Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007847.1 Hibiscus syriacus cultivar Beakdansim tig00110204_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1444154
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 6
Found at i:773574 original size:60 final size:58
Alignment explanation
Indices: 773484--773611 Score: 150
Period size: 60 Copynumber: 2.2 Consensus size: 58
773474 GTCAGATGAT
* * * * *
773484 CATTTTGTAACTTTTAATAGTCGAGTGACTCAACAAAGCAATGTCTTGTAGTCGATGGAC
1 CATTTTATAACTTTTAATAGTCGAGAGACTCAACAAAG-AATATCCTATAGTCG-TGGAC
* *
773544 CATTTTATAACTTTTAATAGTC-AGGAGACTCAATAAAGAGTATCCTATAGTCGTGGAC
1 CATTTTATAACTTTTAATAGTCGA-GAGACTCAACAAAGAATATCCTATAGTCGTGGAC
773602 CATTTATATA
1 CATTT-TATA
773612 TTGTGCCCAA
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
58 10 0.17
59 16 0.27
60 33 0.56
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (58 bp):
CATTTTATAACTTTTAATAGTCGAGAGACTCAACAAAGAATATCCTATAGTCGTGGAC
Found at i:775538 original size:10 final size:10
Alignment explanation
Indices: 775518--775575 Score: 71
Period size: 10 Copynumber: 5.6 Consensus size: 10
775508 ATAGATTTTT
*
775518 TATTAAATTA
1 TATTAACTTA
*
775528 TATTAGCTTA
1 TATTAACTTA
775538 TTATTAACTTA
1 -TATTAACTTA
775549 TATTAACTTA
1 TATTAACTTA
*
775559 TTATTAAATTA
1 -TATTAACTTA
775570 TATTAA
1 TATTAA
775576 TGCAATTATT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
10 24 0.57
11 18 0.43
ACGTcount: A:0.41, C:0.05, G:0.02, T:0.52
Consensus pattern (10 bp):
TATTAACTTA
Found at i:775586 original size:22 final size:22
Alignment explanation
Indices: 775517--775609 Score: 113
Period size: 21 Copynumber: 4.3 Consensus size: 22
775507 TATAGATTTT
*
775517 TTATTAAATTATATT-AGCTTA
1 TTATTAAATTATATTAAGCTAA
* *
775538 TTATTAACTTATATTAA-CTTA
1 TTATTAAATTATATTAAGCTAA
775559 TTATTAAATTATATTAATGC-AA
1 TTATTAAATTATATTAA-GCTAA
775581 TTATTAAATTATATTAATGC-AA
1 TTATTAAATTATATTAA-GCTAA
775603 TTATTAA
1 TTATTAA
775610 TTGTGCTTGT
Statistics
Matches: 66, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
21 34 0.52
22 31 0.47
23 1 0.02
ACGTcount: A:0.42, C:0.05, G:0.03, T:0.49
Consensus pattern (22 bp):
TTATTAAATTATATTAAGCTAA
Found at i:775597 original size:10 final size:10
Alignment explanation
Indices: 775518--775597 Score: 63
Period size: 10 Copynumber: 7.6 Consensus size: 10
775508 ATAGATTTTT
775518 TATTAAATTA
1 TATTAAATTA
**
775528 TATTAGCTTA
1 TATTAAATTA
*
775538 TTATTAACTTA
1 -TATTAAATTA
*
775549 TATTAACTTA
1 TATTAAATTA
775559 TTATTAAATTA
1 -TATTAAATTA
*
775570 TATT-AATGCAA
1 TATTAAAT--TA
775581 TTATTAAATTA
1 -TATTAAATTA
775592 TATTAA
1 TATTAA
775598 TGCAATTATT
Statistics
Matches: 58, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
9 3 0.05
10 28 0.48
11 20 0.34
12 4 0.07
13 3 0.05
ACGTcount: A:0.42, C:0.05, G:0.03, T:0.50
Consensus pattern (10 bp):
TATTAAATTA
Found at i:786966 original size:30 final size:30
Alignment explanation
Indices: 786932--787004 Score: 119
Period size: 30 Copynumber: 2.4 Consensus size: 30
786922 CCCGAATGAC
*
786932 CTATCTAGAGGTCATAAAGATCCTCGGTAA
1 CTATCCAGAGGTCATAAAGATCCTCGGTAA
786962 CTATCCAGAGGTCATAAAGATCCTCGGTAA
1 CTATCCAGAGGTCATAAAGATCCTCGGTAA
* *
786992 CTGTCCATAGGTC
1 CTATCCAGAGGTC
787005 CCGAAGAACC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (30 bp):
CTATCCAGAGGTCATAAAGATCCTCGGTAA
Found at i:787106 original size:63 final size:61
Alignment explanation
Indices: 786987--787115 Score: 179
Period size: 63 Copynumber: 2.1 Consensus size: 61
786977 AAAGATCCTC
* * *
786987 GGTAACTGTCCATAGGTCCCGAAGAACCTAGGTAAACTGTCCATATGTTCCTTAGAACATA
1 GGTAACTGTCCATAGGTCCCGAAGAACATAGGTAAACTATCCATATGTTCCGTAGAACATA
* *
787048 GGTATACTGTCCATATGTCTCGAA-AGACATAGGTAAAACTATCCATATGTTCCGTAGAACATA
1 GGTA-ACTGTCCATAGGTCCCGAAGA-ACATAGGT-AAACTATCCATATGTTCCGTAGAACATA
787111 GGTAA
1 GGTAA
787116 ACCCTCGACT
Statistics
Matches: 60, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
61 5 0.08
62 25 0.42
63 30 0.50
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.27
Consensus pattern (61 bp):
GGTAACTGTCCATAGGTCCCGAAGAACATAGGTAAACTATCCATATGTTCCGTAGAACATA
Found at i:787110 original size:32 final size:31
Alignment explanation
Indices: 786990--787117 Score: 143
Period size: 31 Copynumber: 4.1 Consensus size: 31
786980 GATCCTCGGT
* * * *
786990 AACTGTCCATAGGTCCCGAAGAACCTAGGTA
1 AACTGTCCATATGTTCCGTAGAACATAGGTA
*
787021 AACTGTCCATATGTTCCTTAGAACATAGGTA
1 AACTGTCCATATGTTCCGTAGAACATAGGTA
* *
787052 TACTGTCCATATG-TCTCG-AAAGACATAGGTAA
1 AACTGTCCATATGTTC-CGTAGA-ACATAGGT-A
*
787084 AACTATCCATATGTTCCGTAGAACATAGGTA
1 AACTGTCCATATGTTCCGTAGAACATAGGTA
787115 AAC
1 AAC
787118 CCTCGACTCT
Statistics
Matches: 81, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
30 4 0.05
31 51 0.63
32 22 0.27
33 4 0.05
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (31 bp):
AACTGTCCATATGTTCCGTAGAACATAGGTA
Found at i:788520 original size:21 final size:21
Alignment explanation
Indices: 788494--788539 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
788484 ATTTTATTCG
*
788494 CTTGAAGGGGTATCGGTTCCC
1 CTTGAAGGGGTATCGATTCCC
* *
788515 CTTGAATGGGTGTCGATTCCC
1 CTTGAAGGGGTATCGATTCCC
788536 CTTG
1 CTTG
788540 CCCAGAAATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.13, C:0.24, G:0.30, T:0.33
Consensus pattern (21 bp):
CTTGAAGGGGTATCGATTCCC
Found at i:789866 original size:21 final size:21
Alignment explanation
Indices: 789841--789884 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
789831 AAAAATATTA
* * *
789841 AAAAATATTGATATTTTATAT
1 AAAAATAATAATATTTTAAAT
789862 AAAAATAATAATATTTTAAAT
1 AAAAATAATAATATTTTAAAT
789883 AA
1 AA
789885 TTTTTTATCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (21 bp):
AAAAATAATAATATTTTAAAT
Found at i:791965 original size:25 final size:25
Alignment explanation
Indices: 791936--792000 Score: 64
Period size: 23 Copynumber: 2.7 Consensus size: 25
791926 ACAAAGTACT
*
791936 AAACATATAATTATAAATTAGTTAA
1 AAACATATAATTATAAATTAATTAA
* *
791961 AAACATA-AA-TGTAATTTAATTAA
1 AAACATATAATTATAAATTAATTAA
*
791984 AATACA-ATATTTATAAA
1 AA-ACATATAATTATAAA
792001 ACATTAGTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
23 14 0.45
24 6 0.19
25 11 0.35
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (25 bp):
AAACATATAATTATAAATTAATTAA
Found at i:792914 original size:22 final size:22
Alignment explanation
Indices: 792886--792938 Score: 106
Period size: 22 Copynumber: 2.4 Consensus size: 22
792876 AAATTAATAG
792886 AATGTGTAAGTAATGAAGACTA
1 AATGTGTAAGTAATGAAGACTA
792908 AATGTGTAAGTAATGAAGACTA
1 AATGTGTAAGTAATGAAGACTA
792930 AATGTGTAA
1 AATGTGTAA
792939 TTAACTACCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.45, C:0.04, G:0.23, T:0.28
Consensus pattern (22 bp):
AATGTGTAAGTAATGAAGACTA
Found at i:796228 original size:17 final size:18
Alignment explanation
Indices: 796193--796229 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
796183 GGATTAATAA
796193 ATCTGAAAAGACATATTG
1 ATCTGAAAAGACATATTG
796211 ATCTGATAAA-AC-TATTG
1 ATCTGA-AAAGACATATTG
796228 AT
1 AT
796230 GTGCATAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.39
18 8 0.44
19 3 0.17
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.32
Consensus pattern (18 bp):
ATCTGAAAAGACATATTG
Found at i:797885 original size:24 final size:24
Alignment explanation
Indices: 797817--797913 Score: 70
Period size: 24 Copynumber: 4.0 Consensus size: 24
797807 ATTTTTGACT
* **
797817 TGAATTATGTTATGATA-CATGACC
1 TGAATTCTGTTATGATATC-TGATA
* * * *
797841 TGAATTCTATTCTAATTTCTGATA
1 TGAATTCTGTTATGATATCTGATA
* * *
797865 TGGATTCTGTTATGATATCTGTTC
1 TGAATTCTGTTATGATATCTGATA
* *
797889 TGAATTCTGTTTTGATTTCTGATA
1 TGAATTCTGTTATGATATCTGATA
797913 T
1 T
797914 CTCCGTTTAA
Statistics
Matches: 53, Mismatches: 19, Indels: 2
0.72 0.26 0.03
Matches are distributed among these distances:
24 52 0.98
25 1 0.02
ACGTcount: A:0.25, C:0.11, G:0.15, T:0.48
Consensus pattern (24 bp):
TGAATTCTGTTATGATATCTGATA
Found at i:799114 original size:2 final size:2
Alignment explanation
Indices: 799109--799143 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
799099 AAATTAAAAT
799109 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
799144 TGAAAAAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:820659 original size:3 final size:3
Alignment explanation
Indices: 820651--820676 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
820641 TGAGGCAATT
820651 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
820677 GCAAAGAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:820956 original size:24 final size:25
Alignment explanation
Indices: 820903--820961 Score: 77
Period size: 24 Copynumber: 2.4 Consensus size: 25
820893 ATAAATTGCA
820903 CCGAAGTG-CCGCGTAGAAATTTGTC
1 CCGAAG-GACCGCGTAGAAATTTGTC
820928 CCGAAGGACCGCGTAG-AATTTGTC
1 CCGAAGGACCGCGTAGAAATTTGTC
* *
820952 TCGAATGACC
1 CCGAAGGACC
820962 ACATATAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
24 17 0.55
25 14 0.45
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.22
Consensus pattern (25 bp):
CCGAAGGACCGCGTAGAAATTTGTC
Found at i:821197 original size:30 final size:31
Alignment explanation
Indices: 821148--821218 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 31
821138 ACATAATTTA
* *
821148 TATCGCATAGACATATCA-TTTACATACCTT
1 TATCACATAAACATATCATTTTACATACCTT
* *
821178 TATCACATAAACATTTCATTTTTCATACCTT
1 TATCACATAAACATATCATTTTACATACCTT
*
821209 TATCATATAA
1 TATCACATAA
821219 TTCATATAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
30 15 0.43
31 20 0.57
ACGTcount: A:0.35, C:0.21, G:0.03, T:0.41
Consensus pattern (31 bp):
TATCACATAAACATATCATTTTACATACCTT
Found at i:825842 original size:12 final size:12
Alignment explanation
Indices: 825825--825851 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
825815 AATTTGGAAT
825825 TCTACCTCTCTA
1 TCTACCTCTCTA
825837 TCTACCTCTCTA
1 TCTACCTCTCTA
825849 TCT
1 TCT
825852 GGAGGTAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.41, G:0.00, T:0.44
Consensus pattern (12 bp):
TCTACCTCTCTA
Found at i:828293 original size:25 final size:25
Alignment explanation
Indices: 828241--828293 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 25
828231 CTTGTATAAA
**
828241 TTGCACCAAAGTGCCGCGTAGAGTT
1 TTGCACCAAAGTGCCGCGTAGAAAT
828266 TTGCACCGAAA-TGCCGCGTAGAAAT
1 TTGCACC-AAAGTGCCGCGTAGAAAT
828291 TTG
1 TTG
828294 TCCCGAAGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 22 0.88
26 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (25 bp):
TTGCACCAAAGTGCCGCGTAGAAAT
Found at i:828299 original size:25 final size:25
Alignment explanation
Indices: 828252--828324 Score: 71
Period size: 25 Copynumber: 3.0 Consensus size: 25
828242 TGCACCAAAG
**
828252 TGCCGCGTAGAGTTTTG-CACCGAAA
1 TGCCGCGTAGAAATTTGTC-CCGAAA
828277 TGCCGCGTAGAAATTTGTCCCG-AA
1 TGCCGCGTAGAAATTTGTCCCGAAA
* *
828301 GGACCACGTAG-AATTTGTCCCGAA
1 TG-CCGCGTAGAAATTTGTCCCGAA
828325 GAACCACATA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
24 14 0.34
25 26 0.63
26 1 0.02
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (25 bp):
TGCCGCGTAGAAATTTGTCCCGAAA
Found at i:828320 original size:24 final size:25
Alignment explanation
Indices: 828282--828331 Score: 84
Period size: 24 Copynumber: 2.0 Consensus size: 25
828272 CGAAATGCCG
*
828282 CGTAGAAATTTGTCCCGAAGGACCA
1 CGTAGAAATTTGTCCCGAAGAACCA
828307 CGTAG-AATTTGTCCCGAAGAACCA
1 CGTAGAAATTTGTCCCGAAGAACCA
828331 C
1 C
828332 ATATAAACTC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 19 0.79
25 5 0.21
ACGTcount: A:0.32, C:0.26, G:0.22, T:0.20
Consensus pattern (25 bp):
CGTAGAAATTTGTCCCGAAGAACCA
Found at i:828572 original size:30 final size:31
Alignment explanation
Indices: 828523--828593 Score: 108
Period size: 31 Copynumber: 2.3 Consensus size: 31
828513 ACATAATTTA
* *
828523 TATCGCATAGACATATCA-TTTCCATACCTT
1 TATCACATAAACATATCATTTTCCATACCTT
*
828553 TATCACATAAACATTTCATTTTCCATACCTT
1 TATCACATAAACATATCATTTTCCATACCTT
828584 TATCACATAA
1 TATCACATAA
828594 TTCATATAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
30 15 0.41
31 22 0.59
ACGTcount: A:0.34, C:0.25, G:0.03, T:0.38
Consensus pattern (31 bp):
TATCACATAAACATATCATTTTCCATACCTT
Found at i:833973 original size:33 final size:31
Alignment explanation
Indices: 833936--834010 Score: 98
Period size: 33 Copynumber: 2.4 Consensus size: 31
833926 TATAAATTTA
*
833936 AAAAACGTTTTCAAACTATATGT-TATAGTTTTC
1 AAAAACGTTTTAAAACTATAT-TATAT-G-TTTC
833969 AAAAACGTTTTAAAACTATATTATATGTTTC
1 AAAAACGTTTTAAAACTATATTATATGTTTC
*
834000 AAAAATGTTTT
1 AAAAACGTTTT
834011 TTTAACTATA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
31 14 0.36
32 2 0.05
33 23 0.59
ACGTcount: A:0.40, C:0.09, G:0.08, T:0.43
Consensus pattern (31 bp):
AAAAACGTTTTAAAACTATATTATATGTTTC
Found at i:834000 original size:31 final size:33
Alignment explanation
Indices: 833936--834010 Score: 102
Period size: 31 Copynumber: 2.3 Consensus size: 33
833926 TATAAATTTA
*
833936 AAAAACGTTTTCAAACTATATGTTATAGTTTTC
1 AAAAACGTTTTAAAACTATATGTTATAGTTTTC
833969 AAAAACGTTTTAAAACTATA--TTATA-TGTTTC
1 AAAAACGTTTTAAAACTATATGTTATAGT-TTTC
*
834000 AAAAATGTTTT
1 AAAAACGTTTT
834011 TTTAACTATA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
30 1 0.03
31 19 0.49
33 19 0.49
ACGTcount: A:0.40, C:0.09, G:0.08, T:0.43
Consensus pattern (33 bp):
AAAAACGTTTTAAAACTATATGTTATAGTTTTC
Found at i:834062 original size:35 final size:37
Alignment explanation
Indices: 834014--834178 Score: 120
Period size: 38 Copynumber: 4.4 Consensus size: 37
834004 ATGTTTTTTT
834014 AACTATATATTATATAAATTTT-AAAACGATTTT-AA
1 AACTATATATTATATAAATTTTCAAAACGATTTTAAA
* * * *
834049 AATTATATATTATATAAGTTTTCAAAATGGTTTTAAA
1 AACTATATATTATATAAATTTTCAAAACGATTTTAAA
* *** * *
834086 AACTATATAATATATATGGTTTCAAAAAAC-AATTCAAA
1 AACTATATATTATATAAATTTTC--AAAACGATTTTAAA
* * ** **
834124 AATTATATAATATATATGTTTTCAAAAAATATTTTCAAA
1 AACTATATATTATATAAATTTTC-AAAACGATTTT-AAA
*
834163 AACCATATATTATATA
1 AACTATATATTATATA
834179 TTTTTAAGAT
Statistics
Matches: 104, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
35 20 0.19
36 9 0.09
37 26 0.25
38 29 0.28
39 20 0.19
ACGTcount: A:0.48, C:0.07, G:0.04, T:0.41
Consensus pattern (37 bp):
AACTATATATTATATAAATTTTCAAAACGATTTTAAA
Found at i:834093 original size:37 final size:36
Alignment explanation
Indices: 833918--834112 Score: 140
Period size: 35 Copynumber: 5.6 Consensus size: 36
833908 TTTCAAAATC
* * ** *
833918 ATATATTATATAA-ATTTAAAAAACGTTTTCAAACT
1 ATATATTATATAAGTTTTCAAAATGGTTTTAAAACT
* **
833953 ATAT-GT-TAT-AGTTTTCAAAAACGTTTTAAAAC-
1 ATATATTATATAAGTTTTCAAAATGGTTTTAAAACT
* **
833985 -TATATTATAT--G-TTTCAAAAATGTTTTTTTAACT
1 ATATATTATATAAGTTTTC-AAAATGGTTTTAAAACT
* * * *
834018 ATATATTATATAAATTTT-AAAACGATTTTAAAATT
1 ATATATTATATAAGTTTTCAAAATGGTTTTAAAACT
834053 ATATATTATATAAGTTTTCAAAATGGTTTTAAAAACT
1 ATATATTATATAAGTTTTCAAAATGGTTTT-AAAACT
* * *
834090 ATATAATATATATGGTTTCAAAA
1 ATATATTATATAAGTTTTCAAAA
834113 AACAATTCAA
Statistics
Matches: 126, Mismatches: 23, Indels: 20
0.75 0.14 0.12
Matches are distributed among these distances:
31 7 0.06
32 14 0.11
33 24 0.19
34 11 0.09
35 33 0.26
36 9 0.07
37 28 0.22
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (36 bp):
ATATATTATATAAGTTTTCAAAATGGTTTTAAAACT
Found at i:834134 original size:38 final size:39
Alignment explanation
Indices: 834083--834179 Score: 133
Period size: 38 Copynumber: 2.5 Consensus size: 39
834073 AAATGGTTTT
834083 AAAAACTATATAATATATATGGTTTCAAAAAACA-ATTC
1 AAAAACTATATAATATATATGGTTTCAAAAAACATATTC
* * * *
834121 AAAAATTATATAATATATATGTTTTCAAAAAATATTTTC
1 AAAAACTATATAATATATATGGTTTCAAAAAACATATTC
* *
834160 AAAAACCATATATTATATAT
1 AAAAACTATATAATATATAT
834180 TTTTAAGATG
Statistics
Matches: 51, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
38 31 0.61
39 20 0.39
ACGTcount: A:0.52, C:0.08, G:0.03, T:0.37
Consensus pattern (39 bp):
AAAAACTATATAATATATATGGTTTCAAAAAACATATTC
Found at i:834253 original size:2 final size:2
Alignment explanation
Indices: 834242--834272 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
834232 GATTTCAAAC
834242 TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
834273 ATAAAAAAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:835033 original size:165 final size:164
Alignment explanation
Indices: 834812--835755 Score: 916
Period size: 165 Copynumber: 5.7 Consensus size: 164
834802 TGACAAATAG
* * * * * * *
834812 CCCTTCTAGCCTTGAGTTATATTGTGAATGATGTGCCCTCCAAGCTGAGAGTAATTGAACTCGAG
1 CCCTTCTAGCCTTAAGTTATACTGTAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCGAG
* *
834877 GGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCTCAGAGCTGAGC
66 GGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCT-TGAGCTGAGC
834942 GTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAA
130 GTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAA
* ** * *
834977 CCCTTCTAGCCTTGAGTTATGTTGTAAATGATATGCCCTCGAAGCTGAGTGTAATTGAACTCGGG
1 CCCTTCTAGCCTTAAGTTATACTGTAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCGAG
* * *
835042 GGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCGTTGAACTGAGC
66 GGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC-TTGAGCTGAGC
* ** *
835107 GTAGTCGAACTCAAAGGTC-TTTGGTTGGCAGACAA
130 GTAGTCGAACTCGAAGGTCTTTTGG-TCACAGATAA
* * * * * * * *
835142 CCCTTCTAG-ATTCAAGTTGTGCTGCAAATGATATGCCTTTG-AGCTGAGCGTAGTCGAACTCGA
1 CCCTTCTAGCCTT-AAGTTATACTGTAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCGA
* * * * * * * *
835205 AGATCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAG
65 GGGTC-TTTGG---CAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG-CCTTG-AG
* * ** *
835270 CTGAGTGTAATCGAACTCGGGGGTC-TTTGG---CAGATAG
124 CTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAA
* * * * * * * * * * *
835307 CCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCGTTG-AGCTGAGCGTAGTCGAACTCAAA
1 CCCTTCTAGCCTTAAGTTATACTGTAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCGAG
* * * * *
835371 GGTCTTTTGTTGGCAGACAACCCTTGTAGACTTAAGTTGTGCTGCAAATGATGTGCCGTTGAGCT
66 GGTC---T-TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC-TTGAGCT
* *
835436 GAGCGTAGCCGAACTCAAAGGTCTTTTGGTCACAGATAA
126 GAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAA
* * * *
835475 CTCTTCTAGCCTTGAGTTATACTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGG
1 CCCTTCTAGCCTTAAGTTATACTGTAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCGAG
* *
835540 GGTCTTTGGTAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGC
66 GGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTT-GAGCTGAGC
* ** *
835605 GTAGTCGAACTCGAAGGTCTTTTGTTGGCAGACAA
130 GTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAA
* * * * * * *
835640 CCCTTCTAGACTTAAGTTGTGCTGAAAATGATATG-CCTTGGAGCTGAGTGTAGTCGAACTCGAA
1 CCCTTCTAGCCTTAAGTTATACTGTAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCG-A
* * * *
835704 GGTATTTGGTTGGCATATAACCCTTCTCGACTTAAGTTATGCTGCAAATGAT
65 GG-GTCT--TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGAT
835756 TTGTTTAAAA
Statistics
Matches: 647, Mismatches: 108, Indels: 45
0.81 0.14 0.06
Matches are distributed among these distances:
164 77 0.12
165 393 0.61
166 6 0.01
167 2 0.00
168 119 0.18
169 50 0.08
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (164 bp):
CCCTTCTAGCCTTAAGTTATACTGTAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCGAG
GGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGAGCTGAGCG
TAGTCGAACTCGAAGGTCTTTTGGTCACAGATAA
Found at i:835050 original size:84 final size:82
Alignment explanation
Indices: 834838--835755 Score: 845
Period size: 84 Copynumber: 11.1 Consensus size: 82
834828 TTATATTGTG
** * * * * *
834838 AATGATGTGCCCTCCAAGCTGAGAGTAATTGAACTCGAGGGTCTTTGG-CAGATAACCCTTCTCG
1 AATGATGTGCCCTTGAAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTCAGATAACCCTTCTAG
* *
834902 ACTTAAGCTATACTGCA
66 ACTTAAGTTATGCTGCA
*
834919 AATGATGTG-CC-TCAGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTT
1 AATGATGTGCCCTTGA-AGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGT--CAGATAACCCTT
* * * *
834982 CTAGCCTTGAGTTATGTTGTA
62 CTAGACTTAAGTTATGCTGCA
* * * * * ** * *
835003 AATGATATGCCCTCGAAGCTGAGTGTAATTGAACTCGGGGGTCTTTGG-CAGATAGCCCTTCTCG
1 AATGATGTGCCCTTGAAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTCAGATAACCCTTCTAG
* *
835067 ACTTAAGCTATACTGCA
66 ACTTAAGTTATGCTGCA
* * *
835084 AATGATGTGCCGTTGAA-CTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGACAACCCTTC
1 AATGATGTGCCCTTGAAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG-T--CAGATAACCCTTC
*
835148 TAGA-TTCAAGTTGTGCTGCA
63 TAGACTT-AAGTTATGCTGCA
* * *
835168 AATGATATGCCTTTG-AGCTGAGCGTAGTCGAACTCGAAGATCTTTTGGTCACAGATAACCCTTC
1 AATGATGTGCCCTTGAAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGT--CAGATAACCCTTC
* * *
835232 TAGCCTTGAGTTATGCTGTA
63 TAGACTTAAGTTATGCTGCA
* * * ** * *
835252 AATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGG-CAGATAGCCCTTCTCG
1 AATGATGTGCCCTTGAAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTCAGATAACCCTTCTAG
* *
835316 ACTTAAGCTATACTGCA
66 ACTTAAGTTATGCTGCA
* * * * *
835333 AATGATGTGCCGTTG-AGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGTTGGCAGACAACCCTTG
1 AATGATGTGCCCTTGAAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTG--GTCAGATAACCCTTC
*
835397 TAGACTTAAGTTGTGCTGCA
63 TAGACTTAAGTTATGCTGCA
* * * *
835417 AATGATGTGCCGTTG-AGCTGAGCGTAGCCGAACTCAAAGGTCTTTTGGTCACAGATAACTCTTC
1 AATGATGTGCCCTTGAAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGT--CAGATAACCCTTC
* * * *
835481 TAGCCTTGAGTTATACTGTA
63 TAGACTTAAGTTATGCTGCA
* * * ** * *
835501 AATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGT-AGATAGCCCTTCTCG
1 AATGATGTGCCCTTGAAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTCAGATAACCCTTCTAG
*
835565 ACTTAAGCTATGCTGCA
66 ACTTAAGTTATGCTGCA
* * *
835582 AATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGTTGGCAGACAACCCTTC
1 AATGATGTGCCCTTGAAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTG--GTCAGATAACCCTTC
* *
835646 TAGACTTAAGTTGTGCTGAA
63 TAGACTTAAGTTATGCTGCA
* * * * *
835666 AATGATATG-CCTTGGAGCTGAGTGTAGTCGAACTCGAAGGTATTTGGTTGGCATATAACCCTTC
1 AATGATGTGCCCTTGAAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG-T--CAGATAACCCTTC
*
835730 TCGACTTAAGTTATGCTGCA
63 TAGACTTAAGTTATGCTGCA
835750 AATGAT
1 AATGAT
835756 TTGTTTAAAA
Statistics
Matches: 676, Mismatches: 131, Indels: 57
0.78 0.15 0.07
Matches are distributed among these distances:
79 2 0.00
80 98 0.14
81 134 0.20
82 1 0.00
83 9 0.01
84 357 0.53
85 74 0.11
86 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (82 bp):
AATGATGTGCCCTTGAAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTCAGATAACCCTTCTAG
ACTTAAGTTATGCTGCA
Found at i:835320 original size:249 final size:249
Alignment explanation
Indices: 834882--835755 Score: 1385
Period size: 249 Copynumber: 3.5 Consensus size: 249
834872 TCGAGGGTCT
* * * * * * **
834882 TTGGCAGATAACCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCTCAGAGCTGAGCGTAGT
1 TTGGCAGACAACCCTTCTAGACTTAAGTTGTGCTGCAAATGATATGCCTTTGAGCTGAGCGTAGT
* *
834947 CGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGTTGTAAATGATATG
66 CGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTG
*
835012 CCCTCGAAGCTGAGTGTAATTGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTA
131 CCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTA
* *
835077 TACTGCAAATGATGTGCCGTTGAACTGAGCGTAGTCGAACTCAAAGGTCTTTGG
196 TACTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTG
835131 TTGGCAGACAACCCTTCTAGA-TTCAAGTTGTGCTGCAAATGATATGCCTTTGAGCTGAGCGTAG
1 TTGGCAGACAACCCTTCTAGACTT-AAGTTGTGCTGCAAATGATATGCCTTTGAGCTGAGCGTAG
*
835195 TCGAACTCGAAGATCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGT
65 TCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGT
835260 GCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCT
130 GCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCT
835325 ATACTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTG
195 ATACTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTG
* * * *
835380 TTGGCAGACAACCCTTGTAGACTTAAGTTGTGCTGCAAATGATGTGCCGTTGAGCTGAGCGTAGC
1 TTGGCAGACAACCCTTCTAGACTTAAGTTGTGCTGCAAATGATATGCCTTTGAGCTGAGCGTAGT
* * *
835445 CGAACTCAAAGGTCTTTTGGTCACAGATAACTCTTCTAGCCTTGAGTTATACTGTAAATGATGTG
66 CGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTG
*
835510 CCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGTAGATAGCCCTTCTCGACTTAAGCTA
131 CCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTA
* *
835575 TGCTGCAAATGATGTGCC-TTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTG
196 TACTGCAAATGATGTGCCGTT-GAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTG
* * *
835629 TTGGCAGACAACCCTTCTAGACTTAAGTTGTGCTGAAAATGATATGCCTTGGAGCTGAGTGTAGT
1 TTGGCAGACAACCCTTCTAGACTTAAGTTGTGCTGCAAATGATATGCCTTTGAGCTGAGCGTAGT
* ** * * * * *
835694 CGAACTCGAAGGT-ATTTGGTTGGCATATAACCCTTCTCGACTTAAGTTATGCTGCAAATGAT
66 CGAACTCGAAGGTCTTTTGG-TCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGAT
835756 TTGTTTAAAA
Statistics
Matches: 578, Mismatches: 43, Indels: 8
0.92 0.07 0.01
Matches are distributed among these distances:
248 9 0.02
249 567 0.98
250 2 0.00
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (249 bp):
TTGGCAGACAACCCTTCTAGACTTAAGTTGTGCTGCAAATGATATGCCTTTGAGCTGAGCGTAGT
CGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTG
CCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTA
TACTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTG
Found at i:839645 original size:16 final size:16
Alignment explanation
Indices: 839624--839667 Score: 88
Period size: 16 Copynumber: 2.8 Consensus size: 16
839614 ACAAAAAATC
839624 CTACCCCACATGATAT
1 CTACCCCACATGATAT
839640 CTACCCCACATGATAT
1 CTACCCCACATGATAT
839656 CTACCCCACATG
1 CTACCCCACATG
839668 CTTTACTTCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.30, C:0.41, G:0.07, T:0.23
Consensus pattern (16 bp):
CTACCCCACATGATAT
Found at i:842415 original size:35 final size:37
Alignment explanation
Indices: 842276--842537 Score: 122
Period size: 33 Copynumber: 7.3 Consensus size: 37
842266 TTTCAAAATC
** *
842276 ATATATTATATAAATTTAAAAAACG-TTTT-CAAACT
1 ATATATTATATAAATTTTCAAAACGATTTTAAAAACT
* *
842311 ATAT-GT-TAT-AGTTTTCAAAAACG-TTTT-AAAACT
1 ATATATTATATAAATTTTC-AAAACGATTTTAAAAACT
* * ***
842344 ATAT-TTATAT---GTTTCAAAAATG-TTTTTTTAACT
1 ATATATTATATAAATTTTC-AAAACGATTTTAAAAACT
*
842377 ATATATTATATAAATTTT-AAAACGATTTT-AAAATT
1 ATATATTATATAAATTTTCAAAACGATTTTAAAAACT
* * *
842412 ATATATTATATAAGTTTTCAAAATGGTTTTAAAAACT
1 ATATATTATATAAATTTTCAAAACGATTTTAAAAACT
* *** * * *
842449 ATATAATATATATGGTTTCAAAAAAC-AATTCAAAAATT
1 ATATATTATATAAATTTTC--AAAACGATTTTAAAAACT
* ** ** *
842487 ATATAATATATATGTTTTCAAAAAATATTTTCAAAAACC
1 ATATATTATATAAATTTTC-AAAACGATTTT-AAAAACT
842526 ATATATTATATA
1 ATATATTATATA
842538 TTTTTAAGAT
Statistics
Matches: 179, Mismatches: 34, Indels: 24
0.76 0.14 0.10
Matches are distributed among these distances:
32 18 0.10
33 31 0.17
34 10 0.06
35 29 0.16
36 13 0.07
37 29 0.16
38 29 0.16
39 20 0.11
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.43
Consensus pattern (37 bp):
ATATATTATATAAATTTTCAAAACGATTTTAAAAACT
Found at i:842452 original size:37 final size:36
Alignment explanation
Indices: 842276--842471 Score: 149
Period size: 33 Copynumber: 5.6 Consensus size: 36
842266 TTTCAAAATC
* * ** *
842276 ATATATTATATAA-ATTTAAAAAACGTTTTCAAACT
1 ATATATTATATAAGTTTTCAAAATGGTTTTAAAACT
* **
842311 ATAT-GT-TAT-AGTTTTCAAAAACGTTTTAAAACT
1 ATATATTATATAAGTTTTCAAAATGGTTTTAAAACT
* **
842344 ATAT-TTATAT--G-TTTCAAAAATGTTTTTTTAACT
1 ATATATTATATAAGTTTTC-AAAATGGTTTTAAAACT
* * * *
842377 ATATATTATATAAATTTT-AAAACGATTTTAAAATT
1 ATATATTATATAAGTTTTCAAAATGGTTTTAAAACT
842412 ATATATTATATAAGTTTTCAAAATGGTTTTAAAAACT
1 ATATATTATATAAGTTTTCAAAATGGTTTT-AAAACT
* * *
842449 ATATAATATATATGGTTTCAAAA
1 ATATATTATATAAGTTTTCAAAA
842472 AACAATTCAA
Statistics
Matches: 129, Mismatches: 23, Indels: 16
0.77 0.14 0.10
Matches are distributed among these distances:
32 5 0.04
33 44 0.34
34 10 0.08
35 33 0.26
36 9 0.07
37 28 0.22
ACGTcount: A:0.43, C:0.06, G:0.06, T:0.44
Consensus pattern (36 bp):
ATATATTATATAAGTTTTCAAAATGGTTTTAAAACT
Found at i:842493 original size:38 final size:39
Alignment explanation
Indices: 842442--842538 Score: 133
Period size: 38 Copynumber: 2.5 Consensus size: 39
842432 AAATGGTTTT
842442 AAAAACTATATAATATATATGGTTTCAAAAAACA-ATTC
1 AAAAACTATATAATATATATGGTTTCAAAAAACATATTC
* * * *
842480 AAAAATTATATAATATATATGTTTTCAAAAAATATTTTC
1 AAAAACTATATAATATATATGGTTTCAAAAAACATATTC
* *
842519 AAAAACCATATATTATATAT
1 AAAAACTATATAATATATAT
842539 TTTTAAGATG
Statistics
Matches: 51, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
38 31 0.61
39 20 0.39
ACGTcount: A:0.52, C:0.08, G:0.03, T:0.37
Consensus pattern (39 bp):
AAAAACTATATAATATATATGGTTTCAAAAAACATATTC
Found at i:842612 original size:2 final size:2
Alignment explanation
Indices: 842601--842629 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
842591 GATTTCAAAC
842601 TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
842630 ATAAAAAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:842776 original size:18 final size:17
Alignment explanation
Indices: 842722--842770 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 17
842712 TTGGATCCTT
* *
842722 AGTGCATCGGTGCACTAA
1 AGTGCATCGATGCA-TCA
842740 GAGTGCATCGATGCATCA
1 -AGTGCATCGATGCATCA
842758 AGTGCATTCGATG
1 AGTGCA-TCGATG
842771 TTTCAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 6 0.22
18 8 0.30
19 13 0.48
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (17 bp):
AGTGCATCGATGCATCA
Found at i:842875 original size:65 final size:64
Alignment explanation
Indices: 842716--842901 Score: 216
Period size: 65 Copynumber: 2.9 Consensus size: 64
842706 TGACCGTTGG
* * *
842716 ATCCTTAGTGCATCGGTGCACTAAG-AGTGCATCGATGCATCAAGTGCATTCGATG-TTTCAAAA
1 ATCCTCAGTGCATCGGTGCA-T-GGTAGTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAA
842779 T
64 T
* ** * * *
842780 AGCCAGAGTGCATCGATGCATGGCTGGTGCATCTATGCATCAAATGCATTCGATGTTTTCATAAA
1 ATCCTCAGTGCATCGGTGCATGG-TAGTGCATCGATGCATCAAATGCATTCGATGTTTTCA-AAA
842845 -
64 T
*
842845 ATCCTCAGTGCATCGGTGCATGGTATGTGCATCGATGCATGAAATGCATTCGATGTT
1 ATCCTCAGTGCATCGGTGCATGGTA-GTGCATCGATGCATCAAATGCATTCGATGTT
842902 CAATTTAATT
Statistics
Matches: 102, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
62 1 0.01
63 1 0.01
64 44 0.43
65 53 0.52
66 3 0.03
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (64 bp):
ATCCTCAGTGCATCGGTGCATGGTAGTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAAT
Found at i:842940 original size:65 final size:64
Alignment explanation
Indices: 842742--842951 Score: 223
Period size: 65 Copynumber: 3.2 Consensus size: 64
842732 TGCACTAAGA
* * ** *
842742 GTGCATCGATGCATCAAGTGCATTCGATGTTTCAAAAT-AGCCAGAGTGCATCGATGCATGGCTG
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCAATATAATTCAG-GTGCATCGATGCATGGTTG
* * *
842806 GTGCATCTATGCATCAAATGCATTCGATGTTTTC-ATAAAATCCTCA-GTGCATCGGTGCATGGT
1 GTGCATCGATGCATCAAATGCATTCGATG-TTTCAATATAAT--TCAGGTGCATCGATGCATGGT
842869 AT-
63 -TG
* *
842871 GTGCATCGATGCATGAAATGCATTCGATG-TTCAATTTAATTCATGGTGCATCGATGCATGGATT
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCAATATAATTCA-GGTGCATCGATGCATGG-TT
842935 G
64 G
*
842936 GTGCATCGGTGCATCA
1 GTGCATCGATGCATCA
842952 CTTTGAAAAT
Statistics
Matches: 121, Mismatches: 15, Indels: 19
0.78 0.10 0.12
Matches are distributed among these distances:
62 3 0.02
63 3 0.02
64 50 0.41
65 62 0.51
66 1 0.01
67 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (64 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTCAATATAATTCAGGTGCATCGATGCATGGTTG
Found at i:849687 original size:18 final size:17
Alignment explanation
Indices: 849633--849681 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 17
849623 TTAGATCCTT
* *
849633 AGTGCATCGGTGCACTAA
1 AGTGCATCGATGCA-TCA
849651 GAGTGCATCGATGCATCA
1 -AGTGCATCGATGCATCA
849669 AGTGCATTCGATG
1 AGTGCA-TCGATG
849682 TTTCAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 6 0.22
18 8 0.30
19 13 0.48
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (17 bp):
AGTGCATCGATGCATCA
Found at i:860170 original size:12 final size:11
Alignment explanation
Indices: 860146--860258 Score: 57
Period size: 12 Copynumber: 9.4 Consensus size: 11
860136 TTCAAAGAGG
860146 TTTTAT-TTAA
1 TTTTATATTAA
860156 TTTTATATTATA
1 TTTTATATTA-A
* *
860168 TTTGATTTTAA
1 TTTTATATTAA
860179 TTTTAATATTAA
1 TTTT-ATATTAA
* *
860191 TTTTTTAAATAAA
1 --TTTTATATTAA
**
860204 TTAAATATTAATA
1 TTTTATATT-A-A
860217 TTTTAATATTATA
1 TTTT-ATATTA-A
*
860230 TTATAGATATTAA
1 TT-T-TATATTAA
860243 TTTTAATATTAA
1 TTTT-ATATTAA
860255 TTTT
1 TTTT
860259 TTAAATAAAT
Statistics
Matches: 78, Mismatches: 14, Indels: 20
0.70 0.12 0.18
Matches are distributed among these distances:
10 6 0.08
11 12 0.15
12 28 0.36
13 16 0.21
14 16 0.21
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (11 bp):
TTTTATATTAA
Found at i:860232 original size:26 final size:27
Alignment explanation
Indices: 860177--860254 Score: 85
Period size: 26 Copynumber: 3.0 Consensus size: 27
860167 ATTTGATTTT
* *
860177 AATTTTAATATTAATTTTTTAA-A-TA
1 AATTATAATATTAATATTTTAATATTA
860202 AATTA-AATATTAATATTTTAATATTA
1 AATTATAATATTAATATTTTAATATTA
*
860228 TATTATAGATATT-A-ATTTTAATATTA
1 AATTATA-ATATTAATATTTTAATATTA
860254 A
1 A
860255 TTTTTTAAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
24 15 0.33
25 5 0.11
26 18 0.40
27 2 0.04
28 5 0.11
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (27 bp):
AATTATAATATTAATATTTTAATATTA
Found at i:860254 original size:64 final size:64
Alignment explanation
Indices: 860155--860312 Score: 268
Period size: 64 Copynumber: 2.5 Consensus size: 64
860145 GTTTTATTTA
*
860155 ATTTT-ATATTATATT-T-GATTTTAATTTTAATATTAATTTTTTAAATAAATTAAATATTAAT
1 ATTTTAATATTATATTATAGATATTAATTTTAATATTAATTTTTTAAATAAATTAAATATTAAT
860216 ATTTTAATATTATATTATAGATATTAATTTTAATATTAATTTTTTAAATAAATTAAATATTAAT
1 ATTTTAATATTATATTATAGATATTAATTTTAATATTAATTTTTTAAATAAATTAAATATTAAT
*
860280 TTTTTAATATTATATTATAGATATTTAATTTTA
1 ATTTTAATATTATATTATAGATA-TTAATTTTA
860313 TATCATATAA
Statistics
Matches: 91, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
61 5 0.05
62 10 0.11
63 1 0.01
64 66 0.73
65 9 0.10
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (64 bp):
ATTTTAATATTATATTATAGATATTAATTTTAATATTAATTTTTTAAATAAATTAAATATTAAT
Found at i:860262 original size:40 final size:37
Alignment explanation
Indices: 860207--860295 Score: 101
Period size: 38 Copynumber: 2.3 Consensus size: 37
860197 AAATAAATTA
*
860207 AATATTAATATTTTAATATTATATTATAGATATTAA-TTTT
1 AATATTAATATTTTAA-A-TAAATTA-A-ATATTAATTTTT
*
860247 AATATTAATTTTTTAAATAAATTAAATATTAATTTTTT
1 AATATTAATATTTTAAATAAATTAAATATTAA-TTTTT
860285 AATATT-ATATT
1 AATATTAATATT
860296 ATAGATATTT
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
36 7 0.16
37 5 0.11
38 16 0.36
39 1 0.02
40 15 0.34
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (37 bp):
AATATTAATATTTTAAATAAATTAAATATTAATTTTT
Found at i:860367 original size:20 final size:19
Alignment explanation
Indices: 860307--860368 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
860297 TAGATATTTA
*
860307 ATTTTATATCA-TATAAATT
1 ATTTTATAT-ATTATTAATT
*
860326 ATTTTATATATTATTAA-A
1 ATTTTATATATTATTAATT
860344 ATTTTATAT-TTATTTTAATT
1 ATTTTATATATTA--TTAATT
860364 ATTTT
1 ATTTT
860369 GATTTAAGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
17 3 0.08
18 10 0.28
19 18 0.50
20 5 0.14
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (19 bp):
ATTTTATATATTATTAATT
Found at i:860630 original size:21 final size:20
Alignment explanation
Indices: 860606--860653 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 20
860596 AATATTTTCT
860606 AAAAATATC-ATATAATTATAA
1 AAAAATATCAATAT-ATT-TAA
*
860627 AAAAATTATGAATATATTTAA
1 AAAAA-TATCAATATATTTAA
860648 AAAAAT
1 AAAAAT
860654 TAAAAGTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 1 0.04
21 13 0.54
22 6 0.25
23 4 0.17
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (20 bp):
AAAAATATCAATATATTTAA
Found at i:860885 original size:31 final size:31
Alignment explanation
Indices: 860826--860886 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
860816 GTAGTTGTAT
* * **
860826 AAATTATTTAAATTTTAGTATTGTAAAACTA
1 AAATTATTTAAATATCAGTATTACAAAACTA
860857 AAATTATTTAAATATCAGTATTACAAAACT
1 AAATTATTTAAATATCAGTATTACAAAACT
860887 CTTTTAAGTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.48, C:0.07, G:0.05, T:0.41
Consensus pattern (31 bp):
AAATTATTTAAATATCAGTATTACAAAACTA
Found at i:870906 original size:29 final size:29
Alignment explanation
Indices: 870864--870920 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
870854 TTTTTGTTTC
*
870864 CAGTGATCATCATCTTATTAATGAAAAAA
1 CAGTAATCATCATCTTATTAATGAAAAAA
870893 CAGTAATCATCATCTTATTAATGAAAAA
1 CAGTAATCATCATCTTATTAATGAAAAA
870921 TATTTAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.46, C:0.14, G:0.09, T:0.32
Consensus pattern (29 bp):
CAGTAATCATCATCTTATTAATGAAAAAA
Found at i:870961 original size:95 final size:95
Alignment explanation
Indices: 870798--870986 Score: 351
Period size: 95 Copynumber: 2.0 Consensus size: 95
870788 CATAATTATT
* * *
870798 CAGTAATCATCATCTTATTAATGAAAAGTATTTAAAATATGATGCCATAATTTAAATTTTTGTTT
1 CAGTAATCATCATCTTATTAATGAAAAATATTTAAAATATGACGCCATAATTTAAATTTTTGTCT
870863 CCAGTGATCATCATCTTATTAATGAAAAAA
66 CCAGTGATCATCATCTTATTAATGAAAAAA
870893 CAGTAATCATCATCTTATTAATGAAAAATATTTAAAATATGACGCCATAATTTAAATTTTTGTCT
1 CAGTAATCATCATCTTATTAATGAAAAATATTTAAAATATGACGCCATAATTTAAATTTTTGTCT
870958 CCAGTGATCATCATCTTATTAATGAAAAA
66 CCAGTGATCATCATCTTATTAATGAAAAA
870987 TATTTAAAAT
Statistics
Matches: 91, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
95 91 1.00
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (95 bp):
CAGTAATCATCATCTTATTAATGAAAAATATTTAAAATATGACGCCATAATTTAAATTTTTGTCT
CCAGTGATCATCATCTTATTAATGAAAAAA
Found at i:876392 original size:14 final size:15
Alignment explanation
Indices: 876371--876409 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
876361 TAACGCGGAT
876371 GAGTTGACTCAGA-C
1 GAGTTGACTCAGACC
*
876385 GGGTTGACTCAGACC
1 GAGTTGACTCAGACC
876400 GAGTTGACTC
1 GAGTTGACTC
876410 GGTGATTGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 12 0.55
15 10 0.45
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.23
Consensus pattern (15 bp):
GAGTTGACTCAGACC
Found at i:880437 original size:2 final size:2
Alignment explanation
Indices: 880425--880462 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
880415 ATAATTTTGT
880425 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
880463 TGATTTAATT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:882977 original size:7 final size:7
Alignment explanation
Indices: 882964--882997 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
882954 CTTTTATGTC
882964 GTTTGAG
1 GTTTGAG
*
882971 ATTTGAG
1 GTTTGAG
882978 GTTTGAG
1 GTTTGAG
882985 GTTTGAG
1 GTTTGAG
882992 GTTTGA
1 GTTTGA
882998 AGAGAACGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.18, C:0.00, G:0.38, T:0.44
Consensus pattern (7 bp):
GTTTGAG
Found at i:884141 original size:139 final size:138
Alignment explanation
Indices: 883940--884328 Score: 480
Period size: 139 Copynumber: 2.8 Consensus size: 138
883930 ATTAAACCTA
* * * * *
883940 AAAATGTAGGCTCTAATATTAA-CTTAAATCATTTTTAATGACTTAT-TGATTCGAATAGTTAAA
1 AAAATGGAGGCTCTAATATTAATCTT-AATTATTTTTAATCAATTATGTGATTCGAATAATTAAA
* * * *
884003 ATGGAACCTCGAGCAAAAGAGATGACCATATAAAAAATTCTCCTAAATTAAAGGAATTAGTTTGA
65 ATGGAACATCGAGCAAAAGAGAGGACCAAATAAAAAATTC-CCTAAATTAAAGGAATAAGTTTGA
884068 AATTAAGGC-T
129 AATTAA-GCTT
* * *
884078 AAAATGGAGGCTCTAATATTAATCCTAATTAATTTTAACCAATTATGTGATTCGAATAATTAAAA
1 AAAATGGAGGCTCTAATATTAATCTTAATTATTTTTAATCAATTATGTGATTCGAATAATTAAAA
* * * * * * * *
884143 TTGAACTTTGAG-AAAAAATGAGGACCAAATTAAAAATTCCCCTAATTTCAAGGACTAAGTTTGA
66 TGGAACATCGAGCAAAAGA-GAGGACCAAATAAAAAATT-CCCTAAATTAAAGGAATAAGTTTGA
884207 AATTAAGCTT
129 AATTAAGCTT
* *
884217 AAAATAGAGGCTCTAATATTAATCTTAATTATTTTTAATCAATTATGTGGTTCGAATAATTAAAA
1 AAAATGGAGGCTCTAATATTAATCTTAATTATTTTTAATCAATTATGTGATTCGAATAATTAAAA
* * *
884282 TGGAACATCAAGCAAAAGCGAGGACTAAATAAAAAATTCCCTAAATT
66 TGGAACATCGAGCAAAAGAGAGGACCAAATAAAAAATTCCCTAAATT
884329 TAGGCCTAAA
Statistics
Matches: 212, Mismatches: 33, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
138 51 0.24
139 156 0.74
140 5 0.02
ACGTcount: A:0.43, C:0.12, G:0.13, T:0.32
Consensus pattern (138 bp):
AAAATGGAGGCTCTAATATTAATCTTAATTATTTTTAATCAATTATGTGATTCGAATAATTAAAA
TGGAACATCGAGCAAAAGAGAGGACCAAATAAAAAATTCCCTAAATTAAAGGAATAAGTTTGAAA
TTAAGCTT
Found at i:884439 original size:119 final size:121
Alignment explanation
Indices: 884227--884459 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 121
884217 AAAATAGAGG
* * ***
884227 CTCTAATATTAATCTTAATTATTTTTAATCAATTATGTGGTTCGAATAATTAAAATGGAACATCA
1 CTCTAATATTAATCATAATTAATTTTAATCAATTATGCAATTCGAATAATTAAAATGGAACATCA
*** * * *
884292 AGCAAAAGCGAGGACTAAATAAAAAATTC-CCTAAATTT-AGGCCTAAAGTGAATA
66 AGCAAAAAAAAGGACCAAATAAAAAATTCACATAAATTTAAGGACTAAAGTGAATA
*
884346 CTCTAATATTAATCATAATTAATTTTAATCACTTATGCAATTCGAATAATTAAAATGGAACCA-C
1 CTCTAATATTAATCATAATTAATTTTAATCAATTATGCAATTCGAATAATTAAAATGGAA-CATC
* * *
884410 GAGCAAAAAAAAGGACCAAATTAAGAATTCACATAAATTTAAGGACTAAA
65 AAGCAAAAAAAAGGACCAAATAAAAAATTCACATAAATTTAAGGACTAAA
884460 TTTGAAATTA
Statistics
Matches: 96, Mismatches: 15, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
119 78 0.81
120 10 0.10
121 8 0.08
ACGTcount: A:0.45, C:0.13, G:0.11, T:0.30
Consensus pattern (121 bp):
CTCTAATATTAATCATAATTAATTTTAATCAATTATGCAATTCGAATAATTAAAATGGAACATCA
AGCAAAAAAAAGGACCAAATAAAAAATTCACATAAATTTAAGGACTAAAGTGAATA
Found at i:884504 original size:139 final size:137
Alignment explanation
Indices: 884333--884725 Score: 520
Period size: 139 Copynumber: 2.8 Consensus size: 137
884323 TAAATTTAGG
*
884333 CCTAAAGTGAAT-ACTCTAATATTAATCATAATTAATTTTAATCACTTATGCAATTCGAATAATT
1 CCTAAAGTG-ATGACTCTAATATTAATCATAATTAATTTTAATCAATTATGCAATTCGAATAATT
** *
884397 AAAATGGAACCACGAGCAAAAAAAAGGACCAAATTAAGAATTCACATAAATTTAAGGACTAAATT
65 AAAATGGAACC-CGAGCAAAAGCAATGACCAAATTAAGAATTCAC-TAAATTTAAGGACTAAATT
884462 TGAAATTAAA
128 TGAAATTAAA
* * * * *
884472 CTTAAAGTGATGACTCTAATATTAATCCTAATTAATTTTAATCAATTATACAATTCAAATAACTA
1 CCTAAAGTGATGACTCTAATATTAATCATAATTAATTTTAATCAATTATGCAATTCGAATAATTA
* * * * * *
884537 AAATGGAACTTCGGGCAAAAGCGATGACCAAGTTAATAATTCACCTAAATTTAAGGATTAAATTT
66 AAATGGAAC-CCGAGCAAAAGCAATGACCAAATTAAGAATTCA-CTAAATTTAAGGACTAAATTT
*
884602 GAAATTAGA
129 GAAATTAAA
* * * * *
884611 CCTAAAGTGAAGGCTCTAATATTAATCTTAATTAATTATAATCAATTATGTAATTCGAATAATTA
1 CCTAAAGTGATGACTCTAATATTAATCATAATTAATTTTAATCAATTATGCAATTCGAATAATTA
*
884676 AAATGGAACCTGAGC-AAAGCAATGACCAAATTAAGAATTCATCTAAATTT
66 AAATGGAACCCGAGCAAAAGCAATGACCAAATTAAGAATTCA-CTAAATTT
884726 GAAATTAGAC
Statistics
Matches: 219, Mismatches: 32, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
137 31 0.14
138 5 0.02
139 182 0.83
140 1 0.00
ACGTcount: A:0.45, C:0.13, G:0.11, T:0.31
Consensus pattern (137 bp):
CCTAAAGTGATGACTCTAATATTAATCATAATTAATTTTAATCAATTATGCAATTCGAATAATTA
AAATGGAACCCGAGCAAAAGCAATGACCAAATTAAGAATTCACTAAATTTAAGGACTAAATTTGA
AATTAAA
Found at i:884545 original size:258 final size:259
Alignment explanation
Indices: 884088--884589 Score: 652
Period size: 258 Copynumber: 1.9 Consensus size: 259
884078 AAAATGGAGG
* ** * ***
884088 CTCTAATATTAATCCTAATTAATTTTAACCAATTATGTGATTCGAATAATTAAAATTGAACTTTG
1 CTCTAATATTAATCATAATTAATTTTAACCAATTATGCAATTCGAATAATTAAAATGGAACCACG
* * * * *
884153 AGAAAAAATGAGGACCAAATTAAAAATTCCCCTAATTTCAAGGACTAAGTTTGAAATTAAGCTTA
66 AGAAAAAATAAGGACCAAATTAAAAATTCACATAATTTCAAGGACTAAATTTGAAATTAAACTTA
* * * **** * *
884218 AAATAGAGGCTCTAATATTAATCTTAATTATTTTTAATCAATTATGTGGTTCGAATAATTAAAAT
131 AAATAGAGACTCTAATATTAATCCTAATTAATTTTAATCAATTATACAATTCAAATAACTAAAAT
*
884283 GGAACATCAAGCAAAAGCGAGGACTAAATAAAAAATTC-CCTAAATTTAGGCCTAAAGTGAATA
196 GGAACATCAAGCAAAAGCGAGGACCAAATAAAAAATTCACCTAAATTTAGGCCTAAAGTGAATA
* *
884346 CTCTAATATTAATCATAATTAATTTTAATCACTTATGCAATTCGAATAATTAAAATGGAACCACG
1 CTCTAATATTAATCATAATTAATTTTAACCAATTATGCAATTCGAATAATTAAAATGGAACCACG
*
884411 AGCAAAAAA-AAGGACCAAATTAAGAATTCACATAAATTT-AAGGACTAAATTTGAAATTAAACT
66 AG-AAAAAATAAGGACCAAATTAAAAATTCACAT-AATTTCAAGGACTAAATTTGAAATTAAACT
*
884474 TAAAGT-GATGACTCTAATATTAATCCTAATTAATTTTAATCAATTATACAATTCAAATAACTAA
129 TAAAATAGA-GACTCTAATATTAATCCTAATTAATTTTAATCAATTATACAATTCAAATAACTAA
* ** * * * *
884538 AATGGAACTTCGGGCAAAAGCGATGACCAAGTTAATAATTCACCTAAATTTA
193 AATGGAACATCAAGCAAAAGCGAGGACCAAATAAAAAATTCACCTAAATTTA
884590 AGGATTAAAT
Statistics
Matches: 207, Mismatches: 33, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
257 2 0.01
258 184 0.89
259 21 0.10
ACGTcount: A:0.44, C:0.13, G:0.11, T:0.31
Consensus pattern (259 bp):
CTCTAATATTAATCATAATTAATTTTAACCAATTATGCAATTCGAATAATTAAAATGGAACCACG
AGAAAAAATAAGGACCAAATTAAAAATTCACATAATTTCAAGGACTAAATTTGAAATTAAACTTA
AAATAGAGACTCTAATATTAATCCTAATTAATTTTAATCAATTATACAATTCAAATAACTAAAAT
GGAACATCAAGCAAAAGCGAGGACCAAATAAAAAATTCACCTAAATTTAGGCCTAAAGTGAATA
Found at i:885191 original size:14 final size:14
Alignment explanation
Indices: 885153--885196 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
885143 GGGCGACATA
*
885153 AAATAACAAAATTT
1 AAATAACAAAAATT
885167 AAATAGA-AAAAATT
1 AAATA-ACAAAAATT
*
885181 AATTAACAAAAATT
1 AAATAACAAAAATT
885195 AA
1 AA
885197 GGCAATCAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
13 1 0.04
14 24 0.92
15 1 0.04
ACGTcount: A:0.68, C:0.05, G:0.02, T:0.25
Consensus pattern (14 bp):
AAATAACAAAAATT
Found at i:889711 original size:19 final size:20
Alignment explanation
Indices: 889687--889729 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
889677 CATTTTAAAA
889687 ATTTTAAATT-ATAATATAT
1 ATTTTAAATTGATAATATAT
889706 ATTTT-AATTGATAATATAT
1 ATTTTAAATTGATAATATAT
889725 -TTTTA
1 ATTTTA
889730 TCTTATTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (20 bp):
ATTTTAAATTGATAATATAT
Found at i:892711 original size:13 final size:13
Alignment explanation
Indices: 892695--892720 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
892685 TAAATGATTT
892695 AAATATAAATATA
1 AAATATAAATATA
892708 AAATATAAATATA
1 AAATATAAATATA
892721 GTTTATCATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
AAATATAAATATA
Found at i:892711 original size:22 final size:21
Alignment explanation
Indices: 892670--892709 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
892660 ATCTAATTCA
892670 ATTTAAATTAAATAATAAATG
1 ATTTAAATTAAATAATAAATG
892691 ATTTAAATATAAAT-ATAAA
1 ATTTAAAT-TAAATAATAAA
892710 ATATAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.38
Consensus pattern (21 bp):
ATTTAAATTAAATAATAAATG
Found at i:893418 original size:138 final size:138
Alignment explanation
Indices: 893170--893442 Score: 467
Period size: 138 Copynumber: 2.0 Consensus size: 138
893160 ACTGCCGGAT
* *
893170 GTCTTTCACGGACGATGCTCTCAACCTAGCGTTGGGGGTAGCCTACTACCTACCTCTCCCTTACC
1 GTCTTTCACGGAAGATGCTCTCAACCTAGCGTTGGAGGTAGCCTACTACCTACCTCTCCCTTACC
893235 CTATTACATATGAGAATATGGGTTTGACATTTTTATAGATGGTCACTAAAATAAAGAGTTTTATG
66 CTATTACATATGAGAATATGGGTTTGACATTTTTATAGATGGTCACTAAAATAAAGAGTTTTATG
893300 TTGTGGAG
131 TTGTGGAG
* * * * *
893308 GTCTTTCACGGAAGTTGCTCTCAATCTGGCGTTGGAGGTAGCCTACTACCTACTTC-CCTCTTAT
1 GTCTTTCACGGAAGATGCTCTCAACCTAGCGTTGGAGGTAGCCTACTACCTACCTCTCC-CTTAC
893372 CCTATTACATATGAGAATATGGGTTTGACATTTTTATAGATGGTCACTAAAATAAAGAGTTTTAT
65 CCTATTACATATGAGAATATGGGTTTGACATTTTTATAGATGGTCACTAAAATAAAGAGTTTTAT
893437 GTTGTG
130 GTTGTG
893443 TAACAGGATT
Statistics
Matches: 127, Mismatches: 7, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
137 2 0.02
138 125 0.98
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (138 bp):
GTCTTTCACGGAAGATGCTCTCAACCTAGCGTTGGAGGTAGCCTACTACCTACCTCTCCCTTACC
CTATTACATATGAGAATATGGGTTTGACATTTTTATAGATGGTCACTAAAATAAAGAGTTTTATG
TTGTGGAG
Found at i:901440 original size:275 final size:280
Alignment explanation
Indices: 900944--901503 Score: 1076
Period size: 275 Copynumber: 2.0 Consensus size: 280
900934 AAACAGGAAG
900944 AAAAAACAATGTTTAACATTCTGTCCTTTGCATCAAATTTCCAGGAAACTAAGGCAAATTTATGT
1 AAAAAACAATGTTTAACATTCTGTCCTTTGCATCAAATTTCCAGGAAACTAAGGCAAATTTATGT
901009 CTTTCCGTTCAAACTTCAAAGCTCAAACAAATTATATCACTATGAAAATACACACAAATCATGAA
66 CTTTCCGTTCAAACTTCAAAGCTCAAACAAATTATATCACTATGAAAATACACACAAATCATGAA
901074 GATAGCTAAAAGTTATCAAAAAAATATACAATTCATCACAAATCAACGAATCATCACTGCCTATC
131 GATAGCTAAAAGTTATCAAAAAAATATACAATTCATCACAAATCAACGAATCATCACTGCCTATC
901139 GAATTCATAAAGCTAGAGCATGCACATATAAAT-AATAAC-AAAAC-AAACAAACCCAGAAATCC
196 GAATTCATAAAGCTAGAGCATGCACATATAAATAAATAACAAAAACAAAACAAACCCAGAAATCC
901201 -AAAA-AGAACAAAGAAATC
261 AAAAAGAGAACAAAGAAATC
*
901219 AAAAGACAATGTTTAACATTCTGTCCTTTGCATCAAATTTCCAGGAAACTAAGGCAAATTTATGT
1 AAAAAACAATGTTTAACATTCTGTCCTTTGCATCAAATTTCCAGGAAACTAAGGCAAATTTATGT
901284 CTTTCCGTTCAAACTTCAAAGCTCAAACAAATTATATCACTATGAAAATACACACAAATCATGAA
66 CTTTCCGTTCAAACTTCAAAGCTCAAACAAATTATATCACTATGAAAATACACACAAATCATGAA
901349 GATAGCTAAAAGTTATCAAAAAAATATACAATTCATCACAAATCAACGAATCATCACTGCCTATC
131 GATAGCTAAAAGTTATCAAAAAAATATACAATTCATCACAAATCAACGAATCATCACTGCCTATC
901414 GAATTCATAAAGCTAGAGCATGCACATATAAATAAATAACAAAAACAAAACAAACCCAGAAATCC
196 GAATTCATAAAGCTAGAGCATGCACATATAAATAAATAACAAAAACAAAACAAACCCAGAAATCC
901479 AAAAAGAGAACAAAGAAATC
261 AAAAAGAGAACAAAGAAATC
901499 AAAAA
1 AAAAA
901504 GCTTACCTTT
Statistics
Matches: 278, Mismatches: 2, Indels: 5
0.98 0.01 0.02
Matches are distributed among these distances:
275 227 0.82
276 6 0.02
277 5 0.02
278 18 0.06
279 4 0.01
280 18 0.06
ACGTcount: A:0.48, C:0.20, G:0.09, T:0.23
Consensus pattern (280 bp):
AAAAAACAATGTTTAACATTCTGTCCTTTGCATCAAATTTCCAGGAAACTAAGGCAAATTTATGT
CTTTCCGTTCAAACTTCAAAGCTCAAACAAATTATATCACTATGAAAATACACACAAATCATGAA
GATAGCTAAAAGTTATCAAAAAAATATACAATTCATCACAAATCAACGAATCATCACTGCCTATC
GAATTCATAAAGCTAGAGCATGCACATATAAATAAATAACAAAAACAAAACAAACCCAGAAATCC
AAAAAGAGAACAAAGAAATC
Found at i:918862 original size:12 final size:12
Alignment explanation
Indices: 918845--918869 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
918835 TTGAATAATG
918845 AATATTCGTCTA
1 AATATTCGTCTA
918857 AATATTCGTCTA
1 AATATTCGTCTA
918869 A
1 A
918870 GGAAATCCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (12 bp):
AATATTCGTCTA
Found at i:928641 original size:2 final size:2
Alignment explanation
Indices: 928634--928678 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
928624 TAATACATAC
928634 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
928676 AT A
1 AT A
928679 CAGGACCACA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:929088 original size:55 final size:56
Alignment explanation
Indices: 929001--929425 Score: 518
Period size: 55 Copynumber: 7.7 Consensus size: 56
928991 AACAGGTTCA
* * * * *
929001 CTCCCTATTTCTTTCAG-GTAGTAT-AGAACTCAAATAATCTTCAATAATCT-TGTTTA
1 CTCCCTATTTC-TTCAGAG-AGTATGAG-ACTCGAACAATCTTCAACAATCTGTGTCTG
* *
929057 CTCTCTATTTCTTCAGAGAGTATGAGACTCAAACAATCTTCAACAATC-GTGTCTG
1 CTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCTGTGTCTG
929112 CTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATC-GTGTCTG
1 CTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCTGTGTCTG
* *
929167 CTCCCTATTTCTTCAGAGAGTATAAGACTTGAACAATCTTCAACAAT-TGTGTCTG
1 CTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCTGTGTCTG
* *
929222 CTCCCTATTTCTTCAGAGGGTATGAGACTCGAACAATCTTCAATAAT-TGTGTCTG
1 CTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCTGTGTCTG
* * **
929277 CTCCCTA-TTCTTTAAGAGAGTATGAGACTCAAACAATCTTCAGTAAT-TGTGTCTG
1 CTCCCTATTTC-TTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCTGTGTCTG
* * *
929332 CTCCCTA-TTCTTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATC-GTATCCG
1 CTCCCTATTTC-TTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCTGTGTCTG
* *
929387 TTCCCTA-TTCTTCAGGGAGTAT-AGAACTCGAA-AATCTTC
1 CTCCCTATTTCTTCAGAGAGTATGAG-ACTCGAACAATCTTC
929426 TTCTTATGGG
Statistics
Matches: 336, Mismatches: 26, Indels: 17
0.89 0.07 0.04
Matches are distributed among these distances:
53 9 0.03
54 21 0.06
55 293 0.87
56 13 0.04
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.34
Consensus pattern (56 bp):
CTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCTGTGTCTG
Found at i:929452 original size:54 final size:54
Alignment explanation
Indices: 929394--930455 Score: 1429
Period size: 54 Copynumber: 19.6 Consensus size: 54
929384 CCGTTCCCTA
* *
929394 TTCTTCAGGGAGTATAGAACTCGAAAATCTTCTTCTTATGGGTTCGCTCCCTCT
1 TTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTACGGGTTCGCTCCCTCT
* *
929448 TTCTTCAGGAAGTATAGAACTCAAAAAATCTTCTTCTTACGGGTTCACTCCCTCT
1 TTCTTCAGGAAGTATAGAACTC-GAAAATCTTCTTCTTACGGGTTCGCTCCCTCT
*
929503 TTCTTCAGGAAGTATAGAACTCGAGAATCTTCTTCTTACGGGTTCGCTCCCTCT
1 TTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTACGGGTTCGCTCCCTCT
* * *
929557 TTCTTCAGGGAGTATAGAACTCGAAAATCTTCTTGTTACGGGTTCGCTCCTTCT
1 TTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTACGGGTTCGCTCCCTCT
*
929611 TTCTTCAGGAAGTATAGAACTCAAAAAATCTTCTTCTTACGGGTTCGCTCCCTCT
1 TTCTTCAGGAAGTATAGAACTC-GAAAATCTTCTTCTTACGGGTTCGCTCCCTCT
*
929666 TTCTTCAGGAAGTATAGAACTCGAGAATCTTCTTCTTACGGGTTCGCTTCGCTCCCTCT
1 TTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTAC-GG---G-TTCGCTCCCTCT
* * * ** *
929725 TTCTTCAAGAAGTATAGAACTTGAACATCTTCTTCAAACGGGTTCGCTACCTCT
1 TTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTACGGGTTCGCTCCCTCT
* * *
929779 TTCTTCAGGAAGTATAGAACTCAAAAATCTTCTTCTTATGGGTTCGCTCTCTCT
1 TTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTACGGGTTCGCTCCCTCT
* * *
929833 TTCTTCAGGAAGTATACAACTCGAGAATCTTCTTCTTACGGGTTCGCTACCTCT
1 TTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTACGGGTTCGCTCCCTCT
* *
929887 TTCTTCAGGAAGTATAGAACTCTAAGATCTTCTTCTTACGGGTTCGCTCCCTCT
1 TTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTACGGGTTCGCTCCCTCT
* *
929941 TTCTTCAGGAAGTATAGAACTCGAAAATCTTTTTCTTACAGGTTCGCTCCCTCT
1 TTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTACGGGTTCGCTCCCTCT
* *** **
929995 TTCTTCAAGG-AGTATAGAACTCGAACATCTTCTTGAAATAGGTTCGCTCCCTCT
1 TTCTTC-AGGAAGTATAGAACTCGAAAATCTTCTTCTTACGGGTTCGCTCCCTCT
* * * *
930049 TTCTTCAGGGAGTATAGAACTTGAGAATCTTCTTCTTACGGGTTCGCTACCTCT
1 TTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTACGGGTTCGCTCCCTCT
* *
930103 TTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTACGGGTTCACTCACTCT
1 TTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTACGGGTTCGCTCCCTCT
* *
930157 TTCTTCAGGAAGTATAGAACTCGAAAATATTCTTCTTACAGGTTCGCTCCCTCT
1 TTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTACGGGTTCGCTCCCTCT
* * * **
930211 TTCTTCAGGGAGTATAGAACTCGAACATATTCTTCAAACGGGTTCGCTCCCTCT
1 TTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTACGGGTTCGCTCCCTCT
* * **
930265 TTCTTCAGGGAGTATAAAACTCGAAAA---TCTTCAAACGGGTTCGCTCCCTCT
1 TTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTACGGGTTCGCTCCCTCT
**** * *
930316 TTCTTCA-GAGAGTATAGAACTCGAACAATCTTCTAAAAATGGGTTCGTTCCCTCT
1 TTCTTCAGGA-AGTATAGAACTCGAA-AATCTTCTTCTTACGGGTTCGCTCCCTCT
* * **
930371 TTCTTCAGGGAGTATATAACTCGAAAA---TCTTCAAACGGGTTCGCTCCCTCT
1 TTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTACGGGTTCGCTCCCTCT
* *
930422 TTCTTCAGGGAGTATAGAACTCAAAAATCTTCTT
1 TTCTTCAGGAAGTATAGAACTCGAAAATCTTCTT
930456 TTGCTTCACT
Statistics
Matches: 896, Mismatches: 94, Indels: 36
0.87 0.09 0.04
Matches are distributed among these distances:
50 1 0.00
51 90 0.10
52 2 0.00
53 3 0.00
54 602 0.67
55 149 0.17
56 1 0.00
58 3 0.00
59 45 0.05
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (54 bp):
TTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTACGGGTTCGCTCCCTCT
Found at i:932467 original size:124 final size:124
Alignment explanation
Indices: 932237--932467 Score: 286
Period size: 124 Copynumber: 1.9 Consensus size: 124
932227 TTATACTAGT
* * * * *
932237 ACGGGCCTTCAAAATGCCCCAACATCTCAGATTGTAAGGCTTACTCTTAATGCCTTCTTGATCTA
1 ACGGGCCTTCAAAATACCCCAACACCTCAAATTGTAAGGCTCACTCTTAATGCCTCCTTGATCTA
* * *
932302 TATATTGTCCTCTCAATATGATGTGGGTTCAGTCATTCCCCATCAGTGTCTTAACTGGC
66 TATATTGACCTCTCAACATGATGTGGGTTCAGTCATGCCCCATCAGTGTCTTAACTGGC
* * * * * *
932361 ACGGGCCTTCAAAATACCTCATCACCTCAAATTGTAAGTCTCATTCTTCATGCCTCCTTGGTCTG
1 ACGGGCCTTCAAAATACCCCAACACCTCAAATTGTAAGGCTCACTCTTAATGCCTCCTTGATCT-
* *
932426 A-ATCTT-ACCATCTCAACATGATGTGGGTTCAGTCGTGCCCCA
65 ATATATTGACC-TCTCAACATGATGTGGGTTCAGTCATGCCCCA
932468 ATATATCACA
Statistics
Matches: 89, Mismatches: 16, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
123 2 0.02
124 86 0.97
125 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.16, T:0.32
Consensus pattern (124 bp):
ACGGGCCTTCAAAATACCCCAACACCTCAAATTGTAAGGCTCACTCTTAATGCCTCCTTGATCTA
TATATTGACCTCTCAACATGATGTGGGTTCAGTCATGCCCCATCAGTGTCTTAACTGGC
Found at i:933748 original size:17 final size:18
Alignment explanation
Indices: 933728--933805 Score: 69
Period size: 17 Copynumber: 4.6 Consensus size: 18
933718 TTTTCTTTCA
933728 TTCTCTTT-TTTTCATTT
1 TTCTCTTTCTTTTCATTT
* *
933745 TTCTCACTTCTAATT--TTT
1 TTCTC-TTTCT-TTTCATTT
*
933763 TTCT-TTTCTTTTCTTTT
1 TTCTCTTTCTTTTCATTT
933780 TTCT-TTTCTTTTC-TTT
1 TTCTCTTTCTTTTCATTT
933796 TTCTCTTTCT
1 TTCTCTTTCT
933806 ACATTTCTCT
Statistics
Matches: 51, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
15 2 0.04
16 11 0.22
17 26 0.51
18 9 0.18
19 1 0.02
20 2 0.04
ACGTcount: A:0.05, C:0.21, G:0.00, T:0.74
Consensus pattern (18 bp):
TTCTCTTTCTTTTCATTT
Found at i:933771 original size:5 final size:5
Alignment explanation
Indices: 933761--933796 Score: 54
Period size: 5 Copynumber: 6.8 Consensus size: 5
933751 CTTCTAATTT
933761 TTTTC TTTTC TTTTC TTTTTTC TTTTC TTTTC TTTT
1 TTTTC TTTTC TTTTC --TTTTC TTTTC TTTTC TTTT
933797 TCTCTTTCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 24 0.83
7 5 0.17
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTC
Found at i:933781 original size:12 final size:12
Alignment explanation
Indices: 933766--933791 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
933756 AATTTTTTTC
933766 TTTTCTTTTCTT
1 TTTTCTTTTCTT
933778 TTTTCTTTTCTT
1 TTTTCTTTTCTT
933790 TT
1 TT
933792 CTTTTTCTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTCTTTTCTT
Found at i:933804 original size:22 final size:22
Alignment explanation
Indices: 933761--933805 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
933751 CTTCTAATTT
*
933761 TTTTCTTTTCTTTTCTTTTTTC
1 TTTTCTTTTCTTTTCTTCTTTC
933783 TTTTCTTTTCTTTT-TCTCTTTC
1 TTTTCTTTTCTTTTCT-TCTTTC
933805 T
1 T
933806 ACATTTCTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 1 0.05
22 20 0.95
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (22 bp):
TTTTCTTTTCTTTTCTTCTTTC
Found at i:936358 original size:21 final size:21
Alignment explanation
Indices: 936334--936388 Score: 85
Period size: 21 Copynumber: 2.6 Consensus size: 21
936324 CAATGCGAAG
936334 TGGTCTTCAT-GTCTTTATGAA
1 TGGTCTTC-TCGTCTTTATGAA
936355 TGGTCTTCTCGTCTTTATGAA
1 TGGTCTTCTCGTCTTTATGAA
*
936376 TGATCTTCTCGTC
1 TGGTCTTCTCGTC
936389 CTTGGTATGA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 1 0.03
21 31 0.97
ACGTcount: A:0.15, C:0.20, G:0.18, T:0.47
Consensus pattern (21 bp):
TGGTCTTCTCGTCTTTATGAA
Found at i:940815 original size:21 final size:20
Alignment explanation
Indices: 940791--940829 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
940781 TATTTTTATT
940791 TAAAACTAATTATAAAATACA
1 TAAAACTAA-TATAAAATACA
* *
940812 TAAAATTAATATTAAATA
1 TAAAACTAATATAAAATA
940830 TATATTTTTG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (20 bp):
TAAAACTAATATAAAATACA
Found at i:943070 original size:11 final size:11
Alignment explanation
Indices: 943047--943080 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
943037 TAATAGATGA
943047 TCAAAACAAACT
1 TCAAAA-AAACT
943059 TCAAAAAAACT
1 TCAAAAAAACT
*
943070 TCGAAAAAACT
1 TCAAAAAAACT
943081 CTATCTGCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 15 0.71
12 6 0.29
ACGTcount: A:0.59, C:0.21, G:0.03, T:0.18
Consensus pattern (11 bp):
TCAAAAAAACT
Found at i:951057 original size:203 final size:204
Alignment explanation
Indices: 950708--951114 Score: 807
Period size: 203 Copynumber: 2.0 Consensus size: 204
950698 TATTGTCGGA
950708 AGGTTGGAATGTGAACCAATCTCCATTGATCTCATTTTCTAATTCCCCCTAGTCTGGAGGATTTT
1 AGGTTGGAATGTGAACCAATCTCCATTGATCTCATTTTCTAATTCCCCCTAGTCTGGAGGATTTT
950773 AGAGGACATTATTCTGCTTAATGATTTCCATTTTACCCCTCAATATTTATTGAAATAATTATCTT
66 AGAGGACATTATTCTGCTTAATGATTTCCATTTTACCCCTCAATATTTATTGAAATAATTATCTT
950838 AAGTTGAAATGATAATGGCTTAAAATTCCCTTACTTTACTCTCATCTACTCCCAAA-AACTTAGC
131 AAGTTGAAATGATAATGGCTTAAAATTCCCTTACTTTACTCTCATCTACTCCCAAATAACTTAGC
950902 GAATAGTGG
196 GAATAGTGG
950911 AGGTTGGAATGTGAACCAATCTCCATTGATCTCATTTTCTAATTCCCCCTAGTCTGGAGGATTTT
1 AGGTTGGAATGTGAACCAATCTCCATTGATCTCATTTTCTAATTCCCCCTAGTCTGGAGGATTTT
950976 AGAGGACATTATTCTGCTTAATGATTTCCATTTTACCCCTCAATATTTATTGAAATAATTATCTT
66 AGAGGACATTATTCTGCTTAATGATTTCCATTTTACCCCTCAATATTTATTGAAATAATTATCTT
951041 AAGTTGAAATGATAATGGCTTAAAATTCCCTTACTTTACTCTCATCTACTCCCAAATAACTTAGC
131 AAGTTGAAATGATAATGGCTTAAAATTCCCTTACTTTACTCTCATCTACTCCCAAATAACTTAGC
951106 GAATAGTGG
196 GAATAGTGG
951115 TTTACTCTCG
Statistics
Matches: 203, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
203 186 0.92
204 17 0.08
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (204 bp):
AGGTTGGAATGTGAACCAATCTCCATTGATCTCATTTTCTAATTCCCCCTAGTCTGGAGGATTTT
AGAGGACATTATTCTGCTTAATGATTTCCATTTTACCCCTCAATATTTATTGAAATAATTATCTT
AAGTTGAAATGATAATGGCTTAAAATTCCCTTACTTTACTCTCATCTACTCCCAAATAACTTAGC
GAATAGTGG
Found at i:965988 original size:64 final size:62
Alignment explanation
Indices: 965920--966148 Score: 253
Period size: 64 Copynumber: 3.6 Consensus size: 62
965910 TGTTTGAATG
* * * *
965920 TGCATCGATGCATTGGTAGTGCATCGATGCACTCTTTTAAAAGAAGAACATTGAATGCCTTTGA
1 TGCATCGATGCATAGGTAGTGCATCGATGCA-TCTTTTAAAAGAA-AACATCGAATGCATTTAA
* * * * *
965984 TGCATCGATGCATAGCTAATGCATCGATGCATCCTTTTAAAATAATAACATCGAATGCAATCAA
1 TGCATCGATGCATAGGTAGTGCATCGATGCAT-CTTTTAAAAGAA-AACATCGAATGCATTTAA
* *
966048 TGCATCGATGCATAAGG-AGTGCATCGATGCATCTCATTAATAAGGAAACATCGAATGCATTTAA
1 TGCATCGATGCAT-AGGTAGTGCATCGATGCATCT-TTTAA-AAGAAAACATCGAATGCATTTAA
* * *
966112 TGCACCGATGCACAAGTAGTGCATCGATGCATACTTT
1 TGCATCGATGCATAGGTAGTGCATCGATGCAT-CTTT
966149 CATTAAAAGA
Statistics
Matches: 138, Mismatches: 21, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
63 5 0.04
64 126 0.91
65 7 0.05
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.28
Consensus pattern (62 bp):
TGCATCGATGCATAGGTAGTGCATCGATGCATCTTTTAAAAGAAAACATCGAATGCATTTAA
Found at i:966788 original size:15 final size:15
Alignment explanation
Indices: 966770--966876 Score: 205
Period size: 15 Copynumber: 7.1 Consensus size: 15
966760 GAGGGTATAA
966770 TAGTCCTTCGGGATG
1 TAGTCCTTCGGGATG
966785 TAGTCCTTCGGGATG
1 TAGTCCTTCGGGATG
966800 TAGTCCTTCGGGATG
1 TAGTCCTTCGGGATG
966815 TAGTCCTTCGGGATG
1 TAGTCCTTCGGGATG
*
966830 TAGTCATTCGGGATG
1 TAGTCCTTCGGGATG
966845 TAGTCCTTCGGGATG
1 TAGTCCTTCGGGATG
966860 TAGTCCTTCGGGATG
1 TAGTCCTTCGGGATG
966875 TA
1 TA
966877 ATGGTCCTAC
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
15 90 1.00
ACGTcount: A:0.15, C:0.19, G:0.33, T:0.34
Consensus pattern (15 bp):
TAGTCCTTCGGGATG
Found at i:966889 original size:18 final size:19
Alignment explanation
Indices: 966860--966915 Score: 60
Period size: 22 Copynumber: 2.8 Consensus size: 19
966850 CTTCGGGATG
*
966860 TAGTCCTTCGGGATG-TAA
1 TAGTCCTACGGGATGATAA
*
966878 TGGTCCTACGGGACATAGATAA
1 TAGTCCTACGGG--AT-GATAA
966900 TAGTCCTACGGGATGA
1 TAGTCCTACGGGATGA
966916 ATACTGAACT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
18 10 0.32
19 2 0.06
20 4 0.13
21 1 0.03
22 14 0.45
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.27
Consensus pattern (19 bp):
TAGTCCTACGGGATGATAA
Found at i:971592 original size:15 final size:15
Alignment explanation
Indices: 971572--971624 Score: 97
Period size: 15 Copynumber: 3.5 Consensus size: 15
971562 CAAGAGTCGA
971572 GGGATGTAGTCCTTC
1 GGGATGTAGTCCTTC
971587 GGGATGTAGTCCTTC
1 GGGATGTAGTCCTTC
*
971602 GGGATATAGTCCTTC
1 GGGATGTAGTCCTTC
971617 GGGATGTA
1 GGGATGTA
971625 ATGGTCCTAC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.17, C:0.17, G:0.34, T:0.32
Consensus pattern (15 bp):
GGGATGTAGTCCTTC
Found at i:971637 original size:18 final size:19
Alignment explanation
Indices: 971607--971663 Score: 62
Period size: 22 Copynumber: 2.9 Consensus size: 19
971597 CCTTCGGGAT
*
971607 ATAGTCCTTCGGGATG-TA
1 ATAGTCCTACGGGATGATA
*
971625 ATGGTCCTACGGGACATAGATA
1 ATAGTCCTACGGG--AT-GATA
971647 ATAGTCCTACGGGATGA
1 ATAGTCCTACGGGATGA
971664 ATATTGAACT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
18 11 0.34
19 2 0.06
20 4 0.12
21 1 0.03
22 14 0.44
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (19 bp):
ATAGTCCTACGGGATGATA
Found at i:971638 original size:33 final size:30
Alignment explanation
Indices: 971572--971643 Score: 90
Period size: 30 Copynumber: 2.3 Consensus size: 30
971562 CAAGAGTCGA
* *
971572 GGGATGTAGTCCTTCGGGATGTAGTCCTTC
1 GGGATATAGTCCTTCGGGATGTAGTCCTAC
971602 GGGATATAGTCCTTCGGGATGTAATGGTCCTAC
1 GGGATATAGTCCTTCGGGATGT-A--GTCCTAC
*
971635 GGGACATAG
1 GGGATATAG
971644 ATAATAGTCC
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
30 21 0.58
31 1 0.03
33 14 0.39
ACGTcount: A:0.19, C:0.18, G:0.33, T:0.29
Consensus pattern (30 bp):
GGGATATAGTCCTTCGGGATGTAGTCCTAC
Found at i:972949 original size:15 final size:16
Alignment explanation
Indices: 972919--972952 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
972909 ATGTTTCTAC
972919 ATTATATGAATATTTT
1 ATTATATGAATATTTT
*
972935 ATTATAT-ATTATTTT
1 ATTATATGAATATTTT
972950 ATT
1 ATT
972953 CTCACATGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (16 bp):
ATTATATGAATATTTT
Found at i:973107 original size:14 final size:14
Alignment explanation
Indices: 973088--973122 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
973078 CGTTCGGTAA
*
973088 TATGTTTGTTCGTT
1 TATGTTTGTTCATT
*
973102 TATGTTCGTTCATT
1 TATGTTTGTTCATT
973116 TATGTTT
1 TATGTTT
973123 ATTTATGTGC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.11, C:0.09, G:0.17, T:0.63
Consensus pattern (14 bp):
TATGTTTGTTCATT
Found at i:973127 original size:24 final size:24
Alignment explanation
Indices: 973100--973147 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
973090 TGTTTGTTCG
*
973100 TTTATGTTCGTTCATTTATGTTTA
1 TTTATGTGCGTTCATTTATGTTTA
*
973124 TTTATGTGCTTTCATTTATGTTTA
1 TTTATGTGCGTTCATTTATGTTTA
973148 ACCCAATCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.17, C:0.08, G:0.12, T:0.62
Consensus pattern (24 bp):
TTTATGTGCGTTCATTTATGTTTA
Found at i:974497 original size:61 final size:60
Alignment explanation
Indices: 974370--974505 Score: 134
Period size: 61 Copynumber: 2.2 Consensus size: 60
974360 TAGTCGAGTG
* * * * *
974370 ACCATTTTGTAACTTTTAATAGTCGAGGAACTCAACAAAATATCATTCTATAGTCTAAGA
1 ACCATTTTGTAACTTTTAATAATCGAAGAACTCAACAAAACATCATCCTATAATCTAAGA
* * **
974430 ATCATTTTGTAATTTTTAAATAAT-GAAAGAACTCAACAAAACATTGTCCTATAATCT-AGCA
1 ACCATTTTGTAACTTTT-AATAATCG-AAGAACTCAACAAAACATCATCCTATAATCTAAG-A
974491 ACCA-TTTGTATACTT
1 ACCATTTTGTA-ACTT
974506 ACTTTTTTTT
Statistics
Matches: 61, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
60 24 0.39
61 37 0.61
ACGTcount: A:0.39, C:0.16, G:0.10, T:0.35
Consensus pattern (60 bp):
ACCATTTTGTAACTTTTAATAATCGAAGAACTCAACAAAACATCATCCTATAATCTAAGA
Found at i:976851 original size:59 final size:58
Alignment explanation
Indices: 976742--976858 Score: 141
Period size: 59 Copynumber: 2.0 Consensus size: 58
976732 TCGGGTGACT
* * *
976742 ATTTTATAACTTTTAATAGTTGAAGTACTCAACAAAACAACATCCTATAATCGATGGACA
1 ATTTTATAACTTTTAATAGTCG-AGAACTCAACAAAACAACATCCAATAATCGA-GGACA
976802 ATTTTATAACTTTTTAATAGTCG-GAACTCAACAAAAC-A-ATGCTCAATAATCGAGGAC
1 ATTTTATAAC-TTTTAATAGTCGAGAACTCAACAAAACAACAT-C-CAATAATCGAGGAC
976859 CACTTATGTA
Statistics
Matches: 51, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
57 2 0.04
58 6 0.12
59 22 0.43
60 10 0.20
61 11 0.22
ACGTcount: A:0.41, C:0.17, G:0.11, T:0.31
Consensus pattern (58 bp):
ATTTTATAACTTTTAATAGTCGAGAACTCAACAAAACAACATCCAATAATCGAGGACA
Found at i:978055 original size:12 final size:12
Alignment explanation
Indices: 978030--978099 Score: 70
Period size: 12 Copynumber: 5.8 Consensus size: 12
978020 ACGAAGATAT
* *
978030 CAGAAATCAAAA
1 CAGAATTCAGAA
978042 CAGAATTCAGAA
1 CAGAATTCAGAA
978054 CAG-ATATCAGAA
1 CAGAAT-TCAGAA
* *
978066 CAGAATCCAGAT
1 CAGAATTCAGAA
* *
978078 CAGAAATCATAA
1 CAGAATTCAGAA
978090 CAGAATTCAG
1 CAGAATTCAG
978100 GTCATTTATC
Statistics
Matches: 46, Mismatches: 10, Indels: 4
0.77 0.17 0.07
Matches are distributed among these distances:
11 2 0.04
12 42 0.91
13 2 0.04
ACGTcount: A:0.51, C:0.19, G:0.14, T:0.16
Consensus pattern (12 bp):
CAGAATTCAGAA
Found at i:978099 original size:48 final size:48
Alignment explanation
Indices: 978028--978119 Score: 139
Period size: 48 Copynumber: 1.9 Consensus size: 48
978018 AAACGAAGAT
978028 ATCAGAAATCAAAACAGAATTCAGAACAGATATCAGAACAGAATCCAG
1 ATCAGAAATCAAAACAGAATTCAGAACAGATATCAGAACAGAATCCAG
* ** **
978076 ATCAGAAATCATAACAGAATTCAGGTCATTTATCAGAACAGAAT
1 ATCAGAAATCAAAACAGAATTCAGAACAGATATCAGAACAGAAT
978120 TCAAGTCGGA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 39 1.00
ACGTcount: A:0.49, C:0.17, G:0.14, T:0.20
Consensus pattern (48 bp):
ATCAGAAATCAAAACAGAATTCAGAACAGATATCAGAACAGAATCCAG
Found at i:978132 original size:48 final size:48
Alignment explanation
Indices: 978028--978134 Score: 135
Period size: 48 Copynumber: 2.2 Consensus size: 48
978018 AAACGAAGAT
*
978028 ATCAGAAATCAAAACAGAATTCAGAACAGATATCAGAACAGAATCCAG
1 ATCAGAAATCAAAACAGAATTCAGAACAGATATCAGAACAGAATCAAG
* ** **
978076 ATCAGAAATCATAACAGAATTCAGGTCATTTATCAGAACAGAATTCAAG
1 ATCAGAAATCAAAACAGAATTCAGAACAGATATCAGAACAGAA-TCAAG
*
978125 -TCGGAAATCA
1 ATCAGAAATCA
978135 GATAAAATAT
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
48 47 0.92
49 4 0.08
ACGTcount: A:0.48, C:0.18, G:0.15, T:0.20
Consensus pattern (48 bp):
ATCAGAAATCAAAACAGAATTCAGAACAGATATCAGAACAGAATCAAG
Found at i:978134 original size:24 final size:25
Alignment explanation
Indices: 978028--978136 Score: 100
Period size: 24 Copynumber: 4.5 Consensus size: 25
978018 AAACGAAGAT
*
978028 ATCAGAAATCAAAACAGAATTC-AG
1 ATCAGAAATCAGAACAGAATTCAAG
* * *
978052 AACAGATATCAGAACAGAA-TCCAG
1 ATCAGAAATCAGAACAGAATTCAAG
*
978076 ATCAGAAATCATAACAGAATTC-AG
1 ATCAGAAATCAGAACAGAATTCAAG
* ***
978100 GTCATTTATCAGAACAGAATTCAAG
1 ATCAGAAATCAGAACAGAATTCAAG
*
978125 -TCGGAAATCAGA
1 ATCAGAAATCAGA
978137 TAAAATATTT
Statistics
Matches: 67, Mismatches: 15, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
23 2 0.03
24 61 0.91
25 4 0.06
ACGTcount: A:0.48, C:0.17, G:0.16, T:0.19
Consensus pattern (25 bp):
ATCAGAAATCAGAACAGAATTCAAG
Found at i:979283 original size:18 final size:18
Alignment explanation
Indices: 979262--979297 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
979252 CTTCCATCCG
*
979262 ATCTTATTATTTAATTCA
1 ATCTTATCATTTAATTCA
*
979280 ATCTTATCATTTACTTCA
1 ATCTTATCATTTAATTCA
979298 GTCCTTTCGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.17, G:0.00, T:0.53
Consensus pattern (18 bp):
ATCTTATCATTTAATTCA
Found at i:980619 original size:13 final size:13
Alignment explanation
Indices: 980601--980674 Score: 76
Period size: 13 Copynumber: 5.3 Consensus size: 13
980591 GTGGGTCAAC
980601 GGTCAACGGGTCG
1 GGTCAACGGGTCG
980614 GGTCAACGGGTCGGGTCG
1 GGTCAA-----CGGGTCG
*
980632 GGTCAACTGGTCG
1 GGTCAACGGGTCG
*
980645 GGTAAACGGGTCG
1 GGTCAACGGGTCG
*
980658 GGTAAACGGGTCG
1 GGTCAACGGGTCG
980671 GGTC
1 GGTC
980675 GGGTCGGGTT
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
13 39 0.75
18 13 0.25
ACGTcount: A:0.16, C:0.20, G:0.46, T:0.18
Consensus pattern (13 bp):
GGTCAACGGGTCG
Found at i:980630 original size:18 final size:18
Alignment explanation
Indices: 980607--980647 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
980597 CAACGGTCAA
980607 CGGGTCGGGTCAACGGGT
1 CGGGTCGGGTCAACGGGT
*
980625 CGGGTCGGGTCAACTGGT
1 CGGGTCGGGTCAACGGGT
980643 CGGGT
1 CGGGT
980648 AAACGGGTCG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.10, C:0.22, G:0.49, T:0.20
Consensus pattern (18 bp):
CGGGTCGGGTCAACGGGT
Found at i:980644 original size:31 final size:31
Alignment explanation
Indices: 980601--980660 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
980591 GTGGGTCAAC
*
980601 GGTCAACGGGTCGGGTCAACGGGTCGGGTCG
1 GGTCAACGGGTCGGGTAAACGGGTCGGGTCG
*
980632 GGTCAACTGGTCGGGTAAACGGGTCGGGT
1 GGTCAACGGGTCGGGTAAACGGGTCGGGT
980661 AAACGGGTCG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.15, C:0.20, G:0.47, T:0.18
Consensus pattern (31 bp):
GGTCAACGGGTCGGGTAAACGGGTCGGGTCG
Found at i:983342 original size:20 final size:20
Alignment explanation
Indices: 983303--983342 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
983293 GGTGTCCTTG
*
983303 TTTTATTGTTTTTGTTTTTA
1 TTTTATTGTTTTTGTGTTTA
983323 TTTTATTGATTTTTG-GTTTA
1 TTTTATTG-TTTTTGTGTTTA
983343 GAAAAGGAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.12, C:0.00, G:0.12, T:0.75
Consensus pattern (20 bp):
TTTTATTGTTTTTGTGTTTA
Found at i:991200 original size:34 final size:34
Alignment explanation
Indices: 991139--991206 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 34
991129 TTTATTATCG
* * * *
991139 AGGGTTAGAGTGTTATGTTTATCTTATGTTATTC
1 AGGGTTAGAATGTTATGTGTATATTATGTAATTC
991173 AGGGTTAGAATG-TATTGTGTATATTATGTAATTC
1 AGGGTTAGAATGTTA-TGTGTATATTATGTAATTC
991207 TGGTCTATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
33 2 0.07
34 27 0.93
ACGTcount: A:0.25, C:0.04, G:0.24, T:0.47
Consensus pattern (34 bp):
AGGGTTAGAATGTTATGTGTATATTATGTAATTC
Found at i:994409 original size:21 final size:18
Alignment explanation
Indices: 994386--994441 Score: 69
Period size: 18 Copynumber: 3.1 Consensus size: 18
994376 GCTGCCGCCA
* *
994386 CCACCTCCTCCTCCCCCT
1 CCACCACCTCCTCCTCCT
*
994404 CCACCACCACCTCCTCCT
1 CCACCACCTCCTCCTCCT
994422 CCACCACCT-CTACCTCCT
1 CCACCACCTCCT-CCTCCT
994440 CC
1 CC
994442 GCTTCCGTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
17 2 0.06
18 31 0.94
ACGTcount: A:0.12, C:0.68, G:0.00, T:0.20
Consensus pattern (18 bp):
CCACCACCTCCTCCTCCT
Found at i:994438 original size:15 final size:15
Alignment explanation
Indices: 994401--994431 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
994391 TCCTCCTCCC
*
994401 CCTCCACCACCACCT
1 CCTCCTCCACCACCT
994416 CCTCCTCCACCACCT
1 CCTCCTCCACCACCT
994431 C
1 C
994432 TACCTCCTCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.16, C:0.68, G:0.00, T:0.16
Consensus pattern (15 bp):
CCTCCTCCACCACCT
Found at i:994543 original size:21 final size:21
Alignment explanation
Indices: 994500--994543 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
994490 TCCATTACCT
** *
994500 CCACCTCCGCCACCTTTTCCA
1 CCACCTCCGCCACCTCCTACA
*
994521 CCACCTCCTCCACCTCCTACA
1 CCACCTCCGCCACCTCCTACA
994542 CC
1 CC
994544 GCTTCCGGAC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.16, C:0.61, G:0.02, T:0.20
Consensus pattern (21 bp):
CCACCTCCGCCACCTCCTACA
Found at i:994578 original size:12 final size:12
Alignment explanation
Indices: 994547--994594 Score: 60
Period size: 12 Copynumber: 4.0 Consensus size: 12
994537 CTACACCGCT
994547 TCCGGACCCATA
1 TCCGGACCCATA
* * *
994559 CCCTGACCCGTA
1 TCCGGACCCATA
994571 TCCGGACCCATA
1 TCCGGACCCATA
*
994583 TCCAGACCCATA
1 TCCGGACCCATA
994595 CCCATTGCCT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.25, C:0.44, G:0.15, T:0.17
Consensus pattern (12 bp):
TCCGGACCCATA
Found at i:994632 original size:15 final size:15
Alignment explanation
Indices: 994608--994642 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
994598 ATTGCCTGAT
*
994608 CCACCTCCACCGCCA
1 CCACCGCCACCGCCA
*
994623 CCACCGCCACCTCCA
1 CCACCGCCACCGCCA
994638 CCACC
1 CCACC
994643 ACCTTCTCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.20, C:0.69, G:0.06, T:0.06
Consensus pattern (15 bp):
CCACCGCCACCGCCA
Found at i:995644 original size:19 final size:20
Alignment explanation
Indices: 995609--995646 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
995599 AATTTAACTA
995609 ACAATTTTAATTTAAAAATG
1 ACAATTTTAATTTAAAAATG
995629 ACAATTTTAA-TTAAAAAT
1 ACAATTTTAATTTAAAAAT
995647 AAAATATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.39
Consensus pattern (20 bp):
ACAATTTTAATTTAAAAATG
Found at i:996550 original size:30 final size:30
Alignment explanation
Indices: 996514--996570 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
996504 TTTTTTATCG
996514 AATTAAAAT-TTGAAATTAATAAATTAAACC
1 AATTAAAATCTTG-AATTAATAAATTAAACC
* *
996544 AATTAAATTCTTGAATTGATAAATTAA
1 AATTAAAATCTTGAATTAATAAATTAA
996571 TCAATTATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 21 0.88
31 3 0.12
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.37
Consensus pattern (30 bp):
AATTAAAATCTTGAATTAATAAATTAAACC
Found at i:997690 original size:27 final size:27
Alignment explanation
Indices: 997660--997718 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
997650 TTTTATATAT
* *
997660 TTTTATGTATTTTTTATTGATAATTTA
1 TTTTATATATTTTTTATTAATAATTTA
997687 TTTTATATATTTTTTATTAATAATTTA
1 TTTTATATATTTTTTATTAATAATTTA
*
997714 ATTTA
1 TTTTA
997719 ATTTTTAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (27 bp):
TTTTATATATTTTTTATTAATAATTTA
Found at i:998736 original size:2 final size:2
Alignment explanation
Indices: 998690--998719 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
998680 TACTTTTAAA
998690 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
998720 ATACCATTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1000476 original size:16 final size:16
Alignment explanation
Indices: 1000432--1000494 Score: 54
Period size: 16 Copynumber: 3.7 Consensus size: 16
1000422 ATAATTTTAA
*
1000432 ATTTTATTATTAAAATAA
1 ATTTTA-TA-TAAAATAT
*
1000450 ATTAATTATATAAAATTT
1 ATT--TTATATAAAATAT
*
1000468 ATTTTATATAATATAT
1 ATTTTATATAAAATAT
*
1000484 ATTTTAAATAA
1 ATTTTATATAA
1000495 TAACCTTTTA
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
16 21 0.55
18 12 0.32
19 2 0.05
20 3 0.08
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
ATTTTATATAAAATAT
Found at i:1003247 original size:103 final size:103
Alignment explanation
Indices: 1003063--1003280 Score: 391
Period size: 103 Copynumber: 2.1 Consensus size: 103
1003053 GTCGAGGGTC
*
1003063 TATGTGGTCCTTCAGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCAGGACATATATGTATTCTTTGGAACATATGTGAAGTCTGGTGAGACACATAC
* *
1003128 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGCATATGTATATGATTCTTAAGGAATGA
*
1003166 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATATGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCAGGACATATATGTATTCTTTGGAACATATGTGAAGTCTGGTGAGACACATAC
*
1003231 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGCATATGTATATGATTCTTAAGGAATGA
1003269 TATGTGGTCCTT
1 TATGTGGTCCTT
1003281 ATAGACATTA
Statistics
Matches: 110, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
103 110 1.00
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.37
Consensus pattern (103 bp):
TATGTGGTCCTTCAGGACATATATGTATTCTTTGGAACATATGTGAAGTCTGGTGAGACACATAC
TTGATCCCTAGCATATGTATATGATTCTTAAGGAATGA
Found at i:1003330 original size:23 final size:23
Alignment explanation
Indices: 1003296--1003359 Score: 101
Period size: 23 Copynumber: 2.8 Consensus size: 23
1003286 CATTATTATA
1003296 TGGCACTACGGTGCAATTCTACG
1 TGGCACTACGGTGCAATTCTACG
*
1003319 TGGCACTCCGGTGCAATTCTACG
1 TGGCACTACGGTGCAATTCTACG
* *
1003342 TGGCACTTCGGTGTAATT
1 TGGCACTACGGTGCAATT
1003360 ATATGAGTTG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.19, C:0.25, G:0.27, T:0.30
Consensus pattern (23 bp):
TGGCACTACGGTGCAATTCTACG
Found at i:1010309 original size:14 final size:14
Alignment explanation
Indices: 1010290--1010321 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
1010280 TTATTCTCAT
1010290 GTGTGCTTGTTGAA
1 GTGTGCTTGTTGAA
1010304 GTGTGCTTGTTGAA
1 GTGTGCTTGTTGAA
1010318 GTGT
1 GTGT
1010322 ATTTTGTTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.12, C:0.06, G:0.38, T:0.44
Consensus pattern (14 bp):
GTGTGCTTGTTGAA
Found at i:1019973 original size:32 final size:33
Alignment explanation
Indices: 1019904--1019973 Score: 97
Period size: 34 Copynumber: 2.1 Consensus size: 33
1019894 TAAGCCAAAT
* * *
1019904 TTATTAAATTTAGATATATATTTTATGGAATATA
1 TTATTAAACTTAGATATATATTTTA-GAAATAAA
1019938 TTATTAAACTTAGATATATATTTTA-AAATAAA
1 TTATTAAACTTAGATATATATTTTAGAAATAAA
1019970 TTAT
1 TTAT
1019974 AATAATACTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 9 0.27
34 24 0.73
ACGTcount: A:0.44, C:0.01, G:0.06, T:0.49
Consensus pattern (33 bp):
TTATTAAACTTAGATATATATTTTAGAAATAAA
Found at i:1020012 original size:16 final size:16
Alignment explanation
Indices: 1019991--1020024 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
1019981 CTCTTTTATA
1019991 TATTATTTAATTAAAT
1 TATTATTTAATTAAAT
* *
1020007 TATTATTTTATTTAAT
1 TATTATTTAATTAAAT
1020023 TA
1 TA
1020025 AAATGATATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TATTATTTAATTAAAT
Found at i:1020787 original size:22 final size:22
Alignment explanation
Indices: 1020759--1021012 Score: 400
Period size: 22 Copynumber: 11.5 Consensus size: 22
1020749 ATTTTAAAAT
1020759 TTTATTTTAAAATATGGATTGA
1 TTTATTTTAAAATATGGATTGA
***
1020781 TTTATTTTAAAATATGGAAAAA
1 TTTATTTTAAAATATGGATTGA
1020803 TTTATTTTAAAATATGGATTGA
1 TTTATTTTAAAATATGGATTGA
*
1020825 TTTATTTTAAAATATGGATAGA
1 TTTATTTTAAAATATGGATTGA
***
1020847 TTTATTTTAAAATATGGAAAAA
1 TTTATTTTAAAATATGGATTGA
*
1020869 TTTATTTTAAAATACGGATTGA
1 TTTATTTTAAAATATGGATTGA
*
1020891 TTTATTTTAAAATATGAATTGA
1 TTTATTTTAAAATATGGATTGA
1020913 TTTATTTTAAAATATGGATTGA
1 TTTATTTTAAAATATGGATTGA
*
1020935 TTTATTTTAAAATATGAATTGA
1 TTTATTTTAAAATATGGATTGA
*
1020957 TTTATTTTAAAATATGAATTGA
1 TTTATTTTAAAATATGGATTGA
*
1020979 TTTATTTTAAAATATAGATTGA
1 TTTATTTTAAAATATGGATTGA
1021001 TTTATTTTAAAA
1 TTTATTTTAAAA
1021013 AAATTTATTA
Statistics
Matches: 213, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 213 1.00
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.48
Consensus pattern (22 bp):
TTTATTTTAAAATATGGATTGA
Found at i:1021094 original size:31 final size:31
Alignment explanation
Indices: 1021037--1021095 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
1021027 TGTTGTATGG
*
1021037 ATTATTTAAATTTCAGTATTATAAAACTAAA
1 ATTATTTAAATTTCAGTATTACAAAACTAAA
*
1021068 ATTATTTAAATTTCAGTATTGCAAAACT
1 ATTATTTAAATTTCAGTATTACAAAACT
1021096 CTTTTAAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.44, C:0.08, G:0.05, T:0.42
Consensus pattern (31 bp):
ATTATTTAAATTTCAGTATTACAAAACTAAA
Found at i:1025621 original size:23 final size:23
Alignment explanation
Indices: 1025595--1025640 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
1025585 GTGCTCGATA
1025595 AACTTGATTATATAGAACTATCC
1 AACTTGATTATATAGAACTATCC
* *
1025618 AACTTGCTTTTATAGAACTATCC
1 AACTTGATTATATAGAACTATCC
1025641 TTATAAACCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.35, C:0.20, G:0.09, T:0.37
Consensus pattern (23 bp):
AACTTGATTATATAGAACTATCC
Found at i:1028321 original size:21 final size:22
Alignment explanation
Indices: 1028275--1028321 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
1028265 TTTAAATTGA
*
1028275 TTAAATATTAATTTATAAAGAT
1 TTAAATATTAATTTATAAAAAT
**
1028297 TTAAATATTTTTTTA-AAAAAT
1 TTAAATATTAATTTATAAAAAT
1028318 TTAA
1 TTAA
1028322 TTTATTAAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (22 bp):
TTAAATATTAATTTATAAAAAT
Found at i:1031353 original size:2 final size:2
Alignment explanation
Indices: 1031346--1031374 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
1031336 ATGTATTTGA
1031346 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1031375 GTGTGTGTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1031461 original size:21 final size:21
Alignment explanation
Indices: 1031437--1031486 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
1031427 GAATTTTGTA
*
1031437 GGGATATTAGAAGAGTGATTT
1 GGGATATTAGAAGAATGATTT
*
1031458 GGGATATTGGAAGAATGATTT
1 GGGATATTAGAAGAATGATTT
1031479 GGGATATT
1 GGGATATT
1031487 TCAGTTTTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.32, C:0.00, G:0.34, T:0.34
Consensus pattern (21 bp):
GGGATATTAGAAGAATGATTT
Found at i:1032693 original size:23 final size:23
Alignment explanation
Indices: 1032639--1032764 Score: 130
Period size: 23 Copynumber: 5.5 Consensus size: 23
1032629 TTCTGAACCA
*
1032639 TTCTACTTCTTCCATAAACAT-T
1 TTCTTCTTCTTCCATAAACATAT
* *
1032661 TT-TTCTTCTTCCATAAACTTGT
1 TTCTTCTTCTTCCATAAACATAT
* * *
1032683 TTCTTCTTCTTACATAAACTTGT
1 TTCTTCTTCTTCCATAAACATAT
* *
1032706 TTCTTCTTTTTCCATAAACACAT
1 TTCTTCTTCTTCCATAAACATAT
* *
1032729 TTCTTTTTTCTTCCATAAACCTAT
1 TTC-TTCTTCTTCCATAAACATAT
*
1032753 TTCTCCTTCTTC
1 TTCTTCTTCTTC
1032765 AATTCATCTG
Statistics
Matches: 87, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
21 16 0.18
22 5 0.06
23 47 0.54
24 19 0.22
ACGTcount: A:0.21, C:0.26, G:0.02, T:0.52
Consensus pattern (23 bp):
TTCTTCTTCTTCCATAAACATAT
Found at i:1032805 original size:49 final size:49
Alignment explanation
Indices: 1032751--1032844 Score: 118
Period size: 49 Copynumber: 1.9 Consensus size: 49
1032741 CCATAAACCT
* *
1032751 ATTTCTCCTTCTTCAATTCATCTGA-AAGAAAAAGTAGTGAGAAAATAAG
1 ATTTCTCCTTCTTCAATTCATCTCAGAA-AAAAAGTAGTAAGAAAATAAG
* * **
1032800 ATTTCTTCTTCTTCCATTTGTCTCAGAAAAAAAGTAGTAAGAAAA
1 ATTTCTCCTTCTTCAATTCATCTCAGAAAAAAAGTAGTAAGAAAA
1032845 ATGAGCAAAG
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
49 36 0.95
50 2 0.05
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33
Consensus pattern (49 bp):
ATTTCTCCTTCTTCAATTCATCTCAGAAAAAAAGTAGTAAGAAAATAAG
Found at i:1038597 original size:11 final size:11
Alignment explanation
Indices: 1038581--1038608 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
1038571 GAGGGCGTTC
1038581 AAATGGAATTT
1 AAATGGAATTT
1038592 AAATGGAATTT
1 AAATGGAATTT
1038603 AAATGG
1 AAATGG
1038609 TTGATCGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.21, T:0.32
Consensus pattern (11 bp):
AAATGGAATTT
Done.