genome.fa.s7848.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007848.1 Hibiscus syriacus cultivar Beakdansim tig00110205_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84188

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6748--6821	38	1.9	38	88	0	112	43	20	14	21	1.88
9974--10008	18	1.9	18	94	0	61	37	17	8	37	1.80
10335--10390	29	1.9	29	85	0	76	39	5	19	35	1.75
12023--12077	26	2.1	26	83	10	67	9	29	0	61	1.26
12840--12879	14	3.1	14	80	20	52	70	0	30	0	0.88
20207--20253	24	2.0	24	82	0	58	38	17	29	14	1.89
22824--22865	21	2.0	20	86	4	57	28	2	2	66	1.16
30444--30519	23	3.4	22	75	12	73	30	1	18	50	1.55
31181--31255	32	2.3	32	97	0	141	46	5	8	40	1.56
36071--36116	24	1.9	24	91	8	76	4	10	21	63	1.44
36426--36477	20	2.6	20	96	0	95	38	26	13	21	1.90
36467--36565	21	4.8	20	72	6	72	36	23	19	21	1.95
36532--36725	20	9.6	20	81	5	221	35	25	19	19	1.95
36532--36725	60	3.2	60	83	0	253	35	25	19	19	1.95
37107--37177	33	2.2	33	89	0	106	12	21	18	47	1.81
37298--37352	14	3.6	14	73	21	56	40	23	27	9	1.85
37298--37368	33	2.2	33	92	0	115	42	25	23	8	1.82
37364--37461	19	5.7	19	70	22	81	10	24	22	42	1.84
37386--37475	14	5.7	14	74	23	81	8	25	23	42	1.83
37369--37483	33	3.5	33	95	0	212	9	24	20	45	1.81
39180--39645	185	2.5	186	97	2	876	21	12	19	46	1.83
39180--39645	93	5.1	93	97	2	876	21	12	19	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39689--39817	19	7.3	19	75	17	125	45	28	17	8	1.77
39725--39817	33	2.8	32	91	4	150	46	27	18	7	1.76
39689--39817	52	2.5	52	74	14	140	45	28	17	8	1.77
39813--39946	19	7.6	19	73	18	119	11	19	23	45	1.82
39818--39909	33	2.8	33	95	1	168	10	20	21	46	1.81
41848--41883	14	2.6	14	95	0	63	33	0	22	44	1.53
41990--42091	19	5.6	19	84	13	151	44	17	23	14	1.86
42120--42397	19	15.7	19	80	15	346	14	20	17	47	1.83
42088--42424	141	2.4	137	89	6	511	14	20	18	46	1.84
42120--42397	52	5.2	52	90	6	345	14	20	17	47	1.83
44722--44746	12	2.1	12	100	0	50	0	28	0	72	0.86
44921--44967	24	2.0	24	87	8	69	38	21	14	25	1.92
45636--46004	20	18.5	20	86	4	458	20	18	26	34	1.96
53463--53503	21	2.1	19	86	9	55	19	4	2	73	1.13
54784--54809	7	3.7	7	100	0	52	11	26	15	46	1.80
61279--61346	32	2.1	33	91	2	111	38	22	27	11	1.89
70388--70435	25	1.9	25	82	0	60	22	2	4	70	1.15
70504--70547	22	2.0	22	82	8	54	36	0	0	63	0.95
71015--71058	18	2.4	19	84	3	54	47	0	2	50	1.13
74038--74185	72	2.1	72	92	2	244	31	12	16	39	1.85
74054--74203	72	2.1	72	84	2	194	32	14	14	38	1.86
77935--77979	2	22.5	2	100	0	90	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80076--80342	146	1.8	144	85	4	376	26	23	19	30	1.98

Tables:   1

The End!