Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007846.1 Hibiscus syriacus cultivar Beakdansim tig00110202_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 846497
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
File 1 of 4
Found at i:3232 original size:16 final size:16
Alignment explanation
Indices: 3208--3241 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
3198 TATCGCCGAC
*
3208 CGAATTTCACTATTCA
1 CGAAATTCACTATTCA
3224 CGAAATTCACTATTCA
1 CGAAATTCACTATTCA
3240 CG
1 CG
3242 TGAATAGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.26, G:0.09, T:0.32
Consensus pattern (16 bp):
CGAAATTCACTATTCA
Found at i:20262 original size:10 final size:10
Alignment explanation
Indices: 20247--20271 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
20237 GCCATTGATC
20247 AACAACAAGA
1 AACAACAAGA
20257 AACAACAAGA
1 AACAACAAGA
20267 AACAA
1 AACAA
20272 GAATCAAGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.72, C:0.20, G:0.08, T:0.00
Consensus pattern (10 bp):
AACAACAAGA
Found at i:22448 original size:258 final size:258
Alignment explanation
Indices: 21991--22508 Score: 1000
Period size: 258 Copynumber: 2.0 Consensus size: 258
21981 TTATTATTCA
*
21991 TATTGAACCTGATATGTTGCTGCTTTGATTCTGTTATTCTGTAGTACTACTTTTAAGTCAAATTT
1 TATTGAACCTGATATGTTGCTGCTTTGATTCTGCTATTCTGTAGTACTACTTTTAAGTCAAATTT
*
22056 TGTAGGTATGCTACTGCGCTAGAGAGAAACCCAGAAGATTATGATTCTCTTTACAACTGGGCATT
66 TGTAGGTATGCTACTGCGCTAGAGAGAAACCCAGAAGATTATGATGCTCTTTACAACTGGGCATT
22121 GGTTCTTCAAGTTTGAGATGCTGGTTCATTATGATATTGTTATCTTAACATCATTCAAAATGATA
131 GGTTCTTCAAGTTTGAGATGCTGGTTCATTATGATATTGTTATCTTAACATCATTCAAAATGATA
*
22186 TATCATGTCCAATTCTTATTTTGCTAGAACTTCCTGCTTAAGTTTATGAATGTAAACATGATG
196 TATCATGTCCAATTCTTATTTTGCTAGAACTTCCTGCTTAAGTTTATGAAAGTAAACATGATG
22249 TATTGAACCTGATATGTTGCTGCTTTGATTCTGCTATTCTGTAGTACTACTTTTAAGTCAAATTT
1 TATTGAACCTGATATGTTGCTGCTTTGATTCTGCTATTCTGTAGTACTACTTTTAAGTCAAATTT
*
22314 TGTAGGTATGCTACTGCGCTAGAGAGAAACCCATAAGATTATGATGCTCTTTACAACTGGGCATT
66 TGTAGGTATGCTACTGCGCTAGAGAGAAACCCAGAAGATTATGATGCTCTTTACAACTGGGCATT
22379 GGTTCTTCAAGTTTGAGATGCTGGTTCATTATGATATTGTTATCTTAACATCATTCAAAATGATA
131 GGTTCTTCAAGTTTGAGATGCTGGTTCATTATGATATTGTTATCTTAACATCATTCAAAATGATA
22444 TATCATGTCCAATTCTTATTTTGCTAGAACTTCCTGCTTAAGTTTATGAAAGTAAACATGATG
196 TATCATGTCCAATTCTTATTTTGCTAGAACTTCCTGCTTAAGTTTATGAAAGTAAACATGATG
22507 TA
1 TA
22509 ATCTTTGCAA
Statistics
Matches: 256, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
258 256 1.00
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (258 bp):
TATTGAACCTGATATGTTGCTGCTTTGATTCTGCTATTCTGTAGTACTACTTTTAAGTCAAATTT
TGTAGGTATGCTACTGCGCTAGAGAGAAACCCAGAAGATTATGATGCTCTTTACAACTGGGCATT
GGTTCTTCAAGTTTGAGATGCTGGTTCATTATGATATTGTTATCTTAACATCATTCAAAATGATA
TATCATGTCCAATTCTTATTTTGCTAGAACTTCCTGCTTAAGTTTATGAAAGTAAACATGATG
Found at i:22845 original size:57 final size:57
Alignment explanation
Indices: 22757--22881 Score: 214
Period size: 57 Copynumber: 2.2 Consensus size: 57
22747 GATGACTTCT
* *
22757 CAGAATGCATAAGCCATATAAGAAGCTGGATAGACAAGAAAAATAAGTGTGGAGATG
1 CAGAATGCATAAGCCATATAAAAAGCTGGATAGACAAGAAAAATAAGTGTAGAGATG
*
22814 CAGAATGCATAAGCTATATAAAAAGCTGGATAGACAAGAAAAATAAGTGTAGAGATG
1 CAGAATGCATAAGCCATATAAAAAGCTGGATAGACAAGAAAAATAAGTGTAGAGATG
*
22871 CATAATGCATA
1 CAGAATGCATA
22882 GATGTTCCCA
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
57 64 1.00
ACGTcount: A:0.47, C:0.10, G:0.23, T:0.19
Consensus pattern (57 bp):
CAGAATGCATAAGCCATATAAAAAGCTGGATAGACAAGAAAAATAAGTGTAGAGATG
Found at i:24469 original size:15 final size:15
Alignment explanation
Indices: 24449--24479 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
24439 CAACAAATAG
24449 AATTTTTATATAAAT
1 AATTTTTATATAAAT
*
24464 AATTTTTATTTAAAT
1 AATTTTTATATAAAT
24479 A
1 A
24480 TTTAGAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
AATTTTTATATAAAT
Found at i:31258 original size:30 final size:30
Alignment explanation
Indices: 31220--31359 Score: 163
Period size: 30 Copynumber: 4.6 Consensus size: 30
31210 GTCTGCATAT
*
31220 TAATAATTCTGCTCATATTAATTTTGCTTG
1 TAATAATTCTGCTCATATTAATTCTGCTTG
* *
31250 TGATAATTCTGCTCGTATTAATTCTGCTTG
1 TAATAATTCTGCTCATATTAATTCTGCTTG
**
31280 TAATAATTCTGCTCATATTAATTCTGCTCA
1 TAATAATTCTGCTCATATTAATTCTGCTTG
* ** *
31310 TATTAATTCTGCTTGTAATAATTCTGCTTG
1 TAATAATTCTGCTCATATTAATTCTGCTTG
*
31340 TATTGATAATGCTGCTCATA
1 TA---ATAATTCTGCTCATA
31360 ATTTTTTGCC
Statistics
Matches: 90, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
30 79 0.88
33 11 0.12
ACGTcount: A:0.26, C:0.16, G:0.12, T:0.46
Consensus pattern (30 bp):
TAATAATTCTGCTCATATTAATTCTGCTTG
Found at i:31276 original size:45 final size:45
Alignment explanation
Indices: 31223--31343 Score: 163
Period size: 45 Copynumber: 2.7 Consensus size: 45
31213 TGCATATTAA
** * * *
31223 TAATTCTGCTCATATTAATTTTGCTTGTGA-TAATTCTGCTCGTAT
1 TAATTCTGCTTGTAATAATTCTGCTTGT-ATTAATTCTGCTCATAT
**
31268 TAATTCTGCTTGTAATAATTCTGCTCATATTAATTCTGCTCATAT
1 TAATTCTGCTTGTAATAATTCTGCTTGTATTAATTCTGCTCATAT
31313 TAATTCTGCTTGTAATAATTCTGCTTGTATT
1 TAATTCTGCTTGTAATAATTCTGCTTGTATT
31344 GATAATGCTG
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
44 1 0.02
45 65 0.98
ACGTcount: A:0.24, C:0.16, G:0.12, T:0.49
Consensus pattern (45 bp):
TAATTCTGCTTGTAATAATTCTGCTTGTATTAATTCTGCTCATAT
Found at i:31341 original size:15 final size:15
Alignment explanation
Indices: 31220--31337 Score: 128
Period size: 15 Copynumber: 7.9 Consensus size: 15
31210 GTCTGCATAT
*
31220 TAATAATTCTGCTCA
1 TAATAATTCTGCTCG
* * *
31235 TATTAATTTTGCTTG
1 TAATAATTCTGCTCG
*
31250 TGATAATTCTGCTCG
1 TAATAATTCTGCTCG
* *
31265 TATTAATTCTGCTTG
1 TAATAATTCTGCTCG
*
31280 TAATAATTCTGCTCA
1 TAATAATTCTGCTCG
* *
31295 TATTAATTCTGCTCA
1 TAATAATTCTGCTCG
* *
31310 TATTAATTCTGCTTG
1 TAATAATTCTGCTCG
31325 TAATAATTCTGCT
1 TAATAATTCTGCT
31338 TGTATTGATA
Statistics
Matches: 85, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 85 1.00
ACGTcount: A:0.25, C:0.16, G:0.11, T:0.47
Consensus pattern (15 bp):
TAATAATTCTGCTCG
Found at i:32645 original size:33 final size:33
Alignment explanation
Indices: 32608--32671 Score: 110
Period size: 33 Copynumber: 1.9 Consensus size: 33
32598 TTCACAACTA
32608 CTACATCACTACAACCATCTTCATCTCCATCAT
1 CTACATCACTACAACCATCTTCATCTCCATCAT
* *
32641 CTACATCACTACCATCATCTTCATCTCCATC
1 CTACATCACTACAACCATCTTCATCTCCATC
32672 TCCATCTCCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.28, C:0.41, G:0.00, T:0.31
Consensus pattern (33 bp):
CTACATCACTACAACCATCTTCATCTCCATCAT
Found at i:32664 original size:6 final size:6
Alignment explanation
Indices: 32656--32767 Score: 75
Period size: 6 Copynumber: 17.7 Consensus size: 6
32646 TCACTACCAT
* * * *
32656 CATCTT CATCTC CATCTC CATCTC CATCATC TA-CGTC ACTACCAC CATCTC
1 CATCTC CATCTC CATCTC CATCTC CATC-TC CATC-TC -C-ATCTC CATCTC
* * *
32707 CATCTC CATCTC CATCATC TACATCAC TA-CTAC TATCTC CATCTC CATCTC
1 CATCTC CATCTC CATC-TC --CATCTC CATCT-C CATCTC CATCTC CATCTC
32758 CATCTC CATC
1 CATCTC CATC
32768 ACCACCACCA
Statistics
Matches: 86, Mismatches: 11, Indels: 18
0.75 0.10 0.16
Matches are distributed among these distances:
5 1 0.01
6 69 0.80
7 8 0.09
8 3 0.03
9 5 0.06
ACGTcount: A:0.22, C:0.45, G:0.01, T:0.32
Consensus pattern (6 bp):
CATCTC
Found at i:32675 original size:39 final size:38
Alignment explanation
Indices: 32622--32761 Score: 172
Period size: 39 Copynumber: 3.4 Consensus size: 38
32612 ATCACTACAA
*
32622 CCATCTTCATCTCCATCATCTACATCACTACCATCATCTTCATCT
1 CCATCTCCATCTCCATCATCTACATCACTA-C--CA----CATCT
*
32667 CCATCTCCATCTCCATCATCTACGTCACTACCACCATCT
1 CCATCTCCATCTCCATCATCTACATCACTACCA-CATCT
*
32706 CCATCTCCATCTCCATCATCTACATCACTACTACTATCT
1 CCATCTCCATCTCCATCATCTACATCACTACCAC-ATCT
32745 CCATCTCCATCTCCATC
1 CCATCTCCATCTCCATC
32762 TCCATCACCA
Statistics
Matches: 89, Mismatches: 5, Indels: 8
0.87 0.05 0.08
Matches are distributed among these distances:
38 1 0.01
39 57 0.64
42 2 0.02
44 1 0.01
45 28 0.31
ACGTcount: A:0.24, C:0.44, G:0.01, T:0.32
Consensus pattern (38 bp):
CCATCTCCATCTCCATCATCTACATCACTACCACATCT
Found at i:32678 original size:45 final size:43
Alignment explanation
Indices: 32622--32768 Score: 203
Period size: 45 Copynumber: 3.4 Consensus size: 43
32612 ATCACTACAA
*
32622 CCATCTTCATCTCCATCATCTACATCACTACCATCATCTTCATCT
1 CCATCTCCATCTCCATCATCTACATCACTACCA-CATC-TCATCT
*
32667 CCATCTCCATCTCCATCATCTACGTCACTA-C-CA-C-CATCT
1 CCATCTCCATCTCCATCATCTACATCACTACCACATCTCATCT
*
32706 CCATCTCCATCTCCATCATCTACATCACTACTACTATCTCCATCT
1 CCATCTCCATCTCCATCATCTACATCACTACCAC-ATCT-CATCT
32751 CCATCTCCATCTCCATCA
1 CCATCTCCATCTCCATCA
32769 CCACCACCAC
Statistics
Matches: 92, Mismatches: 4, Indels: 12
0.85 0.04 0.11
Matches are distributed among these distances:
39 34 0.37
41 2 0.02
42 3 0.03
43 1 0.01
44 1 0.01
45 51 0.55
ACGTcount: A:0.24, C:0.44, G:0.01, T:0.32
Consensus pattern (43 bp):
CCATCTCCATCTCCATCATCTACATCACTACCACATCTCATCT
Found at i:34595 original size:13 final size:13
Alignment explanation
Indices: 34577--34602 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
34567 AAGCTTGAGC
34577 AGTTGGGCTAGTT
1 AGTTGGGCTAGTT
34590 AGTTGGGCTAGTT
1 AGTTGGGCTAGTT
34603 GTTATATATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.08, G:0.38, T:0.38
Consensus pattern (13 bp):
AGTTGGGCTAGTT
Found at i:35041 original size:33 final size:32
Alignment explanation
Indices: 35004--35069 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 32
34994 CATTAATAAC
* *
35004 TTAAAATTTATATAAATAATCATAAATAAA-ATT
1 TTAAAATTGATACAAATAAT-A-AAATAAATATT
*
35037 TTAAAATTGATACAATTAATAAAATAAATATT
1 TTAAAATTGATACAAATAATAAAATAAATATT
35069 T
1 T
35070 AACATAAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
31 7 0.24
32 5 0.17
33 17 0.59
ACGTcount: A:0.56, C:0.03, G:0.02, T:0.39
Consensus pattern (32 bp):
TTAAAATTGATACAAATAATAAAATAAATATT
Found at i:38523 original size:18 final size:18
Alignment explanation
Indices: 38497--38531 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
38487 TTTTCTTTCT
* *
38497 TTTTCTTTTTTATATTTA
1 TTTTATTTTTAATATTTA
38515 TTTTATTTTTAATATTT
1 TTTTATTTTTAATATTT
38532 GAAGTTATAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTTATTTTTAATATTTA
Found at i:43102 original size:18 final size:17
Alignment explanation
Indices: 43048--43096 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 17
43038 TTAGACCCTT
* *
43048 AGTGCATCGGTGCACTAA
1 AGTGCATCGATGCA-TCA
43066 GAGTGCATCGATGCATCA
1 -AGTGCATCGATGCATCA
43084 AGTGCATTCGATG
1 AGTGCA-TCGATG
43097 TTTCAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 6 0.22
18 8 0.30
19 13 0.48
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (17 bp):
AGTGCATCGATGCATCA
Found at i:43201 original size:65 final size:65
Alignment explanation
Indices: 43068--43227 Score: 209
Period size: 65 Copynumber: 2.5 Consensus size: 65
43058 TGCACTAAGA
* * *
43068 GTGCATCGATGCATCAAGTGCATTCGATG-TTTCAAAATAGCCAGAGTGCATCGATGCATGACTG
1 GTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAACAGCCACAGTGCATCGATGCATGACTG
* * * *
43132 GTGCATCGATGCATCAAATGCATTCGATGTTTTCATAACATCCTCAGTGCATCGGTGCATGGTA-
1 GTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAACAGCCACAGTGCATCGATGCAT-G-AC
43196 T-
64 TG
*
43197 GTGCATCGATGCATGAAATGCATTCGATGTT
1 GTGCATCGATGCATCAAATGCATTCGATGTT
43228 CAATTTAAGT
Statistics
Matches: 85, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
64 28 0.33
65 54 0.64
66 2 0.02
67 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (65 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAACAGCCACAGTGCATCGATGCATGACTG
Found at i:43266 original size:65 final size:65
Alignment explanation
Indices: 43068--43268 Score: 193
Period size: 65 Copynumber: 3.1 Consensus size: 65
43058 TGCACTAAGA
* ** * *
43068 GTGCATCGATGCATCAAGTGCATTCGATGTTTCAAAAT-AGCCA-GAGTGCATCGATGCAT-GAC
1 GTGCATCGATGCATCAAATGCATTCGATG-TTCAATTTAAGTCATG-GTGCATCGATGCATGGAT
43130 TG
64 TG
* * * *
43132 GTGCATCGATGCATCAAATGCATTCGATGTT---TTCATAACATCCTCAGTGCATCGGTGCATGG
1 GTGCATCGATGCATCAAATGCATTCGATGTTCAATT--TAA-GTCAT-GGTGCATCGATGCATGG
43194 -TAT-
62 AT-TG
*
43197 GTGCATCGATGCATGAAATGCATTCGATGTTCAATTTAAGTCATGGTGCATCGATGCATGGATTG
1 GTGCATCGATGCATCAAATGCATTCGATGTTCAATTTAAGTCATGGTGCATCGATGCATGGATTG
43262 GTGCATC
1 GTGCATC
43269 AGTGCTTCAC
Statistics
Matches: 110, Mismatches: 14, Indels: 25
0.74 0.09 0.17
Matches are distributed among these distances:
62 1 0.01
63 3 0.03
64 45 0.41
65 54 0.49
66 5 0.05
68 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.30
Consensus pattern (65 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTCAATTTAAGTCATGGTGCATCGATGCATGGATTG
Found at i:51737 original size:18 final size:17
Alignment explanation
Indices: 51683--51731 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 17
51673 TTGGACCCTT
* *
51683 AGTGCATCGGTGCACTAA
1 AGTGCATCGATGCA-TCA
51701 GAGTGCATCGATGCATCA
1 -AGTGCATCGATGCATCA
51719 AGTGCATTCGATG
1 AGTGCA-TCGATG
51732 TTTCAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 6 0.22
18 8 0.30
19 13 0.48
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (17 bp):
AGTGCATCGATGCATCA
Found at i:51836 original size:65 final size:65
Alignment explanation
Indices: 51703--51862 Score: 209
Period size: 65 Copynumber: 2.5 Consensus size: 65
51693 TGCACTAAGA
* * *
51703 GTGCATCGATGCATCAAGTGCATTCGATG-TTTCAAAATAGCCAGAGTGCATCGATGCATGACTG
1 GTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAACAGCCACAGTGCATCGATGCATGACTG
* * * *
51767 GTGCATCGATGCATCAAATGCATTCGATGTTTTCATAACATCCTCAGTGCATCGGTGCATGGTA-
1 GTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAACAGCCACAGTGCATCGATGCAT-G-AC
51831 T-
64 TG
*
51832 GTGCATCGATGCATGAAATGCATTCGATGTT
1 GTGCATCGATGCATCAAATGCATTCGATGTT
51863 CAATTTAATT
Statistics
Matches: 85, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
64 28 0.33
65 54 0.64
66 2 0.02
67 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (65 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAACAGCCACAGTGCATCGATGCATGACTG
Found at i:51901 original size:65 final size:64
Alignment explanation
Indices: 51703--51912 Score: 202
Period size: 65 Copynumber: 3.2 Consensus size: 64
51693 TGCACTAAGA
* * *
51703 GTGCATCGATGCATCAAGTGCATTCGATGTTTCAA--AATAGCCAGAGTGCATCGATGCAT-GAC
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCAATTAAT--TCAG-GTGCATCGATGCATGGAT
51765 TG
63 TG
* *
51767 GTGCATCGATGCATCAAATGCATTCGATGTTTTC-ATAACATCCTCA-GTGCATCGGTGCATGG-
1 GTGCATCGATGCATCAAATGCATTCGATG-TTTCAATTA-AT--TCAGGTGCATCGATGCATGGA
51829 TAT-
62 T-TG
* *
51832 GTGCATCGATGCATGAAATGCATTCGATG-TTCAATTTAATTCATGGTGCATTGATGCATGGATT
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCAA-TTAATTCA-GGTGCATCGATGCATGGATT
51896 G
64 G
*
51897 GTGCATCGGTGCATCA
1 GTGCATCGATGCATCA
51913 CTCTGAAAAA
Statistics
Matches: 122, Mismatches: 12, Indels: 23
0.78 0.08 0.15
Matches are distributed among these distances:
62 3 0.02
63 3 0.02
64 47 0.39
65 62 0.51
66 3 0.02
67 4 0.03
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (64 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTCAATTAATTCAGGTGCATCGATGCATGGATTG
Found at i:53482 original size:6 final size:6
Alignment explanation
Indices: 53472--53506 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
53462 AAACAGCTAC
*
53472 CCCACC CCCACT CCCACT CCCACT CCCACT CCCAC
1 CCCACT CCCACT CCCACT CCCACT CCCACT CCCAC
53507 ACATAACCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.17, C:0.71, G:0.00, T:0.11
Consensus pattern (6 bp):
CCCACT
Found at i:61217 original size:18 final size:18
Alignment explanation
Indices: 61182--61222 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
61172 CATTCTGTAC
*
61182 CTTCTTATTCTCCCTCTT
1 CTTCTTATTCTCACTCTT
* *
61200 CTTCTTATTCTTATTCTT
1 CTTCTTATTCTCACTCTT
61218 CTTCT
1 CTTCT
61223 GCATCACCTC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.07, C:0.32, G:0.00, T:0.61
Consensus pattern (18 bp):
CTTCTTATTCTCACTCTT
Found at i:69540 original size:19 final size:18
Alignment explanation
Indices: 69484--69541 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 18
69474 TTTCATTCAC
*
69484 AGAATGTAAGATTATCTTTG
1 AGAATGTAACATTA--TTTG
69504 AGAA--TAACATTA-TT-
1 AGAATGTAACATTATTTG
69518 AGAATGTAACATTATTATG
1 AGAATGTAACATTATT-TG
69537 AGAAT
1 AGAAT
69542 ATTATATTAC
Statistics
Matches: 32, Mismatches: 1, Indels: 11
0.73 0.02 0.25
Matches are distributed among these distances:
14 4 0.12
15 2 0.06
16 8 0.25
17 1 0.03
18 8 0.25
19 5 0.16
20 4 0.12
ACGTcount: A:0.43, C:0.05, G:0.16, T:0.36
Consensus pattern (18 bp):
AGAATGTAACATTATTTG
Found at i:75872 original size:60 final size:60
Alignment explanation
Indices: 75760--75937 Score: 148
Period size: 60 Copynumber: 3.0 Consensus size: 60
75750 TCATATGTCT
* * * * *
75760 TCAAACTATGACA-TCAATCTAAATTAGTCCTC-AAATTTGT-ATTAC-TCTAATTTCATCC
1 TCAAACTATGACACTCATTCTAAATTAATCCCCAAAATTT-TAAAT-CTTCCAATTTCATCC
* * * * ** * * *
75818 TCATACTATGATACTCATTTTAAATTATTCCTTAAAATTTTGAATGTTCCAATTTTATCC
1 TCAAACTATGACACTCATTCTAAATTAATCCCCAAAATTTTAAATCTTCCAATTTCATCC
* * * *
75878 TTAAACTATGACCCTCATTCTAAATTAATCCCCAAACTTTTAAATCTTTCAATTTCATCC
1 TCAAACTATGACACTCATTCTAAATTAATCCCCAAAATTTTAAATCTTCCAATTTCATCC
75938 CTAAATTCAT
Statistics
Matches: 93, Mismatches: 23, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
58 11 0.12
59 16 0.17
60 66 0.71
ACGTcount: A:0.33, C:0.22, G:0.04, T:0.41
Consensus pattern (60 bp):
TCAAACTATGACACTCATTCTAAATTAATCCCCAAAATTTTAAATCTTCCAATTTCATCC
Found at i:76158 original size:60 final size:60
Alignment explanation
Indices: 76065--76180 Score: 146
Period size: 60 Copynumber: 1.9 Consensus size: 60
76055 TAGTATATAC
* * * *
76065 ATATAATTTGGGATGAAATTGAAATGTTGAAAAAGTTTG-GGAACTAATTTAGAATGAAGG
1 ATATAATTTGGGATGAAACTAAAATGTTGAAAAACTTTGAGG-ACAAATTTAGAATGAAGG
* *
76125 ATATAGTTTGGGGATGAAACTAAAATGTT-AAAAACTTTGAGGACAAATTTGGAATG
1 ATATAATTT-GGGATGAAACTAAAATGTTGAAAAACTTTGAGGACAAATTTAGAATG
76181 GTAGTCATAA
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
60 29 0.60
61 19 0.40
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (60 bp):
ATATAATTTGGGATGAAACTAAAATGTTGAAAAACTTTGAGGACAAATTTAGAATGAAGG
Found at i:78029 original size:25 final size:25
Alignment explanation
Indices: 77997--78082 Score: 140
Period size: 25 Copynumber: 3.5 Consensus size: 25
77987 TGATTGGAAG
77997 GGAATACTAAGTTTTTTAAAAAAAA
1 GGAATACTAAGTTTTTTAAAAAAAA
78022 GGAATACTAAGTTTTTTAAAAAAAA
1 GGAATACTAAGTTTTTTAAAAAAAA
**
78047 GGAATACTAAG--TTAAAAAAAAAA
1 GGAATACTAAGTTTTTTAAAAAAAA
78070 GGAATACTAAGTT
1 GGAATACTAAGTT
78083 AAAAAAAAAA
Statistics
Matches: 57, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
23 21 0.37
25 36 0.63
ACGTcount: A:0.53, C:0.05, G:0.14, T:0.28
Consensus pattern (25 bp):
GGAATACTAAGTTTTTTAAAAAAAA
Found at i:78093 original size:25 final size:23
Alignment explanation
Indices: 78014--78092 Score: 122
Period size: 23 Copynumber: 3.3 Consensus size: 23
78004 TAAGTTTTTT
**
78014 AAAAAAAAGGAATACTAAGTTTTTT
1 AAAAAAAAGGAATACTAAG--TTAA
78039 AAAAAAAAGGAATACTAAGTTAA
1 AAAAAAAAGGAATACTAAGTTAA
78062 AAAAAAAAGGAATACTAAGTTAA
1 AAAAAAAAGGAATACTAAGTTAA
78085 AAAAAAAA
1 AAAAAAAA
78093 AGATGCATCA
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
23 33 0.63
25 19 0.37
ACGTcount: A:0.65, C:0.04, G:0.11, T:0.20
Consensus pattern (23 bp):
AAAAAAAAGGAATACTAAGTTAA
Found at i:78293 original size:40 final size:40
Alignment explanation
Indices: 78185--78367 Score: 165
Period size: 40 Copynumber: 4.5 Consensus size: 40
78175 GTAAATATTA
* *
78185 TTAAATATTGTATTTTAGTGGTGTTTTTATACAAAC-ACTG
1 TTAAATATTATATTTTAGTGGTGTTTTTATACAAACGTC-G
* * *
78225 CTAAAAATTCATATTTTAGTGGTGTTTTTATATAAACGTCG
1 TTAAATATT-ATATTTTAGTGGTGTTTTTATACAAACGTCG
* * * * *
78266 TTAAATATTATATTTTAATGATTTTTTTA-ACAAATG-AG
1 TTAAATATTATATTTTAGTGGTGTTTTTATACAAACGTCG
* ** * * *
78304 AGTAAATACTCGTACTTTAGTGGTGTTTTTATATAAATGTCG
1 -TTAAATA-TTATATTTTAGTGGTGTTTTTATACAAACGTCG
78346 TTAAATATTATATTTTAGTGGT
1 TTAAATATTATATTTTAGTGGT
78368 TCGTACAAAC
Statistics
Matches: 111, Mismatches: 26, Indels: 12
0.74 0.17 0.08
Matches are distributed among these distances:
38 1 0.01
39 11 0.10
40 52 0.47
41 45 0.41
42 2 0.02
ACGTcount: A:0.32, C:0.07, G:0.14, T:0.47
Consensus pattern (40 bp):
TTAAATATTATATTTTAGTGGTGTTTTTATACAAACGTCG
Found at i:78481 original size:41 final size:41
Alignment explanation
Indices: 78371--78481 Score: 102
Period size: 40 Copynumber: 2.7 Consensus size: 41
78361 TAGTGGTTCG
* * * **
78371 TACAAACGCCGCTAAAGACTCTTATTTTAGTGCTTTTTTTGA
1 TACAAACACTGCTAAAGACTCGTA-TTTAGTAATTTTTTTGA
* * *
78413 -ATAAACA-TCGGTAAATACTCGTATTTAGTAATTTTTTT-A
1 TACAAACACT-GCTAAAGACTCGTATTTAGTAATTTTTTTGA
78452 TACAAACACTGCTAAAGACTCGTACTTTAG
1 TACAAACACTGCTAAAGACTCGTA-TTTAG
78482 CAAACTCTCA
Statistics
Matches: 54, Mismatches: 11, Indels: 9
0.73 0.15 0.12
Matches are distributed among these distances:
39 1 0.02
40 31 0.57
41 22 0.41
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.38
Consensus pattern (41 bp):
TACAAACACTGCTAAAGACTCGTATTTAGTAATTTTTTTGA
Found at i:92007 original size:23 final size:24
Alignment explanation
Indices: 91980--92028 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 24
91970 GAGTCTAAAA
91980 TATTTGAATCAAA-TTAAATATTT
1 TATTTGAATCAAATTTAAATATTT
* *
92003 TATTTGAATTAAATTTTAATATTT
1 TATTTGAATCAAATTTAAATATTT
92027 TA
1 TA
92029 CTCGCAAACG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 12 0.52
24 11 0.48
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.53
Consensus pattern (24 bp):
TATTTGAATCAAATTTAAATATTT
Found at i:95620 original size:35 final size:35
Alignment explanation
Indices: 95581--95729 Score: 210
Period size: 35 Copynumber: 4.2 Consensus size: 35
95571 CAACTTTAAA
*
95581 AAAATGATTTTCAAAGTTTGATAAATGTTTCTTTG
1 AAAATGATTTTCAAAGTTTGGTAAATGTTTCTTTG
*
95616 AAAATGGTTTTCAAAGTTTGGTAAATGTTTCTTTG
1 AAAATGATTTTCAAAGTTTGGTAAATGTTTCTTTG
* *
95651 AAAATGGTCTTCAAAGTTTGGTAAATGTTTCTTTG
1 AAAATGATTTTCAAAGTTTGGTAAATGTTTCTTTG
* * *
95686 AAAAATAGTTTTTCAAAGTTTGGTAGATGTTT-GTTG
1 -AAAAT-GATTTTCAAAGTTTGGTAAATGTTTCTTTG
95722 AAAATGAT
1 AAAATGAT
95730 AATGGGATAA
Statistics
Matches: 104, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
34 2 0.02
35 72 0.69
36 8 0.08
37 22 0.21
ACGTcount: A:0.32, C:0.05, G:0.19, T:0.44
Consensus pattern (35 bp):
AAAATGATTTTCAAAGTTTGGTAAATGTTTCTTTG
Found at i:95641 original size:21 final size:21
Alignment explanation
Indices: 95617--95677 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
95607 GTTTCTTTGA
95617 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
*
95638 AAAT-G-TTTC----TTT-GA
1 AAATGGTTTTCAAAGTTTGGT
*
95652 AAATGGTCTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
95673 AAATG
1 AAATG
95678 TTTCTTTGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 14
0.64 0.06 0.30
Matches are distributed among these distances:
14 5 0.17
15 4 0.13
16 3 0.10
19 4 0.13
20 4 0.13
21 10 0.33
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.41
Consensus pattern (21 bp):
AAATGGTTTTCAAAGTTTGGT
Found at i:96154 original size:16 final size:16
Alignment explanation
Indices: 96133--96165 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
96123 TACTATTCAT
*
96133 GTGAATAGTGAATTTC
1 GTGAATAGTGAAATTC
96149 GTGAATAGTGAAATTC
1 GTGAATAGTGAAATTC
96165 G
1 G
96166 ATCGGCGATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.06, G:0.27, T:0.33
Consensus pattern (16 bp):
GTGAATAGTGAAATTC
Found at i:96933 original size:15 final size:16
Alignment explanation
Indices: 96915--96947 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
96905 GTGGCAGATC
96915 AAAATCCAG-ACGGGA
1 AAAATCCAGAACGGGA
96930 AAAATCCAGAACGGGA
1 AAAATCCAGAACGGGA
96946 AA
1 AA
96948 TAAAGATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.52, C:0.18, G:0.24, T:0.06
Consensus pattern (16 bp):
AAAATCCAGAACGGGA
Found at i:100266 original size:35 final size:35
Alignment explanation
Indices: 100227--100373 Score: 224
Period size: 35 Copynumber: 4.2 Consensus size: 35
100217 CAACTTTGAA
*
100227 AAAATGGTTTTCAAAATTTGGTAAATGTTTCTTTG
1 AAAATGGTTTTCAAAGTTTGGTAAATGTTTCTTTG
*
100262 AAAATGGTTTTCAAAGTTTGGTAAATGTTTCTTTA
1 AAAATGGTTTTCAAAGTTTGGTAAATGTTTCTTTG
100297 AAAATGGTTTTCAAAGTTTGGTAAATGTTTCTTTG
1 AAAATGGTTTTCAAAGTTTGGTAAATGTTTCTTTG
* * *
100332 AAAAATAGTTTTTCAAAGTTTGGTAGATGTTT-GTTG
1 -AAAAT-GGTTTTCAAAGTTTGGTAAATGTTTCTTTG
100368 AAAATG
1 AAAATG
100374 ATAATGGGAT
Statistics
Matches: 104, Mismatches: 6, Indels: 5
0.90 0.05 0.04
Matches are distributed among these distances:
34 1 0.01
35 72 0.69
36 8 0.08
37 23 0.22
ACGTcount: A:0.32, C:0.05, G:0.19, T:0.44
Consensus pattern (35 bp):
AAAATGGTTTTCAAAGTTTGGTAAATGTTTCTTTG
Found at i:100283 original size:70 final size:71
Alignment explanation
Indices: 100193--100356 Score: 219
Period size: 70 Copynumber: 2.3 Consensus size: 71
100183 TGAAATTATT
100193 AAAATGGTTTTC-AAGTTTGGTAACCA-ACTT-TGAAAAAATGGTTTTCAAAATTTGGTAAATGT
1 AAAATGGTTTTCAAAGTTTGGTAA--ATACTTCTGAAAAAATGGTTTTCAAAATTTGGTAAATGT
100255 TTCTTTG-
64 TTCTTTGA
** ** *
100262 AAAATGGTTTTCAAAGTTTGGTAAATGTTTCTTTAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
1 AAAATGGTTTTCAAAGTTTGGTAAATACTTCTGAAAAAATGGTTTTCAAAATTTGGTAAATGTTT
100327 CTTTGA
66 CTTTGA
*
100333 AAAATAGTTTTTCAAAGTTTGGTA
1 AAAAT-GGTTTTCAAAGTTTGGTA
100357 GATGTTTGTT
Statistics
Matches: 84, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
68 1 0.01
69 14 0.17
70 47 0.56
71 5 0.06
72 17 0.20
ACGTcount: A:0.33, C:0.07, G:0.18, T:0.43
Consensus pattern (71 bp):
AAAATGGTTTTCAAAGTTTGGTAAATACTTCTGAAAAAATGGTTTTCAAAATTTGGTAAATGTTT
CTTTGA
Found at i:100287 original size:21 final size:21
Alignment explanation
Indices: 100263--100323 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
100253 GTTTCTTTGA
100263 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
**
100284 AAAT-G-TTTC----TTT-AA
1 AAATGGTTTTCAAAGTTTGGT
100298 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
100319 AAATG
1 AAATG
100324 TTTCTTTGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 14
0.62 0.09 0.30
Matches are distributed among these distances:
14 4 0.14
15 4 0.14
16 4 0.14
19 4 0.14
20 4 0.14
21 9 0.31
ACGTcount: A:0.33, C:0.05, G:0.20, T:0.43
Consensus pattern (21 bp):
AAATGGTTTTCAAAGTTTGGT
Found at i:107394 original size:14 final size:14
Alignment explanation
Indices: 107377--107417 Score: 73
Period size: 14 Copynumber: 2.9 Consensus size: 14
107367 GCTCGAATGG
107377 CCTCGGTCGGATGC
1 CCTCGGTCGGATGC
107391 CCTCGGTCGGATGC
1 CCTCGGTCGGATGC
*
107405 CCTCTGTCGGATG
1 CCTCGGTCGGATG
107418 GCTTCGGATG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.07, C:0.34, G:0.34, T:0.24
Consensus pattern (14 bp):
CCTCGGTCGGATGC
Found at i:109156 original size:6 final size:6
Alignment explanation
Indices: 109145--109176 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
109135 GTGCCAAGTC
109145 CCAACT CCAACT CCAACT CCAACT CCAACT CC
1 CCAACT CCAACT CCAACT CCAACT CCAACT CC
109177 GACCTTCTCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.31, C:0.53, G:0.00, T:0.16
Consensus pattern (6 bp):
CCAACT
Found at i:110504 original size:16 final size:16
Alignment explanation
Indices: 110485--110526 Score: 52
Period size: 14 Copynumber: 2.8 Consensus size: 16
110475 CCCAAAAAGA
110485 TGTATATTCCCAGTG-
1 TGTATATTCCCAGTGC
* *
110500 T-TGTATTCTCAGTGC
1 TGTATATTCCCAGTGC
110515 TGTATATTCCCA
1 TGTATATTCCCA
110527 AAACGTTGAG
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
14 11 0.52
15 2 0.10
16 8 0.38
ACGTcount: A:0.19, C:0.21, G:0.17, T:0.43
Consensus pattern (16 bp):
TGTATATTCCCAGTGC
Found at i:116262 original size:18 final size:18
Alignment explanation
Indices: 116239--116273 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
116229 CGGTCATGCT
116239 ACCGGTTCAACCGGTCGA
1 ACCGGTTCAACCGGTCGA
*
116257 ACCGGTTCGACCGGTCG
1 ACCGGTTCAACCGGTCG
116274 GAAGAACCGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.34, G:0.31, T:0.17
Consensus pattern (18 bp):
ACCGGTTCAACCGGTCGA
Found at i:117145 original size:20 final size:20
Alignment explanation
Indices: 117120--117159 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
117110 TCCCACAATG
117120 TCATAATCATTCACAACCAC
1 TCATAATCATTCACAACCAC
117140 TCATAATCATTCACAACCAC
1 TCATAATCATTCACAACCAC
117160 CAACAGAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.35, G:0.00, T:0.25
Consensus pattern (20 bp):
TCATAATCATTCACAACCAC
Found at i:118441 original size:71 final size:69
Alignment explanation
Indices: 118316--118522 Score: 265
Period size: 69 Copynumber: 3.0 Consensus size: 69
118306 TATAAAGCTA
* * *
118316 ACGTAAATTTATATAGGGTAAAGTGTAC--ATGATCTCTTGATTATATGTTGTTGTTTTGTTAAA
1 ACGTAAATTTATATAGGGTAAAGTTTACAAATGGTCTCTTGATTATAAGTTGTTGTTTTGTTAAA
118379 TTTT
66 TTTT
* * * * *
118383 ACGTAAATTTATATATAGGGTAAAATTTACAAATGGTCTCCTGATTACAGGTTGTTGTTTTATTA
1 ACGTAAA-TT-TATATAGGGTAAAGTTTACAAATGGTCTCTTGATTATAAGTTGTTGTTTTGTTA
118448 AATTTT
64 AATTTT
* * * * *
118454 ACCTAAACTTATATAGGGTAAAGTTTACAAATGGTCTTTTGATTATAAGATGTTGTTTTGTTAAT
1 ACGTAAATTTATATAGGGTAAAGTTTACAAATGGTCTCTTGATTATAAGTTGTTGTTTTGTTAAA
118519 TTTT
66 TTTT
118523 TTTATTATTA
Statistics
Matches: 119, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
67 7 0.06
68 2 0.02
69 69 0.58
70 1 0.01
71 40 0.34
ACGTcount: A:0.30, C:0.07, G:0.16, T:0.46
Consensus pattern (69 bp):
ACGTAAATTTATATAGGGTAAAGTTTACAAATGGTCTCTTGATTATAAGTTGTTGTTTTGTTAAA
TTTT
Found at i:125159 original size:24 final size:24
Alignment explanation
Indices: 125127--125186 Score: 79
Period size: 22 Copynumber: 2.6 Consensus size: 24
125117 AAAATACGGT
*
125127 ATGAACAGTACCGTATGAGTAGTG
1 ATGAACAGTACCGTATGAATAGTG
*
125151 ATGAACAGTA-C-TGTGAATAGTG
1 ATGAACAGTACCGTATGAATAGTG
*
125173 ACGAACAGTACCGT
1 ATGAACAGTACCGT
125187 GAAAAGTACC
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
22 18 0.58
23 2 0.06
24 11 0.35
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.23
Consensus pattern (24 bp):
ATGAACAGTACCGTATGAATAGTG
Found at i:125934 original size:23 final size:26
Alignment explanation
Indices: 125904--125968 Score: 91
Period size: 23 Copynumber: 2.6 Consensus size: 26
125894 ACTGAATATT
* *
125904 TGTCCCGAAGGACCACGTA-GA-A-A
1 TGTCCCGAAGGACCACATATCACATA
125927 TGTCCCGAAGGACCACATATCACATA
1 TGTCCCGAAGGACCACATATCACATA
125953 TGTCCCGAAGGACCAC
1 TGTCCCGAAGGACCAC
125969 TCCTTAAGAA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
23 18 0.49
24 1 0.03
25 1 0.03
26 17 0.46
ACGTcount: A:0.32, C:0.31, G:0.22, T:0.15
Consensus pattern (26 bp):
TGTCCCGAAGGACCACATATCACATA
Found at i:135395 original size:29 final size:29
Alignment explanation
Indices: 135321--135396 Score: 100
Period size: 28 Copynumber: 2.7 Consensus size: 29
135311 CGATGATGAA
*
135321 TATATTTATAGATCTAACATCGGTCAGAT
1 TATATTTTTAGATCTAACATCGGTCAGAT
* * *
135350 TAT-TTTTTTGATTTAACATTGGTCAGAT
1 TATATTTTTAGATCTAACATCGGTCAGAT
*
135378 TATATTTTTCGATCTAACA
1 TATATTTTTAGATCTAACA
135397 CCTGTAGAAG
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
28 24 0.60
29 16 0.40
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.46
Consensus pattern (29 bp):
TATATTTTTAGATCTAACATCGGTCAGAT
Found at i:139295 original size:15 final size:15
Alignment explanation
Indices: 139267--139304 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
139257 TATAATGAAA
*
139267 TAAAG-TTTATATTT
1 TAAAGTTTTAAATTT
139281 TAAAGTTTTAAATTT
1 TAAAGTTTTAAATTT
*
139296 TAAAATTTT
1 TAAAGTTTT
139305 TGGGTAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 5 0.24
15 16 0.76
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.55
Consensus pattern (15 bp):
TAAAGTTTTAAATTT
Found at i:139745 original size:59 final size:60
Alignment explanation
Indices: 139662--139823 Score: 168
Period size: 59 Copynumber: 2.7 Consensus size: 60
139652 AGTCTGATGG
* * * *
139662 TCATTTTGTAACTCTTGATAGTCGAGGGAAT-AAAAAAAGCAACTTCATATAGTTA-GAGA
1 TCATTTTGTAACTTTTAATAGTCGAGGGAATCAAAAAAA-CAACTCCATATAGTCAGGAGA
* * * * *
139721 -CTATTTTGTAACTTTTAATTGTCGAGCGATTCAACAAAACAACTCCATATTGTCAGGAGA
1 TC-ATTTTGTAACTTTTAATAGTCGAGGGAATCAAAAAAACAACTCCATATAGTCAGGAGA
* * *
139781 TCATTTTGTAACTTTTTATAGTCGAGGTAATCCACAAAAACAA
1 TCATTTTGTAACTTTTAATAGTCGAGGGAAT-CAAAAAAACAA
139824 TATCATAGAG
Statistics
Matches: 82, Mismatches: 16, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
58 1 0.01
59 37 0.45
60 34 0.41
61 10 0.12
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.33
Consensus pattern (60 bp):
TCATTTTGTAACTTTTAATAGTCGAGGGAATCAAAAAAACAACTCCATATAGTCAGGAGA
Found at i:139818 original size:60 final size:59
Alignment explanation
Indices: 139662--139819 Score: 160
Period size: 60 Copynumber: 2.6 Consensus size: 59
139652 AGTCTGATGG
* * * * *
139662 TCATTTTGTAACTCTTGATAGTCGAGGGAAT-AAAAAAAGCAACTTCATATAGTTAGAGA
1 TCATTTTGTAACTTTTAATAGTCGA-GGAATCAACAAAAGCAACTCCATATAGTCAGAGA
* * *
139721 -CTATTTTGTAACTTTTAATTGTCGAGCGATTCAACAAAA-CAACTCCATATTGTCAGGAGA
1 TC-ATTTTGTAACTTTTAATAGTCGAG-GAATCAACAAAAGCAACTCCATATAGTCA-GAGA
* *
139781 TCATTTTGTAACTTTTTATAGTCGAGGTAATCCACAAAA
1 TCATTTTGTAACTTTTAATAGTCGAGG-AATCAACAAAA
139820 ACAATATCAT
Statistics
Matches: 81, Mismatches: 12, Indels: 11
0.78 0.12 0.11
Matches are distributed among these distances:
58 2 0.02
59 37 0.46
60 41 0.51
61 1 0.01
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (59 bp):
TCATTTTGTAACTTTTAATAGTCGAGGAATCAACAAAAGCAACTCCATATAGTCAGAGA
Found at i:144603 original size:15 final size:15
Alignment explanation
Indices: 144565--144604 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
144555 GGTTTAGTAA
144565 TAACCGGAGGAACTG
1 TAACCGGAGGAACTG
* *
144580 TTACTGGAGGAACTG
1 TAACCGGAGGAACTG
144595 TAACCGGAGG
1 TAACCGGAGG
144605 GAGGCCAATG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.30, C:0.17, G:0.35, T:0.17
Consensus pattern (15 bp):
TAACCGGAGGAACTG
Found at i:163854 original size:15 final size:16
Alignment explanation
Indices: 163834--163863 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
163824 GATAACTACT
163834 AAAAAATT-ATAAATA
1 AAAAAATTAATAAATA
163849 AAAAAATTAATAAAT
1 AAAAAATTAATAAAT
163864 TGTTCATGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (16 bp):
AAAAAATTAATAAATA
Found at i:164476 original size:18 final size:17
Alignment explanation
Indices: 164455--164488 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
164445 CTATGAGTTT
164455 AAATATAAATATTTTTTA
1 AAATAT-AATATTTTTTA
*
164473 AAATATATTATTTTTT
1 AAATATAATATTTTTT
164489 TATTAATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
AAATATAATATTTTTTA
Found at i:169095 original size:2 final size:2
Alignment explanation
Indices: 169088--169114 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
169078 AGTTTAGGTC
169088 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
169115 TTTAGATCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:184684 original size:23 final size:21
Alignment explanation
Indices: 184630--184711 Score: 78
Period size: 21 Copynumber: 3.9 Consensus size: 21
184620 TTTTGGTGCA
184630 GAGGGAATCGA-TCCCCCCAT
1 GAGGGAATCGATTCCCCCCAT
* **
184650 GAGGGAACCGATTCCCCCTTT
1 GAGGGAATCGATTCCCCCCAT
184671 GAAGAGGAATCGATTCCCCCCA-
1 G-AG-GGAATCGATTCCCCCCAT
* *
184693 CAGGGGAATCGATACCCCC
1 GA-GGGAATCGATTCCCCC
184712 TGGGGTTCTG
Statistics
Matches: 50, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
20 10 0.20
21 23 0.46
22 3 0.06
23 14 0.28
ACGTcount: A:0.26, C:0.34, G:0.24, T:0.16
Consensus pattern (21 bp):
GAGGGAATCGATTCCCCCCAT
Found at i:187010 original size:33 final size:33
Alignment explanation
Indices: 186968--187033 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
186958 TTACATGATA
186968 AATTGAAGAAGTGTTAAAGTAAGGGGGAGTAAT
1 AATTGAAGAAGTGTTAAAGTAAGGGGGAGTAAT
187001 AATTGAAGAAGTGTTAAAGTAAGGGGGAGTAAT
1 AATTGAAGAAGTGTTAAAGTAAGGGGGAGTAAT
187034 TTCAAAACTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.42, C:0.00, G:0.33, T:0.24
Consensus pattern (33 bp):
AATTGAAGAAGTGTTAAAGTAAGGGGGAGTAAT
Found at i:188209 original size:35 final size:32
Alignment explanation
Indices: 188174--188254 Score: 83
Period size: 35 Copynumber: 2.3 Consensus size: 32
188164 TTCAGTTAAT
188174 TTTGTT-TATTACCATTTAATATCAGTTATTGTAA
1 TTTGTTATATTACCATTTAATAT---TTATTGTAA
188208 TTTGATTATCATTTACCATTTAATATTTATTGTAA
1 TTTG-TTAT-A-TTACCATTTAATATTTATTGTAA
*
188243 GTTTGTTGTATT
1 -TTTGTTATATT
188255 TAAAATTATT
Statistics
Matches: 41, Mismatches: 1, Indels: 11
0.77 0.02 0.21
Matches are distributed among these distances:
33 2 0.05
34 5 0.12
35 14 0.34
36 5 0.12
37 1 0.02
38 14 0.34
ACGTcount: A:0.27, C:0.07, G:0.10, T:0.56
Consensus pattern (32 bp):
TTTGTTATATTACCATTTAATATTTATTGTAA
Found at i:192163 original size:18 final size:19
Alignment explanation
Indices: 192140--192176 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
192130 AAAAGATCGA
192140 AACATCA-CGGGCGTGGAT
1 AACATCACCGGGCGTGGAT
*
192158 AACATCACCGGGCTTGGAT
1 AACATCACCGGGCGTGGAT
192177 CTAATATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.27, C:0.24, G:0.30, T:0.19
Consensus pattern (19 bp):
AACATCACCGGGCGTGGAT
Found at i:202165 original size:91 final size:91
Alignment explanation
Indices: 202051--203220 Score: 1780
Period size: 91 Copynumber: 12.9 Consensus size: 91
202041 ATCGAACAAA
* ** *
202051 GTTGAACAAGTTCTTCTCATTATGAACTTATTCTCTTTCGTTGGATGGGTTCTTCTCATTATGAA
1 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTATGAA
* * *
202116 CTCTCCACTGGTATTGTTGAATCAAG
66 CTCTCCACTGGAAATGTTGAACCAAG
* *
202142 GTTGAACAAGTTATTCTCATTATGAACTTCTTCTCTCTCGTTGGATGAGTTCTTCTCATTATGAA
1 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTATGAA
* *
202207 CTCTCCACTAGAAATCTTGAACCAAG
66 CTCTCCACTGGAAATGTTGAACCAAG
* * *
202233 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCTTCGTTGGACGAGTTCTTCTTATTATGAA
1 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTATGAA
* *
202298 CTCTCCGCTGGAAATATTGATA-CAAG
66 CTCTCCACTGGAAATGTTGA-ACCAAG
202324 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTATGAA
1 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTATGAA
* * *
202389 CTCTCCACTGGAAATCTTAAACCGAG
66 CTCTCCACTGGAAATGTTGAACCAAG
*
202415 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGACGAGTTCTTCTCATTATGAA
1 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTATGAA
* ** **
202480 CTCTCCGCTATAAATGTTGATGCAAG
66 CTCTCCACTGGAAATGTTGAACCAAG
*
202506 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATGAGTTTTTCTCATTATGAA
1 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTATGAA
* * **
202571 CTCTCCACTGGAAATCTTAAACTGAG
66 CTCTCCACTGGAAATGTTGAACCAAG
*
202597 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGACGAGTTCTTCTCATTATGAA
1 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTATGAA
**
202662 CTCTCCACTGGAAATGTTGATGCAAG
66 CTCTCCACTGGAAATGTTGAACCAAG
202688 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTATGAA
1 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTATGAA
* *
202753 CTCTCCACTGGAAATGATGAACCAAT
66 CTCTCCACTGGAAATGTTGAACCAAG
* * * * * *
202779 GTTGAATAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTAGACGAATTCTTCACAATATGAA
1 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTATGAA
* * **
202844 CTCTCCACTGGAAATCTTAAACTGAG
66 CTCTCCACTGGAAATGTTGAACCAAG
202870 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTATGAA
1 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTATGAA
* * *
202935 CTCTCCACTGGAAATGATGAGCCAAA
66 CTCTCCACTGGAAATGTTGAACCAAG
*
202961 GTT-------TTCTTCTCATTATGAACTTTTTCTCCCTCGTTGGATGAGTTCTTCTCATTATGAA
1 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTATGAA
*
203019 CTCTCCACTGGAAATGTTGAGCCAAG
66 CTCTCCACTGGAAATGTTGAACCAAG
*
203045 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTAGATGAGTTCTTCTCATTATGAA
1 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTATGAA
* * *
203110 CTCTCCACTGGAAATGATAAATCAAG
66 CTCTCCACTGGAAATGTTGAACCAAG
*
203136 GTTGAACAAGTTCTTCTCATTATAAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTATGAA
1 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTATGAA
203201 CTCTCCACTGGAAATGTTGA
66 CTCTCCACTGGAAATGTTGA
203221 TCGATTATCT
Statistics
Matches: 975, Mismatches: 95, Indels: 18
0.90 0.09 0.02
Matches are distributed among these distances:
84 81 0.08
90 1 0.00
91 892 0.91
92 1 0.00
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (91 bp):
GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTATGAA
CTCTCCACTGGAAATGTTGAACCAAG
Found at i:202932 original size:39 final size:39
Alignment explanation
Indices: 202878--203020 Score: 132
Period size: 39 Copynumber: 3.5 Consensus size: 39
202868 AGGTTGAACA
202878 AGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATG
1 AGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATG
* * *
202917 AGTTCTTCTCATTATGAAC-TC-TC-CACTGGAAATGATGAGCCA-A
1 AGTTCTTCTCATTATGAACTTCTTCTCCCTCG---T--TG-G--ATG
*
202960 AGTTTTCTTCTCATTATGAACTTTTTCTCCCTCGTTGGATG
1 AG--TTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATG
203001 AGTTCTTCTCATTATGAACT
1 AGTTCTTCTCATTATGAACT
203021 CTCCACTGGA
Statistics
Matches: 83, Mismatches: 7, Indels: 28
0.70 0.06 0.24
Matches are distributed among these distances:
36 4 0.05
37 2 0.02
38 2 0.02
39 38 0.46
40 1 0.01
41 4 0.05
42 2 0.02
43 4 0.05
44 1 0.01
45 18 0.22
46 1 0.01
47 2 0.02
48 4 0.05
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (39 bp):
AGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATG
Found at i:203661 original size:36 final size:36
Alignment explanation
Indices: 203602--203710 Score: 128
Period size: 36 Copynumber: 3.0 Consensus size: 36
203592 AAAGATTTTG
*
203602 TGTTTCAAGAGAAATTGTCTCAAGCGAGACAAAATT
1 TGTTTCAAGTGAAATTGTCTCAAGCGAGACAAAATT
* * * * *
203638 TGTTTCAAGTGAAACTGTTTCAAGAGAGATAAAACT
1 TGTTTCAAGTGAAATTGTCTCAAGCGAGACAAAATT
* * *
203674 GGTTTCGAGTAAAAATTGTCTCAAGCGAGACAAAATT
1 TGTTTCAAGT-GAAATTGTCTCAAGCGAGACAAAATT
203711 CATGTTTTTT
Statistics
Matches: 58, Mismatches: 14, Indels: 1
0.79 0.19 0.01
Matches are distributed among these distances:
36 38 0.66
37 20 0.34
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.28
Consensus pattern (36 bp):
TGTTTCAAGTGAAATTGTCTCAAGCGAGACAAAATT
Found at i:203985 original size:22 final size:21
Alignment explanation
Indices: 203911--203988 Score: 63
Period size: 22 Copynumber: 3.7 Consensus size: 21
203901 CTTATGGATG
* *
203911 GCTCGAAGGACTTA-TCATCTT
1 GCTCGAAAGACTTACGCATC-T
*
203932 GCTCGAAAGACTTATAG-AT-T
1 GCTCGAAAGACTTA-CGCATCT
* *
203952 GCCCGAAGGACTTACGCATCAT
1 GCTCGAAAGACTTACGCATC-T
203974 GCTCGAAAGACTTAC
1 GCTCGAAAGACTTAC
203989 TGATGGCCCG
Statistics
Matches: 45, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
19 1 0.02
20 15 0.33
21 13 0.29
22 16 0.36
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (21 bp):
GCTCGAAAGACTTACGCATCT
Found at i:203987 original size:42 final size:42
Alignment explanation
Indices: 203907--204014 Score: 148
Period size: 42 Copynumber: 2.6 Consensus size: 42
203897 AGGTCTTATG
* *
203907 GATGGCTCGAAGGACTTA-TCATCTTGCTCGAAAGACTTA-T
1 GATGGCCCGAAGGACTTACTCATCATGCTCGAAAGACTTACT
* *
203947 AGATTGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACT
1 -GATGGCCCGAAGGACTTACTCATCATGCTCGAAAGACTTACT
*
203990 GATGGCCCGAATGACTTACTCATCA
1 GATGGCCCGAAGGACTTACTCATCA
204015 AGAAAACCTT
Statistics
Matches: 58, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
41 16 0.28
42 41 0.71
43 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (42 bp):
GATGGCCCGAAGGACTTACTCATCATGCTCGAAAGACTTACT
Found at i:204291 original size:39 final size:38
Alignment explanation
Indices: 204237--204469 Score: 264
Period size: 36 Copynumber: 6.2 Consensus size: 38
204227 AGTTTCTTAT
*
204237 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAC
1 AAAATCTT-TGTTTCAAGGGAAACTATCTCAAGCGAGAC
* *
204276 AAAATCTTGTGTTTCGAGGGAAACTATCTCAAACGAGAC
1 AAAATCTT-TGTTTCAAGGGAAACTATCTCAAGCGAGAC
* * *
204315 AAAATCTTCTGTTTCGAGGGAAACTGTCTCAAGGGAGAC
1 AAAATCTT-TGTTTCAAGGGAAACTATCTCAAGCGAGAC
* * *
204354 CAAA--TTTATTTCAAGGGAAACTGTCTCAAAG-GAGAC
1 AAAATCTTTGTTTCAAGGGAAACTATCTC-AAGCGAGAC
* *
204390 AAAA--TTTGTTTCAAGGGAAACTGTCTCAAGGGAGAC
1 AAAATCTTTGTTTCAAGGGAAACTATCTCAAGCGAGAC
* *
204426 TAAA--TTTGTTTCAAGGGAAACTATCTCAAGCGAGAT
1 AAAATCTTTGTTTCAAGGGAAACTATCTCAAGCGAGAC
204462 AAAATCTT
1 AAAATCTT
204470 CTTTAAAAAT
Statistics
Matches: 174, Mismatches: 16, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
35 3 0.02
36 89 0.51
37 5 0.03
38 2 0.01
39 75 0.43
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.27
Consensus pattern (38 bp):
AAAATCTTTGTTTCAAGGGAAACTATCTCAAGCGAGAC
Found at i:204422 original size:72 final size:74
Alignment explanation
Indices: 204237--204471 Score: 303
Period size: 72 Copynumber: 3.1 Consensus size: 74
204227 AGTTTCTTAT
* * *
204237 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGACAAAATCTTGTGTTTCGAGGGAAACTA
1 AAAA-CTTCTGTTTCGAGGGAAACTGTCTCAAGGGAGACAAAA--TT-TGTTTCAAGGGAAACTA
204302 TCTCAAACGAGAC
62 TCTCAAACGAGAC
* * *
204315 AAAATCTTCTGTTTCGAGGGAAACTGTCTCAAGGGAGACCAAATTTATTTCAAGGGAAACTGTCT
1 AAAA-CTTCTGTTTCGAGGGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAAGGGAAACTATCT
*
204380 CAAAGGAGAC
65 CAAACGAGAC
* *
204390 AAAA-TT-TGTTTCAAGGGAAACTGTCTCAAGGGAGACTAAATTTGTTTCAAGGGAAACTATCTC
1 AAAACTTCTGTTTCGAGGGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAAGGGAAACTATCTC
* *
204453 AAGCGAGAT
66 AAACGAGAC
204462 AAAATCTTCT
1 AAAA-CTTCT
204472 TTAAAAATAA
Statistics
Matches: 140, Mismatches: 14, Indels: 9
0.86 0.09 0.06
Matches are distributed among these distances:
72 63 0.45
73 2 0.01
74 2 0.01
75 31 0.22
76 2 0.01
78 40 0.29
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (74 bp):
AAAACTTCTGTTTCGAGGGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAAGGGAAACTATCTC
AAACGAGAC
Found at i:204566 original size:36 final size:36
Alignment explanation
Indices: 204521--204631 Score: 125
Period size: 36 Copynumber: 3.0 Consensus size: 36
204511 GTAAAAATTG
204521 TCTCAAGTGAGACAAATCTTGTTTTAAGAAAAACAA
1 TCTCAAGTGAGACAAATCTTGTTTTAAGAAAAACAA
** * * * **
204557 TCTTGAGTGAAATAAATTTCTT-TTTTGAGTAAAAACTG
1 TCTCAAGTGAGACAAA--TCTTGTTTTAAG-AAAAACAA
204595 TCTCAAGTGAGACAAATCTTGTTTTAAGAAAAACAA
1 TCTCAAGTGAGACAAATCTTGTTTTAAGAAAAACAA
204631 T
1 T
204632 AAATCTTCTG
Statistics
Matches: 57, Mismatches: 14, Indels: 8
0.72 0.18 0.10
Matches are distributed among these distances:
36 23 0.40
37 12 0.21
38 22 0.39
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.33
Consensus pattern (36 bp):
TCTCAAGTGAGACAAATCTTGTTTTAAGAAAAACAA
Found at i:204601 original size:74 final size:75
Alignment explanation
Indices: 204474--204631 Score: 273
Period size: 74 Copynumber: 2.1 Consensus size: 75
204464 AATCTTCTTT
* *
204474 AAAAATAATCTTGAGTGAAATGAAATGTCTTTTTCGAGTAAAAATTGTCTCAAGTGAGACAAATC
1 AAAAACAATCTTGAGTGAAATGAAATGTCTTTTTCGAGTAAAAACTGTCTCAAGTGAGACAAATC
204539 TTGTTTTAAG
66 TTGTTTTAAG
* *
204549 AAAAACAATCTTGAGTGAAAT-AAATTTCTTTTTTGAGTAAAAACTGTCTCAAGTGAGACAAATC
1 AAAAACAATCTTGAGTGAAATGAAATGTCTTTTTCGAGTAAAAACTGTCTCAAGTGAGACAAATC
204613 TTGTTTTAAG
66 TTGTTTTAAG
204623 AAAAACAAT
1 AAAAACAAT
204632 AAATCTTCTG
Statistics
Matches: 79, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
74 59 0.75
75 20 0.25
ACGTcount: A:0.41, C:0.10, G:0.15, T:0.34
Consensus pattern (75 bp):
AAAAACAATCTTGAGTGAAATGAAATGTCTTTTTCGAGTAAAAACTGTCTCAAGTGAGACAAATC
TTGTTTTAAG
Found at i:204604 original size:38 final size:37
Alignment explanation
Indices: 204487--204604 Score: 105
Period size: 36 Copynumber: 3.1 Consensus size: 37
204477 AATAATCTTG
* *
204487 AGTGAAATGAAATGTCTTTTTCGAGTAAAAATTGTCTCA
1 AGTGAAAT-AAAT-TCTTTTTTGAGTAAAAACTGTCTCA
* * * ** **
204526 AGTGAGACAAA-TCTTGTTTTAAG-AAAAACAATCTTG
1 AGTGAAATAAATTCTT-TTTTGAGTAAAAACTGTCTCA
204562 AGTGAAATAAATTTCTTTTTTGAGTAAAAACTGTCTCA
1 AGTGAAATAAA-TTCTTTTTTGAGTAAAAACTGTCTCA
204600 AGTGA
1 AGTGA
204605 GACAAATCTT
Statistics
Matches: 59, Mismatches: 16, Indels: 9
0.70 0.19 0.11
Matches are distributed among these distances:
36 21 0.36
37 11 0.19
38 21 0.36
39 6 0.10
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.35
Consensus pattern (37 bp):
AGTGAAATAAATTCTTTTTTGAGTAAAAACTGTCTCA
Found at i:208825 original size:35 final size:35
Alignment explanation
Indices: 208784--208905 Score: 126
Period size: 35 Copynumber: 3.4 Consensus size: 35
208774 GCAATACATG
208784 ATACATGTGATATGATATGAAATATATGGTTACAC
1 ATACATGTGATATGATATGAAATATATGGTTACAC
* *
208819 ATACATGTGGTATG---TGACAGATGAATAT-GTAATACATG
1 ATACATGTGATATGATATGA-A-AT--ATATGGT--TACA-C
208857 ATACATGTGATATGATATGAAATATATGGTTACAC
1 ATACATGTGATATGATATGAAATATATGGTTACAC
*
208892 ATACATGTGGTATG
1 ATACATGTGATATG
208906 TGACAGAAAA
Statistics
Matches: 71, Mismatches: 5, Indels: 22
0.72 0.05 0.22
Matches are distributed among these distances:
32 3 0.04
33 1 0.01
34 2 0.03
35 28 0.39
36 8 0.11
37 8 0.11
38 15 0.21
39 2 0.03
40 1 0.01
41 3 0.04
ACGTcount: A:0.38, C:0.08, G:0.20, T:0.34
Consensus pattern (35 bp):
ATACATGTGATATGATATGAAATATATGGTTACAC
Found at i:208835 original size:73 final size:73
Alignment explanation
Indices: 208745--208912 Score: 291
Period size: 73 Copynumber: 2.3 Consensus size: 73
208735 AGTGCATTTC
*
208745 TACATGTGAGTTATGTGACATATGAACATGCAATACATGATACATGTGATATGATATGAAATATA
1 TACATGTG-G-TATGTGACAGATGAACATGCAATACATGATACATGTGATATGATATGAAATATA
208810 TGGTTACACA
64 TGGTTACACA
* *
208820 TACATGTGGTATGTGACAGATGAATATGTAATACATGATACATGTGATATGATATGAAATATATG
1 TACATGTGGTATGTGACAGATGAACATGCAATACATGATACATGTGATATGATATGAAATATATG
208885 GTTACACA
66 GTTACACA
208893 TACATGTGGTATGTGACAGA
1 TACATGTGGTATGTGACAGA
208913 AAAGAAAGAA
Statistics
Matches: 90, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
73 81 0.90
74 1 0.01
75 8 0.09
ACGTcount: A:0.38, C:0.10, G:0.21, T:0.32
Consensus pattern (73 bp):
TACATGTGGTATGTGACAGATGAACATGCAATACATGATACATGTGATATGATATGAAATATATG
GTTACACA
Found at i:218905 original size:15 final size:15
Alignment explanation
Indices: 218885--218919 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
218875 AGGAACCTCA
*
218885 TCATCCTCGTCTTCT
1 TCATCCTCCTCTTCT
218900 TCATCCTCCTCTTCT
1 TCATCCTCCTCTTCT
218915 TCATC
1 TCATC
218920 ATCAGCATCG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.09, C:0.43, G:0.03, T:0.46
Consensus pattern (15 bp):
TCATCCTCCTCTTCT
Found at i:218909 original size:18 final size:18
Alignment explanation
Indices: 218882--218923 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
218872 CTGAGGAACC
*
218882 TCATCATCCTCGTCTTCT
1 TCATCATCCTCGTCTTCA
* *
218900 TCATCCTCCTCTTCTTCA
1 TCATCATCCTCGTCTTCA
218918 TCATCA
1 TCATCA
218924 GCATCGTCAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.14, C:0.40, G:0.02, T:0.43
Consensus pattern (18 bp):
TCATCATCCTCGTCTTCA
Found at i:221088 original size:21 final size:21
Alignment explanation
Indices: 221063--221537 Score: 378
Period size: 21 Copynumber: 22.8 Consensus size: 21
221053 TTTCCAAATT
*
221063 CGTTGCGATAGTCCAAGCTCG
1 CGTTGCGATAGTCCAAGTTCG
* *
221084 CGTTGCGATTTATTCCAAATT--
1 CGTTGCGA--TAGTCCAAGTTCG
*
221105 CGTTGCAATAGTCCAAGTT--
1 CGTTGCGATAGTCCAAGTTCG
*
221124 CGTTGCGATAGTCGAAGTTCG
1 CGTTGCGATAGTCCAAGTTCG
* * *
221145 CGTTGCGATTTATTTCAAATT--
1 CGTTGCGA--TAGTCCAAGTTCG
*
221166 CGTTACGATAGTCCAAGTTCG
1 CGTTGCGATAGTCCAAGTTCG
** *
221187 CGTTAAGATAGTCGAAGTTCG
1 CGTTGCGATAGTCCAAGTTCG
*
221208 CGTTGCGATTTATTCCAAGTT--
1 CGTTGCGA--TAGTCCAAGTTCG
*
221229 CGTTGCGATAGTCGAAGTTCG
1 CGTTGCGATAGTCCAAGTTCG
* *
221250 CGTTGCGATTTATTTCAAGTT--
1 CGTTGCGA--TAGTCCAAGTTCG
*
221271 CGTTGCGATAGTCGAAGTTCG
1 CGTTGCGATAGTCCAAGTTCG
*
221292 CGTTGCGATTTATTCCAAGTT--
1 CGTTGCGA--TAGTCCAAGTTCG
*
221313 CGTTGCGATAGTCGAAGTTCG
1 CGTTGCGATAGTCCAAGTTCG
* *
221334 CGTTGCGATTATTCCAAATT--
1 CGTTGCGA-TAGTCCAAGTTCG
221354 CGTTGCGATAGTCCAAGTTCG
1 CGTTGCGATAGTCCAAGTTCG
* *
221375 CATTGCGATAGTCGAAGTTCG
1 CGTTGCGATAGTCCAAGTTCG
*
221396 CGTTGCGATTTATTCCAAGTT--
1 CGTTGCGA--TAGTCCAAGTTCG
*
221417 TGTTGCGATAGTCCAAGTTCG
1 CGTTGCGATAGTCCAAGTTCG
*
221438 CGTTGCGATAGTCGAAGTTCG
1 CGTTGCGATAGTCCAAGTTCG
* *
221459 CATTGCGATTTATTCCAAGTT--
1 CGTTGCGA--TAGTCCAAGTTCG
*
221480 CGTTGCGATAGTCGAAGTTCG
1 CGTTGCGATAGTCCAAGTTCG
* *
221501 CGTTGCGATTTATTCCAAATT--
1 CGTTGCGA--TAGTCCAAGTTCG
221522 CGTTGCGATAGTCCAA
1 CGTTGCGATAGTCCAA
221538 AATCGCAACA
Statistics
Matches: 363, Mismatches: 58, Indels: 68
0.74 0.12 0.14
Matches are distributed among these distances:
19 95 0.26
20 8 0.02
21 185 0.51
22 8 0.02
23 67 0.18
ACGTcount: A:0.21, C:0.20, G:0.24, T:0.35
Consensus pattern (21 bp):
CGTTGCGATAGTCCAAGTTCG
Found at i:221100 original size:42 final size:42
Alignment explanation
Indices: 221054--221537 Score: 494
Period size: 42 Copynumber: 11.6 Consensus size: 42
221044 CAATGTGATT
* *
221054 TTCCAAATTCGTTGCGATAGTCCAAGCTCGCGTTGCGATTTA
1 TTCCAAGTTCGTTGCGATAGTCCAAGTTCGCGTTGCGATTTA
* *
221096 TTCCAAATTCGTTGCAATAGTCCAAGTT--CGTTGCGA--TA
1 TTCCAAGTTCGTTGCGATAGTCCAAGTTCGCGTTGCGATTTA
* * * * * *
221134 GTCGAAGTTCGCGTTGCGATTTATTTCAAATT--CGTTACGA--TA
1 TTCCAAGTT--CGTTGCGA--TAGTCCAAGTTCGCGTTGCGATTTA
* ** *
221176 GTCCAAGTTCGCGTTAAGATAGTCGAAGTTCGCGTTGCGATTTA
1 TTCCAAGTT--CGTTGCGATAGTCCAAGTTCGCGTTGCGATTTA
*
221220 TTCCAAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTA
1 TTCCAAGTTCGTTGCGATAGTCCAAGTTCGCGTTGCGATTTA
* *
221262 TTTCAAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTA
1 TTCCAAGTTCGTTGCGATAGTCCAAGTTCGCGTTGCGATTTA
*
221304 TTCCAAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGA-TTA
1 TTCCAAGTTCGTTGCGATAGTCCAAGTTCGCGTTGCGATTTA
* *
221345 TTCCAAATTCGTTGCGATAGTCCAAGTTCGCATTGCGA--TA
1 TTCCAAGTTCGTTGCGATAGTCCAAGTTCGCGTTGCGATTTA
* * * *
221385 GTCGAAGTTCGCGTTGCGATTTATTCCAAGTT--TGTTGCGA--TA
1 TTCCAAGTT--CGTTGCGA--TAGTCCAAGTTCGCGTTGCGATTTA
* * *
221427 GTCCAAGTTCGCGTTGCGATAGTCGAAGTTCGCATTGCGATTTA
1 TTCCAAGTT--CGTTGCGATAGTCCAAGTTCGCGTTGCGATTTA
*
221471 TTCCAAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTA
1 TTCCAAGTTCGTTGCGATAGTCCAAGTTCGCGTTGCGATTTA
*
221513 TTCCAAATTCGTTGCGATAGTCCAA
1 TTCCAAGTTCGTTGCGATAGTCCAA
221538 AATCGCAACA
Statistics
Matches: 385, Mismatches: 41, Indels: 32
0.84 0.09 0.07
Matches are distributed among these distances:
38 8 0.02
40 39 0.10
41 38 0.10
42 270 0.70
44 30 0.08
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.35
Consensus pattern (42 bp):
TTCCAAGTTCGTTGCGATAGTCCAAGTTCGCGTTGCGATTTA
Found at i:221219 original size:63 final size:63
Alignment explanation
Indices: 221063--221509 Score: 590
Period size: 63 Copynumber: 7.1 Consensus size: 63
221053 TTTCCAAATT
* * * *
221063 CGTTGCGATAGTCCAAGCTCGCGTTGCGATTTATTCCAAATTCGTTGCAATAGTCCAAGTT--
1 CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGATAGTCCAAGTTCG
* * *
221124 CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTTCAAATTCGTTACGATAGTCCAAGTTCG
1 CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGATAGTCCAAGTTCG
** *
221187 CGTTAAGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGATAGTCGAAGTTCG
1 CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGATAGTCCAAGTTCG
* * * *
221250 CGTTGCGATTTATTTC-AAGTT--CGTTGCGA--TAGTCGAAGTTCGCGTTGCGATTTATTCCAA
1 CGTTGCGA--TA-GTCGAAGTTCGCGTTGCGATTTATTCCAAGTT--CGTTGCGA--TAGTCCAA
221310 GTT--
59 GTTCG
*
221313 CGTTGCGATAGTCGAAGTTCGCGTTGCGA-TTATTCCAAATTCGTTGCGATAGTCCAAGTTCG
1 CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGATAGTCCAAGTTCG
* *
221375 CATTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAGTTTGTTGCGATAGTCCAAGTTCG
1 CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGATAGTCCAAGTTCG
* *
221438 CGTTGCGATAGTCGAAGTTCGCATTGCGATTTATTCCAAGTTCGTTGCGATAGTCGAAGTTCG
1 CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGATAGTCCAAGTTCG
221501 CGTTGCGAT
1 CGTTGCGAT
221510 TTATTCCAAA
Statistics
Matches: 340, Mismatches: 30, Indels: 30
0.85 0.08 0.08
Matches are distributed among these distances:
60 12 0.04
61 72 0.21
62 36 0.11
63 194 0.57
64 8 0.02
65 16 0.05
66 2 0.01
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.34
Consensus pattern (63 bp):
CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGATAGTCCAAGTTCG
Found at i:222457 original size:42 final size:42
Alignment explanation
Indices: 222395--222738 Score: 429
Period size: 42 Copynumber: 8.4 Consensus size: 42
222385 CGTTGCGATT
222395 TTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAAC
1 TTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAAC
* * * *
222437 TTCGACTATCGCAACAAATTTGAAATAAATCGCAACGTGAAC
1 TTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAAC
222479 TTGGACTATCGCAACGAATTTGG-A-AAATCGCAACGCGAAC
1 TTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAAC
* * **
222519 TTTGACTATCGCAACGCGATTTTGG--TTTATCGCAACGCGAAC
1 TTGGACTATCGCAA--CGAATTTGGAATAAATCGCAACGCGAAC
* * * *
222561 TTCGACTATCGCAACGAACTTGGACT--ATCACAA--CGAAC
1 TTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAAC
* *
222599 TTGGACTATCGCAACGAATTTGTAATAAATCGCAACACGAAC
1 TTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAAC
*
222641 TTGGACTATCGCAACAAATTTGGAATAAATCGCAACGCGAAC
1 TTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAAC
* *
222683 TTGGACTATCGCAACGAATTTGG-A-AAATCGTAACACGAAC
1 TTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAAC
* *
222723 TTCGACTATCACAACG
1 TTGGACTATCGCAACG
222739 CGAACTTGGA
Statistics
Matches: 264, Mismatches: 29, Indels: 20
0.84 0.09 0.06
Matches are distributed among these distances:
38 27 0.10
40 75 0.28
41 2 0.01
42 160 0.61
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.23
Consensus pattern (42 bp):
TTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAAC
Found at i:222664 original size:61 final size:60
Alignment explanation
Indices: 222465--222664 Score: 185
Period size: 61 Copynumber: 3.3 Consensus size: 60
222455 TTTGAAATAA
* * * *
222465 ATCGCAACGTGAACTTGGACTATCGCAACGAATTTGGA-AAATCGCAACGCGAACTTTGACT
1 ATCGCAAC--GAATTTGGACTATCGCAACGAATTTGAATAAATCGCAACACGAACTTGGACT
* ** * *
222526 ATCGCAACGCGATTTTGGTTTATCGCAACGCGAACTTCGACT--ATCGC-A-ACGAACTTGGACT
1 ATCGCAA--CGAATTTGGACTATCGCAA--CGAA-TTTGAATAAATCGCAACACGAACTTGGACT
* *
222587 ATCACAACGAACTTGGACTATCGCAACGAATTTGTAATAAATCGCAACACGAACTTGGACT
1 ATCGCAACGAATTTGGACTATCGCAACGAATTTG-AATAAATCGCAACACGAACTTGGACT
*
222648 ATCGCAACAAATTTGGA
1 ATCGCAACGAATTTGGA
222665 ATAAATCGCA
Statistics
Matches: 109, Mismatches: 19, Indels: 22
0.73 0.13 0.15
Matches are distributed among these distances:
56 3 0.03
57 6 0.06
59 20 0.18
60 1 0.01
61 65 0.60
62 1 0.01
63 10 0.09
64 3 0.03
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (60 bp):
ATCGCAACGAATTTGGACTATCGCAACGAATTTGAATAAATCGCAACACGAACTTGGACT
Found at i:222756 original size:204 final size:204
Alignment explanation
Indices: 222395--222763 Score: 612
Period size: 204 Copynumber: 1.8 Consensus size: 204
222385 CGTTGCGATT
*
222395 TTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAACAAATTTGA
1 TTGGACTATCGCAACGAATTTGGAATAAATCGCAACACGAACTTCGACTATCGCAACAAATTTGA
* * *
222460 AATAAATCGCAACGTGAACTTGGACTATCGCAACGAATTTGGAAAATCGCAACGCGAACTTTGAC
66 AATAAATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAAAATCGCAACACGAACTTCGAC
* ** **
222525 TATCGCAACGCGATTTTGGTTTATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGACTATC
131 TATCACAACGCGAACTTGGACTATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGACTATC
222590 ACAACGAAC
196 ACAACGAAC
* * *
222599 TTGGACTATCGCAACGAATTTGTAATAAATCGCAACACGAACTTGGACTATCGCAACAAATTTGG
1 TTGGACTATCGCAACGAATTTGGAATAAATCGCAACACGAACTTCGACTATCGCAACAAATTTGA
*
222664 AATAAATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAAAATCGTAACACGAACTTCGAC
66 AATAAATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAAAATCGCAACACGAACTTCGAC
*
222729 TATCACAACGCGAACTTGGACTATCGCAATGCGAA
131 TATCACAACGCGAACTTGGACTATCGCAACGCGAA
222764 TATGTAAATC
Statistics
Matches: 151, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
204 151 1.00
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.23
Consensus pattern (204 bp):
TTGGACTATCGCAACGAATTTGGAATAAATCGCAACACGAACTTCGACTATCGCAACAAATTTGA
AATAAATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAAAATCGCAACACGAACTTCGAC
TATCACAACGCGAACTTGGACTATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGACTATC
ACAACGAAC
Found at i:222763 original size:21 final size:20
Alignment explanation
Indices: 222395--222757 Score: 247
Period size: 21 Copynumber: 17.7 Consensus size: 20
222385 CGTTGCGATT
*
222395 TTGGACTATCGCAA-CGAAT
1 TTGGACTATCGCAACCGAAC
*
222414 TTGGAATAAATCGCAACGCGAAC
1 TTGGACT--ATCGCAAC-CGAAC
* * *
222437 TTCGACTATCGCAA-CAAAT
1 TTGGACTATCGCAACCGAAC
* * *
222456 TTGAAATAAATCGCAACGTGAAC
1 TTGGACT--ATCGCAAC-CGAAC
*
222479 TTGGACTATCGCAA-CGAAT
1 TTGGACTATCGCAACCGAAC
**
222498 TTGGAAAATCGCAACGCGAAC
1 TTGGACTATCGCAAC-CGAAC
* **
222519 TTTGACTATCGCAACGCGATT
1 TTGGACTATCGCAAC-CGAAC
**
222540 TTGGTTTATCGCAACGCGAAC
1 TTGGACTATCGCAAC-CGAAC
*
222561 TTCGACTATCGCAA-CGAAC
1 TTGGACTATCGCAACCGAAC
*
222580 TTGGACTATCACAA-CGAAC
1 TTGGACTATCGCAACCGAAC
*
222599 TTGGACTATCGCAA-CGAAT
1 TTGGACTATCGCAACCGAAC
* *
222618 TTGTAATAAATCGCAACACGAAC
1 TTGGACT--ATCGCAAC-CGAAC
* *
222641 TTGGACTATCGCAA-CAAAT
1 TTGGACTATCGCAACCGAAC
*
222660 TTGGAATAAATCGCAACGCGAAC
1 TTGGACT--ATCGCAAC-CGAAC
*
222683 TTGGACTATCGCAA-CGAAT
1 TTGGACTATCGCAACCGAAC
** *
222702 TTGGAAAATCGTAACACGAAC
1 TTGGACTATCGCAAC-CGAAC
* *
222723 TTCGACTATCACAACGCGAAC
1 TTGGACTATCGCAAC-CGAAC
222744 TTGGACTATCGCAA
1 TTGGACTATCGCAA
222758 TGCGAATATG
Statistics
Matches: 264, Mismatches: 60, Indels: 38
0.73 0.17 0.10
Matches are distributed among these distances:
19 96 0.36
21 134 0.51
23 34 0.13
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.23
Consensus pattern (20 bp):
TTGGACTATCGCAACCGAAC
Found at i:224130 original size:60 final size:61
Alignment explanation
Indices: 224034--224148 Score: 171
Period size: 60 Copynumber: 1.9 Consensus size: 61
224024 TTACAACATA
*
224034 TATCCCTAAACTATAATTCTCATTCTAAATTAGT-CCCCAAACTTTTGAATATTCTAATTT
1 TATCCCTAAACTATAATTCTCATTCTAAATTAGTCCCCCAAAATTTTGAATATTCTAATTT
* * *
224094 TATCCCTAAACTAT-GTATCTCTTTCTAAATTGGTCCCCCAAAATTTTGAATATTC
1 TATCCCTAAACTATAAT-TCTCATTCTAAATTAGTCCCCCAAAATTTTGAATATTC
224149 CAAATTCATC
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
59 1 0.02
60 29 0.59
61 19 0.39
ACGTcount: A:0.31, C:0.23, G:0.05, T:0.41
Consensus pattern (61 bp):
TATCCCTAAACTATAATTCTCATTCTAAATTAGTCCCCCAAAATTTTGAATATTCTAATTT
Found at i:239434 original size:30 final size:30
Alignment explanation
Indices: 239398--239454 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
239388 AAAATGGCTT
*
239398 CCTTCAAGAAGGACTATC-CGAAGAAGGATA
1 CCTTCAAGAAGGACCATCTC-AAGAAGGATA
*
239428 CCTTCAAGAGGGACCATCTCAAGAAGG
1 CCTTCAAGAAGGACCATCTCAAGAAGG
239455 TGCTTGTCGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.96
31 1 0.04
ACGTcount: A:0.37, C:0.23, G:0.25, T:0.16
Consensus pattern (30 bp):
CCTTCAAGAAGGACCATCTCAAGAAGGATA
Found at i:239517 original size:30 final size:30
Alignment explanation
Indices: 239446--239604 Score: 218
Period size: 30 Copynumber: 5.4 Consensus size: 30
239436 AGGGACCATC
*
239446 TCAAGAAGGT-GCTTGTCGTGAAATGCCCCA
1 TCAAGAA-GTAGCTTGTCATGAAATGCCCCA
* *
239476 T---GAAGTTGCTTGTCAGGAAATGCCCCA
1 TCAAGAAGTAGCTTGTCATGAAATGCCCCA
* *
239503 TCAAGAAGTAGCTTGTCATGAAGTGCCGCA
1 TCAAGAAGTAGCTTGTCATGAAATGCCCCA
*
239533 TCAAGAAGTAGCTTGTCATGAAATGCCGCA
1 TCAAGAAGTAGCTTGTCATGAAATGCCCCA
*
239563 TCAAGAAGTAACTTGTCATGAAATGCCCCA
1 TCAAGAAGTAGCTTGTCATGAAATGCCCCA
239593 TCAAGAAGTAGC
1 TCAAGAAGTAGC
239605 CTCTCAAGAA
Statistics
Matches: 115, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
26 2 0.02
27 22 0.19
30 91 0.79
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.23
Consensus pattern (30 bp):
TCAAGAAGTAGCTTGTCATGAAATGCCCCA
Found at i:249130 original size:27 final size:27
Alignment explanation
Indices: 249095--249168 Score: 139
Period size: 27 Copynumber: 2.7 Consensus size: 27
249085 ATTTTAAAAT
*
249095 TTTAGTGATAAAATTAAAACTTTTGAA
1 TTTAATGATAAAATTAAAACTTTTGAA
249122 TTTAATGATAAAATTAAAACTTTTGAA
1 TTTAATGATAAAATTAAAACTTTTGAA
249149 TTTAATGATAAAATTAAAAC
1 TTTAATGATAAAATTAAAAC
249169 ATAAATTAAC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.49, C:0.04, G:0.08, T:0.39
Consensus pattern (27 bp):
TTTAATGATAAAATTAAAACTTTTGAA
Found at i:250074 original size:59 final size:63
Alignment explanation
Indices: 250011--250150 Score: 146
Period size: 64 Copynumber: 2.3 Consensus size: 63
250001 AGTTTAACTC
**
250011 ACTCAAATGGAAATTATT-T-AT-GTTTTA-TTATACAATGTTTATAATTTAATTAATTTCTA
1 ACTCAAATGGAAATTATTCTGATAGTTTTATTTATACAATGTGCATAATTTAATTAATTTCTA
* * * *
250070 ACTCAAAT-GAAAGATATTCGTGTTAGTTTTATTTATGCAATGTGCATAATTTATTTAATTTCTA
1 ACTCAAATGGAAA-TTATTC-TGATAGTTTTATTTATACAATGTGCATAATTTAATTAATTTCTA
** *
250134 TTTCAAATGAAAATTAT
1 ACTCAAATGGAAATTAT
250151 GCCAGCTAAT
Statistics
Matches: 64, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
58 4 0.06
59 12 0.19
61 1 0.02
62 1 0.02
63 6 0.09
64 37 0.58
65 3 0.05
ACGTcount: A:0.36, C:0.08, G:0.09, T:0.46
Consensus pattern (63 bp):
ACTCAAATGGAAATTATTCTGATAGTTTTATTTATACAATGTGCATAATTTAATTAATTTCTA
Found at i:253808 original size:6 final size:6
Alignment explanation
Indices: 253797--253827 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
253787 ACTGCAGCTG
253797 GGGTTA GGGTTA GGGTTA GGGTTA GGGTTA G
1 GGGTTA GGGTTA GGGTTA GGGTTA GGGTTA G
253828 TTAGATGCCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32
Consensus pattern (6 bp):
GGGTTA
Found at i:255878 original size:15 final size:16
Alignment explanation
Indices: 255850--255884 Score: 63
Period size: 15 Copynumber: 2.2 Consensus size: 16
255840 CCGTAGGACC
255850 ACTACATCCCCGAAGG
1 ACTACATCCCCGAAGG
255866 ACTACAT-CCCGAAGG
1 ACTACATCCCCGAAGG
255881 ACTA
1 ACTA
255885 TTATACCCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 12 0.63
16 7 0.37
ACGTcount: A:0.34, C:0.34, G:0.17, T:0.14
Consensus pattern (16 bp):
ACTACATCCCCGAAGG
Found at i:256033 original size:23 final size:26
Alignment explanation
Indices: 255996--256046 Score: 81
Period size: 23 Copynumber: 2.1 Consensus size: 26
255986 TTCTCTTGTG
255996 ATCATGTATCTCATATCAC-T-TCAT
1 ATCATGTATCTCATATCACATGTCAT
256020 ATCATGT-TCTCATATCACATGTCAT
1 ATCATGTATCTCATATCACATGTCAT
256045 AT
1 AT
256047 AACATATCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
23 11 0.44
24 8 0.32
25 6 0.24
ACGTcount: A:0.29, C:0.24, G:0.06, T:0.41
Consensus pattern (26 bp):
ATCATGTATCTCATATCACATGTCAT
Found at i:257272 original size:29 final size:29
Alignment explanation
Indices: 257230--257290 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
257220 TATTCATTCA
257230 TTCTATTTTAATCACCAAAATCTGAAACT
1 TTCTATTTTAATCACCAAAATCTGAAACT
257259 TTCTATTTTAATCACCAAAATCTGAAACT
1 TTCTATTTTAATCACCAAAATCTGAAACT
257288 TTC
1 TTC
257291 CAATTTAGTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.36, C:0.21, G:0.03, T:0.39
Consensus pattern (29 bp):
TTCTATTTTAATCACCAAAATCTGAAACT
Found at i:257297 original size:29 final size:29
Alignment explanation
Indices: 257236--257302 Score: 107
Period size: 29 Copynumber: 2.3 Consensus size: 29
257226 TTCATTCTAT
* *
257236 TTTAATCACCAAAATCTGAAACTTTCTAT
1 TTTAATCACCAAAATCTGAAACTTTCCAA
257265 TTTAATCACCAAAATCTGAAACTTTCCAA
1 TTTAATCACCAAAATCTGAAACTTTCCAA
*
257294 TTTAGTCAC
1 TTTAATCAC
257303 TAACCTGGTA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.37, C:0.22, G:0.04, T:0.36
Consensus pattern (29 bp):
TTTAATCACCAAAATCTGAAACTTTCCAA
Found at i:261717 original size:38 final size:38
Alignment explanation
Indices: 261669--261786 Score: 139
Period size: 41 Copynumber: 3.0 Consensus size: 38
261659 ATCATTACAT
261669 TAATCTTTTGGTGTTTTAATAAAAATGGGGT-GGTTTAG
1 TAATCTTTTGGTGTTTTAATAAAAAT-GGGTAGGTTTAG
* *
261707 TAATCTTTTGGTGTTTTAGTAAAAAAAATTGGTAGGTTTAG
1 TAATCTTTTGGTG-TTT--TAATAAAAATGGGTAGGTTTAG
* * *
261748 TAATCTTTTAGTGCTTTAATAAAAATTTGGTAGGTTTAG
1 TAATCTTTTGGTGTTTTAATAAAAA-TGGGTAGGTTTAG
261787 AAAAATATTT
Statistics
Matches: 70, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
38 21 0.30
39 16 0.23
40 5 0.07
41 28 0.40
ACGTcount: A:0.30, C:0.03, G:0.22, T:0.45
Consensus pattern (38 bp):
TAATCTTTTGGTGTTTTAATAAAAATGGGTAGGTTTAG
Found at i:261806 original size:21 final size:20
Alignment explanation
Indices: 261768--261808 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
261758 GTGCTTTAAT
*
261768 AAAAATTTGGTAGGTTTAGA
1 AAAAATTTGGTAGATTTAGA
*
261788 AAAATATTTGGTATATTTAGA
1 AAAA-ATTTGGTAGATTTAGA
261809 CTAACCCTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.41, C:0.00, G:0.20, T:0.39
Consensus pattern (20 bp):
AAAAATTTGGTAGATTTAGA
Found at i:262860 original size:2 final size:2
Alignment explanation
Indices: 262853--262877 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
262843 GCTACAAATT
262853 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
262878 TATATATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:263824 original size:17 final size:19
Alignment explanation
Indices: 263783--263824 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
263773 TTGGAGCCTT
* *
263783 AGTGCATCGGTGCACTAAG
1 AGTGCACCGATGCACTAAG
263802 AGTGCACCGATGCA-TAA-
1 AGTGCACCGATGCACTAAG
263819 AGTGCA
1 AGTGCA
263825 TTTGATGTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 6 0.29
18 3 0.14
19 12 0.57
ACGTcount: A:0.31, C:0.21, G:0.29, T:0.19
Consensus pattern (19 bp):
AGTGCACCGATGCACTAAG
Found at i:263889 original size:64 final size:63
Alignment explanation
Indices: 263803--264011 Score: 194
Period size: 65 Copynumber: 3.2 Consensus size: 63
263793 TGCACTAAGA
* *
263803 GTGCACCGATGCAT-AAAGTGCATTTGATGTTTCAAAATAGTC-TGAGTGCATCGATGCATGTCT
1 GTGCATCGATGCATCAAA-TGCATTCGATGTTTCAAAATA-TCATGAGTGCATCGATGCATGT-T
263866 T
63 T
* * *
263867 GTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAA-ACCTTGAGTGCATCGATGCATGGTA
1 GTGCATCGATGCATCAAATGCATTCGATG-TTTCA-AAATATCATGAGTGCATCGATGCAT-GTT
263931 T
63 T
* * **
263932 GTGCATCTATGCATAAAATGCATTCGATG-TTCAATTTATTCAATG-GTGCATCGATGCATGGAT
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCAAAATA-TC-ATGAGTGCATCGATGCAT-G-T
*
263995 TG
62 TT
*
263997 GTGCATCGGTGCATC
1 GTGCATCGATGCATC
264012 CCTCTGAAAA
Statistics
Matches: 121, Mismatches: 15, Indels: 17
0.79 0.10 0.11
Matches are distributed among these distances:
62 1 0.01
63 5 0.04
64 41 0.34
65 69 0.57
66 5 0.04
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (63 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTCAAAATATCATGAGTGCATCGATGCATGTTT
Found at i:265925 original size:13 final size:13
Alignment explanation
Indices: 265894--265919 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
265884 CAAAGACATC
265894 AAATTTAAAATTT
1 AAATTTAAAATTT
265907 AAATTTAAAATTT
1 AAATTTAAAATTT
265920 TGATTTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
AAATTTAAAATTT
Found at i:266066 original size:47 final size:47
Alignment explanation
Indices: 265997--266090 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
265987 AAACTCTAGT
265997 TTGTAATCATCAAACAATCAATGCCCGATATAATGTTCATCCTAGAA
1 TTGTAATCATCAAACAATCAATGCCCGATATAATGTTCATCCTAGAA
266044 TTGTAATCATCAAACAATCAATGCCCGATATAATGTTCATCCTAGAA
1 TTGTAATCATCAAACAATCAATGCCCGATATAATGTTCATCCTAGAA
266091 CTAATCAAAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (47 bp):
TTGTAATCATCAAACAATCAATGCCCGATATAATGTTCATCCTAGAA
Found at i:266398 original size:20 final size:20
Alignment explanation
Indices: 266373--266424 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
266363 ACCCGACGGA
266373 TGCATCGATGCATGGCCTTG
1 TGCATCGATGCATGGCCTTG
*
266393 TGCATCGATGCATGGCTTTG
1 TGCATCGATGCATGGCCTTG
266413 TGCATCGATGCA
1 TGCATCGATGCA
266425 CATTCCAGGT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.17, C:0.23, G:0.29, T:0.31
Consensus pattern (20 bp):
TGCATCGATGCATGGCCTTG
Found at i:266441 original size:23 final size:24
Alignment explanation
Indices: 266411--266473 Score: 64
Period size: 23 Copynumber: 2.8 Consensus size: 24
266401 TGCATGGCTT
266411 TGTGCATCGATGCACATTCCA-GG
1 TGTGCATCGATGCACATTCCATGG
*
266434 TGTGCATC-AGTGCACCTT-CATGG
1 TGTGCATCGA-TGCACATTCCATGG
*
266457 TGT--ATCGATGTACATTC
1 TGTGCATCGATGCACATTC
266474 AAAGGGATAG
Statistics
Matches: 33, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
21 9 0.27
22 4 0.12
23 20 0.61
ACGTcount: A:0.21, C:0.24, G:0.24, T:0.32
Consensus pattern (24 bp):
TGTGCATCGATGCACATTCCATGG
Found at i:270557 original size:117 final size:118
Alignment explanation
Indices: 270337--270557 Score: 250
Period size: 117 Copynumber: 1.9 Consensus size: 118
270327 CTTTCAAATC
* * *
270337 AAAATTTTATTTTTCAATACTTTCAAATTTCATTTTTGAAAGCTCTAAATCCTTCTTCAAGAGTT
1 AAAATTTTATTTTTCAAAACTTTCAAATTTCAGTTTTGAAAGCTCTAAATCCTTCTTCAACAGTT
* *
270402 TATTTTGATTTTCAAAATCCATTTTCGTTTCTAGAAGAATTTTGTTTAATTTG
66 TATTTTGATTTTCAAAATCCATTTTAGTTTCTAAAAGAATTTTGTTTAATTTG
* * * * * * *
270455 AAAA-TTTCTTTTTCAAAATTTTCAGATTTTAGTTTTGAAAGCTCTAACTCTTTTTTCAACA-TT
1 AAAATTTTATTTTTCAAAACTTTCAAATTTCAGTTTTGAAAGCTCTAAATCCTTCTTCAACAGTT
* * * **
270518 TCATTTTGTTTTTCCAAGTCTGTTTTAGCTTTC-AAAAGAA
66 T-ATTTTGATTTTCAAAATCCATTTTAG-TTTCTAAAAGAA
270558 GATCATTTTT
Statistics
Matches: 84, Mismatches: 17, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
116 3 0.04
117 73 0.87
118 8 0.10
ACGTcount: A:0.29, C:0.14, G:0.09, T:0.49
Consensus pattern (118 bp):
AAAATTTTATTTTTCAAAACTTTCAAATTTCAGTTTTGAAAGCTCTAAATCCTTCTTCAACAGTT
TATTTTGATTTTCAAAATCCATTTTAGTTTCTAAAAGAATTTTGTTTAATTTG
Found at i:271926 original size:18 final size:19
Alignment explanation
Indices: 271878--271926 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
271868 TTGGAGCCTT
*
271878 AGTGCATCGGTGCACTAAG
1 AGTGCATCGATGCACTAAG
271897 AGTGCATCGATGCA-TAA-
1 AGTGCATCGATGCACTAAG
271914 AGTGCATTCGATG
1 AGTGCA-TCGATG
271927 TTTCAAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 6 0.21
18 9 0.32
19 13 0.46
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (19 bp):
AGTGCATCGATGCACTAAG
Found at i:272020 original size:47 final size:47
Alignment explanation
Indices: 271896--272020 Score: 157
Period size: 47 Copynumber: 2.7 Consensus size: 47
271886 GGTGCACTAA
* *
271896 GAGTGCATCGATGCATAAAGTGCATTCGATG--TTTCAAAATAGCCT
1 GAGTGCATCGATGCATAAAATGCATTCGATGTTTTTCAAAATACCCT
* ** *
271941 GAGTGCATCGATGCATCAAATGCATTTAATGTTTTTTATAAA-ACCCT
1 GAGTGCATCGATGCATAAAATGCATTCGATGTTTTTCA-AAATACCCT
*
271988 GAGTGTATCGATGCATAAAATGCATTCGATGTT
1 GAGTGCATCGATGCATAAAATGCATTCGATGTT
272021 CAATTTAGTC
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
45 27 0.40
47 37 0.55
48 3 0.04
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (47 bp):
GAGTGCATCGATGCATAAAATGCATTCGATGTTTTTCAAAATACCCT
Found at i:277731 original size:20 final size:20
Alignment explanation
Indices: 277670--277898 Score: 221
Period size: 20 Copynumber: 11.4 Consensus size: 20
277660 GATTTTCAAG
* ** *
277670 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGTATCCGTA
* *
277690 AATCGCAACGCG-AACACATA
1 AATCGCAACGCGTATC-CGTA
277710 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
* *
277730 AACCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
* *
277750 AATAGCAACGCGTATCCATA
1 AATCGCAACGCGTATCCGTA
*
277770 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
277790 TATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
277810 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
277830 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
277850 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
277870 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
277890 AATCACAAC
1 AATCGCAAC
277899 ACTGAAATTT
Statistics
Matches: 173, Mismatches: 30, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
19 2 0.01
20 169 0.98
21 2 0.01
ACGTcount: A:0.38, C:0.26, G:0.17, T:0.19
Consensus pattern (20 bp):
AATCGCAACGCGTATCCGTA
Found at i:278630 original size:24 final size:24
Alignment explanation
Indices: 278591--278637 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
278581 AAATTTGGTC
278591 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCGGACTTTGATA
*
278615 TTGGTCAATA-CACGGATTTTGAT
1 TTGGTCAATATC-CGGACTTTGAT
278638 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGGTCAATATCCGGACTTTGATA
Found at i:278829 original size:12 final size:12
Alignment explanation
Indices: 278812--278836 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
278802 ATATAATCCT
278812 GAAGAAGAAAAA
1 GAAGAAGAAAAA
278824 GAAGAAGAAAAA
1 GAAGAAGAAAAA
278836 G
1 G
278837 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:281168 original size:33 final size:34
Alignment explanation
Indices: 281098--281263 Score: 192
Period size: 33 Copynumber: 4.8 Consensus size: 34
281088 GCATTTGACT
** * * * *
281098 ATCGCAACACGGAAATTACAATCGCAACGAGAGA
1 ATCGCAATGCGGAAATGAAAATCGCAACAAGAAA
*
281132 ATCGCAATGC-GAAATGAAAATCCCAACAAGAAA
1 ATCGCAATGCGGAAATGAAAATCGCAACAAGAAA
281165 ATCGCAATGCGGAAATGAAAATCGCAATGCGAAATGAAA
1 ATCGCAATGCGGAAATGAAAATCGCAA--C--AA-GAAA
* *
281204 ATCGCAATGC-GAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGGAAATGAAAATCGCAACAAGAAA
281237 ATCGCAATGCGGAAATGAAAATCGCAA
1 ATCGCAATGCGGAAATGAAAATCGCAA
281264 TGCGAAATGA
Statistics
Matches: 115, Mismatches: 10, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
33 41 0.36
34 40 0.35
36 2 0.02
38 18 0.16
39 14 0.12
ACGTcount: A:0.46, C:0.19, G:0.21, T:0.13
Consensus pattern (34 bp):
ATCGCAATGCGGAAATGAAAATCGCAACAAGAAA
Found at i:281224 original size:72 final size:72
Alignment explanation
Indices: 281131--281340 Score: 291
Period size: 72 Copynumber: 2.9 Consensus size: 72
281121 GCAACGAGAG
*
281131 AATCGCAATGCGAAATGAAAATCCCAACAAGAAAATCGCAATGCGGAAATGAAAATCGCAATGCG
1 AATCGCAATGCGAAATGAAAATCGCAACAAGAAAATCGCAATGCGGAAATGAAAATCGCAATGCG
281196 AAATGAA
66 AAATGAA
* *
281203 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGGAAATGAAAATCGCAATGCG
1 AATCGCAATGCGAAATGAAAATCGCAACAAGAAAATCGCAATGCGGAAATGAAAATCGCAATGCG
281268 AAATGAA
66 AAATGAA
* * * * * *
281275 AATCGCAACGAGAGAATCG-CAATGCGGAA-ATGAAAATCGCAATGC-GAAATGAAAATCGCATT
1 AATCGCAATGCGA-AAT-GAAAAT-CGCAACAAGAAAATCGCAATGCGGAAATGAAAATCGCAAT
281337 GCGA
63 GCGA
281341 TTCTCTCGTT
Statistics
Matches: 124, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
72 100 0.81
73 19 0.15
74 5 0.04
ACGTcount: A:0.46, C:0.18, G:0.22, T:0.14
Consensus pattern (72 bp):
AATCGCAATGCGAAATGAAAATCGCAACAAGAAAATCGCAATGCGGAAATGAAAATCGCAATGCG
AAATGAA
Found at i:281252 original size:53 final size:52
Alignment explanation
Indices: 281117--281334 Score: 311
Period size: 53 Copynumber: 4.1 Consensus size: 52
281107 CGGAAATTAC
*
281117 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCCCAA--C--AA-GAA
1 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
*
281164 AATCGCAATGCGGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAA--C-G--A-GAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
281222 AATCGCAACGAGAGAATCGCAATGCGGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAACGAGAGAATCGCAATGC-GAAATGAAAATCGCAATGCGAAATGAA
281275 AATCGCAACGAGAGAATCGCAATGCGGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAACGAGAGAATCGCAATGC-GAAATGAAAATCGCAATGCGAAATGAA
281328 AATCGCA
1 AATCGCA
281335 TTGCGATTCT
Statistics
Matches: 156, Mismatches: 3, Indels: 18
0.88 0.02 0.10
Matches are distributed among these distances:
47 8 0.05
49 1 0.01
50 1 0.01
52 14 0.09
53 116 0.74
55 2 0.01
56 1 0.01
57 2 0.01
58 11 0.07
ACGTcount: A:0.46, C:0.18, G:0.22, T:0.13
Consensus pattern (52 bp):
AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
Found at i:281374 original size:53 final size:52
Alignment explanation
Indices: 281311--281426 Score: 160
Period size: 53 Copynumber: 2.2 Consensus size: 52
281301 GAAATGAAAA
*
281311 TCGCAATGCGAAATGAAAATCGCATTGCGATTCTCTCGTTGCGATTTTCATT
1 TCGCATTGCGAAATGAAAATCGCATTGCGATTCTCTCGTTGCGATTTTCATT
** ** **
281363 TCCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATT
1 T-CGCATTGCGAAATGAAAATCGCATTGCGATTCTCTCGTTGCGATTTTCATT
281416 TCGCATTGCGA
1 TCGCATTGCGA
281427 TTTTCATTTC
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
52 11 0.20
53 45 0.80
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.39
Consensus pattern (52 bp):
TCGCATTGCGAAATGAAAATCGCATTGCGATTCTCTCGTTGCGATTTTCATT
Found at i:281389 original size:19 final size:19
Alignment explanation
Indices: 281349--281436 Score: 123
Period size: 19 Copynumber: 4.8 Consensus size: 19
281339 GATTCTCTCG
281349 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
281369 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
281388 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
281402 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
281421 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
281437 AACATAATGC
Statistics
Matches: 61, Mismatches: 2, Indels: 11
0.82 0.03 0.15
Matches are distributed among these distances:
14 6 0.10
16 7 0.11
17 7 0.11
19 26 0.43
20 15 0.25
ACGTcount: A:0.14, C:0.23, G:0.16, T:0.48
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:281546 original size:14 final size:14
Alignment explanation
Indices: 281527--281563 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
281517 CATCAATTAC
281527 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
281541 ACAAATCATCTTTT
1 ACAAATCAACTTTT
281555 ACAAATCAA
1 ACAAATCAA
281564 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:283526 original size:19 final size:19
Alignment explanation
Indices: 283484--283656 Score: 123
Period size: 19 Copynumber: 9.6 Consensus size: 19
283474 TAGTTTACTT
* *
283484 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
*
283504 TCGCAACGCGAAATGAGAA
1 TCGCAACGCGAAATGAAAA
* **
283523 TCGCAACGAGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
**
283542 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
*
283561 TCACAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
* *
283580 TCACAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
* *
283594 TCGCAATGCGAAATAAAAA
1 TCGCAACGCGAAATGAAAA
*
283613 TCGCAA--CG--A-GAGAA
1 TCGCAACGCGAAATGAAAA
*
283627 TCGCAACACGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
283646 TCGCAATGCGA
1 TCGCAACGCGA
283657 TTTTGGTTTC
Statistics
Matches: 123, Mismatches: 20, Indels: 21
0.75 0.12 0.13
Matches are distributed among these distances:
14 16 0.13
15 1 0.01
16 7 0.06
17 6 0.05
18 1 0.01
19 80 0.65
20 12 0.10
ACGTcount: A:0.48, C:0.24, G:0.18, T:0.10
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:283648 original size:33 final size:33
Alignment explanation
Indices: 283559--283651 Score: 132
Period size: 33 Copynumber: 2.8 Consensus size: 33
283549 GCGAAACCAA
* *
283559 AATCACAACGCGAAATGAAAATCACAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGACAG
* * *
283592 AATCGCAATGCGAAATAAAAATCGCAACGAGAG
1 AATCGCAACGCGAAATGAAAATCGCAACGACAG
*
283625 AATCGCAACACGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
283652 TGCGATTTTG
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 52 1.00
ACGTcount: A:0.51, C:0.22, G:0.17, T:0.11
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGACAG
Found at i:283668 original size:19 final size:19
Alignment explanation
Indices: 283652--283729 Score: 103
Period size: 19 Copynumber: 4.4 Consensus size: 19
283642 AAAATCGCAA
283652 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
283671 TGCGATTTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
283685 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
**
283704 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
283723 TGCGATT
1 TGCGATT
283730 CTCTCGTTGC
Statistics
Matches: 52, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
14 12 0.23
15 1 0.02
16 1 0.02
17 1 0.02
18 1 0.02
19 36 0.69
ACGTcount: A:0.08, C:0.17, G:0.28, T:0.47
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:283713 original size:14 final size:14
Alignment explanation
Indices: 283668--283694 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
283658 TTTGGTTTCG
283668 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
283682 CGTTGCGATTTTG
1 CGTTGCGATTTTG
283695 GTTTCGCGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.15, G:0.30, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:283737 original size:52 final size:53
Alignment explanation
Indices: 283652--283761 Score: 159
Period size: 52 Copynumber: 2.1 Consensus size: 53
283642 AAAATCGCAA
** * * *
283652 TGCGATTTTGGTTTCGCGTTGCGATTTTGTCGTTGCGATTTT-GGTTTCGCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCGATTTTAAGTTTCGCGT
*
283704 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCGATTTTAAGTTTCGTGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCGATTTTAAGTTTCGCGT
283757 TGCGA
1 TGCGA
283762 AAGTAAACTA
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
52 38 0.75
53 13 0.25
ACGTcount: A:0.09, C:0.17, G:0.27, T:0.46
Consensus pattern (53 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCGATTTTAAGTTTCGCGT
Found at i:284066 original size:91 final size:92
Alignment explanation
Indices: 283859--284172 Score: 585
Period size: 93 Copynumber: 3.4 Consensus size: 92
283849 TCAGGGTATT
*
283859 AGTTTAGCATAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
1 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGAC-AA
283924 TACTATTTCACAGTGTTAAAGAATACAC
65 TACTATTTCACAGTGTTAAAGAATACAC
283952 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGAC-AT
1 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAT
284016 ACTATTTCACAGTGTTAAAGAATACAC
66 ACTATTTCACAGTGTTAAAGAATACAC
284043 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
1 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGAC-AA
284108 TACTATTTCACAGTGTTAAAGAATACAC
65 TACTATTTCACAGTGTTAAAGAATACAC
*
284136 AGTTTAGCAGAATTGGCAGCAACCGAATAAATTTACT
1 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACT
284173 AAGCAATCTA
Statistics
Matches: 217, Mismatches: 2, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
91 91 0.42
93 126 0.58
ACGTcount: A:0.45, C:0.19, G:0.13, T:0.23
Consensus pattern (92 bp):
AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAT
ACTATTTCACAGTGTTAAAGAATACAC
Found at i:285890 original size:20 final size:20
Alignment explanation
Indices: 285857--285920 Score: 76
Period size: 20 Copynumber: 3.1 Consensus size: 20
285847 TTTTGGTTGA
285857 AATGAAAATCGCAACGAGAG
1 AATGAAAATCGCAACGAGAG
** *
285877 AAT-AACTGTCGCAACAAGAG
1 AATGAA-AATCGCAACGAGAG
285897 AAATGAAAATCGCAACGAGAG
1 -AATGAAAATCGCAACGAGAG
285918 AAT
1 AAT
285921 CGCAACGCGA
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
19 2 0.06
20 17 0.49
21 14 0.40
22 2 0.06
ACGTcount: A:0.50, C:0.16, G:0.22, T:0.12
Consensus pattern (20 bp):
AATGAAAATCGCAACGAGAG
Found at i:285911 original size:21 final size:21
Alignment explanation
Indices: 285855--285919 Score: 80
Period size: 21 Copynumber: 3.1 Consensus size: 21
285845 TCTTTTGGTT
285855 GAAATGAAAATCGCAACGAGA
1 GAAATGAAAATCGCAACGAGA
** *
285876 G-AAT-AACTGTCGCAACAAGA
1 GAAATGAA-AATCGCAACGAGA
285896 GAAATGAAAATCGCAACGAGA
1 GAAATGAAAATCGCAACGAGA
285917 GAA
1 GAA
285920 TCGCAACGCG
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
19 2 0.06
20 14 0.40
21 17 0.49
22 2 0.06
ACGTcount: A:0.51, C:0.15, G:0.23, T:0.11
Consensus pattern (21 bp):
GAAATGAAAATCGCAACGAGA
Found at i:285923 original size:14 final size:14
Alignment explanation
Indices: 285904--285960 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
285894 GAGAAATGAA
285904 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
285918 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
*
285937 AATCGCAACAAGAG
1 AATCGCAACGAGAG
285951 AATCGCAACG
1 AATCGCAACG
285961 CGAAATGAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
14 19 0.56
15 1 0.03
16 2 0.06
17 1 0.03
18 1 0.03
19 10 0.29
ACGTcount: A:0.46, C:0.23, G:0.23, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:285935 original size:33 final size:33
Alignment explanation
Indices: 285855--285977 Score: 156
Period size: 33 Copynumber: 3.5 Consensus size: 33
285845 TCTTTTGGTT
*
285855 GAAATGAAAATCGCAACGAGAGAATAACTGTCGCAACAAGA
1 GAAATGAAAATCGCAACGAGAG---AA---TCGCAAC--GC
285896 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
*
285929 GAAATGAAAATCGCAACAAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
285962 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
285978 TGCGATTTTG
Statistics
Matches: 80, Mismatches: 2, Indels: 8
0.89 0.02 0.09
Matches are distributed among these distances:
33 49 0.61
35 7 0.09
38 2 0.03
41 22 0.28
ACGTcount: A:0.49, C:0.19, G:0.22, T:0.11
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Done.