   

This is table  1  of  1  ( 101 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2825--2872	20	2.4	20	92	0	78	47	4	22	25	1.69
12906--12935	14	2.1	14	93	0	51	63	10	0	26	1.26
16015--16068	2	27.0	2	100	0	108	50	0	0	50	1.00
20543--20584	16	2.8	16	85	10	61	50	0	0	50	1.00
20646--20724	37	2.2	37	80	8	94	56	1	1	40	1.15
20662--20814	40	3.9	39	76	13	127	53	1	0	45	1.08
20678--20769	43	2.1	43	86	4	123	53	1	0	45	1.07
20754--20803	23	2.1	25	88	7	77	62	0	0	38	0.96
21151--21207	23	2.5	23	97	2	107	36	15	19	28	1.92
30252--30300	25	2.0	25	95	0	89	26	16	20	36	1.93
30373--30422	14	3.6	14	86	10	68	66	0	0	34	0.92
30373--30422	3	17.0	3	84	12	68	66	0	0	34	0.92
30374--30429	27	2.1	27	83	6	69	66	1	1	30	1.12
30580--30926	43	8.0	44	71	12	172	24	19	30	25	1.98
30712--30912	40	4.8	41	74	10	158	24	18	31	24	1.98
30622--30964	129	2.7	129	94	1	598	24	20	29	25	1.99
30624--30964	46	7.8	45	71	14	169	24	20	29	25	1.99
31298--31380	35	2.3	36	82	10	100	38	10	18	32	1.85
31423--31488	27	2.4	28	84	7	89	42	13	7	36	1.73
31369--31559	87	2.1	87	83	6	231	43	15	10	30	1.81
31456--31605	64	2.3	63	79	11	171	44	12	10	32	1.77
31760--31986	67	3.4	67	85	4	257	44	12	12	30	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31849--31968	37	3.4	36	70	23	112	44	10	13	32	1.77
31831--31986	67	2.3	67	93	0	258	44	11	12	30	1.78
32308--32540	105	2.3	101	84	6	281	37	12	19	30	1.89
32628--32654	12	2.2	12	100	0	54	0	0	7	92	0.38
33034--33085	16	3.5	15	80	20	65	28	0	25	46	1.53
33000--33072	4	19.0	4	75	13	73	30	0	20	49	1.49
34237--34274	11	3.4	11	89	7	58	5	13	10	71	1.30
34896--34966	20	3.0	24	69	22	78	40	11	23	23	1.87
34883--34957	20	3.5	20	70	20	62	37	10	25	26	1.89
34893--34972	26	3.3	26	68	20	82	42	10	23	23	1.84
34881--34974	46	2.1	45	91	2	152	38	9	25	26	1.87
40886--40934	25	2.0	25	95	0	89	26	16	20	36	1.93
41007--41056	14	3.6	14	86	10	68	66	0	0	34	0.92
41007--41056	3	17.0	3	84	12	68	66	0	0	34	0.92
41008--41063	27	2.1	27	83	6	69	66	1	1	30	1.12
46371--47133	136	5.6	136	84	2	883	25	21	17	35	1.95
47953--48071	42	2.9	41	82	6	132	30	22	21	26	1.99
48145--48364	54	4.1	54	82	5	248	39	19	10	30	1.85
50300--50356	4	15.2	4	78	10	50	1	17	0	80	0.79
50299--50364	20	3.3	22	74	19	56	1	16	0	81	0.76
50315--50374	10	6.1	10	79	11	61	1	11	1	85	0.76
50315--50354	11	3.6	11	87	9	55	0	12	0	87	0.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50299--50374	37	2.1	37	82	5	91	2	14	1	81	0.86
50315--50364	17	2.9	17	77	14	50	0	14	0	86	0.58
50311--50364	26	2.0	29	85	10	78	0	14	0	85	0.61
67385--67429	20	2.3	19	96	3	81	53	0	20	26	1.46
68229--68315	31	2.8	30	75	5	84	14	27	31	26	1.95
69572--69604	12	2.8	12	95	0	57	48	6	9	36	1.60
70842--70881	17	2.4	17	100	0	80	65	12	0	22	1.26
75331--75432	42	2.4	42	80	6	109	27	15	5	50	1.67
75362--75705	42	8.0	45	73	9	201	22	21	9	46	1.79
75418--75703	130	2.2	128	82	6	346	22	22	10	45	1.82
75485--75705	86	2.6	84	80	7	232	20	22	9	47	1.79
75421--75621	44	4.6	44	77	7	198	21	22	10	44	1.83
77479--77512	14	2.4	14	90	5	50	14	2	8	73	1.19
80877--80960	44	1.9	44	92	0	141	50	0	0	50	1.00
87192--87240	16	3.1	16	90	0	80	20	32	0	46	1.51
90030--90110	41	1.9	44	87	7	123	30	23	13	32	1.93
93027--93263	82	2.9	83	85	2	316	23	21	14	40	1.89
93798--93842	22	2.0	22	86	0	63	40	13	11	35	1.80
103604--103656	26	2.0	26	88	0	79	33	11	11	43	1.76
105817--105861	16	2.9	17	75	18	53	57	6	0	35	1.25
107322--107364	21	2.0	21	81	0	50	30	30	25	13	1.94
107391--107428	20	1.9	20	94	0	67	23	36	31	7	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107905--108208	149	2.0	149	98	0	581	27	16	20	35	1.94
108187--108231	23	2.0	23	86	0	63	20	24	28	26	1.99
114263--114305	21	2.0	21	81	0	50	30	30	25	13	1.94
114332--114369	20	1.9	20	94	0	67	23	36	31	7	1.84
114845--115147	148	2.0	149	97	0	572	27	16	20	35	1.94
115126--115170	23	2.0	23	86	0	63	20	24	28	26	1.99
116525--116610	44	2.0	44	86	9	122	32	25	16	25	1.96
116583--116675	21	4.3	21	74	15	91	33	29	15	22	1.94
116531--116676	65	2.2	65	87	4	206	33	26	16	23	1.96
122333--122418	44	2.0	44	90	0	136	30	25	17	26	1.97
122355--122483	21	6.0	21	74	15	111	31	27	17	24	1.97
122351--122484	65	2.1	65	91	0	214	32	26	17	23	1.96
123402--123455	22	2.5	22	100	0	108	35	25	11	27	1.90
128089--128149	21	2.7	22	72	10	61	49	4	0	45	1.23
128548--128966	132	3.2	132	81	3	481	33	16	18	31	1.94
130472--130551	27	3.0	26	80	10	81	7	12	1	78	1.01
130514--130548	18	1.9	18	88	0	52	8	11	0	80	0.92
130489--130551	14	4.5	14	75	18	60	6	12	0	80	0.88
136419--136477	29	2.0	29	90	6	93	40	10	0	49	1.37
136409--136444	16	2.2	17	90	5	56	38	13	0	47	1.44
136381--136508	45	2.6	50	83	11	149	42	9	0	47	1.35
136409--136472	16	4.1	16	71	20	55	39	12	0	48	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136381--136524	45	3.0	47	73	20	113	42	8	0	49	1.33
136723--136943	110	2.0	110	98	0	424	43	4	12	38	1.65
138100--138139	16	2.4	18	80	16	50	47	0	2	50	1.14
138593--138681	38	2.3	38	100	0	178	35	16	10	37	1.83
148217--148266	15	3.3	15	73	15	50	40	6	10	44	1.63
152285--152318	16	2.1	16	100	0	68	11	52	0	35	1.38
153379--153417	19	2.1	19	95	0	69	20	38	15	25	1.92
153365--153527	65	2.5	64	85	3	220	30	26	15	27	1.96
155991--156066	20	3.8	20	67	6	55	30	31	21	17	1.96
156065--156137	19	3.9	19	75	7	69	24	28	16	30	1.96
167139--167182	2	22.0	2	100	0	88	50	0	0	50	1.00
169072--169305	114	2.1	106	79	12	240	24	20	15	38	1.92
169243--169715	131	3.6	133	84	5	622	25	21	17	34	1.96

Tables:   1

The End!