genome.fa.s7842.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007842.1 Hibiscus syriacus cultivar Beakdansim tig00110196_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  183801

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9226--9259	10	3.4	10	87	0	50	73	0	5	20	1.04
10222--10275	22	2.5	22	90	0	90	61	5	12	20	1.52
12633--12707	20	3.7	20	75	10	62	54	9	0	36	1.33
12658--12692	11	3.0	11	91	8	52	51	8	0	40	1.33
15725--15750	2	13.0	2	100	0	52	50	0	0	50	1.00
17441--17489	25	1.9	25	87	4	71	55	4	0	40	1.19
17536--17580	23	2.0	23	82	8	56	57	4	2	35	1.31
30756--30850	30	3.2	30	79	8	104	22	43	8	26	1.81
30814--30874	24	2.5	24	83	0	77	24	42	8	24	1.82
30833--30904	30	2.4	30	100	0	144	23	44	8	23	1.80
30780--30905	54	2.3	55	81	5	132	23	42	8	24	1.82
30814--30905	24	3.6	24	75	16	76	25	42	8	23	1.82
33462--33517	24	2.3	24	78	0	67	23	41	8	26	1.84
41590--41634	21	2.3	18	82	14	54	46	2	26	24	1.64
44295--44368	23	3.2	24	76	16	75	44	18	10	25	1.82
44198--44379	85	2.1	85	79	2	195	47	17	11	23	1.80
48369--48422	10	5.1	10	74	12	54	9	9	18	62	1.51
48346--48399	23	2.5	22	79	8	58	12	7	14	64	1.47
48376--48422	23	2.0	23	91	0	76	10	8	17	63	1.49
59415--60271	231	3.8	230	86	3	1153	42	15	11	29	1.83
74479--74636	76	2.1	76	93	2	273	25	25	12	36	1.90
74720--74744	12	2.1	12	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74949--74985	18	2.1	18	100	0	74	54	0	0	45	1.00
75647--75706	18	3.2	18	90	4	84	45	13	5	36	1.65
76441--76537	31	3.1	31	75	1	86	38	8	9	44	1.67
76797--77016	109	2.0	109	96	0	404	31	13	13	42	1.82
81935--81997	33	2.0	31	84	12	83	33	3	7	55	1.45
84573--84630	2	31.0	2	78	13	61	56	0	0	43	0.99
85573--85627	22	2.6	22	94	5	96	60	12	3	23	1.49
89813--89953	61	2.4	61	78	11	159	47	2	9	39	1.52
92905--92961	26	2.2	26	100	0	114	49	8	3	38	1.51
92905--92971	26	2.6	26	92	2	100	50	7	5	35	1.55
94878--95211	169	2.0	169	86	2	465	32	19	13	34	1.91
102628--102669	21	2.0	21	100	0	84	42	0	19	38	1.51
104534--104578	16	2.8	16	89	0	72	24	20	11	44	1.83
104851--104896	23	2.0	24	91	4	76	47	0	2	50	1.13
104856--104906	23	2.2	23	82	0	66	52	0	1	45	1.12
110386--110419	17	2.0	17	88	11	52	52	0	8	38	1.33
110984--111024	20	2.0	20	86	9	57	36	12	7	43	1.70
112828--112872	19	2.3	20	81	11	58	46	2	0	51	1.13
115645--115692	21	2.3	21	96	0	87	27	18	12	41	1.86
119655--119827	75	2.3	74	89	1	256	21	24	30	23	1.99
119655--119832	74	2.4	75	89	0	259	21	24	29	24	1.99
122451--122513	20	2.9	21	79	9	65	15	25	34	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127322--127787	106	4.4	106	92	1	731	23	18	25	33	1.97
131722--131790	8	8.4	8	75	12	50	73	5	2	17	1.15
132104--132159	19	2.9	19	100	0	112	14	37	26	21	1.92
132164--132250	33	2.5	32	76	16	84	29	13	28	27	1.94
143904--143933	13	2.2	13	94	5	51	83	6	10	0	0.81
147802--147887	31	2.8	32	84	8	106	37	2	9	51	1.47
147808--147929	31	3.9	30	75	11	86	36	5	10	47	1.62
161715--161748	17	1.9	18	88	5	52	47	8	5	38	1.59
164010--164186	54	3.3	54	77	10	191	30	23	24	22	1.99
165156--165214	21	2.8	20	85	10	73	1	27	1	69	1.07
165156--165214	9	6.6	9	77	13	59	1	27	1	69	1.07
165156--165214	12	4.9	12	82	12	59	1	27	1	69	1.07
167220--167261	14	2.9	14	85	3	57	76	0	2	21	0.90
167304--167380	37	2.1	37	85	7	104	45	3	2	48	1.34
167484--167597	36	3.1	36	79	5	104	42	6	4	47	1.48
167534--167641	36	2.9	37	81	2	128	43	6	6	43	1.56
168271--169138	105	8.3	105	89	3	1238	22	18	26	33	1.96
168271--169138	205	4.1	207	90	3	1251	22	18	26	33	1.96
168271--169138	310	2.8	311	90	4	1309	22	18	26	33	1.96
169743--169900	68	2.4	66	81	6	176	35	9	22	32	1.86
169744--170207	73	6.7	67	75	11	184	39	12	20	27	1.88
169875--170227	36	10.0	36	80	11	390	41	13	19	25	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
170055--170111	15	3.5	15	71	17	51	40	15	21	22	1.91
170013--170227	73	3.0	73	93	4	366	41	13	20	25	1.88
169879--170333	143	3.2	142	78	8	346	41	14	18	25	1.89
171152--171244	22	4.2	22	95	0	159	29	13	22	34	1.93
171733--171761	11	2.5	12	88	11	51	6	17	20	55	1.65
171894--171979	17	5.1	16	71	15	50	0	13	8	77	0.97
171882--171974	25	3.7	25	74	14	75	1	12	8	77	1.04
171900--171973	8	9.1	8	73	8	69	0	13	6	79	0.91
176201--176242	14	2.9	14	85	3	57	76	0	2	21	0.90
176285--176360	36	2.1	36	87	4	109	46	3	2	47	1.35
177835--177868	6	5.7	6	92	0	50	38	47	0	14	1.45
180043--180172	55	2.4	55	84	1	154	29	23	25	22	1.99
182023--182063	20	2.0	20	85	0	55	0	53	34	12	1.38
182034--182072	20	2.0	20	89	0	60	2	51	30	15	1.57

Tables:   1

The End!