Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007841.1 Hibiscus syriacus cultivar Beakdansim tig00110195_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1873963
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 2 of 7
Found at i:379707 original size:20 final size:20
Alignment explanation
Indices: 379682--379719 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
379672 AAATTTACTT
379682 TTCGCTAAAATTTAGTGATG
1 TTCGCTAAAATTTAGTGATG
379702 TTCGCTAAAATTTAGTGA
1 TTCGCTAAAATTTAGTGA
379720 CCATTTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (20 bp):
TTCGCTAAAATTTAGTGATG
Found at i:382786 original size:20 final size:20
Alignment explanation
Indices: 382753--382804 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
382743 AACGCGATCT
*
382753 CCAGAATCGTAAATCAGTTC
1 CCAGAATCGCAAATCAGTTC
* *
382773 CCATAATCGCAAATCAGTTT
1 CCAGAATCGCAAATCAGTTC
382793 CCAGAATCGCAA
1 CCAGAATCGCAA
382805 CGCGATTATG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.37, C:0.27, G:0.13, T:0.23
Consensus pattern (20 bp):
CCAGAATCGCAAATCAGTTC
Found at i:382945 original size:20 final size:20
Alignment explanation
Indices: 382878--383073 Score: 173
Period size: 20 Copynumber: 9.7 Consensus size: 20
382868 CGCGAACATA
*
382878 TAAATCGCAACGCG-ATTC-
1 TAAATCGCAACGCGTATCCG
* * *
382896 TAACTATAGCAACGAGTATTCG
1 TAA--ATCGCAACGCGTATCCG
382918 TAAAATCGCAACGCGTATCCG
1 T-AAATCGCAACGCGTATCCG
* * * *
382939 TAAATCGTAACGAGAATACG
1 TAAATCGCAACGCGTATCCG
**
382959 TAAATCGCAACGCGTATCTA
1 TAAATCGCAACGCGTATCCG
* * *
382979 TAAATCGCAACGAGAATACG
1 TAAATCGCAACGCGTATCCG
*
382999 TAAATCGCAAAGCGTATCCG
1 TAAATCGCAACGCGTATCCG
* *
383019 TAAATCGCAACGAC-AATACG
1 TAAATCGCAACG-CGTATCCG
*
383039 TAAAATTGCAACGCGTATCCG
1 T-AAATCGCAACGCGTATCCG
383060 TAAATCGCAACGCG
1 TAAATCGCAACGCG
383074 ATTTTTAAAC
Statistics
Matches: 139, Mismatches: 31, Indels: 14
0.76 0.17 0.08
Matches are distributed among these distances:
18 3 0.02
20 98 0.71
21 35 0.25
22 1 0.01
23 2 0.01
ACGTcount: A:0.38, C:0.23, G:0.18, T:0.20
Consensus pattern (20 bp):
TAAATCGCAACGCGTATCCG
Found at i:382967 original size:81 final size:80
Alignment explanation
Indices: 382878--383071 Score: 239
Period size: 81 Copynumber: 2.4 Consensus size: 80
382868 CGCGAACATA
* * * *
382878 TAAATCGCAACGCG-ATTCTA-ACTATAGCAACGAGTATTCGTAAAATCGCAACGCGTATCCGTA
1 TAAATCGCAACGCGTA-TCTATA-AATAGCAACGAGAATACGT-AAATCGCAAAGCGTATCCGTA
* *
382941 AATCGTAACGAGAATACG
63 AATCGCAACGACAATACG
*
382959 TAAATCGCAACGCGTATCTATAAATCGCAACGAGAATACGTAAATCGCAAAGCGTATCCGTAAAT
1 TAAATCGCAACGCGTATCTATAAATAGCAACGAGAATACGTAAATCGCAAAGCGTATCCGTAAAT
383024 CGCAACGACAATACG
66 CGCAACGACAATACG
* ** *
383039 TAAAATTGCAACGCGTATCCGTAAATCGCAACG
1 T-AAATCGCAACGCGTATCTATAAATAGCAACG
383072 CGATTTTTAA
Statistics
Matches: 100, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
80 37 0.37
81 61 0.61
82 2 0.02
ACGTcount: A:0.38, C:0.23, G:0.18, T:0.21
Consensus pattern (80 bp):
TAAATCGCAACGCGTATCTATAAATAGCAACGAGAATACGTAAATCGCAAAGCGTATCCGTAAAT
CGCAACGACAATACG
Found at i:382973 original size:40 final size:41
Alignment explanation
Indices: 382879--383071 Score: 250
Period size: 40 Copynumber: 4.8 Consensus size: 41
382869 GCGAACATAT
* * * *
382879 AAATCGCAACGCG-ATTC-TAACTATAGCAACGAGTATTCGTA
1 AAATCGCAACGCGTATCCGTAA--ATCGCAACGAGAATACGTA
*
382920 AAATCGCAACGCGTATCCGTAAATCGTAACGAGAATACGT-
1 AAATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGTA
**
382960 AAATCGCAACGCGTATCTATAAATCGCAACGAGAATACGT-
1 AAATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGTA
* *
383000 AAATCGCAAAGCGTATCCGTAAATCGCAACGACAATACGTA
1 AAATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGTA
*
383041 AAATTGCAACGCGTATCCGTAAATCGCAACG
1 AAATCGCAACGCGTATCCGTAAATCGCAACG
383072 CGATTTTTAA
Statistics
Matches: 135, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
40 73 0.54
41 56 0.41
42 3 0.02
43 3 0.02
ACGTcount: A:0.38, C:0.23, G:0.18, T:0.20
Consensus pattern (41 bp):
AAATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGTA
Found at i:383690 original size:21 final size:20
Alignment explanation
Indices: 383629--383704 Score: 93
Period size: 20 Copynumber: 3.8 Consensus size: 20
383619 TTCTAAACTT
383629 AAAATCGCAAC-ATGAAAATG
1 AAAATCGCAACGA-GAAAATG
383649 AAAATCGCAAC-ACGAAAATG
1 AAAATCGCAACGA-GAAAATG
**
383669 ACTATCGCAACGAGAGAAATG
1 AAAATCGCAACGAGA-AAATG
383690 AAAATCGCAACGAGA
1 AAAATCGCAACGAGA
383705 TAATCGCAAC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
20 30 0.61
21 19 0.39
ACGTcount: A:0.51, C:0.18, G:0.18, T:0.12
Consensus pattern (20 bp):
AAAATCGCAACGAGAAAATG
Found at i:383745 original size:19 final size:19
Alignment explanation
Indices: 383706--383747 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
383696 GCAACGAGAT
* **
383706 AATCGCAACGCGAAATGAA
1 AATCACAACGCGAAACCAA
383725 AATCACAACGCGAAACCAA
1 AATCACAACGCGAAACCAA
383744 AATC
1 AATC
383748 GCATTGCGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.50, C:0.26, G:0.14, T:0.10
Consensus pattern (19 bp):
AATCACAACGCGAAACCAA
Found at i:383768 original size:19 final size:19
Alignment explanation
Indices: 383746--383796 Score: 84
Period size: 19 Copynumber: 2.7 Consensus size: 19
383736 GAAACCAAAA
*
383746 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
383765 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
383784 TCTCGTTGCGATT
1 TCGCGTTGCGATT
383797 CTCTCGTTAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.12, C:0.22, G:0.20, T:0.47
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:383844 original size:20 final size:20
Alignment explanation
Indices: 383794--383845 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
383784 TCTCGTTGCG
*
383794 ATTCTCTCGTTACGATAGTC
1 ATTCTCTCGTTGCGATAGTC
*
383814 ATT-TCCGCGTTGCGATAGTC
1 ATTCT-CTCGTTGCGATAGTC
383834 ATTCTCTCGTTG
1 ATTCTCTCGTTG
383846 TGATTTTCAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 1 0.04
20 25 0.93
21 1 0.04
ACGTcount: A:0.15, C:0.25, G:0.19, T:0.40
Consensus pattern (20 bp):
ATTCTCTCGTTGCGATAGTC
Found at i:385466 original size:18 final size:18
Alignment explanation
Indices: 385443--385492 Score: 91
Period size: 18 Copynumber: 2.8 Consensus size: 18
385433 TTTACTCGTA
*
385443 ATTTCACTTATATTAACC
1 ATTTCACTTAGATTAACC
385461 ATTTCACTTAGATTAACC
1 ATTTCACTTAGATTAACC
385479 ATTTCACTTAGATT
1 ATTTCACTTAGATT
385493 GCTTAGAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.32, C:0.20, G:0.04, T:0.44
Consensus pattern (18 bp):
ATTTCACTTAGATTAACC
Found at i:385661 original size:94 final size:94
Alignment explanation
Indices: 385500--385876 Score: 551
Period size: 94 Copynumber: 4.0 Consensus size: 94
385490 ATTGCTTAGA
* * * *
385500 AAATTTATTCGGTTGCTGTCAATACTGCTAAATTGTTTATTCTTTAACACTGTGAAGTTAGTATT
1 AAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGTATT
**
385565 TGTCTTTTGTTTTGCCTTTTGGTTG-AAGT
66 TGTC-TTTGTTTTATCTTTTGGTTGAAAGT
* *
385594 AAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTTTAAAGTTAGTATT
1 AAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGTATT
385659 TGTCTTTGTTTTATCTTTTGGTTGAAAGT
66 TGTCTTTGTTTTATCTTTTGGTTGAAAGT
* * *
385688 AAATTTGTTCGGTTGCTGCCAATTCTGTTAAACTGTATATTCTTTAACACTGTGAAGTTAGTATT
1 AAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGTATT
* * *
385753 TGTTTTTGTTTTGTCTTTTAGTTGAAAGT
66 TGTCTTTGTTTTATCTTTTGGTTGAAAGT
* * * * * *
385782 AAATTTGTTCGGTTTCTGCCAATTCTGTTAAACTTTGTATTCTTTAATACTCTGAAGTTAGTATT
1 AAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGTATT
385847 TGTCTTTGTTTTATCTTTTGGTTG-AAGT
66 TGTCTTTGTTTTATCTTTTGGTTGAAAGT
385875 AA
1 AA
385877 TGCAATCCAT
Statistics
Matches: 258, Mismatches: 24, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
93 24 0.09
94 234 0.91
ACGTcount: A:0.22, C:0.12, G:0.17, T:0.49
Consensus pattern (94 bp):
AAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGTATT
TGTCTTTGTTTTATCTTTTGGTTGAAAGT
Found at i:386039 original size:19 final size:19
Alignment explanation
Indices: 385964--386030 Score: 81
Period size: 19 Copynumber: 3.8 Consensus size: 19
385954 AAAAATGACT
**
385964 ATCGCAACGCGAAATGAAA
1 ATCGCAACGCGAAACCAAA
385983 ATCGCAA--CG--A-CAAA
1 ATCGCAACGCGAAACCAAA
385997 ATCGCAACGCGAAACCAAA
1 ATCGCAACGCGAAACCAAA
386016 ATCGCAACGCGAAAC
1 ATCGCAACGCGAAAC
386031 TATAATCGCG
Statistics
Matches: 42, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
14 10 0.24
15 1 0.02
16 2 0.05
17 2 0.05
18 1 0.02
19 26 0.62
ACGTcount: A:0.46, C:0.28, G:0.18, T:0.07
Consensus pattern (19 bp):
ATCGCAACGCGAAACCAAA
Found at i:386126 original size:19 final size:19
Alignment explanation
Indices: 386036--386118 Score: 122
Period size: 19 Copynumber: 4.6 Consensus size: 19
386026 GAAACTATAA
386036 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
386055 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
386074 TCGCGTTGCGATTCTC--T
1 TCGCGTTGCGATTTTCATT
386091 T---GTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
386107 TCGCGTTGCGAT
1 TCGCGTTGCGAT
386119 AGTCATTTTT
Statistics
Matches: 57, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
14 11 0.19
16 2 0.04
17 2 0.04
19 42 0.74
ACGTcount: A:0.10, C:0.22, G:0.23, T:0.46
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:386619 original size:21 final size:21
Alignment explanation
Indices: 386595--386664 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
386585 TCATTCATCG
386595 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
386616 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
386637 AGAGGTCGTCCCTCCCACCATTCA
1 AGA-GTC--CCCTCCCACCGTTCA
386661 AGAG
1 AGAG
386665 CCCGATTCAC
Statistics
Matches: 33, Mismatches: 13, Indels: 4
0.66 0.26 0.08
Matches are distributed among these distances:
21 18 0.55
22 2 0.06
23 1 0.03
24 12 0.36
ACGTcount: A:0.23, C:0.36, G:0.21, T:0.20
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:388205 original size:19 final size:19
Alignment explanation
Indices: 388173--388211 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
388163 GCAACGAGAG
*
388173 AATCGTAATCCGAAATTAA
1 AATCGTAATCCGAAACTAA
388192 AATCGTAA-CGCGAAACTAA
1 AATCGTAATC-CGAAACTAA
388211 A
1 A
388212 TTCGCGTTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 1 0.06
19 17 0.94
ACGTcount: A:0.49, C:0.18, G:0.13, T:0.21
Consensus pattern (19 bp):
AATCGTAATCCGAAACTAA
Found at i:388258 original size:33 final size:33
Alignment explanation
Indices: 388216--388363 Score: 127
Period size: 33 Copynumber: 4.3 Consensus size: 33
388206 ACTAAATTCG
388216 CGTTGCGATTTTCATTTCGCTTTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCTTTGCGATTCTCT
* * *
388249 CGTTGCGATTTTTATTTCGCGTTGCGATAGTCATTTCCG
1 CGTTGCGATTTTCATTTCGCTTTGCGAT--TC---T-CT
* * * * *
388288 CGTTACGATATTCATATTCG-TATTGTGATTTTCA
1 CGTTGCGATTTTCAT-TTCGCT-TTGCGATTCTCT
*
388322 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCTTTGCGATTCTCT
*
388355 TGTTGCGAT
1 CGTTGCGAT
388364 AGTAATTTTC
Statistics
Matches: 89, Mismatches: 17, Indels: 18
0.72 0.14 0.15
Matches are distributed among these distances:
33 47 0.53
34 14 0.16
35 3 0.03
38 2 0.02
39 13 0.15
40 10 0.11
ACGTcount: A:0.14, C:0.20, G:0.20, T:0.46
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCTTTGCGATTCTCT
Found at i:388291 original size:20 final size:19
Alignment explanation
Indices: 388262--388307 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
388252 TGCGATTTTT
*
388262 ATTTCGCGTTGCGATAGTC
1 ATTTCGCGTTACGATAGTC
*
388281 ATTTCCGCGTTACGATATTC
1 ATTT-CGCGTTACGATAGTC
388301 ATATTCG
1 AT-TTCG
388308 TATTGTGATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 4 0.17
20 17 0.74
21 2 0.09
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.39
Consensus pattern (19 bp):
ATTTCGCGTTACGATAGTC
Found at i:388339 original size:73 final size:72
Alignment explanation
Indices: 388214--388349 Score: 184
Period size: 73 Copynumber: 1.9 Consensus size: 72
388204 AAACTAAATT
* * * * *
388214 CGCGTTGCGATTTTCATTTCGCTTTGCGATTCTCTCGTTGCGATTTTTATTTCGCGTTGCGATAG
1 CGCGTTACGATATTCATTTCGCTTTGCGATTCTCACGTTGCGATTTTCATTTCGCATTGCGATAG
388279 TCATTTC
66 TCATTTC
* *
388286 CGCGTTACGATATTCATATTCG-TATTGTGATTTTCACGTTGCGATTTTCATTTCGCATTGCGAT
1 CGCGTTACGATATTCAT-TTCGCT-TTGCGATTCTCACGTTGCGATTTTCATTTCGCATTGCGAT
388350 TCTCTTGTTG
Statistics
Matches: 55, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
72 16 0.29
73 39 0.71
ACGTcount: A:0.15, C:0.21, G:0.20, T:0.45
Consensus pattern (72 bp):
CGCGTTACGATATTCATTTCGCTTTGCGATTCTCACGTTGCGATTTTCATTTCGCATTGCGATAG
TCATTTC
Found at i:388429 original size:20 final size:20
Alignment explanation
Indices: 388355--388429 Score: 55
Period size: 20 Copynumber: 3.7 Consensus size: 20
388345 GCGATTCTCT
* *
388355 TGTTGCGATAGTAATTTTCG
1 TGTTGCGATAGTCATTTACG
* * *
388375 CGTTGCGATAGACA-TTAAG
1 TGTTGCGATAGTCATTTACG
*
388394 ATGATTGCGA-ACGTCATTTCCG
1 -TG-TTGCGATA-GTCATTTACG
388416 TGTTGCGATAGTCA
1 TGTTGCGATAGTCA
388430 AATGAATGCC
Statistics
Matches: 41, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
19 3 0.07
20 23 0.56
21 12 0.29
22 3 0.07
ACGTcount: A:0.24, C:0.16, G:0.25, T:0.35
Consensus pattern (20 bp):
TGTTGCGATAGTCATTTACG
Found at i:390934 original size:24 final size:24
Alignment explanation
Indices: 390900--390953 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
390890 CTGAAAAATC
390900 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
390924 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
390948 ATCAAA
1 ATCAAA
390954 TTTCGAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:390967 original size:24 final size:24
Alignment explanation
Indices: 390900--390967 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
390890 CTGAAAAATC
* * *
390900 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
** *
390924 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
* *
390948 ATCAAATTTCGAATACTGAC
1 ATCAAAGTCCGAATACTGAC
390968 TAGTACTCAC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.24
Consensus pattern (24 bp):
ATCAAAGTCCGAATACTGACCAAG
Found at i:391831 original size:20 final size:20
Alignment explanation
Indices: 391808--391860 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
391798 CGATAGTCAG
391808 AATCTCATTGCGATTTACGT
1 AATCTCATTGCGATTTACGT
* *
391828 AATCGT-GTTGTGATTTACGT
1 AATC-TCATTGCGATTTACGT
* *
391848 ATTCGCATTGCGA
1 AATCTCATTGCGA
391861 ATTAGGAAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
20 24 0.96
21 1 0.04
ACGTcount: A:0.23, C:0.17, G:0.21, T:0.40
Consensus pattern (20 bp):
AATCTCATTGCGATTTACGT
Found at i:391881 original size:21 final size:21
Alignment explanation
Indices: 391857--391902 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
391847 TATTCGCATT
391857 GCGAATTAGGAAAATCGCAAC
1 GCGAATTAGGAAAATCGCAAC
* * *
391878 GCGAATTTGGGAAATCGCAAT
1 GCGAATTAGGAAAATCGCAAC
391899 GCGA
1 GCGA
391903 TAGTCAGAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.17, G:0.28, T:0.17
Consensus pattern (21 bp):
GCGAATTAGGAAAATCGCAAC
Found at i:392408 original size:26 final size:22
Alignment explanation
Indices: 392344--392400 Score: 87
Period size: 22 Copynumber: 2.6 Consensus size: 22
392334 TTAATCTCCG
* * *
392344 ACGAAATCCATCCCCATTTCCG
1 ACGAAATCCGTCTCCATTTCCA
392366 ACGAAATCCGTCTCCATTTCCA
1 ACGAAATCCGTCTCCATTTCCA
392388 ACGAAATCCGTCT
1 ACGAAATCCGTCT
392401 ATCTCCATCT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.28, C:0.37, G:0.11, T:0.25
Consensus pattern (22 bp):
ACGAAATCCGTCTCCATTTCCA
Found at i:396331 original size:33 final size:32
Alignment explanation
Indices: 396294--396355 Score: 88
Period size: 33 Copynumber: 1.9 Consensus size: 32
396284 GATTTGTTAC
396294 AATTGATGAGGAAATAAGATTTATTTTTTGATT
1 AATTGATGAGGAAATAAGATTT-TTTTTTGATT
** *
396327 AATTGATTTGTAAATAAGATTTTTTTTTG
1 AATTGATGAGGAAATAAGATTTTTTTTTG
396356 CTTGTTTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 7 0.27
33 19 0.73
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.50
Consensus pattern (32 bp):
AATTGATGAGGAAATAAGATTTTTTTTTGATT
Found at i:396777 original size:39 final size:39
Alignment explanation
Indices: 396721--396807 Score: 147
Period size: 39 Copynumber: 2.2 Consensus size: 39
396711 TCAAGTTGTA
* *
396721 GATTTTGATTTCTTTTTGCTTGGCACCATATGAGATTTG
1 GATTTTGATTTCCTTTTGCTTGACACCATATGAGATTTG
*
396760 GATTTTGATTTCCTTTTGCTTGACACCATATGAGCTTTG
1 GATTTTGATTTCCTTTTGCTTGACACCATATGAGATTTG
396799 GATTTTGAT
1 GATTTTGAT
396808 GAGCATCGGA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.18, C:0.14, G:0.20, T:0.48
Consensus pattern (39 bp):
GATTTTGATTTCCTTTTGCTTGACACCATATGAGATTTG
Found at i:397547 original size:25 final size:25
Alignment explanation
Indices: 397500--397549 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
397490 ATTATTTTTC
*
397500 CAAATAATGTACCCATAACAATGTT
1 CAAATAATGTACCCACAACAATGTT
** *
397525 CAAATAATGTTTCCACAATAATGTT
1 CAAATAATGTACCCACAACAATGTT
397550 TAATTGATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.32
Consensus pattern (25 bp):
CAAATAATGTACCCACAACAATGTT
Found at i:397663 original size:20 final size:20
Alignment explanation
Indices: 397640--397681 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
397630 AATAAGCGTT
397640 GCGATAGTCAAATTCGCTAC
1 GCGATAGTCAAATTCGCTAC
397660 GCGATAGTCAAATTCGCTAC
1 GCGATAGTCAAATTCGCTAC
397680 GC
1 GC
397682 TTATTTCGCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (20 bp):
GCGATAGTCAAATTCGCTAC
Found at i:400323 original size:24 final size:24
Alignment explanation
Indices: 400289--400342 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
400279 CCATCACATC
400289 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
400313 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
400337 ATCAAA
1 ATCAAA
400343 TTTCGAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:400356 original size:24 final size:24
Alignment explanation
Indices: 400289--400356 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
400279 CCATCACATC
* * *
400289 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
** *
400313 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
* *
400337 ATCAAATTTCGAATACTGAC
1 ATCAAAGTCCGAATACTGAC
400357 TAGTACTCAC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.24
Consensus pattern (24 bp):
ATCAAAGTCCGAATACTGACCAAG
Found at i:401283 original size:20 final size:20
Alignment explanation
Indices: 401258--401457 Score: 133
Period size: 20 Copynumber: 10.0 Consensus size: 20
401248 TTACGAAATT
401258 AAATTCGCGTTGCGAATTTG
1 AAATTCGCGTTGCGAATTTG
*
401278 AAATTC-AGTTGCGAATTTG
1 AAATTCGCGTTGCGAATTTG
**
401297 ACTTTCGCGTTGCGAATTTG
1 AAATTCGCGTTGCGAATTTG
** *
401317 ACTTTCGCGTTGAGAATTTG
1 AAATTCGCGTTGCGAATTTG
* *
401337 -ACTATCGCGTTGTGAATTTG
1 AAAT-TCGCGTTGCGAATTTG
****
401357 AAATATCGCAAAACGAATTTGG
1 AAAT-TCGCGTTGCGAATTT-G
* **
401379 AAAATCGCAATGCG-ATTT-
1 AAATTCGCGTTGCGAATTTG
*
401397 ACATATTCGCGTTGCGAAATTGG
1 A-A-ATTCGCGTTGCG-AATTTG
*
401420 AAATT-GGGTTGCGAATTTG
1 AAATTCGCGTTGCGAATTTG
* *
401439 AGA-TCGCGTTACGAATTTG
1 AAATTCGCGTTGCGAATTTG
401458 TTGGTCATTT
Statistics
Matches: 144, Mismatches: 26, Indels: 21
0.75 0.14 0.11
Matches are distributed among these distances:
18 2 0.01
19 37 0.26
20 72 0.50
21 24 0.17
22 8 0.06
23 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (20 bp):
AAATTCGCGTTGCGAATTTG
Found at i:401947 original size:16 final size:17
Alignment explanation
Indices: 401905--401954 Score: 66
Period size: 18 Copynumber: 2.9 Consensus size: 17
401895 TGGAATTTTA
401905 TAAGAGAATTGGAATCTG
1 TAAG-GAATTGGAATCTG
401923 TGAAGGAATTGGAATCTG
1 T-AAGGAATTGGAATCTG
*
401941 T-AGGAATTGAAATC
1 TAAGGAATTGGAATC
401955 CAATTCCATA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
16 12 0.40
18 15 0.50
19 3 0.10
ACGTcount: A:0.38, C:0.06, G:0.28, T:0.28
Consensus pattern (17 bp):
TAAGGAATTGGAATCTG
Found at i:401999 original size:44 final size:44
Alignment explanation
Indices: 401944--402069 Score: 209
Period size: 44 Copynumber: 2.9 Consensus size: 44
401934 GAATCTGTAG
*
401944 GAATTGAAATCCAATTCCATATTCTGTTTGGTTGGCAGGAAA-T
1 GAATTGGAATCCAATTCCATATTCTGTTTGGTTGGCAGGAAATT
401987 GAAATTGGAATCCAATTCCATATTCTGTTTGGTTGGCAGGAAATT
1 G-AATTGGAATCCAATTCCATATTCTGTTTGGTTGGCAGGAAATT
* *
402032 GAATTGGAATCCAATTCAATATTCTGTTTGGTTCGCAG
1 GAATTGGAATCCAATTCCATATTCTGTTTGGTTGGCAG
402070 ACATGTCAGA
Statistics
Matches: 78, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
43 1 0.01
44 75 0.96
45 2 0.03
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (44 bp):
GAATTGGAATCCAATTCCATATTCTGTTTGGTTGGCAGGAAATT
Found at i:402631 original size:38 final size:38
Alignment explanation
Indices: 402573--402651 Score: 133
Period size: 38 Copynumber: 2.1 Consensus size: 38
402563 TTCACCCTAA
402573 ACCCGACCCTGACCCGAATATCACACTTAAAAAAACCCG
1 ACCCGACCCTGACCCGAATATCACACTT-AAAAAACCCG
*
402612 ACCCGACTC-GACCCGAATATCACACTTAAAAAACCCG
1 ACCCGACCCTGACCCGAATATCACACTTAAAAAACCCG
402649 ACC
1 ACC
402652 TCACCCGAAC
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
37 13 0.33
38 18 0.46
39 8 0.21
ACGTcount: A:0.38, C:0.39, G:0.10, T:0.13
Consensus pattern (38 bp):
ACCCGACCCTGACCCGAATATCACACTTAAAAAACCCG
Found at i:403107 original size:27 final size:28
Alignment explanation
Indices: 403019--403110 Score: 168
Period size: 28 Copynumber: 3.3 Consensus size: 28
403009 CCGACCCGAT
*
403019 CCGACCCGAATATAACACTTAGAAAAAC
1 CCGACCCGAATATCACACTTAGAAAAAC
403047 CCGACCCGAATATCACACTTAGAAAAAC
1 CCGACCCGAATATCACACTTAGAAAAAC
403075 CCGACCCGAATATCACACTTA-AAAAAC
1 CCGACCCGAATATCACACTTAGAAAAAC
403102 CCGACCCGA
1 CCGACCCGA
403111 CCCGAACAAA
Statistics
Matches: 63, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
27 15 0.24
28 48 0.76
ACGTcount: A:0.42, C:0.34, G:0.11, T:0.13
Consensus pattern (28 bp):
CCGACCCGAATATCACACTTAGAAAAAC
Found at i:403832 original size:27 final size:28
Alignment explanation
Indices: 403765--403821 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
403755 AGATTAAAAC
403765 TCATATAATTAAAAAATAAAAATGATAT
1 TCATATAATTAAAAAATAAAAATGATAT
403793 TCATATAATTAAAAAATAAAAATGATAT
1 TCATATAATTAAAAAATAAAAATGATAT
403821 T
1 T
403822 GTTGATTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.33
Consensus pattern (28 bp):
TCATATAATTAAAAAATAAAAATGATAT
Found at i:405647 original size:62 final size:61
Alignment explanation
Indices: 405567--405764 Score: 185
Period size: 59 Copynumber: 3.3 Consensus size: 61
405557 ACTTGGTCCA
* * **
405567 CCCA-GTGTTGTTAATTTTTCTTT-GCTTAAGTCCCA-A-CATTAAACCTTTGCAACGCCCC
1 CCCACGTGATGTTAATTTTTTTTTAGCTTAAACCCCAGAGCATTAAACCTTTGCAACG-CCC
* *
405625 CCCACGTGATGTTAATTTTTTTTTAGCTTAAACCCCAGAGCATTAAGCCTTTGCAACGCTC
1 CCCACGTGATGTTAATTTTTTTTTAGCTTAAACCCCAGAGCATTAAACCTTTGCAACGCCC
* * * * * ** * *
405686 TCCACGTGATGTT-A-GTTTTTTTAGCTCAAACCCCAAAGCATGAAGTCTTCGCAACGCGC
1 CCCACGTGATGTTAATTTTTTTTTAGCTTAAACCCCAGAGCATTAAACCTTTGCAACGCCC
* *
405745 TCCATGTGATGTT-ATTTTTT
1 CCCACGTGATGTTAATTTTTT
405765 AGCTCACACC
Statistics
Matches: 119, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
58 4 0.03
59 68 0.57
60 15 0.13
61 15 0.13
62 17 0.14
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.36
Consensus pattern (61 bp):
CCCACGTGATGTTAATTTTTTTTTAGCTTAAACCCCAGAGCATTAAACCTTTGCAACGCCC
Found at i:405726 original size:59 final size:58
Alignment explanation
Indices: 405603--405783 Score: 211
Period size: 59 Copynumber: 3.1 Consensus size: 58
405593 TAAGTCCCAA
* * * *
405603 CATTAAACCTTTGCAACGCCCCCCCACGTGATGTTAATTTTTTTTTAGCTTAAACCCCAGAG
1 CATTAAGCCTTTGCAACG-CCCTCCACGTGATGTT-A--TTTTTTTAGCTCAAACCCCAAAG
*
405665 CATTAAGCCTTTGCAACGCTCTCCACGTGATGTTAGTTTTTTTAGCTCAAACCCCAAAG
1 CATTAAGCCTTTGCAACGCCCTCCACGTGATGTTA-TTTTTTTAGCTCAAACCCCAAAG
* * * * * *
405724 CATGAAGTCTTCGCAACGCGCTCCATGTGATGTTA-TTTTTTAGCTCACACCCCAAAG
1 CATTAAGCCTTTGCAACGCCCTCCACGTGATGTTATTTTTTTAGCTCAAACCCCAAAG
405781 CAT
1 CAT
405784 CAAGTTTTCA
Statistics
Matches: 107, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
57 24 0.22
59 51 0.48
60 1 0.01
61 14 0.13
62 17 0.16
ACGTcount: A:0.25, C:0.28, G:0.15, T:0.31
Consensus pattern (58 bp):
CATTAAGCCTTTGCAACGCCCTCCACGTGATGTTATTTTTTTAGCTCAAACCCCAAAG
Found at i:405807 original size:57 final size:58
Alignment explanation
Indices: 405643--405810 Score: 167
Period size: 59 Copynumber: 2.9 Consensus size: 58
405633 ATGTTAATTT
* * * * ** * * *
405643 TTTTTTAGCTTAAACCCCAGAGCATTAAGCCTTTGCAACGCTCTCCACGTGATGTTAG
1 TTTTTTAGCTCAAACCCCAAAGCATCAAGTCTTCACAACGCGCCCCATGTGATGTTAG
* * *
405701 TTTTTTTAGCTCAAACCCCAAAGCATGAAGTCTTCGCAACGCGCTCCATGTGATGTTA-
1 -TTTTTTAGCTCAAACCCCAAAGCATCAAGTCTTCACAACGCGCCCCATGTGATGTTAG
* * * **
405759 TTTTTTAGCTCACACCCCAAAGCATCAAGTTTTCATAACGTTCCCCATGTGA
1 TTTTTTAGCTCAAACCCCAAAGCATCAAGTCTTCACAACGCGCCCCATGTGA
405811 CGACGTTATT
Statistics
Matches: 94, Mismatches: 15, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
57 44 0.47
59 50 0.53
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.32
Consensus pattern (58 bp):
TTTTTTAGCTCAAACCCCAAAGCATCAAGTCTTCACAACGCGCCCCATGTGATGTTAG
Found at i:407422 original size:28 final size:28
Alignment explanation
Indices: 407389--407451 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
407379 GTATAGTTTA
*
407389 CCGTTTCTGAAAATCGACCGATTTATAT
1 CCGTTTCTGAAAATCCACCGATTTATAT
*
407417 CCGTTTCTGAAAATCCTCCGATTTATAT
1 CCGTTTCTGAAAATCCACCGATTTATAT
*
407445 CCATTTC
1 CCGTTTC
407452 GTTGCTTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.25, C:0.25, G:0.11, T:0.38
Consensus pattern (28 bp):
CCGTTTCTGAAAATCCACCGATTTATAT
Found at i:409280 original size:21 final size:22
Alignment explanation
Indices: 409247--409291 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
409237 TCATATATTG
* *
409247 ATTTTTATGATAATT-TTTTAA
1 ATTTTGATAATAATTATTTTAA
409268 ATTTTGATAATAATTATTTTAA
1 ATTTTGATAATAATTATTTTAA
409290 AT
1 AT
409292 AATTAATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (22 bp):
ATTTTGATAATAATTATTTTAA
Found at i:412322 original size:11 final size:11
Alignment explanation
Indices: 412298--412335 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
412288 TTTTATAATA
*
412298 ATTTAATAA-A
1 ATTTAATAACC
412308 ATTTAATAACC
1 ATTTAATAACC
*
412319 ATTTTATAACC
1 ATTTAATAACC
412330 ATTTAA
1 ATTTAA
412336 AATGTTTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
10 9 0.38
11 15 0.62
ACGTcount: A:0.47, C:0.11, G:0.00, T:0.42
Consensus pattern (11 bp):
ATTTAATAACC
Found at i:412337 original size:29 final size:29
Alignment explanation
Indices: 412304--412376 Score: 76
Period size: 31 Copynumber: 2.5 Consensus size: 29
412294 AATAATTTAA
412304 TAAAA-TTTAATAACCATTTTATAACCATT
1 TAAAACTTTAATAACCATTTTATAA-CATT
* * * **
412333 TAAAATGTTTAATGATCATTTTATAATTTT
1 TAAAA-CTTTAATAACCATTTTATAACATT
412363 TAAAACTTTAATAA
1 TAAAACTTTAATAA
412377 TCATAAATCA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
29 12 0.33
30 7 0.19
31 17 0.47
ACGTcount: A:0.44, C:0.08, G:0.03, T:0.45
Consensus pattern (29 bp):
TAAAACTTTAATAACCATTTTATAACATT
Found at i:412379 original size:29 final size:28
Alignment explanation
Indices: 412295--412380 Score: 82
Period size: 29 Copynumber: 2.9 Consensus size: 28
412285 TTATTTTATA
* *
412295 ATAATTTAATAAAATTTAATAACCATTTT
1 ATAATTT-TTAAAATTTAATAATCATTTT
** *
412324 ATAACCATTTAAAATGTTTAATGATCATTTT
1 ATAA-TTTTTAAAA--TTTAATAATCATTTT
412355 ATAATTTTTAAAACTTTAATAATCAT
1 ATAATTTTTAAAA-TTTAATAATCAT
412381 AAATCATTTT
Statistics
Matches: 45, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
29 20 0.44
30 8 0.18
31 17 0.38
ACGTcount: A:0.44, C:0.08, G:0.02, T:0.45
Consensus pattern (28 bp):
ATAATTTTTAAAATTTAATAATCATTTT
Found at i:421611 original size:23 final size:22
Alignment explanation
Indices: 421553--421631 Score: 68
Period size: 23 Copynumber: 3.4 Consensus size: 22
421543 AAACTAATGT
*
421553 TTTATAAATATTATATTTTAATTAA
1 TTTATAATTATT-T-TTTTAA-TAA
* * *
421578 ATTACATTTATTTTTTTAACTAA
1 TTTATAATTATTTTTTTAA-TAA
* *
421601 TTTATAATTATATGTTTAATAA
1 TTTATAATTATTTTTTTAATAA
421623 TTTATAATT
1 TTTATAATT
421632 TAACATTTTA
Statistics
Matches: 44, Mismatches: 10, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
22 12 0.27
23 23 0.52
24 1 0.02
25 8 0.18
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (22 bp):
TTTATAATTATTTTTTTAATAA
Found at i:429101 original size:27 final size:24
Alignment explanation
Indices: 429071--429131 Score: 61
Period size: 27 Copynumber: 2.4 Consensus size: 24
429061 CTTATAATTA
429071 TTAAAAAGTAAGTA-TTTTATTGTTATT
1 TTAAAAA-TAA-TACTTTTA-T-TTATT
*
429098 TTAATATATAATACTTTTATTTATT
1 TTAA-AAATAATACTTTTATTTATT
429123 TTAAAAATA
1 TTAAAAATA
429132 CATGAGTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
24 4 0.13
25 9 0.30
26 3 0.10
27 12 0.40
28 2 0.07
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.52
Consensus pattern (24 bp):
TTAAAAATAATACTTTTATTTATT
Found at i:434399 original size:52 final size:52
Alignment explanation
Indices: 434321--434425 Score: 183
Period size: 52 Copynumber: 2.0 Consensus size: 52
434311 TAGTAGAAAA
*
434321 GGTGGAAAAAGAGAAAGCAAATTGTATAACTTTATTTCATGTTGATCAGATG
1 GGTGGAAAAAGAGAAAGCAAATTGTATAACTTTATTTCATGTTCATCAGATG
* *
434373 GGTGGAGAAAGAGAAAGCAAATTGTATAACTTTATTTCATGTTCATCGGATG
1 GGTGGAAAAAGAGAAAGCAAATTGTATAACTTTATTTCATGTTCATCAGATG
434425 G
1 G
434426 CGGATATTGT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.36, C:0.09, G:0.25, T:0.30
Consensus pattern (52 bp):
GGTGGAAAAAGAGAAAGCAAATTGTATAACTTTATTTCATGTTCATCAGATG
Found at i:436406 original size:33 final size:33
Alignment explanation
Indices: 436369--436456 Score: 106
Period size: 33 Copynumber: 2.7 Consensus size: 33
436359 ATGGGTTGGG
*
436369 CATATGGATTAGCATTTGGCTGT-GCAGGTTGAC
1 CATATGGATTAGCACTTGGCTGTGGC-GGTTGAC
** *
436402 CATATGGATTAGCACCAGGTTGTGGCGGTTGAC
1 CATATGGATTAGCACTTGGCTGTGGCGGTTGAC
* *
436435 TATAAGGATTAGCACTTGGCTG
1 CATATGGATTAGCACTTGGCTG
436457 CATAGATTGG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
33 43 0.96
34 2 0.04
ACGTcount: A:0.23, C:0.16, G:0.31, T:0.31
Consensus pattern (33 bp):
CATATGGATTAGCACTTGGCTGTGGCGGTTGAC
Found at i:443860 original size:51 final size:50
Alignment explanation
Indices: 443746--443860 Score: 115
Period size: 51 Copynumber: 2.3 Consensus size: 50
443736 CTTAGCAGTA
* * * * *
443746 AAGCGCGTCCCCTGCACCGTACTATATGTTGATTTGGAGTCACGTGGGGT
1 AAGCGCGCCCCCTGCACCGCACTATATGATGAATTAGAGTCACGTGGGGT
* * *
443796 ATAGTGCGCCCCCTGCACCGCGCTATATGATGACATTAGA-TACACGTGGGTT
1 A-AGCGCGCCCCCTGCACCGCACTATATGATGA-ATTAGAGT-CACGTGGGGT
*
443848 AAGCGCGGCCCCT
1 AAGCGCGCCCCCT
443861 AATCCACGCT
Statistics
Matches: 52, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
50 1 0.02
51 37 0.71
52 14 0.27
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (50 bp):
AAGCGCGCCCCCTGCACCGCACTATATGATGAATTAGAGTCACGTGGGGT
Found at i:450068 original size:48 final size:48
Alignment explanation
Indices: 449971--450317 Score: 216
Period size: 48 Copynumber: 7.2 Consensus size: 48
449961 AGGTGATTGA
* * * * * * * *
449971 TAGTAGTATGGAGGAGGTGGTGAG-GGAGATGGAGGAGGAGGGGACTTG
1 TAGTAGTATGGAGGTGGTGGAGAGTGGA-CTGGTGGTGGTGGAGATTTG
* *
450019 TAGTAGTATGGCGGCGGTGGAGAGTGGACTGGTGGTGGTGGAGATTTG
1 TAGTAGTATGGAGGTGGTGGAGAGTGGACTGGTGGTGGTGGAGATTTG
* * * * * *
450067 TAGTAGTAGGGAGGAGGAGGGGA-TGGTGA-TGGTGGAGGAGGAGATTTG
1 TAGTAGTATGGAGGTGGTGGAGAGT-G-GACTGGTGGTGGTGGAGATTTG
* * * ** ** * * *
450115 TAGTGGTATGTAGGTGCTGGAGCCTCTACTGGAGGTGGGGGTGATTTG
1 TAGTAGTATGGAGGTGGTGGAGAGTGGACTGGTGGTGGTGGAGATTTG
* * * * * * * * *
450163 TAGTAGTATGGTGGTGGTCGAGAATGAATTGGAGGAGGGGGTGATTTG
1 TAGTAGTATGGAGGTGGTGGAGAGTGGACTGGTGGTGGTGGAGATTTG
* * * * * * *
450211 TAATAGTAAGGCGGGGGTGGTGAGGGAGAC-GGTGGTGGTGGGGATTTG
1 TAGTAGTATGGAGGTGGTGGAGAGTG-GACTGGTGGTGGTGGAGATTTG
* * * *
450259 TAATAGTATGGTGGTGGTGGAGAGTGAACTGGTGGTGGTGGGGATTTG
1 TAGTAGTATGGAGGTGGTGGAGAGTGGACTGGTGGTGGTGGAGATTTG
450307 TAGTAGTATGG
1 TAGTAGTATGG
450318 TGGAGGAGGG
Statistics
Matches: 230, Mismatches: 62, Indels: 14
0.75 0.20 0.05
Matches are distributed among these distances:
47 4 0.02
48 219 0.95
49 7 0.03
ACGTcount: A:0.20, C:0.04, G:0.50, T:0.26
Consensus pattern (48 bp):
TAGTAGTATGGAGGTGGTGGAGAGTGGACTGGTGGTGGTGGAGATTTG
Found at i:450071 original size:96 final size:96
Alignment explanation
Indices: 449971--450317 Score: 272
Period size: 96 Copynumber: 3.6 Consensus size: 96
449961 AGGTGATTGA
* *
449971 TAGTAGTATGGAGGAGGTGGTGAGGGAGA-TGGAGGAGGAGGGGACTTGTAGTAGTATGGCGGCG
1 TAGTAGTATGGAGGAGGTGGAGAGGGA-ACTGGAGGAGGAGGGGATTTGTAGTAGTATGGCGGCG
450035 GTGGAGAGTGGACTGGTGGTGGTGGAGATTTG
65 GTGGAGAGTGGACTGGTGGTGGTGGAGATTTG
* * * * * * ** *
450067 TAGTAGTAGGGAGGAGGAGGGGATGGTG-A-TGGTGGAGGAGGAGATTTGTAGTGGTATGTAGGT
1 TAGTAGTATGGAGGAGGTGGAGA-GG-GAACTGGAGGAGGAGGGGATTTGTAGTAGTATGGCGGC
* ** ** * * *
450130 GCTGGAGCCTCTACTGGAGGTGGGGGTGATTTG
64 GGTGGAGAGTGGACTGGTGGTGGTGGAGATTTG
* * * ** * * * *
450163 TAGTAGTATGGTGGTGGTCGAGAATGAATTGGAGGAGG-GGGTGATTTGTAATAGTAAGGCGGGG
1 TAGTAGTATGGAGGAGGTGGAGAGGGAACTGGAGGAGGAGGG-GATTTGTAGTAGTATGGCGGCG
* * *
450227 GTGGTGAGGGAGAC-GGTGGTGGTGGGGATTTG
65 GTGGAGAGTG-GACTGGTGGTGGTGGAGATTTG
* * * * * * *
450259 TAATAGTATGGTGGTGGTGGAGAGTGAACTGGTGGTGGTGGGGATTTGTAGTAGTATGG
1 TAGTAGTATGGAGGAGGTGGAGAGGGAACTGGAGGAGGAGGGGATTTGTAGTAGTATGG
450318 TGGAGGAGGG
Statistics
Matches: 192, Mismatches: 52, Indels: 14
0.74 0.20 0.05
Matches are distributed among these distances:
94 1 0.01
95 3 0.02
96 180 0.94
97 7 0.04
98 1 0.01
ACGTcount: A:0.20, C:0.04, G:0.50, T:0.26
Consensus pattern (96 bp):
TAGTAGTATGGAGGAGGTGGAGAGGGAACTGGAGGAGGAGGGGATTTGTAGTAGTATGGCGGCGG
TGGAGAGTGGACTGGTGGTGGTGGAGATTTG
Found at i:450209 original size:144 final size:144
Alignment explanation
Indices: 450000--450320 Score: 313
Period size: 144 Copynumber: 2.2 Consensus size: 144
449990 GTGAGGGAGA
* * * * * * * * * *
450000 TGGAGGAGGAGGGGACTTGTAGTAGTATGGCGGCGGTGGAGAGTGGACTGGTGGTGGTGGAGATT
1 TGGAGGTGGTGGGGATTTGTAGTAGTATGGTGGCGGTCGAGAATGAACTGGAGGAGGGGGAGATT
* * * * * * *
450065 TGTAGTAGTAGGGAGGAGGAGGGGATGGTGATGGTGGAGGAGGAGATTTGTAGTGGTAT-GTAGG
66 TGTAATAGTAAGGAGGAGGAGGGGAGGGAGACGGTGGAGGAGGAGATTTGTAATAGTATGGT-GG
* *
450129 TGCTGGAGCCTCTAC
130 TGCTGGAGACTCAAC
* * *
450144 TGGAGGTGG-GGGTGATTTGTAGTAGTATGGTGGTGGTCGAGAATGAATTGGAGGAGGGGGTGAT
1 TGGAGGTGGTGGG-GATTTGTAGTAGTATGGTGGCGGTCGAGAATGAACTGGAGGAGGGGGAGAT
* * * * * * *
450208 TTGTAATAGTAAGGCGGGGGTGGTGAGGGAGACGGTGGTGGTGGGGATTTGTAATAGTATGGTGG
65 TTGTAATAGTAAGGAGGAGGAGGGGAGGGAGACGGTGGAGGAGGAGATTTGTAATAGTATGGTGG
* * *
450273 TGGTGGAGAGTGAAC
130 TGCTGGAGACTCAAC
*
450288 TGGTGGTGGTGGGGATTTGTAGTAGTATGGTGG
1 TGGAGGTGGTGGGGATTTGTAGTAGTATGGTGG
450321 AGGAGGGGAT
Statistics
Matches: 142, Mismatches: 32, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
143 3 0.02
144 134 0.94
145 5 0.04
ACGTcount: A:0.20, C:0.04, G:0.50, T:0.27
Consensus pattern (144 bp):
TGGAGGTGGTGGGGATTTGTAGTAGTATGGTGGCGGTCGAGAATGAACTGGAGGAGGGGGAGATT
TGTAATAGTAAGGAGGAGGAGGGGAGGGAGACGGTGGAGGAGGAGATTTGTAATAGTATGGTGGT
GCTGGAGACTCAAC
Found at i:450318 original size:48 final size:48
Alignment explanation
Indices: 450010--450320 Score: 238
Period size: 48 Copynumber: 6.5 Consensus size: 48
450000 TGGAGGAGGA
* * * *
450010 GGGGACTTGTAGTAGTATGGCGGCGGTGGAGAGTGGACTGGTGGTGGT
1 GGGGATTTGTAGTAGTATGGTGGTGGTGGAGAGTGAACTGGTGGTGGT
* * * * * * * *
450058 GGAGATTTGTAGTAGTAGGGAGGAGGAGGGGATGGTG-A-TGGTGGAGGA
1 GGGGATTTGTAGTAGTATGGTGGTGGTGGAGA--GTGAACTGGTGGTGGT
* * * ** ** *
450106 GGAGATTTGTAGTGGTAT-GTAGGTGCTGGAGCCTCTACTGGAGGTGG-
1 GGGGATTTGTAGTAGTATGGT-GGTGGTGGAGAGTGAACTGGTGGTGGT
* * * * *
450153 GGGTGATTTGTAGTAGTATGGTGGTGGTCGAGAATGAATTGGAGGAGG-
1 GGG-GATTTGTAGTAGTATGGTGGTGGTGGAGAGTGAACTGGTGGTGGT
* * * * * *
450201 GGGTGATTTGTAATAGTAAGGCGGGGGTGGTGAGGGAGAC-GGTGGTGGT
1 GGG-GATTTGTAGTAGTATGGTGGTGGTGGAGAGTGA-ACTGGTGGTGGT
*
450250 GGGGATTTGTAATAGTATGGTGGTGGTGGAGAGTGAACTGGTGGTGGT
1 GGGGATTTGTAGTAGTATGGTGGTGGTGGAGAGTGAACTGGTGGTGGT
450298 GGGGATTTGTAGTAGTATGGTGG
1 GGGGATTTGTAGTAGTATGGTGG
450321 AGGAGGGGAT
Statistics
Matches: 205, Mismatches: 48, Indels: 20
0.75 0.18 0.07
Matches are distributed among these distances:
46 1 0.00
47 6 0.03
48 188 0.92
49 7 0.03
50 3 0.01
ACGTcount: A:0.19, C:0.04, G:0.49, T:0.27
Consensus pattern (48 bp):
GGGGATTTGTAGTAGTATGGTGGTGGTGGAGAGTGAACTGGTGGTGGT
Found at i:450350 original size:75 final size:75
Alignment explanation
Indices: 450241--450392 Score: 211
Period size: 75 Copynumber: 2.0 Consensus size: 75
450231 TGAGGGAGAC
* * *
450241 GGTGGTGGTGGGGATTTGTAATAGTATGGTGGTGGTGGAGA-GTGA-ACTGGTGGTGGTGGGGAT
1 GGTGGAGGAGGGGATTTGTAATAGTATGGTGGTGGTGGAGATG-GAGA-TGGAGGTGGTGGGGAT
450304 TTGTAGTAGTAT
64 TTGTAGTAGTAT
* *
450316 GGTGGAGGAGGGGATTTGTAGTAGTATAGG-GGTGGTGGCGATGGAGATGGAGGTGGTGGGGATT
1 GGTGGAGGAGGGGATTTGTAATAGTAT-GGTGGTGGTGGAGATGGAGATGGAGGTGGTGGGGATT
450380 TGTAGTAGTAT
65 TGTAGTAGTAT
450391 GG
1 GG
450393 GGGTGGTGGT
Statistics
Matches: 69, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
75 65 0.94
76 4 0.06
ACGTcount: A:0.18, C:0.01, G:0.50, T:0.30
Consensus pattern (75 bp):
GGTGGAGGAGGGGATTTGTAATAGTATGGTGGTGGTGGAGATGGAGATGGAGGTGGTGGGGATTT
GTAGTAGTAT
Found at i:450382 original size:48 final size:48
Alignment explanation
Indices: 450314--450824 Score: 430
Period size: 48 Copynumber: 10.6 Consensus size: 48
450304 TTGTAGTAGT
* * *
450314 ATGGTGGAGGAGGGGATTTGTAGTAGTATAGG-GGTGGTGGCGATGGAG
1 ATGGTGGTGGTGGGGATTTGTAGTAGTAT-GGTGGTGGTGGAGATGGAG
* * *
450362 ATGGAGGTGGTGGGGATTTGTAGTAGTATGGGGGTGGTGGTGATGGAG
1 ATGGTGGTGGTGGGGATTTGTAGTAGTATGGTGGTGGTGGAGATGGAG
* * * *
450410 ATGGAGGTGGTGGGGATTTGTAGTAGTATGGTGGTGGGGGAGA-GTAA
1 ATGGTGGTGGTGGGGATTTGTAGTAGTATGGTGGTGGTGGAGATGGAG
* * * *
450457 ACTGGTGGTGGTGGGGATTTGTAGTTGTATGGTGGAGGAGGAGATGGCG
1 A-TGGTGGTGGTGGGGATTTGTAGTAGTATGGTGGTGGTGGAGATGGAG
* * * * * *
450506 ACGGTGGAGGAGGGGACTTGTAGTAGTATGGCGGTGGTGGA-TTGTGA-
1 ATGGTGGTGGTGGGGATTTGTAGTAGTATGGTGGTGGTGGAGATG-GAG
* * * *
450553 ACTGGTGGTGGTGGAGATTTGTAGTAGTATGGGGGTGGAGGAGATGGCG
1 A-TGGTGGTGGTGGGGATTTGTAGTAGTATGGTGGTGGTGGAGATGGAG
* * * * * * *
450602 ACGGTGGAGGAGGGGACTTGTAGTAGTAAGGTGGTGGTGAAGAGTGTA-
1 ATGGTGGTGGTGGGGATTTGTAGTAGTATGGTGGTGGTGGAGA-TGGAG
* * * * *
450650 CTGGCGGTGGTGGGGATTTGTAGTAGTATGGTGGAGGAGGAGATGGCG
1 ATGGTGGTGGTGGGGATTTGTAGTAGTATGGTGGTGGTGGAGATGGAG
* * *
450698 ATGGTGGTGG-GGGTGATTTGTAATAGTAAGGTGGTAGAGGGGAG-TGGA-
1 ATGGTGGTGGTGGG-GATTTGTAGTAGTATGGTGGT-G-GTGGAGATGGAG
* * * * *
450746 CTGGTGGTGGTGGAGACTTGTAATAGTAGGGTGGTGGTGGAGA-GTGA-
1 ATGGTGGTGGTGGGGATTTGTAGTAGTATGGTGGTGGTGGAGATG-GAG
* * * *
450793 ACTGGTGGAGGAGGTGATTTGTAATAGTATGG
1 A-TGGTGGTGGTGGGGATTTGTAGTAGTATGG
450825 GGGTTTCTCT
Statistics
Matches: 371, Mismatches: 76, Indels: 32
0.77 0.16 0.07
Matches are distributed among these distances:
46 6 0.02
47 16 0.04
48 331 0.89
49 13 0.04
50 5 0.01
ACGTcount: A:0.20, C:0.03, G:0.50, T:0.27
Consensus pattern (48 bp):
ATGGTGGTGGTGGGGATTTGTAGTAGTATGGTGGTGGTGGAGATGGAG
Found at i:450382 original size:171 final size:171
Alignment explanation
Indices: 450157--450497 Score: 494
Period size: 171 Copynumber: 2.0 Consensus size: 171
450147 AGGTGGGGGT
450157 GATTTGTAGTAGTATGGTGGTGGTCGAGAATGAATTGGAGGAGGGGGTGATTTGTAATAGTAAGG
1 GATTTGTAGTAGTATGGTGGTGGTCGAGAATGAATTGGAGGAGGGGGTGATTTGTAATAGTAAGG
* * *
450222 CGGG-GGTGGTGAGGGAGACGGTGGTGGTGGGGATTTGTAATAGTATGGTGGTGGTGGAGAGTGA
66 -GGGTGGTGGTGAGGGAGACGGAGGTGGTGGGGATTTGTAATAGTATGGTGGTGGGGGAGAGTAA
450286 ACTGGTGGTGGTGGGGATTTGTAGTAGTATGGTGGAGGAGGG
130 ACTGGTGGTGGTGGGGATTTGTAGTAGTATGGTGGAGGAGGG
* * * *
450328 GATTTGTAGTAGTATAGG-GGTGGTGGCG-ATGGAGA-TGGAGGTGGTGGG-GATTTGTAGTAGT
1 GATTTGTAGTAGTAT-GGTGGTGGTCGAGAAT-GA-ATTGGAGGAGG-GGGTGATTTGTAATAGT
* * * *
450389 ATGGGGGTGGTGGTGATGGAGATGGAGGTGGTGGGGATTTGTAGTAGTATGGTGGTGGGGGAGAG
62 AAGGGGGTGGTGGTGAGGGAGACGGAGGTGGTGGGGATTTGTAATAGTATGGTGGTGGGGGAGAG
*
450454 TAAACTGGTGGTGGTGGGGATTTGTAGTTGTATGGTGGAGGAGG
127 TAAACTGGTGGTGGTGGGGATTTGTAGTAGTATGGTGGAGGAGG
450498 AGATGGCGAC
Statistics
Matches: 153, Mismatches: 12, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
170 5 0.03
171 142 0.93
172 6 0.04
ACGTcount: A:0.19, C:0.02, G:0.50, T:0.29
Consensus pattern (171 bp):
GATTTGTAGTAGTATGGTGGTGGTCGAGAATGAATTGGAGGAGGGGGTGATTTGTAATAGTAAGG
GGGTGGTGGTGAGGGAGACGGAGGTGGTGGGGATTTGTAATAGTATGGTGGTGGGGGAGAGTAAA
CTGGTGGTGGTGGGGATTTGTAGTAGTATGGTGGAGGAGGG
Found at i:450427 original size:123 final size:123
Alignment explanation
Indices: 450196--450449 Score: 345
Period size: 123 Copynumber: 2.1 Consensus size: 123
450186 ATGAATTGGA
* *
450196 GGAGGGGGTGATTTGTAATAGTAAGGCGGGGGTGGTGAGGGAGACGGTGGTGGTGGGGATTTGTA
1 GGAGGGGGTGATTTGTAATAGTAAGGCGGGGGTGGCGAGGGAGACGGAGGTGGTGGGGATTTGTA
* *
450261 ATAGTATGGTGGTGGTGGAGAGTGAACTGGTGGTGGTGGGGATTTGTAGTAGTATGGT
66 ATAGTATGGGGGTGGTGGAGAGTGAACTGGAGGTGGTGGGGATTTGTAGTAGTATGGT
* * * *
450319 GGAGGAGGG-GATTTGTAGTAGTATAGG-GGTGGTGGCGATGGAGATGGAGGTGGTGGGGATTTG
1 GGAGG-GGGTGATTTGTAATAGTA-AGGCGGGGGTGGCGAGGGAGACGGAGGTGGTGGGGATTTG
* *
450382 TAGTAGTATGGGGGTGGTGGTGA-TGGAGA-TGGAGGTGGTGGGGATTTGTAGTAGTATGGT
64 TAATAGTATGGGGGTGGTGGAGAGT-GA-ACTGGAGGTGGTGGGGATTTGTAGTAGTATGGT
*
450442 GGTGGGGG
1 GGAGGGGG
450450 AGAGTAAACT
Statistics
Matches: 116, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
122 4 0.03
123 105 0.91
124 7 0.06
ACGTcount: A:0.18, C:0.02, G:0.52, T:0.28
Consensus pattern (123 bp):
GGAGGGGGTGATTTGTAATAGTAAGGCGGGGGTGGCGAGGGAGACGGAGGTGGTGGGGATTTGTA
ATAGTATGGGGGTGGTGGAGAGTGAACTGGAGGTGGTGGGGATTTGTAGTAGTATGGT
Found at i:450446 original size:96 final size:96
Alignment explanation
Indices: 450316--450824 Score: 512
Period size: 96 Copynumber: 5.3 Consensus size: 96
450306 GTAGTAGTAT
* *
450316 GGTGGAGGAGGGGATTTGTAGTAGTATAGG-GGTGGTGGCGA-TGGAGATGGAGGTGGTGGGGAT
1 GGTGGAGGAGGGGATTTGTAGTAGTAT-GGTGGTGGTGGAGAGTGGA-ATGGTGGTGGTGGGGAT
* * * *
450379 TTGTAGTAGTATGGGGGTGGTGGTGATGGAGAT
64 TTGTAGTAGTATGGGGGTGGAGGAGATGGCGAC
* * * * *
450412 GGAGGTGGTGGGGATTTGTAGTAGTATGGTGGTGGGGGAGAGT-AAACTGGTGGTGGTGGGGATT
1 GGTGGAGGAGGGGATTTGTAGTAGTATGGTGGTGGTGGAGAGTGGAA-TGGTGGTGGTGGGGATT
* * *
450476 TGTAGTTGTATGGTGGAGGAGGAGATGGCGAC
65 TGTAGTAGTATGGGGGTGGAGGAGATGGCGAC
* * ** *
450508 GGTGGAGGAGGGGACTTGTAGTAGTATGGCGGTGGTGGATTGT-GAACTGGTGGTGGTGGAGATT
1 GGTGGAGGAGGGGATTTGTAGTAGTATGGTGGTGGTGGAGAGTGGAA-TGGTGGTGGTGGGGATT
450572 TGTAGTAGTATGGGGGTGGAGGAGATGGCGAC
65 TGTAGTAGTATGGGGGTGGAGGAGATGGCGAC
* * * * * *
450604 GGTGGAGGAGGGGACTTGTAGTAGTAAGGTGGTGGTGAAGAGTGTACTGGCGGTGGTGGGGATTT
1 GGTGGAGGAGGGGATTTGTAGTAGTATGGTGGTGGTGGAGAGTGGAATGGTGGTGGTGGGGATTT
* * *
450669 GTAGTAGTATGGTGGAGGAGGAGATGGCGAT
66 GTAGTAGTATGGGGGTGGAGGAGATGGCGAC
* * * * * * * * *
450700 GGTGGTGG-GGGTGATTTGTAATAGTAAGGTGGTAGAGGGGAGTGGACTGGTGGTGGTGGAGACT
1 GGTGGAGGAGGG-GATTTGTAGTAGTATGGTGGTGGTGGAGAGTGGAATGGTGGTGGTGGGGATT
* * *
450764 TGTAATAGTA-GGGTGGTGGTGGAGA-GTG-AAC
65 TGTAGTAGTATGGG-GGTGGAGGAGATG-GCGAC
* *
450795 TGGTGGAGGAGGTGATTTGTAATAGTATGG
1 -GGTGGAGGAGGGGATTTGTAGTAGTATGG
450825 GGGTTTCTCT
Statistics
Matches: 345, Mismatches: 59, Indels: 18
0.82 0.14 0.04
Matches are distributed among these distances:
95 10 0.03
96 331 0.96
97 4 0.01
ACGTcount: A:0.20, C:0.03, G:0.50, T:0.27
Consensus pattern (96 bp):
GGTGGAGGAGGGGATTTGTAGTAGTATGGTGGTGGTGGAGAGTGGAATGGTGGTGGTGGGGATTT
GTAGTAGTATGGGGGTGGAGGAGATGGCGAC
Found at i:450663 original size:192 final size:190
Alignment explanation
Indices: 450316--450788 Score: 578
Period size: 192 Copynumber: 2.5 Consensus size: 190
450306 GTAGTAGTAT
* *
450316 GGTGGAGGAGGGGATTTGTAGTAGTATAGGGGTGGTGGCGATG-GAGA-TGGAGGTGGTGGGGAT
1 GGTGGAGGAGGGGATTTGTAGTAGTAT-GGGGTGGT-G-GATGTGA-ACTGGTGGTGGTGGAGAT
* * * * * *
450379 TTGTAGTAGTATGGGGGTGGTGGTGATGGAGATGGAGGTGGTGGGGATTTGTAGTAGTATGGTGG
62 TTGTAGTAGTATGGGGGTGGTGGAGATGGAGACGGAGGAGGAGGGGACTTGTAGTAGTAAGGTGG
* * *
450444 TGGGGGAGAGTAAACTGGTGGTGGTGGGGATTTGTAGTTGTATGGTGGAGGAGGAGATGGCGAC
127 TGGGGAAGAGTAAACTGGCGGTGGTGGGGATTTGTAGTAGTATGGTGGAGGAGGAGATGGCGAC
*
450508 GGTGGAGGAGGGGACTTGTAGTAGTATGGCGGTGGTGGATTGTGAACTGGTGGTGGTGGAGATTT
1 GGTGGAGGAGGGGATTTGTAGTAGTATGG-GGTGGTGGA-TGTGAACTGGTGGTGGTGGAGATTT
* * *
450573 GTAGTAGTATGGGGGTGGAGGAGATGGCGACGGTGGAGGAGGGGACTTGTAGTAGTAAGGTGGTG
64 GTAGTAGTATGGGGGTGGTGGAGATGGAGACGGAGGAGGAGGGGACTTGTAGTAGTAAGGTGGTG
* ** *
450638 GTGAAGAGTGTACTGGCGGTGGTGGGGATTTGTAGTAGTATGGTGGAGGAGGAGATGGCGAT
129 GGGAAGAGTAAACTGGCGGTGGTGGGGATTTGTAGTAGTATGGTGGAGGAGGAGATGGCGAC
* * * * * *
450700 GGTGGTGG-GGGTGATTTGTAATAGTAAGGTGGTAGAGGGGA-GTGGACTGGTGGTGGTGGAGAC
1 GGTGGAGGAGGG-GATTTGTAGTAGTATGG-GGT-G-GTGGATGTGAACTGGTGGTGGTGGAGAT
*
450763 TTGTAATAGTA-GGGTGGTGGTGGAGA
62 TTGTAGTAGTATGGG-GGTGGTGGAGA
450789 GTGAACTGGT
Statistics
Matches: 244, Mismatches: 29, Indels: 16
0.84 0.10 0.06
Matches are distributed among these distances:
190 2 0.01
191 12 0.05
192 225 0.92
193 1 0.00
194 4 0.02
ACGTcount: A:0.19, C:0.03, G:0.51, T:0.26
Consensus pattern (190 bp):
GGTGGAGGAGGGGATTTGTAGTAGTATGGGGTGGTGGATGTGAACTGGTGGTGGTGGAGATTTGT
AGTAGTATGGGGGTGGTGGAGATGGAGACGGAGGAGGAGGGGACTTGTAGTAGTAAGGTGGTGGG
GAAGAGTAAACTGGCGGTGGTGGGGATTTGTAGTAGTATGGTGGAGGAGGAGATGGCGAC
Found at i:450802 original size:192 final size:191
Alignment explanation
Indices: 450367--450984 Score: 591
Period size: 192 Copynumber: 3.2 Consensus size: 191
450357 TGGAGATGGA
* * * * * * * * *
450367 GGTGGTGGGGATTTGTAGTAGTATGGGGGTGGTGGTGATGG-AGATGGAGGTGGTGGGGATTTGT
1 GGTGGTGGAGACTTGTAATAGTATGGGGGTGGAGGAGATGGCA-ACGGTGGAGGAGGGGATTTGT
* * ** *
450431 AGTAGTATGGTGGTGGGGGAGAGTAAACTGGTGGTGGTGGGGATTTGTAGTTGTATGGTGGAGGA
65 AGTAGTATGGTGGTGGTGAAGAGTGTACTGGTGGTGGTGGGGATTTGTAGTAGTATGGTGGAGGA
* * * * * *
450496 GGAGATGGCGACGGTGGAGGAGGG-GACTTGTAGTAGTATGGCGGTG-GTGGATTGTGAACTGGT
130 GGAGATGGCGATGGTGGTGG-GGGTGATTTGTAATAGTATGGCGGTGAGGGGA--GTGGACTGGT
* * * *
450559 GGTGGTGGAGATTTGTAGTAGTATGGGGGTGGAGGAGATGGCGACGGTGGAGGAGGGGACTTGTA
1 GGTGGTGGAGACTTGTAATAGTATGGGGGTGGAGGAGATGGCAACGGTGGAGGAGGGGATTTGTA
* *
450624 GTAGTAAGGTGGTGGTGAAGAGTGTACTGGCGGTGGTGGGGATTTGTAGTAGTATGGTGGAGGAG
66 GTAGTATGGTGGTGGTGAAGAGTGTACTGGTGGTGGTGGGGATTTGTAGTAGTATGGTGGAGGAG
* *
450689 GAGATGGCGATGGTGGTGGGGGTGATTTGTAATAGTAAGGTGGTAGAGGGGAGTGGACTGGT
131 GAGATGGCGATGGTGGTGGGGGTGATTTGTAATAGTATGGCGGT-GAGGGGAGTGGACTGGT
* *
450751 GGTGGTGGAGACTTGTAATAGTA-GGGTGGTGGTGGAGA-GTG-AACTGGTGGAGGAGGTGATTT
1 GGTGGTGGAGACTTGTAATAGTATGGG-GGTGGAGGAGATG-GCAAC-GGTGGAGGAGGGGATTT
* * ** *** * ** * *
450813 GTAATAGTATGGGGGTTTCTCTTCGTGTTTTGGTGGTGGTGGTGGTGGGGACTTATAGTAGTATG
63 GTAGTAGTATGGTGG-TGGT-GAAGAG---T-GTACTGGTGGTGGTGGGGATTTGTAGTAGTATG
* *
450878 GTGGAGGAGGAGATGGTGATGGCGGTGGGGGTGGGGGTGATTTGTAATAGTATGGCGGTGGAGGA
122 GTGGAGGAGGAGATGGCGAT---GGT---GGTGGGGGTGATTTGTAATAGTATGGCGGT-GAGGG
450943 GAGTGGACTGGT
180 GAGTGGACTGGT
* *
450955 GGTGGAGGAGACTTGTAATAATATGGGGGT
1 GGTGGTGGAGACTTGTAATAGTATGGGGGT
450985 TGCTCTACAT
Statistics
Matches: 355, Mismatches: 51, Indels: 28
0.82 0.12 0.06
Matches are distributed among these distances:
191 9 0.03
192 215 0.61
193 3 0.01
194 6 0.02
197 1 0.00
198 47 0.13
201 3 0.01
204 68 0.19
205 3 0.01
ACGTcount: A:0.19, C:0.04, G:0.50, T:0.28
Consensus pattern (191 bp):
GGTGGTGGAGACTTGTAATAGTATGGGGGTGGAGGAGATGGCAACGGTGGAGGAGGGGATTTGTA
GTAGTATGGTGGTGGTGAAGAGTGTACTGGTGGTGGTGGGGATTTGTAGTAGTATGGTGGAGGAG
GAGATGGCGATGGTGGTGGGGGTGATTTGTAATAGTATGGCGGTGAGGGGAGTGGACTGGT
Found at i:451027 original size:204 final size:198
Alignment explanation
Indices: 450655--451028 Score: 473
Period size: 204 Copynumber: 1.9 Consensus size: 198
450645 GTGTACTGGC
* *
450655 GGTGGTGGGGATTTGTAGTAGTATGGTGGAGGAGGAGATGGCGATGGTGGTGGGGGTGATTTGTA
1 GGTGGTGGGGACTTATAGTAGTATGGTGGAGGAGGAGATGGCGATGGTGGTGGGGGTGATTTGTA
* * * * * *
450720 ATAGTAAGGTGGTAGAGGGGAGTGGACTGGTGGTGGTGGAGACTTGTAATAGTAGGGTGGTGGTG
66 ATAGTAAGGCGGTAGAGGAGAGTGGACTGGTGGTGGAGGAGACTTGTAATAATAGGGTGGTGCTC
* * *
450785 GAGAGTGAACTGGTGGAGGAGGTGATTTGTAATAGTATGGGGGTTTCTCTTCGTGTTTTGGTGGT
131 GACAGTGAACTGGTGGAGGAGGAGACTTGTAATAGTATGGGGGTTTCTCTTCGTGTTTTGGTGGT
450850 GGT
196 GGT
*
450853 GGTGGTGGGGACTTATAGTAGTATGGTGGAGGAGGAGATGGTGATGGCGGTGGGGGTGGGGGTGA
1 GGTGGTGGGGACTTATAGTAGTATGGTGGAGGAGGAGATGGCGAT---GGT---GGTGGGGGTGA
* *
450918 TTTGTAATAGTATGGCGGTGGAGGAGAGTGGACTGGTGGTGGAGGAGACTTGTAATAATATGGG-
60 TTTGTAATAGTAAGGCGGTAGAGGAGAGTGGACTGGTGGTGGAGGAGACTTGTAATAATA-GGGT
* *** * * *
450982 GGTTGCTCTACA-TGTTTTGGTGGCGGCGGAGACTTGTAGTAGTATGG
124 GG-TGCTCGACAGTGAACTGGTGGAGGAGGAGACTTGTAATAGTATGG
451029 TGAAGGTGGT
Statistics
Matches: 147, Mismatches: 21, Indels: 10
0.83 0.12 0.06
Matches are distributed among these distances:
198 42 0.29
201 3 0.02
204 94 0.64
205 8 0.05
ACGTcount: A:0.19, C:0.05, G:0.47, T:0.29
Consensus pattern (198 bp):
GGTGGTGGGGACTTATAGTAGTATGGTGGAGGAGGAGATGGCGATGGTGGTGGGGGTGATTTGTA
ATAGTAAGGCGGTAGAGGAGAGTGGACTGGTGGTGGAGGAGACTTGTAATAATAGGGTGGTGCTC
GACAGTGAACTGGTGGAGGAGGAGACTTGTAATAGTATGGGGGTTTCTCTTCGTGTTTTGGTGGT
GGT
Found at i:451046 original size:33 final size:33
Alignment explanation
Indices: 451000--451063 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
450990 TACATGTTTT
*
451000 GGTGGCGGCGGAGACTTGTAGTAGTATGGTGAA
1 GGTGGCGGCGGAGACTTGTAGTAATATGGTGAA
* * *
451033 GGTGGTGGTGGAGATTTGTAGTAATATGGTG
1 GGTGGCGGCGGAGACTTGTAGTAATATGGTG
451064 GTGGTGGAGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.20, C:0.05, G:0.45, T:0.30
Consensus pattern (33 bp):
GGTGGCGGCGGAGACTTGTAGTAATATGGTGAA
Found at i:451070 original size:33 final size:33
Alignment explanation
Indices: 450999--451070 Score: 90
Period size: 33 Copynumber: 2.2 Consensus size: 33
450989 CTACATGTTT
*
450999 TGGTGGCGGCGGAGACTTGTAGTAGTATGGTGA
1 TGGTGGCGGCGGAGACTTGTAGTAATATGGTGA
* * * * *
451032 AGGTGGTGGTGGAGATTTGTAGTAATATGGTGG
1 TGGTGGCGGCGGAGACTTGTAGTAATATGGTGA
451065 TGGTGG
1 TGGTGG
451071 AGAGTAGACT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.18, C:0.04, G:0.47, T:0.31
Consensus pattern (33 bp):
TGGTGGCGGCGGAGACTTGTAGTAATATGGTGA
Found at i:451071 original size:27 final size:27
Alignment explanation
Indices: 451033--451127 Score: 94
Period size: 27 Copynumber: 3.7 Consensus size: 27
451023 GTATGGTGAA
*
451033 GGTGGTGGTGGAGATTTGTAGTAATAT
1 GGTGGTGGTGGAGACTTGTAGTAATAT
*
451060 GGTGGTGGTGGAGA---GTAG--A-CT
1 GGTGGTGGTGGAGACTTGTAGTAATAT
* *
451081 GGTGGTGGTGGAGACTTATAGTAGTAT
1 GGTGGTGGTGGAGACTTGTAGTAATAT
* *
451108 GGTGGAGGTGGTGACTTGTA
1 GGTGGTGGTGGAGACTTGTA
451128 AACATAGGTG
Statistics
Matches: 55, Mismatches: 7, Indels: 12
0.74 0.09 0.16
Matches are distributed among these distances:
21 15 0.27
22 1 0.02
24 7 0.13
27 32 0.58
ACGTcount: A:0.20, C:0.03, G:0.45, T:0.32
Consensus pattern (27 bp):
GGTGGTGGTGGAGACTTGTAGTAATAT
Found at i:451077 original size:24 final size:22
Alignment explanation
Indices: 451033--451094 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 22
451023 GTATGGTGAA
451033 GGTGGTGGTGGAGATTTGTAGTAATAT
1 GGTGGTGGTGGAGA--TGTAG--A-AT
*
451060 GGTGGTGGTGGAGA-GTAGACT
1 GGTGGTGGTGGAGATGTAGAAT
451081 GGTGGTGGTGGAGA
1 GGTGGTGGTGGAGA
451095 CTTATAGTAG
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
21 15 0.44
22 1 0.03
24 4 0.12
27 14 0.41
ACGTcount: A:0.19, C:0.02, G:0.50, T:0.29
Consensus pattern (22 bp):
GGTGGTGGTGGAGATGTAGAAT
Found at i:451403 original size:36 final size:36
Alignment explanation
Indices: 451324--451409 Score: 111
Period size: 36 Copynumber: 2.4 Consensus size: 36
451314 ATATGGGGGT
* * *
451324 GGAGGTGGTGACTTGTAGACATAAGTAGGAGTAGGC
1 GGAGGAGGTGACTTATAGACATAAGTAGGAGTAGGA
* *
451360 GGTGGAGGTGACTTATAGACATAAGTAGGCG-ATGGA
1 GGAGGAGGTGACTTATAGACATAAGTAGGAGTA-GGA
451396 GGAGGAGGTGACTT
1 GGAGGAGGTGACTT
451410 GTAGTAGTAT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
35 1 0.02
36 42 0.98
ACGTcount: A:0.28, C:0.08, G:0.42, T:0.22
Consensus pattern (36 bp):
GGAGGAGGTGACTTATAGACATAAGTAGGAGTAGGA
Found at i:451427 original size:150 final size:150
Alignment explanation
Indices: 451240--451563 Score: 441
Period size: 150 Copynumber: 2.2 Consensus size: 150
451230 AGGAGATGGT
* * * * * *
451240 GATGGTGGTGGAGGAGATTTGTAGTAGTACGGGGGATTCACTATATGTTTGGGTGGTGGTGGAGA
1 GATGGTGGAGGAGGTGATTTGTAGTAGTACGGAGGATTCACAACATGTTTAGGTGGTGGTGGAGA
* * *
451305 TTTGTAATAATATGGGGGTGGAGGTGGTGACTTGTAGACATAAGTAGGAGTAGGCGGTGGAGGTG
66 CTTGTAATAATATGGGGGAGGAGGTGGTGACTTGTAGACATAAGTAGGAGTAGGCGGCGGAGGTG
451370 ACTTATAGACATAAGTAGGC
131 ACTTATAGACATAAGTAGGC
* * * * *
451390 GATGGAGGAGGAGGTGACTTGTAGTAGTATGGAGGATTCTCAACGTGTTTAGGTGGTGGTGGAGA
1 GATGGTGGAGGAGGTGATTTGTAGTAGTACGGAGGATTCACAACATGTTTAGGTGGTGGTGGAGA
* *** * * *
451455 CTTGTAATAGTATTTTGGAGGAGGTGGTGACTTGTAGACATAAGTAGGAGTTGGTGGCGGTGGTG
66 CTTGTAATAATATGGGGGAGGAGGTGGTGACTTGTAGACATAAGTAGGAGTAGGCGGCGGAGGTG
*
451520 ACTTGTAGACATAAGTAGGC
131 ACTTATAGACATAAGTAGGC
*
451540 GACGGTGGAGGAGGTGATTTGTAG
1 GATGGTGGAGGAGGTGATTTGTAG
451564 ACATAAGTGT
Statistics
Matches: 149, Mismatches: 25, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
150 149 1.00
ACGTcount: A:0.24, C:0.06, G:0.41, T:0.29
Consensus pattern (150 bp):
GATGGTGGAGGAGGTGATTTGTAGTAGTACGGAGGATTCACAACATGTTTAGGTGGTGGTGGAGA
CTTGTAATAATATGGGGGAGGAGGTGGTGACTTGTAGACATAAGTAGGAGTAGGCGGCGGAGGTG
ACTTATAGACATAAGTAGGC
Found at i:451517 original size:36 final size:36
Alignment explanation
Indices: 451474--451598 Score: 153
Period size: 36 Copynumber: 3.5 Consensus size: 36
451464 GTATTTTGGA
*
451474 GGAGGTGGTGACTTGTAGACATAAGTAGGAGTTGGT
1 GGAGGTGGTGACTTGTAGACATAAGTAGGAGATGGT
* * *
451510 GGCGGTGGTGACTTGTAGACATAAGTAGGCGACGGT
1 GGAGGTGGTGACTTGTAGACATAAGTAGGAGATGGT
* * *
451546 GGAGGAGGTGATTTGTAGACATAAGT-GTGAGCTGGT
1 GGAGGTGGTGACTTGTAGACATAAGTAG-GAGATGGT
* *
451582 GGGGGTGGTGATTTGTA
1 GGAGGTGGTGACTTGTA
451599 TACGTAAGCC
Statistics
Matches: 76, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
35 1 0.01
36 75 0.99
ACGTcount: A:0.22, C:0.07, G:0.43, T:0.27
Consensus pattern (36 bp):
GGAGGTGGTGACTTGTAGACATAAGTAGGAGATGGT
Found at i:451563 original size:72 final size:72
Alignment explanation
Indices: 451474--451635 Score: 200
Period size: 72 Copynumber: 2.2 Consensus size: 72
451464 GTATTTTGGA
* * *
451474 GGAGGTGGTGACTTGTAGACATAAGTAG-GAGTTGGTGGCGGTGGTGACTTGTAGACATAAGTAG
1 GGAGGTGGTGATTTGTAGACATAAGT-GTGAGCTGGTGGCGGTGGTGACTTGTAGACATAAGCAG
451538 GCGACGGT
65 GCGACGGT
* * * * * *
451546 GGAGGAGGTGATTTGTAGACATAAGTGTGAGCTGGTGGGGGTGGTGATTTGTATACGTAAGCCGG
1 GGAGGTGGTGATTTGTAGACATAAGTGTGAGCTGGTGGCGGTGGTGACTTGTAGACATAAGCAGG
*
451611 TGACGGT
66 CGACGGT
* *
451618 GGCGGTGGAGATTTGTAG
1 GGAGGTGGTGATTTGTAG
451636 TAATACGGTG
Statistics
Matches: 76, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
71 1 0.01
72 75 0.99
ACGTcount: A:0.22, C:0.09, G:0.43, T:0.27
Consensus pattern (72 bp):
GGAGGTGGTGATTTGTAGACATAAGTGTGAGCTGGTGGCGGTGGTGACTTGTAGACATAAGCAGG
CGACGGT
Found at i:451619 original size:36 final size:34
Alignment explanation
Indices: 451477--451635 Score: 129
Period size: 36 Copynumber: 4.4 Consensus size: 34
451467 TTTTGGAGGA
* * **
451477 GGTGGTGACTTGTAGACATAAGTAGGAGTTGGTGGC
1 GGTGGTGATTTGTAGACATAAG--GGTGACGGTGGC
* * *
451513 GGTGGTGACTTGTAGACATAAGTAGGCGACGGTGGA
1 GGTGGTGATTTGTAGACATAAG--GGTGACGGTGGC
* * *
451549 GGAGGTGATTTGTAGACATAAGTGTGAGCTGGTGGG
1 GGTGGTGATTTGTAGACATAAGGGTGA-C-GGTGGC
* *
451585 GGTGGTGATTTGTATACGTAAGCCGGTGACGGTGGC
1 GGTGGTGATTTGTAGACATAAG--GGTGACGGTGGC
*
451621 GGTGGAGATTTGTAG
1 GGTGGTGATTTGTAG
451636 TAATACGGTG
Statistics
Matches: 103, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
34 3 0.03
35 1 0.01
36 94 0.91
37 1 0.01
38 4 0.04
ACGTcount: A:0.21, C:0.09, G:0.43, T:0.27
Consensus pattern (34 bp):
GGTGGTGATTTGTAGACATAAGGGTGACGGTGGC
Found at i:452433 original size:24 final size:23
Alignment explanation
Indices: 452406--452484 Score: 61
Period size: 24 Copynumber: 3.3 Consensus size: 23
452396 TGCTGGTGGT
452406 GGTGGAGATTTGTAGTAGTATGGA
1 GGTGGAGATTTGTAGTAGTA-GGA
* * * *
452430 GGTGAGACATAATG-AGGAGGAGGA
1 GGTG-GAGAT-TTGTAGTAGTAGGA
* *
452454 GGTGGAGATTTATAGTAGTAAGGT
1 GGTGGAGATTTGTAGTAGT-AGGA
452478 GGTGGAG
1 GGTGGAG
452485 GAGACGGTGA
Statistics
Matches: 41, Mismatches: 10, Indels: 8
0.69 0.17 0.14
Matches are distributed among these distances:
22 1 0.02
23 8 0.20
24 21 0.51
25 9 0.22
26 2 0.05
ACGTcount: A:0.29, C:0.01, G:0.44, T:0.25
Consensus pattern (23 bp):
GGTGGAGATTTGTAGTAGTAGGA
Found at i:452506 original size:48 final size:48
Alignment explanation
Indices: 452447--453169 Score: 389
Period size: 48 Copynumber: 14.8 Consensus size: 48
452437 CATAATGAGG
* * * * * * *
452447 AGGAGGAGGTGGAGATTTATAGTAGTAAGGTGGTGGAGGAGACGGTGA
1 AGGAGGTGGTGGAGACTTGTAGTAGTAAGGAGGTGGTGGGGATGGTGA
* * * * **** * *
452495 AGGTGGTGGTGGAGACTTGTAGTAGTATGGGGGCTGCTCCTCATGTTTCGG
1 AGGAGGTGGTGGAGACTTGTAGTAGTAAGGAGG-TGGTGGGGATG-GT-GA
* * * * * *
452546 TGGAGGTGGTGGAGACTGGTAGTAGTATGGAAGAGGTGGGGATGGAGA
1 AGGAGGTGGTGGAGACTTGTAGTAGTAAGGAGGTGGTGGGGATGGTGA
* * *
452594 TGGAGGTGGTGGAGACTTGTAATAGTAAGGAGGTGGTGGGGATGGGGA
1 AGGAGGTGGTGGAGACTTGTAGTAGTAAGGAGGTGGTGGGGATGGTGA
* * * * * *
452642 AGGTGGTGGTGGAGATTTATAGTAGTATGGAGGTGGTGGTGATGGAGA
1 AGGAGGTGGTGGAGACTTGTAGTAGTAAGGAGGTGGTGGGGATGGTGA
* * * *
452690 GGGAGGTGGAGGAGACTTGTAGTAGTATGGAGGAGGTGGTGATGGGGATGGAGG
1 AGGAGGTGGTGGAGACTTGTAGTAGTA---AGGAGGT-G-G-TGGGGATGGTGA
* * * * * *
452744 TGGAGGTGGAGGAGACTTGTAGTAGTATGGTGGTGGAGGAGATGGTGA
1 AGGAGGTGGTGGAGACTTGTAGTAGTAAGGAGGTGGTGGGGATGGTGA
* * * *
452792 AGGTGGTGGTGGGGATTTGTAGTAATAAGGAGGTGGTGGGGATGGTGA
1 AGGAGGTGGTGGAGACTTGTAGTAGTAAGGAGGTGGTGGGGATGGTGA
* * * * * **** * *
452840 AGGTGGTGGTGGAGACTTATAGTAGTATGGGGGCTGCTCCTCATGTTTTGG
1 AGGAGGTGGTGGAGACTTGTAGTAGTAAGGAGG-TGGTGGGGATG--GTGA
* * * * * * *
452891 TGGTGGTGGTGGAGACTTGTAG-ACGTACGGAGGAGGTGGTGACGGAGA
1 AGGAGGTGGTGGAGACTTGTAGTA-GTAAGGAGGTGGTGGGGATGGTGA
* * **** * *
452939 TGGAGGTGGTGGAGACTTGTAGTAGTAAGG-GG-GTTGCTCCTCGTGCTT
1 AGGAGGTGGTGGAGACTTGTAGTAGTAAGGAGGTGGTGGGGATGGTG--A
* * * **** * *
452987 TGGTGGTGGTGGAGACTTGTAGTAGTAAGG-GG-GTTGCTCCTCGTGCTT
1 AGGAGGTGGTGGAGACTTGTAGTAGTAAGGAGGTGGTGGGGATGGTG--A
* * * * * * * *
453035 TGGTGGTGGTGGAGACTTGTAG-ACATACGGAGGGGGTGGTGACGGAGA
1 AGGAGGTGGTGGAGACTTGTAGTA-GTAAGGAGGTGGTGGGGATGGTGA
* *
453083 TGGAGGTGGTGGAGACTTGTAGTAGTAGGGAGGTGG-GGGTGATGGTGA
1 AGGAGGTGGTGGAGACTTGTAGTAGTAAGGAGGTGGTGGG-GATGGTGA
* *
453131 AGGAGGTGGTGGAGACTTGTACTCGTAAGGAGGTGGTGG
1 AGGAGGTGGTGGAGACTTGTAGTAGTAAGGAGGTGGTGG
453170 AGGAGATTTG
Statistics
Matches: 527, Mismatches: 126, Indels: 43
0.76 0.18 0.06
Matches are distributed among these distances:
46 6 0.01
47 5 0.01
48 373 0.71
49 17 0.03
50 19 0.04
51 69 0.13
52 1 0.00
53 1 0.00
54 36 0.07
ACGTcount: A:0.20, C:0.06, G:0.48, T:0.26
Consensus pattern (48 bp):
AGGAGGTGGTGGAGACTTGTAGTAGTAAGGAGGTGGTGGGGATGGTGA
Found at i:452760 original size:150 final size:144
Alignment explanation
Indices: 452547--452869 Score: 412
Period size: 150 Copynumber: 2.2 Consensus size: 144
452537 ATGTTTCGGT
* *
452547 GGAGGTGGTGGAGACTGGTAGTAGTATGGAAGAGGTGGGGATGGAGATGGAGGTGGTGGAGACTT
1 GGAGGTGGTGGAGACTTGTAGTAGTATGGAAGAGGTGGGGATGGAGATGGAGGTGGAGGAGACTT
* * * *
452612 GTAATAGTAAGGAGGTGGTGGGGATGGGGAAGGTGGTGGTGGAGATTTATAGTAGTATGGAGGTG
66 GTAATAGTAAGGAGGTGGAGGAGATGGGGAAGGTGGTGGTGGAGATTTATAGTAATAAGGAGGTG
* *
452677 GTGGTGATGGAGAG
131 GTGGGGATGGAGAA
* * *
452691 GGAGGTGGAGGAGACTTGTAGTAGTATGGAGGAGGTGGTGATGGGGATGGAGGTGGAGGTGGAGG
1 GGAGGTGGTGGAGACTTGTAGTAGTATGGA--A-G-AG-G-TGGGGATGGAGATGGAGGTGGAGG
* * * * * *
452756 AGACTTGTAGTAGTATGGTGGTGGAGGAGATGGTGAAGGTGGTGGTGGGGATTTGTAGTAATAAG
60 AGACTTGTAATAGTAAGGAGGTGGAGGAGATGGGGAAGGTGGTGGTGGAGATTTATAGTAATAAG
*
452821 GAGGTGGTGGGGATGGTGAA
125 GAGGTGGTGGGGATGGAGAA
* *
452841 GGTGGTGGTGGAGACTTATAGTAGTATGG
1 GGAGGTGGTGGAGACTTGTAGTAGTATGG
452870 GGGCTGCTCC
Statistics
Matches: 152, Mismatches: 21, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
144 28 0.18
146 1 0.01
147 1 0.01
148 1 0.01
149 1 0.01
150 120 0.79
ACGTcount: A:0.23, C:0.02, G:0.51, T:0.24
Consensus pattern (144 bp):
GGAGGTGGTGGAGACTTGTAGTAGTATGGAAGAGGTGGGGATGGAGATGGAGGTGGAGGAGACTT
GTAATAGTAAGGAGGTGGAGGAGATGGGGAAGGTGGTGGTGGAGATTTATAGTAATAAGGAGGTG
GTGGGGATGGAGAA
Found at i:452896 original size:99 final size:99
Alignment explanation
Indices: 452793--452998 Score: 261
Period size: 99 Copynumber: 2.1 Consensus size: 99
452783 AGATGGTGAA
* * * * * *
452793 GGTGGTGGTGGGGATTTGTAGTA-ATAAGGAGGTGGTGGGGATGGTGAAGGTGGTGGTGGAGACT
1 GGTGGTGGTGGAGACTTGTAG-ACATAAGGAGGAGGTGGGGACGGAGAAGGAGGTGGTGGAGACT
* *
452857 TATAGTAGTATGGGGGCTGCTCCTCATGTTTTGGT
65 TATAGTAGTAAGGGGGCTGCTCCTCATGCTTTGGT
* * * *
452892 GGTGGTGGTGGAGACTTGTAGACGTACGGAGGAGGTGGTGACGGAGATGGAGGTGGTGGAGACTT
1 GGTGGTGGTGGAGACTTGTAGACATAAGGAGGAGGTGGGGACGGAGAAGGAGGTGGTGGAGACTT
* * *
452957 GTAGTAGTAAGGGGGTTGCTCCTCGTGCTTTGGT
66 ATAGTAGTAAGGGGGCTGCTCCTCATGCTTTGGT
452991 GGTGGTGG
1 GGTGGTGG
452999 AGACTTGTAG
Statistics
Matches: 91, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
98 1 0.01
99 90 0.99
ACGTcount: A:0.17, C:0.08, G:0.47, T:0.29
Consensus pattern (99 bp):
GGTGGTGGTGGAGACTTGTAGACATAAGGAGGAGGTGGGGACGGAGAAGGAGGTGGTGGAGACTT
ATAGTAGTAAGGGGGCTGCTCCTCATGCTTTGGT
Found at i:453139 original size:144 final size:146
Alignment explanation
Indices: 452796--453160 Score: 454
Period size: 144 Copynumber: 2.5 Consensus size: 146
452786 TGGTGAAGGT
* * * * *
452796 GGTGGTGGGGATTTGTAGTAATAAGGAGGTGGTGGG-GATGGTGAAGGTGGTGGTGGAGACTTAT
1 GGTGGTGGAGACTTGTAGTAGTAGGGAGGTGG-GGGTGATGGTGAAGGTGGTGGTGGAGACTTGT
* * *
452860 AGTAGTATGGGGGCTGCTCCTCATGTTTTGGTGGTGGTGGTGGAGACTTGTAGACGTACGGAGGA
65 AGTAGTAAGGGGGCTGCTCCTCATGTCTT-GTGGTGGTGGTGGAGACTTGTAGACATACGGAGGA
452925 GGTGGTGACGGAGATGGA
129 GGTGGTGACGGAGATGGA
* * ** * **
452943 GGTGGTGGAGACTTGTAGTAGTAAGGG-GGT--TGCTCCTCGTGCTTTGGTGGTGGTGGAGACTT
1 GGTGGTGGAGACTTGTAGTAGT-AGGGAGGTGGGGGTGATGGTG--AAGGTGGTGGTGGAGACTT
* *
453005 GTAGTAGTAAGGGGGTTGCTCCTCGTG-CTT-TGGTGGTGGTGGAGACTTGTAGACATACGGAGG
63 GTAGTAGTAAGGGGGCTGCTCCTCATGTCTTGTGGTGGTGGTGGAGACTTGTAGACATACGGAGG
*
453068 GGGTGGTGACGGAGATGGA
128 AGGTGGTGACGGAGATGGA
*
453087 GGTGGTGGAGACTTGTAGTAGTAGGGAGGTGGGGGTGATGGTGAAGGAGGTGGTGGAGACTTGTA
1 GGTGGTGGAGACTTGTAGTAGTAGGGAGGTGGGGGTGATGGTGAAGGTGGTGGTGGAGACTTGTA
* *
453152 CTCGTAAGG
66 GTAGTAAGG
453161 AGGTGGTGGA
Statistics
Matches: 183, Mismatches: 28, Indels: 17
0.80 0.12 0.07
Matches are distributed among these distances:
143 4 0.02
144 102 0.56
145 4 0.02
146 8 0.04
147 62 0.34
148 3 0.02
ACGTcount: A:0.18, C:0.08, G:0.47, T:0.27
Consensus pattern (146 bp):
GGTGGTGGAGACTTGTAGTAGTAGGGAGGTGGGGGTGATGGTGAAGGTGGTGGTGGAGACTTGTA
GTAGTAAGGGGGCTGCTCCTCATGTCTTGTGGTGGTGGTGGAGACTTGTAGACATACGGAGGAGG
TGGTGACGGAGATGGA
Found at i:455309 original size:21 final size:20
Alignment explanation
Indices: 455275--455316 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
455265 ATTTATATTA
*
455275 ATTTGATAAATTTAACAATT
1 ATTTGATAAATTTAAAAATT
*
455295 ATTTTATAAATTTTAAAAATT
1 ATTTGATAAA-TTTAAAAATT
455316 A
1 A
455317 ACTGATTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (20 bp):
ATTTGATAAATTTAAAAATT
Found at i:456938 original size:2 final size:2
Alignment explanation
Indices: 456933--456994 Score: 88
Period size: 2 Copynumber: 31.0 Consensus size: 2
456923 ATATACGTAC
* * * *
456933 AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT AC AT AC AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
456975 AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT
456995 GGAAACATTA
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:456942 original size:16 final size:16
Alignment explanation
Indices: 456930--456994 Score: 103
Period size: 16 Copynumber: 4.1 Consensus size: 16
456920 AATATATACG
456930 TACATATATATATATA
1 TACATATATATATATA
456946 TACATATATATATATA
1 TACATATATATATATA
* *
456962 TACATACAAATATATA
1 TACATATATATATATA
*
456978 TATATATATATATATA
1 TACATATATATATATA
456994 T
1 T
456995 GGAAACATTA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 44 1.00
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (16 bp):
TACATATATATATATA
Found at i:456946 original size:20 final size:18
Alignment explanation
Indices: 456921--456994 Score: 77
Period size: 18 Copynumber: 4.2 Consensus size: 18
456911 GGTTAGAGGA
456921 ATATATACGTAC-ATATAT
1 ATATATAC-TACAATATAT
456939 ATATATA-TACATATATAT
1 ATATATACTACA-ATATAT
456957 ATATATACATACAA-ATAT
1 ATATATAC-TACAATATAT
*
456975 ATATATA-TA-TATATAT
1 ATATATACTACAATATAT
456991 ATAT
1 ATAT
456995 GGAAACATTA
Statistics
Matches: 50, Mismatches: 1, Indels: 12
0.79 0.02 0.19
Matches are distributed among these distances:
15 1 0.02
16 13 0.26
18 31 0.62
19 1 0.02
20 4 0.08
ACGTcount: A:0.50, C:0.07, G:0.01, T:0.42
Consensus pattern (18 bp):
ATATATACTACAATATAT
Found at i:460573 original size:60 final size:60
Alignment explanation
Indices: 460485--460597 Score: 156
Period size: 60 Copynumber: 1.9 Consensus size: 60
460475 ATATTATTGG
**
460485 AATGTTCAAAAGTTTGGAGACTAATTTAGAATGGGAGTCATAGTTTAGGGATGGAATTAA
1 AATGTTCAAAAGTTTGGAGACTAATTTAGAATAAGAGTCATAGTTTAGGGATGGAATTAA
* * * *
460545 AATGTTCAAAAGTTTATGA-ACTACTTTAGATTAAGAGTCATAGTTTGGGGATG
1 AATGTTCAAAAGTTT-GGAGACTAATTTAGAATAAGAGTCATAGTTTAGGGATG
460598 TATGTTTCAG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
60 44 0.96
61 2 0.04
ACGTcount: A:0.35, C:0.06, G:0.25, T:0.34
Consensus pattern (60 bp):
AATGTTCAAAAGTTTGGAGACTAATTTAGAATAAGAGTCATAGTTTAGGGATGGAATTAA
Found at i:464937 original size:2 final size:2
Alignment explanation
Indices: 464930--464954 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
464920 TAATAAAAAT
464930 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
464955 TGGTGTTGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:467540 original size:4 final size:4
Alignment explanation
Indices: 467533--467586 Score: 108
Period size: 4 Copynumber: 13.5 Consensus size: 4
467523 ACACACATGC
467533 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
467581 ACAT AC
1 ACAT AC
467587 CATGTTACTC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 50 1.00
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:468249 original size:26 final size:26
Alignment explanation
Indices: 468193--468242 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
468183 TAATCTTTCT
*
468193 TTTAAAACTCTTTTAGATTTACACAA
1 TTTAAAACTCTTTTAGACTTACACAA
* *
468219 TTTAAAATTGTTTTAGACTTACAC
1 TTTAAAACTCTTTTAGACTTACAC
468243 GTATTAACTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.36, C:0.14, G:0.06, T:0.44
Consensus pattern (26 bp):
TTTAAAACTCTTTTAGACTTACACAA
Found at i:468391 original size:4 final size:4
Alignment explanation
Indices: 468382--468739 Score: 702
Period size: 4 Copynumber: 90.0 Consensus size: 4
468372 TTCAGTTCAA
468382 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
468430 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
468478 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
468526 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
468574 TATG TATG TATG TATG TATG TA-- TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
468620 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
468668 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
468716 TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG
468740 GGTGAACAAA
Statistics
Matches: 352, Mismatches: 0, Indels: 4
0.99 0.00 0.01
Matches are distributed among these distances:
2 2 0.01
4 350 0.99
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:470892 original size:21 final size:20
Alignment explanation
Indices: 470876--471204 Score: 97
Period size: 21 Copynumber: 15.6 Consensus size: 20
470866 GCGTTGCATT
* *
470876 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTT-ACAG
470897 TCGCGTTGCGATAGTCTACAG
1 TCGCGTTGCGATAGT-TACAG
470918 T-GTCGTTGCGATAGTCTACAG
1 TCG-CGTTGCGATAGT-TACAG
* * *
470939 T-GTCGTTGCGAT-TTTCCATT
1 TCG-CGTTGCGATAGTTACA-G
470959 TCGCGTTGCGATAGTCTACAG
1 TCGCGTTGCGATAGT-TACAG
* * *
470980 T-GTCGTTGCGAT-TTTCCATT
1 TCG-CGTTGCGATAGTTACA-G
* * *
471000 TCGCGTTGCGATAGATGAAAA
1 TCGCGTTGCGATAG-TTACAG
*
471021 TCACGTTGCGATAGTGTACAG
1 TCGCGTTGCGATAGT-TACAG
* * *
471042 TCATTGCGATCGTTGCGAT-TTTCCATT
1 ----T-CG--CGTTGCGATAGTTACA-G
*
471069 TCGCGTTGCGATAGTTGGA-AA
1 TCGCGTTGCGATAGTT--ACAG
471090 TCGCGTTGCGATAGTGTACAG
1 TCGCGTTGCGATAGT-TACAG
* * * *
471111 T-GTCATTGCGAT-TTTCCATC
1 TCG-CGTTGCGATAGTTACA-G
*
471131 TCGCATTGCGATAGTGTACAG
1 TCGCGTTGCGATAGT-TACAG
* * *
471152 T-GTCGTTGCGAT-TTTCCATT
1 TCG-CGTTGCGATAGTTACA-G
471172 TCGCGTTGCGATAGTCTACAG
1 TCGCGTTGCGATAGT-TACAG
471193 T-GTCGTTGCGAT
1 TCG-CGTTGCGAT
471205 TTTCCAAATT
Statistics
Matches: 230, Mismatches: 42, Indels: 72
0.67 0.12 0.21
Matches are distributed among these distances:
19 12 0.05
20 60 0.26
21 126 0.55
22 16 0.07
23 1 0.00
25 1 0.00
26 4 0.02
27 1 0.00
28 9 0.04
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.35
Consensus pattern (20 bp):
TCGCGTTGCGATAGTTACAG
Found at i:470967 original size:20 final size:20
Alignment explanation
Indices: 470942--471011 Score: 72
Period size: 20 Copynumber: 3.5 Consensus size: 20
470932 TCTACAGTGT
470942 CGTTGCGATTTTCCATTTCG
1 CGTTGCGATTTTCCATTTCG
* * *
470962 CGTTGCGATAGTCTACA-GT-G
1 CGTTGCGAT--TTTCCATTTCG
470982 TCGTTGCGATTTTCCATTTCG
1 -CGTTGCGATTTTCCATTTCG
471003 CGTTGCGAT
1 CGTTGCGAT
471012 AGATGAAAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
19 4 0.10
20 20 0.51
21 11 0.28
22 4 0.10
ACGTcount: A:0.13, C:0.23, G:0.24, T:0.40
Consensus pattern (20 bp):
CGTTGCGATTTTCCATTTCG
Found at i:470974 original size:41 final size:41
Alignment explanation
Indices: 470921--471229 Score: 270
Period size: 41 Copynumber: 7.4 Consensus size: 41
470911 TCTACAGTGT
470921 CGTTGCGATAGTCTACAGTGTCGTTGCGATTTTCCATTTCG
1 CGTTGCGATAGTCTACAGTGTCGTTGCGATTTTCCATTTCG
470962 CGTTGCGATAGTCTACAGTGTCGTTGCGATTTTCCATTTCG
1 CGTTGCGATAGTCTACAGTGTCGTTGCGATTTTCCATTTCG
* * * ** * *
471003 CGTTGCGATAGAT-GAAAATCACGTTGCGATAGTGTACAGTCATTGCG
1 CGTTGCGATAG-TCTACAGTGTCGTTGCGAT--T-TTC---CATTTCG
* * * * ** **
471050 ATCGTTGCGAT--TTTCCA-TTTCGCGTTGCGATAGTTGGAAATCG
1 --CGTTGCGATAGTCTACAGTGT--CGTTGCGAT-TTTCCATTTCG
* * *
471093 CGTTGCGATAGTGTACAGTGTCATTGCGATTTTCCATCTCG
1 CGTTGCGATAGTCTACAGTGTCGTTGCGATTTTCCATTTCG
* *
471134 CATTGCGATAGTGTACAGTGTCGTTGCGATTTTCCATTTCG
1 CGTTGCGATAGTCTACAGTGTCGTTGCGATTTTCCATTTCG
*
471175 CGTTGCGATAGTCTACAGTGTCGTTGCGATTTTCCAAATT--
1 CGTTGCGATAGTCTACAGTGTCGTTGCGATTTTCC-ATTTCG
471215 CGTTGCGATAGTCTA
1 CGTTGCGATAGTCTA
471230 TAGTAAATTA
Statistics
Matches: 217, Mismatches: 35, Indels: 33
0.76 0.12 0.12
Matches are distributed among these distances:
40 15 0.07
41 150 0.69
42 12 0.06
43 8 0.04
44 4 0.02
46 3 0.01
47 7 0.03
48 9 0.04
49 9 0.04
ACGTcount: A:0.19, C:0.20, G:0.25, T:0.36
Consensus pattern (41 bp):
CGTTGCGATAGTCTACAGTGTCGTTGCGATTTTCCATTTCG
Found at i:471028 original size:62 final size:62
Alignment explanation
Indices: 470872--471145 Score: 293
Period size: 62 Copynumber: 4.3 Consensus size: 62
470862 ATTCGCGTTG
* *
470872 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATAGTCTACAGTGTCGTTGCGATAGTCTA
1 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATAGTCTACAGTGTCGTTGCGAT--TTTC
* * ** **
470936 CA-GT-GTCGTTGCGAT-TTTCCATTTCGCGTTGCGATAGTCTACAGTGTCGTTGCGATTTTC
1 CATTTCG-CGTTGCGATAGTTGAAAATCGCGTTGCGATAGTCTACAGTGTCGTTGCGATTTTC
* * *
470996 CATTTCGCGTTGCGATAGATGAAAATCACGTTGCGATAGTGTACAGTCATTGCGATCGTTGCGAT
1 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATAGTCTACAG----T--G-TCGTTGCGAT
471061 TTTC
59 TTTC
* * *
471065 CATTTCGCGTTGCGATAGTTGGAAATCGCGTTGCGATAGTGTACAGTGTCATTGCGATTTTC
1 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATAGTCTACAGTGTCGTTGCGATTTTC
* *
471127 CATCTCGCATTGCGATAGT
1 CATTTCGCGTTGCGATAGT
471146 GTACAGTGTC
Statistics
Matches: 176, Mismatches: 23, Indels: 24
0.79 0.10 0.11
Matches are distributed among these distances:
60 4 0.02
61 10 0.06
62 89 0.51
63 11 0.06
64 2 0.01
65 1 0.01
66 1 0.01
68 1 0.01
69 57 0.32
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.35
Consensus pattern (62 bp):
CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATAGTCTACAGTGTCGTTGCGATTTTC
Found at i:471097 original size:69 final size:70
Alignment explanation
Indices: 470982--471122 Score: 239
Period size: 69 Copynumber: 2.0 Consensus size: 70
470972 GTCTACAGTG
470982 TCGTTGCGATTTTCCATTTCGCGTTGCGATAGATGAAAATCACGTTGCGATAGTGTACA-GTCAT
1 TCGTTGCGATTTTCCATTTCGCGTTGCGATAGATGAAAATCACGTTGCGATAGTGTACAGGTCAT
471046 TGCGA
66 TGCGA
* * *
471051 TCGTTGCGATTTTCCATTTCGCGTTGCGATAGTTGGAAATCGCGTTGCGATAGTGTACAGTGTCA
1 TCGTTGCGATTTTCCATTTCGCGTTGCGATAGATGAAAATCACGTTGCGATAGTGTACAG-GTCA
471116 TTGCGA
65 TTGCGA
471122 T
1 T
471123 TTTCCATCTC
Statistics
Matches: 67, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
69 56 0.84
71 11 0.16
ACGTcount: A:0.21, C:0.18, G:0.26, T:0.35
Consensus pattern (70 bp):
TCGTTGCGATTTTCCATTTCGCGTTGCGATAGATGAAAATCACGTTGCGATAGTGTACAGGTCAT
TGCGA
Found at i:471324 original size:6 final size:6
Alignment explanation
Indices: 471313--471368 Score: 112
Period size: 6 Copynumber: 9.3 Consensus size: 6
471303 GACACGTATT
471313 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
471361 ACCACG AC
1 ACCACG AC
471369 GAGAAATCCG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 50 1.00
ACGTcount: A:0.34, C:0.50, G:0.16, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:474590 original size:14 final size:14
Alignment explanation
Indices: 474571--474603 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
474561 CGCTGGGCAT
474571 CCGAGGCCATCCGA
1 CCGAGGCCATCCGA
474585 CCGAGGCCATCCGA
1 CCGAGGCCATCCGA
*
474599 ACGAG
1 CCGAG
474604 CTATGCGAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.24, C:0.39, G:0.30, T:0.06
Consensus pattern (14 bp):
CCGAGGCCATCCGA
Found at i:474637 original size:33 final size:33
Alignment explanation
Indices: 474585--474647 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 33
474575 GGCCATCCGA
*
474585 CCGAGGCCATCCGAACGAGCTATGCGAGGGCAT
1 CCGAGGCCAACCGAACGAGCTATGCGAGGGCAT
* *
474618 CCGAGGGCAACCGAGCGAGCTATGCGAGGG
1 CCGAGGCCAACCGAACGAGCTATGCGAGGG
474648 TGGCAACCGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.24, C:0.29, G:0.38, T:0.10
Consensus pattern (33 bp):
CCGAGGCCAACCGAACGAGCTATGCGAGGGCAT
Found at i:474699 original size:29 final size:29
Alignment explanation
Indices: 474666--474751 Score: 163
Period size: 29 Copynumber: 3.0 Consensus size: 29
474656 GAGCGAGGGT
*
474666 AGGTCGCCCGGAGTACATGGCGACCTACA
1 AGGTCGCCCGGAGTGCATGGCGACCTACA
474695 AGGTCGCCCGGAGTGCATGGCGACCTACA
1 AGGTCGCCCGGAGTGCATGGCGACCTACA
474724 AGGTCGCCCGGAGTGCATGGCGACCTAC
1 AGGTCGCCCGGAGTGCATGGCGACCTAC
474752 GGGCTACCCT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 56 1.00
ACGTcount: A:0.21, C:0.31, G:0.34, T:0.14
Consensus pattern (29 bp):
AGGTCGCCCGGAGTGCATGGCGACCTACA
Found at i:474820 original size:33 final size:33
Alignment explanation
Indices: 474763--474840 Score: 106
Period size: 33 Copynumber: 2.4 Consensus size: 33
474753 GGCTACCCTT
* *
474763 GCTCGGTTG--CTCGGATTCCCTCGCATAGCTC
1 GCTCGGTTGCCCTCGGATGCCATCGCATAGCTC
474794 GCTCGGTTGCCCTCGGATGCCATCGCATAGCTC
1 GCTCGGTTGCCCTCGGATGCCATCGCATAGCTC
* *
474827 GTTCGGATGCCCTC
1 GCTCGGTTGCCCTC
474841 ACATAGCTCG
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
31 9 0.22
33 32 0.78
ACGTcount: A:0.10, C:0.36, G:0.27, T:0.27
Consensus pattern (33 bp):
GCTCGGTTGCCCTCGGATGCCATCGCATAGCTC
Found at i:474832 original size:23 final size:23
Alignment explanation
Indices: 474806--474858 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
474796 TCGGTTGCCC
*
474806 TCGGATGCCATCGCATAGCTCGT
1 TCGGATGCCATCACATAGCTCGT
*
474829 TCGGATGCCCTCACATAGCTCGT
1 TCGGATGCCATCACATAGCTCGT
474852 TCGGATG
1 TCGGATG
474859 GCCTCGGATG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.17, C:0.30, G:0.26, T:0.26
Consensus pattern (23 bp):
TCGGATGCCATCACATAGCTCGT
Found at i:474877 original size:20 final size:20
Alignment explanation
Indices: 474852--474905 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
474842 CATAGCTCGT
474852 TCGGATGGCCTCGGATGCTC
1 TCGGATGGCCTCGGATGCTC
* *
474872 TCGGATGGCATCGGATGCTT
1 TCGGATGGCCTCGGATGCTC
474892 TCGGATGGCCTCGG
1 TCGGATGGCCTCGG
474906 TCGGATGGCC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.11, C:0.26, G:0.37, T:0.26
Consensus pattern (20 bp):
TCGGATGGCCTCGGATGCTC
Found at i:474911 original size:14 final size:14
Alignment explanation
Indices: 474892--474919 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
474882 TCGGATGCTT
474892 TCGGATGGCCTCGG
1 TCGGATGGCCTCGG
474906 TCGGATGGCCTCGG
1 TCGGATGGCCTCGG
474920 ATGCTCAGCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.07, C:0.29, G:0.43, T:0.21
Consensus pattern (14 bp):
TCGGATGGCCTCGG
Found at i:474922 original size:10 final size:10
Alignment explanation
Indices: 474852--474905 Score: 58
Period size: 10 Copynumber: 5.4 Consensus size: 10
474842 CATAGCTCGT
474852 TCGGATGGCC
1 TCGGATGGCC
474862 TCGGAT-GCTC
1 TCGGATGGC-C
*
474872 TCGGATGGCA
1 TCGGATGGCC
*
474882 TCGGAT-GCTT
1 TCGGATGGC-C
474892 TCGGATGGCC
1 TCGGATGGCC
474902 TCGG
1 TCGG
474906 TCGGATGGCC
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
9 4 0.11
10 29 0.78
11 4 0.11
ACGTcount: A:0.11, C:0.26, G:0.37, T:0.26
Consensus pattern (10 bp):
TCGGATGGCC
Found at i:475266 original size:29 final size:29
Alignment explanation
Indices: 475223--475340 Score: 209
Period size: 29 Copynumber: 4.1 Consensus size: 29
475213 AACAGCCCAC
* *
475223 AGGTCGCTCGCATGCCATGGCGACCTCCA
1 AGGTCGCCCGGATGCCATGGCGACCTCCA
475252 AGGTCGCCCGGATGCCATGGCGACCTCCA
1 AGGTCGCCCGGATGCCATGGCGACCTCCA
475281 AGGTCGCCCGGATGCCATGGCGACCTCCA
1 AGGTCGCCCGGATGCCATGGCGACCTCCA
*
475310 AGGTCGCTCGGATGCCATGGCGACCTCCA
1 AGGTCGCCCGGATGCCATGGCGACCTCCA
475339 AG
1 AG
475341 CTCACTGTAG
Statistics
Matches: 86, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 86 1.00
ACGTcount: A:0.18, C:0.36, G:0.31, T:0.15
Consensus pattern (29 bp):
AGGTCGCCCGGATGCCATGGCGACCTCCA
Found at i:475836 original size:29 final size:29
Alignment explanation
Indices: 475804--475859 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
475794 ATCGCTACAC
*
475804 TTTTAAAAATTAT-AAAATGATCATTAATT
1 TTTTAAAAATT-TCAAAATAATCATTAATT
* *
475833 TTTTTAAAGTTTCAAAATAATCATTAA
1 TTTTAAAAATTTCAAAATAATCATTAA
475860 ATTTATCAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 1 0.04
29 22 0.96
ACGTcount: A:0.46, C:0.05, G:0.04, T:0.45
Consensus pattern (29 bp):
TTTTAAAAATTTCAAAATAATCATTAATT
Found at i:478602 original size:21 final size:21
Alignment explanation
Indices: 478575--478713 Score: 113
Period size: 20 Copynumber: 6.8 Consensus size: 21
478565 CGCATTGCAT
478575 TTCGCGTTGCGATAGTTGAAA
1 TTCGCGTTGCGATAGTTGAAA
* * ** *
478596 ATCGCGTTGCGAT-TTTCCAT
1 TTCGCGTTGCGATAGTTGAAA
478616 TTCGCGTTGCGATAGTTGAAA
1 TTCGCGTTGCGATAGTTGAAA
* * * ** *
478637 ATCGTGTTGCGAT-TTTCCAT
1 TTCGCGTTGCGATAGTTGAAA
*
478657 TTCGTGTTGCGATAGTTGAAA
1 TTCGCGTTGCGATAGTTGAAA
* ** *
478678 TTCGCGTTGCGAT-TTTCCAT
1 TTCGCGTTGCGATAGTTGAAA
478698 TTCGCGTTGCGATAGT
1 TTCGCGTTGCGATAGT
478714 CTACAGTTGT
Statistics
Matches: 88, Mismatches: 27, Indels: 6
0.73 0.22 0.05
Matches are distributed among these distances:
20 46 0.52
21 42 0.48
ACGTcount: A:0.18, C:0.18, G:0.25, T:0.39
Consensus pattern (21 bp):
TTCGCGTTGCGATAGTTGAAA
Found at i:478617 original size:41 final size:41
Alignment explanation
Indices: 478572--478713 Score: 257
Period size: 41 Copynumber: 3.5 Consensus size: 41
478562 ATTCGCATTG
478572 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
1 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
*
478613 CATTTCGCGTTGCGATAGTTGAAAATCGTGTTGCGATTTTC
1 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
* *
478654 CATTTCGTGTTGCGATAGTTGAAATTCGCGTTGCGATTTTC
1 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
478695 CATTTCGCGTTGCGATAGT
1 CATTTCGCGTTGCGATAGT
478714 CTACAGTTGT
Statistics
Matches: 96, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 96 1.00
ACGTcount: A:0.18, C:0.18, G:0.25, T:0.39
Consensus pattern (41 bp):
CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
Found at i:478753 original size:82 final size:80
Alignment explanation
Indices: 478579--478760 Score: 249
Period size: 82 Copynumber: 2.2 Consensus size: 80
478569 TTGCATTTCG
478579 CGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGTTGAAAATCGTGT
1 CGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGTTGAAAATCGTGT
*
478644 TGCGATTTTCCATTT
66 TGCGATTTTCCAATT
* * * *
478659 CGTGTTGCGATAGTTGAAATTCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGTCT-ACAGTTG
1 C--GTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGT-TGAAAATCG
478723 TCGTTGCGATTTTCCAAATT
63 T-GTTGCGATTTTCC-AATT
* *
478743 CGTTGTGATAGTTAAAAA
1 CGTTGCGATAGTTGAAAA
478761 AAAGATTTTG
Statistics
Matches: 89, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
80 1 0.01
82 70 0.79
83 14 0.16
84 4 0.04
ACGTcount: A:0.21, C:0.17, G:0.24, T:0.38
Consensus pattern (80 bp):
CGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCATTTCGCGTTGCGATAGTTGAAAATCGTGT
TGCGATTTTCCAATT
Found at i:478842 original size:6 final size:6
Alignment explanation
Indices: 478831--478870 Score: 62
Period size: 6 Copynumber: 6.7 Consensus size: 6
478821 GACACGTATT
**
478831 ACCACG ACCACG ACCACG ACCACG ACCAAT ACCACG ACCA
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCA
478871 GAGACGAGAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.38, C:0.47, G:0.12, T:0.03
Consensus pattern (6 bp):
ACCACG
Found at i:479384 original size:6 final size:6
Alignment explanation
Indices: 479373--479401 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
479363 GTCTCGTCTC
479373 TGGTCG TGGTCG TGGTCG TGGTCG TGGTC
1 TGGTCG TGGTCG TGGTCG TGGTCG TGGTC
479402 ATACGTGTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.17, G:0.48, T:0.34
Consensus pattern (6 bp):
TGGTCG
Found at i:479546 original size:20 final size:20
Alignment explanation
Indices: 479493--479552 Score: 68
Period size: 20 Copynumber: 2.9 Consensus size: 20
479483 ACAACGAATT
479493 TGGAAAATCGCAACGAC-AAC
1 TGGAAAATCGCAACG-CGAAC
**
479513 TGTAGACTATCGCAACGCGAAC
1 TG--GAAAATCGCAACGCGAAC
479535 TGGAAAATCGCAACGCGA
1 TGGAAAATCGCAACGCGA
479553 TTTTCAACTA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
20 16 0.48
21 1 0.03
22 16 0.48
ACGTcount: A:0.38, C:0.25, G:0.23, T:0.13
Consensus pattern (20 bp):
TGGAAAATCGCAACGCGAAC
Found at i:482954 original size:20 final size:21
Alignment explanation
Indices: 482929--482980 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
482919 TTTTCCCAAT
*
482929 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
**
482949 TCGCAATGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
482970 TCGCAATGCGA
1 TCGCAATGCGA
482981 TACTGACTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.19
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:482972 original size:21 final size:20
Alignment explanation
Indices: 482929--483016 Score: 72
Period size: 20 Copynumber: 4.3 Consensus size: 20
482919 TTTTCCCAAT
*
482929 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATAAGAAAA
**
482949 TCGCAATGCGAATTGGGAAAA
1 TCGCAATGCGAA-TAAGAAAA
* **
482970 TCGCAATGCG-ATACTGACTA
1 TCGCAATGCGAATA-AGAAAA
482990 TCGCAATGCGATAATAA-AAAA
1 TCGCAATGCG--AATAAGAAAA
483011 TCGCAA
1 TCGCAA
483017 CGAGATACTT
Statistics
Matches: 53, Mismatches: 10, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
19 1 0.02
20 26 0.49
21 23 0.43
23 3 0.06
ACGTcount: A:0.41, C:0.18, G:0.20, T:0.20
Consensus pattern (20 bp):
TCGCAATGCGAATAAGAAAA
Found at i:482994 original size:20 final size:20
Alignment explanation
Indices: 482969--483063 Score: 91
Period size: 20 Copynumber: 4.7 Consensus size: 20
482959 AATTGGGAAA
*
482969 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* * * **
482989 ATCGCAATGCGATAATAAAAA
1 ATCGCAACGCGATACT-GACT
* *
483010 ATCGCAACGAGATACTTACT
1 ATCGCAACGCGATACTGACT
*
483030 TTCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
*
483050 TTCGCAACGCGATA
1 ATCGCAACGCGATA
483064 ATACATAATC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 47 0.77
21 14 0.23
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:483011 original size:41 final size:41
Alignment explanation
Indices: 482966--483043 Score: 111
Period size: 41 Copynumber: 1.9 Consensus size: 41
482956 GCGAATTGGG
* * *
482966 AAAATCGCAATGCGATACTGACTATCGCAATGCGATAATAA
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATAATAA
* *
483007 AAAATCGCAACGAGATACTTACTTTCGCAACGCGATA
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATA
483044 CTGACTTTCG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 32 1.00
ACGTcount: A:0.40, C:0.22, G:0.17, T:0.22
Consensus pattern (41 bp):
AAAATCGCAACGAGATACTGACTATCGCAACGCGATAATAA
Found at i:483596 original size:20 final size:20
Alignment explanation
Indices: 483573--483615 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
483563 GATAGTCGAA
483573 TTCGCGTTACGATTTTCATT
1 TTCGCGTTACGATTTTCATT
*
483593 TTCGTGTTACGATTTTCATT
1 TTCGCGTTACGATTTTCATT
483613 TTC
1 TTC
483616 AGAAACTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.14, C:0.19, G:0.14, T:0.53
Consensus pattern (20 bp):
TTCGCGTTACGATTTTCATT
Found at i:484951 original size:18 final size:18
Alignment explanation
Indices: 484930--484974 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
484920 TCCACTTCGG
*
484930 GAGCCATCACCTCGCCCA
1 GAGCCATCACCTCACCCA
*
484948 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
484966 GAGCCATCA
1 GAGCCATCA
484975 TCTGATCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.27, C:0.44, G:0.16, T:0.13
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:485510 original size:19 final size:20
Alignment explanation
Indices: 485456--485522 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 20
485446 TAGTTTACTT
* *
485456 TCGCAACACGAAAATGACTA
1 TCGCAACGCGGAAATGACTA
*
485476 TCGCAACGCGGAAATGGCTA
1 TCGCAACGCGGAAATGACTA
* **
485496 TCGCAATGC-GAAATGAAAA
1 TCGCAACGCGGAAATGACTA
485515 TCGCAACG
1 TCGCAACG
485523 ACAAAATCGC
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
19 14 0.36
20 25 0.64
ACGTcount: A:0.39, C:0.24, G:0.22, T:0.15
Consensus pattern (20 bp):
TCGCAACGCGGAAATGACTA
Found at i:485530 original size:14 final size:14
Alignment explanation
Indices: 485511--485568 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
485501 ATGCGAAATG
*
485511 AAAATCGCAACGAC
1 AAAATCGCAACGAA
485525 AAAATCGCAACGCGAA
1 AAAATCGCAA--CGAA
485541 ATGAAATCGCAACGAA
1 A--AAATCGCAACGAA
485557 AAAATCGCAACG
1 AAAATCGCAACG
485569 CGAAATGAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
14 21 0.54
16 9 0.23
18 9 0.23
ACGTcount: A:0.50, C:0.24, G:0.17, T:0.09
Consensus pattern (14 bp):
AAAATCGCAACGAA
Found at i:485553 original size:32 final size:33
Alignment explanation
Indices: 485495--485585 Score: 157
Period size: 32 Copynumber: 2.8 Consensus size: 33
485485 GGAAATGGCT
* *
485495 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGAAAAA
485528 ATCGCAACGCGAAATG-AAATCGCAACGAAAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGAAAAA
485560 ATCGCAACGCGAAATGAAAATCGCAA
1 ATCGCAACGCGAAATGAAAATCGCAA
485586 TGCGATTTGT
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
32 31 0.56
33 24 0.44
ACGTcount: A:0.48, C:0.22, G:0.19, T:0.11
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAACGAAAAA
Found at i:485579 original size:19 final size:19
Alignment explanation
Indices: 485456--485590 Score: 94
Period size: 19 Copynumber: 7.6 Consensus size: 19
485446 TAGTTTACTT
* **
485456 TCGCAACACGAAAATGACTA
1 TCGCAACGCG-AAATGAAAA
***
485476 TCGCAACGCGGAAATGGCTA
1 TCGCAACGC-GAAATGAAAA
*
485496 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
485515 TCGCAA--CG--A-CAAAA
1 TCGCAACGCGAAATGAAAA
485529 TCGCAACGCGAAATG-AAA
1 TCGCAACGCGAAATGAAAA
485547 TCGCAA--CG-AA--AAAA
1 TCGCAACGCGAAATGAAAA
485561 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
485580 TCGCAATGCGA
1 TCGCAACGCGA
485591 TTTGTGTTTC
Statistics
Matches: 94, Mismatches: 9, Indels: 25
0.73 0.07 0.20
Matches are distributed among these distances:
14 19 0.20
15 3 0.03
16 6 0.06
17 4 0.04
18 10 0.11
19 27 0.29
20 24 0.26
21 1 0.01
ACGTcount: A:0.44, C:0.23, G:0.21, T:0.13
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:485621 original size:14 final size:14
Alignment explanation
Indices: 485602--485659 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
485592 TTGTGTTTCA
485602 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
485616 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
485632 CGCGTTGCGATTTTGT
1 --CGTTGCGATTTTGT
485648 CGTTGCGATTTT
1 CGTTGCGATTTT
485660 CATTTCGCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 23 0.61
16 4 0.11
18 11 0.29
ACGTcount: A:0.09, C:0.17, G:0.26, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:485641 original size:32 final size:33
Alignment explanation
Indices: 485597--485675 Score: 133
Period size: 32 Copynumber: 2.4 Consensus size: 33
485587 GCGATTTGTG
*
485597 TTTCACGTTGCGATTTTGTCGTTGCGA-TTTCA
1 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
485629 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
*
485662 TTTCGCATTGCGAT
1 TTTCGCGTTGCGAT
485676 AGCCATTTCC
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
32 26 0.59
33 18 0.41
ACGTcount: A:0.11, C:0.19, G:0.23, T:0.47
Consensus pattern (33 bp):
TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
Found at i:485674 original size:19 final size:19
Alignment explanation
Indices: 485616--485733 Score: 95
Period size: 20 Copynumber: 6.4 Consensus size: 19
485606 GCGATTTTGT
485616 CGTTGCGA-TTTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
485634 CGTTGCGA-TTT--TGT--
1 CGTTGCGATTTTCATTTCG
485648 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
* ***
485667 CATTGCGATAGCCATTTCCG
1 CGTTGCGATTTTCATTT-CG
**
485687 CGTTGCGATAGTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
485706 CGTTGCGATTTTAAGTTTCG
1 CGTTGCGATTTTCA-TTTCG
*
485726 TGTTGCGA
1 CGTTGCGA
485734 AAGTAAACTA
Statistics
Matches: 81, Mismatches: 12, Indels: 12
0.77 0.11 0.11
Matches are distributed among these distances:
14 8 0.10
15 3 0.04
16 2 0.02
17 2 0.02
18 11 0.14
19 26 0.32
20 29 0.36
ACGTcount: A:0.14, C:0.20, G:0.25, T:0.42
Consensus pattern (19 bp):
CGTTGCGATTTTCATTTCG
Found at i:487545 original size:14 final size:14
Alignment explanation
Indices: 487512--487547 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
487502 GATTGTTTAA
487512 TTGATTTGTAAAAG
1 TTGATTTGTAAAAG
*
487526 -TGATTTGTAAATG
1 TTGATTTGTAAAAG
487539 TTGATTTGT
1 TTGATTTGT
487548 TTAATTGACG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 12 0.60
14 8 0.40
ACGTcount: A:0.28, C:0.00, G:0.22, T:0.50
Consensus pattern (14 bp):
TTGATTTGTAAAAG
Done.