Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007851.1 Hibiscus syriacus cultivar Beakdansim tig00110210_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1608033
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 9
Found at i:690381 original size:32 final size:32
Alignment explanation
Indices: 690333--690426 Score: 165
Period size: 32 Copynumber: 3.0 Consensus size: 32
690323 AAAAATTATA
690333 GGCTGTTTTTTG-CTGGTTGTAAGGGGCGTAGG
1 GGCT-TTTTTTGTCTGGTTGTAAGGGGCGTAGG
690365 GGCTTTTTTTGTCTGGTTGTAAGGGGCGTAGG
1 GGCTTTTTTTGTCTGGTTGTAAGGGGCGTAGG
690397 GGCTTTTTTTGTCTGGTTGTAA-GGGCGTAG
1 GGCTTTTTTTGTCTGGTTGTAAGGGGCGTAG
690427 TTGTATTCTT
Statistics
Matches: 61, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
31 15 0.25
32 46 0.75
ACGTcount: A:0.10, C:0.10, G:0.40, T:0.40
Consensus pattern (32 bp):
GGCTTTTTTTGTCTGGTTGTAAGGGGCGTAGG
Found at i:690940 original size:17 final size:17
Alignment explanation
Indices: 690911--690943 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
690901 TGTTATTCAT
690911 TTTAACTTTTTAATTTA
1 TTTAACTTTTTAATTTA
690928 TTTAA-TTTCTTAATTT
1 TTTAACTTT-TTAATTT
690944 GATAGACTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTAACTTTTTAATTTA
Found at i:691211 original size:16 final size:16
Alignment explanation
Indices: 691164--691213 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
691154 TTACGTTAAG
691164 TTATTT-TTTATTCATAT
1 TTATTTGTTTATT--TAT
* *
691181 TTA-TGGTTCATTTAT
1 TTATTTGTTTATTTAT
691196 TTATTTGTTTATTTAT
1 TTATTTGTTTATTTAT
691212 TT
1 TT
691214 TGGATATTTC
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
15 6 0.22
16 13 0.48
17 8 0.30
ACGTcount: A:0.20, C:0.04, G:0.06, T:0.70
Consensus pattern (16 bp):
TTATTTGTTTATTTAT
Found at i:695117 original size:36 final size:36
Alignment explanation
Indices: 695040--695117 Score: 95
Period size: 36 Copynumber: 2.2 Consensus size: 36
695030 AACCTATGAA
*
695040 GGTCATCCAAAGAAAATGACTTAAACTCGCAAAGGG
1 GGTCATCCAAAGAAAATGACTTAAACCCGCAAAGGG
** **
695076 GGTCATCCAAAGAACTTGACTT-AACCCGTGAAGGG
1 GGTCATCCAAAGAAAATGACTTAAACCCGCAAAGGG
695111 GAGTCAT
1 G-GTCAT
695118 TCGGAGCACA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
35 11 0.31
36 25 0.69
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (36 bp):
GGTCATCCAAAGAAAATGACTTAAACCCGCAAAGGG
Found at i:706301 original size:57 final size:56
Alignment explanation
Indices: 706081--706551 Score: 414
Period size: 57 Copynumber: 8.4 Consensus size: 56
706071 CAGGTCTGAG
* * *
706081 TTTTAGAGGTTTCTTGATATGATGTTTTCAAACGAA-TTTGAAAGAATCTAAGCCTAAT
1 TTTTAG-GGTTTCTTG--ATGATTTTTTCAAATGAATTTTGAAAGAAGCTAAGCCTAAT
* *
706139 TTTCAAGGGTTTCTTGATG---TTTTCAAATGAATTTTGAAAGAATCTAAGCCTAAT
1 TTT-TAGGGTTTCTTGATGATTTTTTCAAATGAATTTTGAAAGAAGCTAAGCCTAAT
* * * *
706193 TTTTAGGAGTTTC-T--TGATTTTTTCAAAATGACTTTT--TAGAAACTAAGCCTGAT
1 TTTTAGG-GTTTCTTGATGATTTTTTC-AAATGAATTTTGAAAGAAGCTAAGCCTAAT
*
706246 TTTTAGGAGTTTCTTGATGATTATTTTCAAA-GAATTTTGAAAGAAGCTAAGCCTGAT
1 TTTTAGG-GTTTCTTGATGATT-TTTTCAAATGAATTTTGAAAGAAGCTAAGCCTAAT
* * *
706303 TTTTAAGGGTTTCTTGATGATTATTTCCAAA-GAATTTTGAAAAAAGCTAAGCCTGAT
1 TTTT-AGGGTTTCTTGATGATT-TTTTCAAATGAATTTTGAAAGAAGCTAAGCCTAAT
* * **
706360 TTTTAGGGTTTCTTGATGATTATTTCCAAA-GAACTTTTTTAAAGATTCTAAGCCTAAT
1 TTTTAGGGTTTCTTGATGATT-TTTTCAAATGAA--TTTTGAAAGAAGCTAAGCCTAAT
* *** * *
706418 TTTTAGGGGTTTCTTAATG-TTTTCAAAAATGAATTTT-AAAGAAACTAAGCCTGAT
1 TTTTA-GGGTTTCTTGATGATTTTTTCAAATGAATTTTGAAAGAAGCTAAGCCTAAT
* * * ** *
706473 TTTCAGGTGTTTCTTGATTATTTTTTCCAAA-GATTTTTTTTAAGAGGCTAAGCCTAAT
1 TTTTAGG-GTTTCTTGATGATTTTTT-CAAATGA-ATTTTGAAAGAAGCTAAGCCTAAT
706531 TTTTAGGGGTTTCTTGATGAT
1 TTTTA-GGGTTTCTTGATGAT
706552 AATTGTAAAC
Statistics
Matches: 352, Mismatches: 37, Indels: 48
0.81 0.08 0.11
Matches are distributed among these distances:
51 2 0.01
53 42 0.12
54 38 0.11
55 44 0.12
56 50 0.14
57 87 0.25
58 73 0.21
59 16 0.05
ACGTcount: A:0.30, C:0.10, G:0.17, T:0.43
Consensus pattern (56 bp):
TTTTAGGGTTTCTTGATGATTTTTTCAAATGAATTTTGAAAGAAGCTAAGCCTAAT
Found at i:706466 original size:113 final size:111
Alignment explanation
Indices: 706100--706549 Score: 497
Period size: 113 Copynumber: 4.0 Consensus size: 111
706090 TTTCTTGATA
* * * * *
706100 TGATGTTTTC-AAACGAATTTGAAAGAATCTAAGCCTAATTTTCAAGG-GTTTCTTGATG--T-T
1 TGATGTTTTCAAAATGAATTTTAAAGAAACTAAGCCTGATTTT-TAGGAGTTTCTTGATGATTAT
* *
706160 TT-CAAATGAATTTTGAAAGAATCTAAGCCTAATTTTTAGGAGTTTCT
65 TTCCAAA-GAATTTTGAAAGAAGCTAAGCCTAATTTTTAGGGGTTTCT
* * *
706207 TGATTTTTTCAAAATGACTTTT-TAGAAACTAAGCCTGATTTTTAGGAGTTTCTTGATGATTATT
1 TGATGTTTTCAAAATGAATTTTAAAGAAACTAAGCCTGATTTTTAGGAGTTTCTTGATGATTATT
* * *
706271 TTCAAAGAATTTTGAAAGAAGCTAAGCCTGATTTTTAAGGGTTTCT
66 TCCAAAGAATTTTGAAAGAAGCTAAGCCTAATTTTTAGGGGTTTCT
*
706317 TGATGATTATTTCCAAA-GAATTTTGAAA-AAAGCTAAGCCTGATTTTTAGG-GTTTCTTGATGA
1 TGATG--T-TTTCAAAATGAATTTT-AAAGAAA-CTAAGCCTGATTTTTAGGAGTTTCTTGATGA
* **
706379 TTATTTCCAAAGAACTTTTTTAAAGATTCTAAGCCTAATTTTTAGGGGTTTCT
61 TTATTTCCAAAGAA--TTTTGAAAGAAGCTAAGCCTAATTTTTAGGGGTTTCT
* * * * *
706432 TAATGTTTTCAAAAATGAATTTTAAAGAAACTAAGCCTGATTTTCAGGTGTTTCTTGATTATTTT
1 TGATGTTTTC-AAAATGAATTTTAAAGAAACTAAGCCTGATTTTTAGGAGTTTCTTGATGATTAT
* ** *
706497 TTCCAAAGATTTTTTTTAAGAGGCTAAGCCTAATTTTTAGGGGTTTCT
65 TTCCAAAGA-ATTTTGAAAGAAGCTAAGCCTAATTTTTAGGGGTTTCT
706545 TGATG
1 TGATG
706550 ATAATTGTAA
Statistics
Matches: 292, Mismatches: 32, Indels: 32
0.82 0.09 0.09
Matches are distributed among these distances:
106 3 0.01
107 37 0.13
108 8 0.03
109 1 0.00
110 43 0.15
111 4 0.01
112 11 0.04
113 97 0.33
114 52 0.18
115 36 0.12
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.42
Consensus pattern (111 bp):
TGATGTTTTCAAAATGAATTTTAAAGAAACTAAGCCTGATTTTTAGGAGTTTCTTGATGATTATT
TCCAAAGAATTTTGAAAGAAGCTAAGCCTAATTTTTAGGGGTTTCT
Found at i:719106 original size:31 final size:31
Alignment explanation
Indices: 719068--719155 Score: 124
Period size: 31 Copynumber: 2.8 Consensus size: 31
719058 CATAGTTAAA
*
719068 AGACTAAAA-CTGAACAGATTGATAACGTTAG
1 AGACTAAAATC-GAACGGATTGATAACGTTAG
* *
719099 AGACTAAAATCGATCGGATCGATAACGTTAG
1 AGACTAAAATCGAACGGATTGATAACGTTAG
*
719130 AGACTAAAATCGAATGGATTGATAAC
1 AGACTAAAATCGAACGGATTGATAAC
719156 AATATGGACC
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
31 49 0.98
32 1 0.02
ACGTcount: A:0.43, C:0.14, G:0.20, T:0.23
Consensus pattern (31 bp):
AGACTAAAATCGAACGGATTGATAACGTTAG
Found at i:719310 original size:12 final size:12
Alignment explanation
Indices: 719293--719357 Score: 75
Period size: 12 Copynumber: 5.8 Consensus size: 12
719283 TCAAATAAGG
719293 ATATTTAATATT
1 ATATTTAATATT
719305 ATATTTAATA-T
1 ATATTTAATATT
* **
719316 AAATTT--TGGT
1 ATATTTAATATT
719326 -TATTTAATATT
1 ATATTTAATATT
719337 ATATTTAATATT
1 ATATTTAATATT
719349 ATATTTAAT
1 ATATTTAAT
719358 GTAAATTTAG
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
9 5 0.11
10 1 0.02
11 8 0.18
12 30 0.68
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (12 bp):
ATATTTAATATT
Found at i:719341 original size:44 final size:44
Alignment explanation
Indices: 719293--719376 Score: 141
Period size: 44 Copynumber: 1.9 Consensus size: 44
719283 TCAAATAAGG
* *
719293 ATATTTAATATTATATTTAATATAAATTTTGGTTATTTAATATT
1 ATATTTAATATTATATTTAATATAAATTTAGGATATTTAATATT
*
719337 ATATTTAATATTATATTTAATGTAAATTTAGGATATTTAA
1 ATATTTAATATTATATTTAATATAAATTTAGGATATTTAA
719377 ACCCAACAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (44 bp):
ATATTTAATATTATATTTAATATAAATTTAGGATATTTAATATT
Found at i:719732 original size:50 final size:50
Alignment explanation
Indices: 719642--719772 Score: 151
Period size: 50 Copynumber: 2.6 Consensus size: 50
719632 TTCATACTAC
* * * *
719642 AAAAAATGTAGA-ACTTAACATATATTTACATCGGTTTAAGTGAATAAAAT
1 AAAAAATGT-GACACTTAACACATACTTACACCGGTGTAAGTGAATAAAAT
*
719692 AAAAAAATGTGACACTTAACACAT-CTTACACCGGTGTAAGTGACTAAAAT
1 -AAAAAATGTGACACTTAACACATACTTACACCGGTGTAAGTGAATAAAAT
* * *
719742 ATAAAA-GTGTCATTTAACACATACTTACACC
1 AAAAAATGTGACACTTAACACATACTTACACC
719773 ACTATAAGTA
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
48 14 0.20
49 13 0.19
50 24 0.34
51 19 0.27
ACGTcount: A:0.45, C:0.15, G:0.11, T:0.28
Consensus pattern (50 bp):
AAAAAATGTGACACTTAACACATACTTACACCGGTGTAAGTGAATAAAAT
Found at i:744502 original size:19 final size:21
Alignment explanation
Indices: 744464--744504 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
744454 ATTAATTTTT
744464 AAAAAACCATAAAATTCCAAAA
1 AAAAAACCATAAAA-TCCAAAA
744486 AAAAAACCA-AAAA-CCAAAA
1 AAAAAACCATAAAATCCAAAA
744505 CCCAAAATCA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.32
21 4 0.21
22 9 0.47
ACGTcount: A:0.73, C:0.20, G:0.00, T:0.07
Consensus pattern (21 bp):
AAAAAACCATAAAATCCAAAA
Found at i:744899 original size:13 final size:13
Alignment explanation
Indices: 744883--744916 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
744873 TTTAATAATG
*
744883 TATTTTTATATTA
1 TATTTGTATATTA
744896 TATTTGTATATTA
1 TATTTGTATATTA
*
744909 AATTTGTA
1 TATTTGTA
744917 AGATTGTAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (13 bp):
TATTTGTATATTA
Found at i:745496 original size:2 final size:2
Alignment explanation
Indices: 745489--745550 Score: 124
Period size: 2 Copynumber: 31.0 Consensus size: 2
745479 AATTTCACTA
745489 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
745531 AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT
745551 GACTTGAAAC
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 60 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:748243 original size:21 final size:22
Alignment explanation
Indices: 748219--748271 Score: 65
Period size: 21 Copynumber: 2.4 Consensus size: 22
748209 CGACCCCAAA
748219 TTTCAAATTAAAA-A-AATTATT
1 TTTCAAATTAAAAGATAATTA-T
*
748240 TTTCAAAATAAAAGTATAATTAT
1 TTTCAAATTAAAAG-ATAATTAT
748263 TTTCAAATT
1 TTTCAAATT
748272 TAATTATTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 12 0.44
23 10 0.37
24 5 0.19
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.43
Consensus pattern (22 bp):
TTTCAAATTAAAAGATAATTAT
Found at i:748918 original size:9 final size:9
Alignment explanation
Indices: 748906--748941 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
748896 TTTTAATATT
748906 TTTATTTAA
1 TTTATTTAA
748915 TTTATTTAA
1 TTTATTTAA
*
748924 -GTATTTAA
1 TTTATTTAA
748932 TTTATTTAA
1 TTTATTTAA
748941 T
1 T
748942 ATTTTACTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
8 7 0.29
9 17 0.71
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (9 bp):
TTTATTTAA
Found at i:748947 original size:17 final size:17
Alignment explanation
Indices: 748908--748945 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
748898 TTAATATTTT
748908 TATTTAATTTATTTAAG
1 TATTTAATTTATTTAAG
748925 TATTTAATTTATTTAA-
1 TATTTAATTTATTTAAG
748941 TATTT
1 TATTT
748946 TACTTATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 5 0.24
17 16 0.76
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (17 bp):
TATTTAATTTATTTAAG
Found at i:748952 original size:16 final size:17
Alignment explanation
Indices: 748908--748952 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 17
748898 TTAATATTTT
*
748908 TATTTAATTTATTTAAG
1 TATTTAACTTATTTAAG
*
748925 TATTTAATTTATTTAA-
1 TATTTAACTTATTTAAG
*
748941 TATTTTACTTAT
1 TATTTAACTTAT
748953 ATATTTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
16 10 0.38
17 16 0.62
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (17 bp):
TATTTAACTTATTTAAG
Found at i:748958 original size:29 final size:29
Alignment explanation
Indices: 748881--748958 Score: 72
Period size: 29 Copynumber: 2.7 Consensus size: 29
748871 CTGTTTAAGG
*
748881 TATATTTTATTATATTTTTAATATTTTTA
1 TATATTTTATTATATATTTAATATTTTTA
* *
748910 TTTAATTTATT-TAAGTATTTAAT-TTATTTA
1 TATATTTTATTAT-A-TATTTAATATT-TTTA
748940 -ATATTTTACTTATATATTT
1 TATATTTTA-TTATATATTT
748959 TTTTTTGCAG
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
28 1 0.03
29 23 0.59
30 14 0.36
31 1 0.03
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.65
Consensus pattern (29 bp):
TATATTTTATTATATATTTAATATTTTTA
Found at i:750565 original size:25 final size:27
Alignment explanation
Indices: 750536--750609 Score: 75
Period size: 25 Copynumber: 2.9 Consensus size: 27
750526 ATAGATTTTG
* *
750536 TTTTTTATTCTA-TTTTTATTTAGTAC
1 TTTTTTATTGTACTTTTTATTTAGGAC
*
750562 TTTTTTATTGTAGTTGTTTA-TT-GGAC
1 TTTTTTATTGTACTT-TTTATTTAGGAC
*
750588 -TTTTTATTGTACTTTTTTTTTA
1 TTTTTTATTGTACTTTTTATTTA
750610 TTATTTATCA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
24 3 0.08
25 15 0.38
26 14 0.35
27 4 0.10
28 4 0.10
ACGTcount: A:0.16, C:0.05, G:0.09, T:0.69
Consensus pattern (27 bp):
TTTTTTATTGTACTTTTTATTTAGGAC
Found at i:750595 original size:12 final size:12
Alignment explanation
Indices: 750537--750604 Score: 66
Period size: 12 Copynumber: 5.4 Consensus size: 12
750527 TAGATTTTGT
*
750537 TTTTTATTCTA-
1 TTTTTATTGTAC
750548 TTTTTATTTAGTAC
1 TTTTTA-TT-GTAC
*
750562 TTTTTTATTGTAG
1 -TTTTTATTGTAC
*
750575 TTGTTTATTGGAC
1 TT-TTTATTGTAC
750588 TTTTTATTGTAC
1 TTTTTATTGTAC
750600 TTTTT
1 TTTTT
750605 TTTTATTATT
Statistics
Matches: 47, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
11 6 0.13
12 18 0.38
13 15 0.32
14 2 0.04
15 6 0.13
ACGTcount: A:0.16, C:0.06, G:0.10, T:0.68
Consensus pattern (12 bp):
TTTTTATTGTAC
Found at i:779088 original size:14 final size:14
Alignment explanation
Indices: 779050--779081 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
779040 AATTCATCTT
779050 TTCTATTAAATATA
1 TTCTATTAAATATA
779064 TTCTATTAAATATA
1 TTCTATTAAATATA
779078 TTCT
1 TTCT
779082 TCTAAATTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (14 bp):
TTCTATTAAATATA
Found at i:780468 original size:26 final size:26
Alignment explanation
Indices: 780439--780497 Score: 118
Period size: 26 Copynumber: 2.3 Consensus size: 26
780429 ATTGGGATGA
780439 TGAAGCAGAAAAAGCTTTTATGAAAT
1 TGAAGCAGAAAAAGCTTTTATGAAAT
780465 TGAAGCAGAAAAAGCTTTTATGAAAT
1 TGAAGCAGAAAAAGCTTTTATGAAAT
780491 TGAAGCA
1 TGAAGCA
780498 AGCTATGTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.46, C:0.08, G:0.20, T:0.25
Consensus pattern (26 bp):
TGAAGCAGAAAAAGCTTTTATGAAAT
Found at i:782719 original size:21 final size:22
Alignment explanation
Indices: 782694--782748 Score: 94
Period size: 22 Copynumber: 2.5 Consensus size: 22
782684 AAACCATTCA
*
782694 GGGGGAATCGGTATCCCCTTGG
1 GGGGGAATCGGTACCCCCTTGG
782716 GGGGGAATCGGTACCCCCTT-G
1 GGGGGAATCGGTACCCCCTTGG
782737 GGGGGAATCGGT
1 GGGGGAATCGGT
782749 TCCTCTAGAC
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
21 13 0.41
22 19 0.59
ACGTcount: A:0.15, C:0.22, G:0.44, T:0.20
Consensus pattern (22 bp):
GGGGGAATCGGTACCCCCTTGG
Found at i:784672 original size:229 final size:228
Alignment explanation
Indices: 784272--784766 Score: 911
Period size: 229 Copynumber: 2.2 Consensus size: 228
784262 GTTATATTGT
* * *
784272 AAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAATATATTTATTATTA
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTA
* *
784337 TCTTTGGTTAATATTTTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAA
66 TATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAA
784402 TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAA-ACTATTAA
131 TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-A
784466 AAAAAATTGAAACATAAATTACATAACTTTAAAA
195 AAAAAATTGAAACATAAATTACATAACTTTAAAA
*
784500 AAAGTATATATCATTTTTATAAAAGTGTACATACTTATTTCACTGTGGAAAACATATTTATTATT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGT-GAAAACATATTTATTATT
784565 ATATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAA
65 ATATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAA
784630 ATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTA
130 ATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTA
784695 AAAAAATTGAAACATAAATTACATAACTTTAAAA
195 AAAAAATTGAAACATAAATTACATAACTTTAAAA
784729 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTAT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTAT
784767 AAAAGTAGGT
Statistics
Matches: 258, Mismatches: 7, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
228 43 0.17
229 209 0.81
230 6 0.02
ACGTcount: A:0.45, C:0.08, G:0.08, T:0.40
Consensus pattern (228 bp):
AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTA
TATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAA
TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
AAAAATTGAAACATAAATTACATAACTTTAAAA
Found at i:785078 original size:20 final size:20
Alignment explanation
Indices: 785046--785092 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
785036 CAATATACCA
785046 GGTAAAAATATGATAAAACC
1 GGTAAAAATATGATAAAACC
785066 GGTAACAAA-ATGATAAAACC
1 GGTAA-AAATATGATAAAACC
785086 GGTAAAA
1 GGTAAAA
785093 CGTTACCAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.55, C:0.11, G:0.17, T:0.17
Consensus pattern (20 bp):
GGTAAAAATATGATAAAACC
Found at i:785180 original size:181 final size:182
Alignment explanation
Indices: 784834--785306 Score: 698
Period size: 181 Copynumber: 2.6 Consensus size: 182
784824 GATCCAAATT
* * * *
784834 AAAAATGTGTCGATCCAAAACGATATAACAGGTAAAACTATGACAAAACCGGTATA-GAAATGAT
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTA-ACAAAATGAT
* * * *
784898 AAAACCGGTAAAACGCTACCGGATACATTTAAAGTGTCGGTACTTTAATATAAGAATCGACACTT
65 AAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGAATCGACACTT
* *
784963 CGTGAATTTAAAACAGAAGCAGTTTTAAATCCTATAAAGTGTCGATACTTTTA
130 CGTGAATTTAAAACAGAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTTTAA
* *
785016 AAAAATGTATCGATCCAAAACAATATACCAGGTAAAAATATGATAAAACCGGTAACAAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTAACAAAATGATA
* * * *
785081 AAACCGGTAAAACGTTACCAGATATATTGAAAGTGTCGATACTTT-ATATAAGGATCGACACTTT
66 AAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGAATCGACACTTC
* ** *
785145 GTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAATGTGTCGATACTTTAA
131 GTGAATTTAAAACAGAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTTTAA
* * *
785197 AAAAATATATCGATCCACAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTAACAAAATGATA
* *
785262 AAACAGGTAAAATGATACCGGATATATTGAAAGTGTCGATACTTT
66 AAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTT
785307 CGTAAGTACG
Statistics
Matches: 262, Mismatches: 28, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
181 165 0.63
182 97 0.37
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.26
Consensus pattern (182 bp):
AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTAACAAAATGATA
AAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGAATCGACACTTC
GTGAATTTAAAACAGAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTTTAA
Found at i:785250 original size:20 final size:19
Alignment explanation
Indices: 785218--785273 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
785208 GATCCACAAC
*
785218 GATATAACAGGTAAAAATAT
1 GATAAAACAGGTAAAAA-AT
* *
785238 GATAAAACCGGTATCAAAAT
1 GATAAAACAGGTA-AAAAAT
785258 GATAAAACAGGTAAAA
1 GATAAAACAGGTAAAA
785274 TGATACCGGA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
19 2 0.07
20 25 0.83
21 3 0.10
ACGTcount: A:0.55, C:0.09, G:0.16, T:0.20
Consensus pattern (19 bp):
GATAAAACAGGTAAAAAAT
Found at i:787520 original size:21 final size:21
Alignment explanation
Indices: 787494--787558 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
787484 AAGACAATCA
*
787494 AGAGTCGAAGAGAAACTTGAT
1 AGAGTCGAAGAGAAACTTGAG
787515 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
* *
787536 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
787557 AG
1 AG
787559 GCATAAGGGG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.42, C:0.11, G:0.31, T:0.17
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:787634 original size:33 final size:33
Alignment explanation
Indices: 787592--787657 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
787582 AAATAGATGG
*
787592 AGTGGTGAAAGAAGTAGAGATGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGATGTTAAGGGGTGA
* * *
787625 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGATGTTAAGGGGTGA
787658 TATTAAGATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.30, C:0.00, G:0.47, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGATGTTAAGGGGTGA
Found at i:789494 original size:19 final size:19
Alignment explanation
Indices: 789448--789496 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
789438 AATGTAGGGT
*
789448 TAATTTTGAATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
789467 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
789486 TAATTTTGTAT
1 TAATTTTGTAT
789497 GTGAATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.35, C:0.02, G:0.10, T:0.53
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:789947 original size:200 final size:200
Alignment explanation
Indices: 789589--791956 Score: 4473
Period size: 200 Copynumber: 11.9 Consensus size: 200
789579 ATACACATTA
*
789589 AGGGTGCAACCATAAAGTGTCGAACCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
789654 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
*
789719 TATGTCTAAA-ATATG-GATCGATACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAAT
131 TATGTCTAAATA-ATGTG-TCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAAT
789782 GGAAAAC
194 GGAAAAC
* *
789789 AGGGTGCAACCATAAAGTGTCAATCCATATATAAAAAGTGTCGATCCCAAAAACATCAAAAACCA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
*
789854 AAAGTATAATGTAATATGTAATTTTTCAATCTAACTGGTACAAGTATACCGGTTTTATGAGAGAA
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
789919 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
131 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
789984 AAAAC
196 AAAAC
789989 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
*
790054 AAAGTATAATGTAATATGTAGTTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
790119 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
131 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
790184 AAAAC
196 AAAAC
790189 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
*
790254 AAAGTATAATGTAATATGTAGTTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
*
790319 TATGTCTAAATAATGTGTCGACACCTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
131 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
790384 AAAAC
196 AAAAC
790389 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
790454 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
790519 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
131 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
790584 AAAAC
196 AAAAC
790589 AGGGTGCAACCATAAAGTGTCGAT-C-TATAT-AAAAGTGTCGATCCC-AAAACATCGAAAACCA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
*
790650 AAAGTATAATGTAATATGTAATTTTTCAATATAACCGGTACAAGTATACCGGTTTTATGAGAGAA
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
790715 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
131 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
790780 AAAAC
196 AAAAC
*
790785 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAACGTGTCGATCCCAAAAACATCGAAAACCA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
* *
790850 AAAGTATAATGTAATATGTAGTTTTTCAATCTAACCAGTACAAGTATACCGGTTTTATGAGAGAA
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
* *
790915 TATGTCTAAATAATGTATCGACACCTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
131 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
790980 AAAAC
196 AAAAC
790985 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
*
791050 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAT
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
791115 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
131 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
791180 AAAAC
196 AAAAC
791185 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
791250 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
791315 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
131 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
791380 AAAAC
196 AAAAC
*
791385 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAACGTGTCGATCCCAAAAACATCGAAAACCA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
791450 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
* *
791515 TATGTCTAAATAATATGTCGACACCTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
131 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
791580 AAAAC
196 AAAAC
791585 AGGGTGCAACCATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCC-AAAACATCGAAAACCA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
791648 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
*
791713 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATAATTTTGGTCCAGAATGAATGG
131 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
791778 AAAAC
196 AAAAC
* *
791783 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCAATCCTAAAAACATCGAAAACCA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
791848 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
791913 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATA
131 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATA
791957 CTAATTTAAA
Statistics
Matches: 2125, Mismatches: 35, Indels: 16
0.98 0.02 0.01
Matches are distributed among these distances:
196 174 0.08
197 16 0.01
198 190 0.09
199 42 0.02
200 1701 0.80
201 2 0.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (200 bp):
AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
AAAAC
Found at i:791570 original size:996 final size:997
Alignment explanation
Indices: 789589--791956 Score: 4472
Period size: 996 Copynumber: 2.4 Consensus size: 997
789579 ATACACATTA
*
789589 AGGGTGCAACCATAAAGTGTCGAACCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
1 AGGGTGCAACCATAAAGTGTCG-ATCATATAT-AAAAGTGTCGATCCC-AAAACATCGAAAACCA
789654 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
63 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
*
789719 TATGTCTAAA-ATATG-GATCGATACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAAT
128 TATGTCTAAATA-ATGTG-TCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAAT
* *
789782 GGAAAACAGGGTGCAACCATAAAGTGTCAATCCATATATAAAAAGTGTCGATCCCAAAAACATCA
191 GGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCG
*
789847 AAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACTGGTACAAGTATACCGGTTTTAT
256 AAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTAT
789912 GAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAA
321 GAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAA
789977 TGAATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAA
386 TGAATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAA
*
790042 CATCGAAAACCAAAAGTATAATGTAATATGTAGTTTTTCAATCTAACCGGTACAAGTATACCGGT
451 CATCGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGT
790107 TTTATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTC
516 TTTATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTC
790172 CAGAATGAATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCC
581 CAGAATGAATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCC
*
790237 AAAAACATCGAAAACCAAAAGTATAATGTAATATGTAGTTTTTCAATCTAACCGGTACAAGTATA
646 AAAAACATCGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATA
790302 CCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACCTTTTTAGTTTGTGTCGATATTTT
711 CCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACCTTTTTAGTTTGTGTCGATATTTT
790367 TGGTCCAGAATGAATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCG
776 TGGTCCAGAATGAATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCG
790432 ATCCCAAAAACATCGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAA
841 ATCCCAAAAACATCGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAA
* *
790497 GTATACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGAT
906 GTATACCGGTTTTATGAGAGAATATGTCTAAATAATATGTCGACACCTTTTTAGTTTGTGTCGAT
790562 ATTTTTGGTCCAGAATGAATGGAAAAC
971 ATTTTTGGTCCAGAATGAATGGAAAAC
790589 AGGGTGCAACCATAAAGTGTCGATC-TATATAAAAGTGTCGATCCCAAAACATCGAAAACCAAAA
1 AGGGTGCAACCATAAAGTGTCGATCATATATAAAAGTGTCGATCCCAAAACATCGAAAACCAAAA
*
790653 GTATAATGTAATATGTAATTTTTCAATATAACCGGTACAAGTATACCGGTTTTATGAGAGAATAT
66 GTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAATAT
790718 GTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGAAA
131 GTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGAAA
*
790783 ACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAACGTGTCGATCCCAAAAACATCGAAAAC
196 ACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAAC
* *
790848 CAAAAGTATAATGTAATATGTAGTTTTTCAATCTAACCAGTACAAGTATACCGGTTTTATGAGAG
261 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
* *
790913 AATATGTCTAAATAATGTATCGACACCTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAAT
326 AATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAAT
790978 GGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCG
391 GGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCG
791043 AAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTAT
456 AAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTAT
*
791108 GAGAGATTATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAA
521 GAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAA
791173 TGAATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAA
586 TGAATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAA
791238 CATCGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGT
651 CATCGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGT
*
791303 TTTATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTC
716 TTTATGAGAGAATATGTCTAAATAATGTGTCGACACCTTTTTAGTTTGTGTCGATATTTTTGGTC
*
791368 CAGAATGAATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAACGTGTCGATCCC
781 CAGAATGAATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCC
791433 AAAAACATCGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATA
846 AAAAACATCGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATA
791498 CCGGTTTTATGAGAGAATATGTCTAAATAATATGTCGACACCTTTTTAGTTTGTGTCGATATTTT
911 CCGGTTTTATGAGAGAATATGTCTAAATAATATGTCGACACCTTTTTAGTTTGTGTCGATATTTT
791563 TGGTCCAGAATGAATGGAAAAC
976 TGGTCCAGAATGAATGGAAAAC
791585 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAGTGTCGATCCCAAAACATCGAAAACCAAA
1 AGGGTGCAACCATAAAGTGTCGAT-CATATATAAAAGTGTCGATCCCAAAACATCGAAAACCAAA
791650 AGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAATA
65 AGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAATA
*
791715 TGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATAATTTTGGTCCAGAATGAATGGAA
130 TGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGAA
* *
791780 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCAATCCTAAAAACATCGAAAA
195 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAA
791845 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
260 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
791910 GAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATA
325 GAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATA
791957 CTAATTTAAA
Statistics
Matches: 1337, Mismatches: 27, Indels: 10
0.97 0.02 0.01
Matches are distributed among these distances:
996 954 0.71
997 18 0.01
998 341 0.26
999 2 0.00
1000 22 0.02
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (997 bp):
AGGGTGCAACCATAAAGTGTCGATCATATATAAAAGTGTCGATCCCAAAACATCGAAAACCAAAA
GTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAATAT
GTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGAAA
ACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAAC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAAT
GGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCG
AAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTAT
GAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAA
TGAATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAA
CATCGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGT
TTTATGAGAGAATATGTCTAAATAATGTGTCGACACCTTTTTAGTTTGTGTCGATATTTTTGGTC
CAGAATGAATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCC
AAAAACATCGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATA
CCGGTTTTATGAGAGAATATGTCTAAATAATATGTCGACACCTTTTTAGTTTGTGTCGATATTTT
TGGTCCAGAATGAATGGAAAAC
Found at i:793431 original size:6 final size:6
Alignment explanation
Indices: 793420--793501 Score: 74
Period size: 6 Copynumber: 13.7 Consensus size: 6
793410 CAAGCGGTCA
* * * * *
793420 ATGAAG ATGAAG CTGACG ATGAAG ATGACG ATGATG ATGACG ATGAAG
1 ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG
* * * * *
793468 CTGACG ATGAAG ATGATG ATGATG ATGATG ATGA
1 ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGA
793502 TGATCCAAAC
Statistics
Matches: 63, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 63 1.00
ACGTcount: A:0.38, C:0.07, G:0.33, T:0.22
Consensus pattern (6 bp):
ATGAAG
Found at i:793457 original size:3 final size:3
Alignment explanation
Indices: 793437--793505 Score: 75
Period size: 3 Copynumber: 23.0 Consensus size: 3
793427 TGAAGCTGAC
* * * * * * *
793437 GAT GAA GAT GAC GAT GAT GAT GAC GAT GAA GCT GAC GAT GAA GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
793485 GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT
793506 CCAAACAAGT
Statistics
Matches: 52, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.36, C:0.06, G:0.33, T:0.25
Consensus pattern (3 bp):
GAT
Found at i:793472 original size:36 final size:36
Alignment explanation
Indices: 793420--793501 Score: 137
Period size: 36 Copynumber: 2.3 Consensus size: 36
793410 CAAGCGGTCA
793420 ATGAAGATGAAGCTGACGATGAAGATGACGATGATG
1 ATGAAGATGAAGCTGACGATGAAGATGACGATGATG
* *
793456 ATGACGATGAAGCTGACGATGAAGATGATGATGATG
1 ATGAAGATGAAGCTGACGATGAAGATGACGATGATG
*
793492 ATGATGATGA
1 ATGAAGATGA
793502 TGATCCAAAC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 43 1.00
ACGTcount: A:0.38, C:0.07, G:0.33, T:0.22
Consensus pattern (36 bp):
ATGAAGATGAAGCTGACGATGAAGATGACGATGATG
Found at i:793494 original size:18 final size:18
Alignment explanation
Indices: 793420--793501 Score: 92
Period size: 18 Copynumber: 4.6 Consensus size: 18
793410 CAAGCGGTCA
*
793420 ATGAAGATGAAGCTGACG
1 ATGAAGATGAAGATGACG
* *
793438 ATGAAGATGACGATGATG
1 ATGAAGATGAAGATGACG
* *
793456 ATGACGATGAAGCTGACG
1 ATGAAGATGAAGATGACG
* *
793474 ATGAAGATGATGATGATG
1 ATGAAGATGAAGATGACG
*
793492 ATGATGATGA
1 ATGAAGATGA
793502 TGATCCAAAC
Statistics
Matches: 52, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 52 1.00
ACGTcount: A:0.38, C:0.07, G:0.33, T:0.22
Consensus pattern (18 bp):
ATGAAGATGAAGATGACG
Found at i:793505 original size:12 final size:12
Alignment explanation
Indices: 793420--793501 Score: 101
Period size: 12 Copynumber: 6.8 Consensus size: 12
793410 CAAGCGGTCA
*
793420 ATGAAGATGAAG
1 ATGACGATGAAG
*
793432 CTGACGATGAAG
1 ATGACGATGAAG
*
793444 ATGACGATGATG
1 ATGACGATGAAG
793456 ATGACGATGAAG
1 ATGACGATGAAG
*
793468 CTGACGATGAAG
1 ATGACGATGAAG
* *
793480 ATGATGATGATG
1 ATGACGATGAAG
*
793492 ATGATGATGA
1 ATGACGATGA
793502 TGATCCAAAC
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 61 1.00
ACGTcount: A:0.38, C:0.07, G:0.33, T:0.22
Consensus pattern (12 bp):
ATGACGATGAAG
Found at i:795281 original size:180 final size:182
Alignment explanation
Indices: 794703--795475 Score: 1184
Period size: 178 Copynumber: 4.3 Consensus size: 182
794693 CAAAGTTTTC
* * *
794703 ACACTTTTTAATATTGTGTCTGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCATTT
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTT
* *
794768 AAAAAAGTGTCGATTGAAAAAACATCGGAACCCATAAGTATAATGTAATAGATAATTTTGTAATA
66 AAAAAAGTGTCGATT--AAAAACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATA
794833 TAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
129 TAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
* *
794887 ACACTTTCTAATA-T-TGTCTGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCATTT
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTT
794950 AAAAAAGTGTCGATTGAAAAAACATCGGAACCCAGAATTATAA-GTAATAG---ATTTTGTAATA
66 AAAAAAGTGTCGATT--AAAAACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATA
* *
795011 TAACCGATATAAATATATCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
129 TAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
795065 ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATA-CATTG
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATT-
* * *
795129 TCAAAAAGTGTCGACATT-TACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAAT
65 TAAAAAAGTGTCG--ATTAAAAACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAAT
*
795193 ATAA-CGGTATAAATATACCGG-TTTATGAGCGAATAAGTCTACAACCTATATCG
128 ATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
*
795246 ATACTTTCTAATATTGTGTCGGTACTTTA-GTCCAGATTGGAAGAAAAATGTGTCGATA-CATTG
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATT-
* * *
795309 TCAAAAAGTGTCGACATT-TACACATCGGAACCCAGAA-TATAATGTAATAGATAA-TTT-TAAT
65 TAAAAAAGTGTCG--ATTAAAAACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAAT
795370 ATAA-CGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
128 ATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
795424 ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGT
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGT
795476 ATAGATAATT
Statistics
Matches: 562, Mismatches: 16, Indels: 27
0.93 0.03 0.04
Matches are distributed among these distances:
177 25 0.04
178 138 0.25
179 67 0.12
180 131 0.23
181 66 0.12
182 108 0.19
183 15 0.03
184 12 0.02
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.32
Consensus pattern (182 bp):
ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTT
AAAAAAGTGTCGATTAAAAACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATA
ACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
Found at i:795383 original size:359 final size:358
Alignment explanation
Indices: 794703--795475 Score: 1188
Period size: 359 Copynumber: 2.1 Consensus size: 358
794693 CAAAGTTTTC
* * *
794703 ACACTTTTTAATATTGTGTCTGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCATTT
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTT
*
794768 AAAAAAGTGTCGATTGAAAAAACATCGGAACCCATAAGTATAATGTAATAGATAATTTTGTAATA
66 AAAAAAGTGTCGATT--AAAAACATCGGAACCCAGAAGTATAATGTAATAGATAATTTTGTAATA
*
794833 TAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTCTAA
129 TAACCGGTATAAATATACCGGTTTTATGAGCGAATAAGTCTACAACCTATATCGACACTTTCTAA
*
794898 TATTGTCTGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCATTTAAAAAAGTGTCGA
194 TATTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCATTTAAAAAAGTGTCGA
794963 TTGAAAAAACATCGGAACCCAGAATTATAAGTAATAGATTTTGTAATATAACCGATATAAATATA
259 TT--AAAAACATCGGAACCCAGAATTATAAGTAATAGATTTTGTAATATAACCGATATAAATATA
*
795028 TCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
322 CCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
795065 ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATA-CATTG
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATT-
* * * *
795129 TCAAAAAGTGTCGACATT-TACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAAT
65 TAAAAAAGTGTCG--ATTAAAAACATCGGAACCCAGAAGTATAATGTAATAGATAATTTTGTAAT
*
795193 ATAA-CGGTATAAATATACCGG-TTTATGAGCGAATAAGTCTACAACCTATATCGATACTTTCTA
128 ATAACCGGTATAAATATACCGGTTTTATGAGCGAATAAGTCTACAACCTATATCGACACTTTCTA
* *
795256 ATATTGTGTCGGTACTTTA-GTCCAGATTGGAAGAAAAATGTGTCGATA-CATTGTCAAAAAGTG
193 ATA-T-TGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCATT-TAAAAAAGTG
* * *
795319 TCGACATT-TACACATCGGAACCCAGAA-TATAATGTAATAGATAATTT-TAATATAA-CGGTAT
255 TCG--ATTAAAAACATCGGAACCCAGAATTATAA-GTAATAGAT--TTTGTAATATAACCGATAT
795380 AAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
315 AAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
795424 ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGT
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGT
795476 ATAGATAATT
Statistics
Matches: 383, Mismatches: 17, Indels: 25
0.90 0.04 0.06
Matches are distributed among these distances:
358 5 0.01
359 173 0.45
360 66 0.17
361 65 0.17
362 71 0.19
364 3 0.01
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.32
Consensus pattern (358 bp):
ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTT
AAAAAAGTGTCGATTAAAAACATCGGAACCCAGAAGTATAATGTAATAGATAATTTTGTAATATA
ACCGGTATAAATATACCGGTTTTATGAGCGAATAAGTCTACAACCTATATCGACACTTTCTAATA
TTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCATTTAAAAAAGTGTCGATT
AAAAACATCGGAACCCAGAATTATAAGTAATAGATTTTGTAATATAACCGATATAAATATACCGG
TTTTATGAGCGAATAGGTCTACAACCTATATCG
Found at i:795596 original size:125 final size:122
Alignment explanation
Indices: 795349--795600 Score: 461
Period size: 125 Copynumber: 2.0 Consensus size: 122
795339 CCCAGAATAT
795349 AATGTAATAGATAATTTTAATATAACGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACA
1 AATGTAATAGATAATTTTAATATAACGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACA
795414 ACCTATATCGACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAA
66 ACCTATATCGACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAA
795471 AATGT-ATAGATAATTTTATAATAATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTC
1 AATGTAATAGATAA-TTT-TAAT-ATAA-CGGTATAAATATACCGGTTTTATGAGCGAATAGGTC
795535 TACAACCTATATCGACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAA
62 TACAACCTATATCGACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAA
795596 AATGT
1 AATGT
795601 GTCGATACCA
Statistics
Matches: 126, Mismatches: 0, Indels: 5
0.96 0.00 0.04
Matches are distributed among these distances:
121 8 0.06
122 8 0.06
123 4 0.03
124 4 0.03
125 102 0.81
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (122 bp):
AATGTAATAGATAATTTTAATATAACGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACA
ACCTATATCGACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAA
Found at i:795775 original size:305 final size:301
Alignment explanation
Indices: 795170--795778 Score: 1048
Period size: 305 Copynumber: 2.0 Consensus size: 301
795160 CCAGAATTAT
*
795170 AATGTAATAGATAATTTTGTAATATAACGGTATAAATATACCGGTTTATGAGCGAATAAGTCTAC
1 AATGTAATAGATAATTTTATAATATAACGGTATAAATATACCGGTTTATGAGCGAATAAGTCTAC
*
795235 AACCTATATCGATACTTTCTAATATTGTGTCGGTACTTTAGTCCAGATTGGAAGAAAAATGTGTC
66 AACCTATATCGACACTTTCTAATATTGTGTCGGTACTTTAGTCCAGATTGGAAGAAAAATGTGTC
*
795300 GATACATTGTCAAAAAGTGTCGACATTTACACATCGGAACCCAGAATATAATGTAATAGATAATT
131 GATACATTGTAAAAAAGTGTCGACATTTACACATCGGAACCCAGAATATAATGTAATAGATAATT
795365 TTAATATAACGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTT
196 TTAATATAACGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTT
795430 TCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAA
261 TCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAA
*
795471 AATGT-ATAGATAATTTTATAATAATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTC
1 AATGTAATAGATAATTTTATAAT-ATAA-CGGTATAAATATACCGG-TTTATGAGCGAATAAGTC
795535 TACAACCTATATCGACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATG
63 TACAACCTATATCGACACTTTCTAATATTGTGTCGGTACTTTA-GTCCAGATTGGAAGAAAAATG
*
795600 TGTCGATACCATT-TAAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAG
127 TGTCGATA-CATTGTAAAAAAGTGTCGACATTTACACATCGGAACCCAGA-ATATAATGTAATAG
795664 ATAATTTTGTAATATAACCGGTAT-AA-ATACCGGTTTTATGAGCGAATAGGTCTACAACCTATA
190 ATAA-TTT-TAATATAA-CGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATA
*
795727 TCGAC-CTTTCTAATATTGTGTTGGTACTTTATGTCCAGATTGGAAGAAA
252 TCGACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAA
795776 AAT
1 AAT
795779 ATGTCGATAC
Statistics
Matches: 293, Mismatches: 6, Indels: 14
0.94 0.02 0.04
Matches are distributed among these distances:
300 16 0.05
301 9 0.03
302 17 0.06
303 59 0.20
304 64 0.22
305 67 0.23
306 45 0.15
307 10 0.03
308 6 0.02
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.33
Consensus pattern (301 bp):
AATGTAATAGATAATTTTATAATATAACGGTATAAATATACCGGTTTATGAGCGAATAAGTCTAC
AACCTATATCGACACTTTCTAATATTGTGTCGGTACTTTAGTCCAGATTGGAAGAAAAATGTGTC
GATACATTGTAAAAAAGTGTCGACATTTACACATCGGAACCCAGAATATAATGTAATAGATAATT
TTAATATAACGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTT
TCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAA
Found at i:795878 original size:181 final size:183
Alignment explanation
Indices: 795471--795935 Score: 834
Period size: 180 Copynumber: 2.6 Consensus size: 183
795461 TTGGAAGAAA
*
795471 AATGT-ATAGATAATTTTATAATAATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTC
1 AATGTAATAGATAATTTTGTAAT-ATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTC
*
795535 TACAACCTATATCGACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATG
65 TACAACCTATATCGACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATA
795600 TGTCGATACCATTTAAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTAT
130 TGTCGATACCATTTAAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTAT
795654 AATGTAATAGATAATTTTGTAATATAACCGGTAT-AA-ATACCGGTTTTATGAGCGAATAGGTCT
1 AATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCT
*
795717 ACAACCTATATCGAC-CTTTCTAATATTGTGTTGGTACTTTATGTCCAGATTGGAAGAAAAATAT
66 ACAACCTATATCGACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATAT
795781 GTCGATACCATTTAAAAAAGTGTCGACA-TTACACATCGGAACCCAGATTTAT
131 GTCGATACCATTTAAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTAT
795833 AATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCT
1 AATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTC-
795898 TACAACCTATATCGACACGTTT-TAATATTGTGTCGGTA
65 TACAACCTATATCGACAC-TTTCTAATATTGTGTCGGTA
795936 ATTTTAAGTA
Statistics
Matches: 272, Mismatches: 4, Indels: 12
0.94 0.01 0.04
Matches are distributed among these distances:
179 58 0.21
180 77 0.28
181 68 0.25
182 18 0.07
183 32 0.12
184 19 0.07
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.34
Consensus pattern (183 bp):
AATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCT
ACAACCTATATCGACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATAT
GTCGATACCATTTAAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTAT
Found at i:798431 original size:25 final size:25
Alignment explanation
Indices: 798367--798431 Score: 112
Period size: 25 Copynumber: 2.6 Consensus size: 25
798357 TTATCATTAA
*
798367 ATTTAGGTATGCACAATAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
798392 ATTTAGGTATGTACAATAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
*
798417 ATTTAGGTATATACA
1 ATTTAGGTATGTACA
798432 TCTTTTGAGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.35
Consensus pattern (25 bp):
ATTTAGGTATGTACAATAACTACAT
Found at i:798802 original size:22 final size:23
Alignment explanation
Indices: 798777--798839 Score: 92
Period size: 22 Copynumber: 2.8 Consensus size: 23
798767 TAATAGGTAA
*
798777 ATATGATGTAATAGGTAGCG-CT
1 ATATAATGTAATAGGTAGCGTCT
* *
798799 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGTCT
798822 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
798840 TGGTTATTGT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
22 18 0.50
23 18 0.50
ACGTcount: A:0.37, C:0.05, G:0.22, T:0.37
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGTCT
Found at i:798846 original size:23 final size:23
Alignment explanation
Indices: 798777--798846 Score: 81
Period size: 23 Copynumber: 3.1 Consensus size: 23
798767 TAATAGGTAA
* * *
798777 ATATGATGTAATAGGTAG-CGCT
1 ATATAATGTAATAGGTAGTGGTT
*
798799 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGT-GGTT
798822 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGTGGTT
798845 AT
1 AT
798847 TGTAAAGTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
22 16 0.40
23 23 0.57
24 1 0.03
ACGTcount: A:0.34, C:0.04, G:0.23, T:0.39
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGGTT
Found at i:799274 original size:23 final size:23
Alignment explanation
Indices: 799243--799315 Score: 92
Period size: 23 Copynumber: 3.2 Consensus size: 23
799233 ATAGGTAAAA
*
799243 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
799266 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* * *
799289 ATATAATGTAATATGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
799312 ATAT
1 ATAT
799316 TGTAACTATC
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 43 1.00
ACGTcount: A:0.34, C:0.04, G:0.21, T:0.41
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:799666 original size:420 final size:422
Alignment explanation
Indices: 799041--800304 Score: 1993
Period size: 420 Copynumber: 3.0 Consensus size: 422
799031 TCGTTGGTTA
* * *
799041 ATATTGTTAAATT-TAAATTCT-AATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTG
1 ATATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTA
* *
799104 TGTAAATG-AATTATTAAATTAA-ATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAATTGA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTAA
**
799166 AACATAAATTACATAACTTTAAACA-AAACATCGAT-CTTTTTATAAAAAGTATGGACACTTTC-
131 AACATAAATTACATAACTTTAAA-AGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCA
799228 ATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATAT
195 ATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTA-CG-TT-TAT
* * * *
799293 AATGTAATATGTAGTGGTTATATTGT-AACTATCTATC-CTTTATAAAAGTGTCTATACTTTTTT
257 AATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTATAAAAGTGTC-ATAC-TTTTT
* *
799356 TCACGGTAG-AAACATTAATTTAAGGTTATC-TTTGAGTGAGTTTTAAGATATAATTTAGTAATT
320 TCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATAATTTAGTAATT
799419 ATAGG-GTCTAATGA-TTATTTTTCACGTTACGATATAT
385 ATAGGCGTCTAATGATTTATTTTT-ACGTTACGATATAT
799456 ATTATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATC-AATAATTTTT
1 A-TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTT
*
799520 TTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTA
65 ATGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTA
799585 AAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCA
130 AAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCA
*
799650 ATATAATA-GT-AAAATATGATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGCGTTTATAA
195 ATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTA-CGTTTATAA
799713 TGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCATAC-TTTTTC
259 TGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCA-TTTTATAAAAGTGT-CATACTTTTTTC
799777 ACTGTGGAAAACA-TAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATAATTTAGTAATTAT
322 ACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATAATTTAGTAATTAT
799841 AGGCGTCTAATGATTTATTTTTTACGTTACG--ATAT
387 AGGCGTCTAATGATTTA-TTTTTACGTTACGATATAT
*
799876 ATA-T-TT-AA--AAAAATTTTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTA
1 ATATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTA
*
799936 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAAAACTATTAAAAAAAATTAA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTAA
800001 AACATAAATTA-ATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTA-GGACACTTTCAA
131 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
* *
800064 TATAATAGGTAAAAATATGATATAATAGGTAGCGCTTATATAATGTAATAGGTAGGTTTAT-ATG
196 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTACGTTTATAATG
800128 TAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAA--GTCATACTTTTTTCACT
261 TAATAGGTAGTGCTTATATTGTAAAGTATCTATCA-TTTTATAAAAGTGTCATACTTTTTTCACT
800191 GTGGAAAACATTAA-TTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAA-T-TAG
325 GTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATA-TAATTTAGTAATTATAG
800253 GCGTCTAATGATTTATTTTTACGTTACGATATAT
389 GCGTCTAATGATTTATTTTTACGTTACGATATAT
800287 ATATTATTAAATTAAAAA
1 ATATTATTAAATTAAAAA
800305 CAATAAACAT
Statistics
Matches: 797, Mismatches: 21, Indels: 61
0.91 0.02 0.07
Matches are distributed among these distances:
409 13 0.02
410 23 0.03
411 61 0.08
412 15 0.02
413 70 0.09
414 89 0.11
415 127 0.16
416 18 0.02
417 26 0.03
418 72 0.09
419 70 0.09
420 133 0.17
421 55 0.07
422 20 0.03
423 5 0.01
ACGTcount: A:0.41, C:0.08, G:0.12, T:0.39
Consensus pattern (422 bp):
ATATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTA
TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTAA
AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTACGTTTATAATG
TAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTATAAAAGTGTCATACTTTTTTCACTG
TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATAATTTAGTAATTATAGGC
GTCTAATGATTTATTTTTACGTTACGATATAT
Found at i:799689 original size:23 final size:22
Alignment explanation
Indices: 799663--799738 Score: 102
Period size: 23 Copynumber: 3.5 Consensus size: 22
799653 TAATAGTAAA
799663 ATATGATGTAATAGGTAGCGTTT
1 ATAT-ATGTAATAGGTAGCGTTT
799686 ATATAATGTAATAGGTAGCGTTT
1 ATAT-ATGTAATAGGTAGCGTTT
* *
799709 ATA-ATGTAATAGGTAGTGCTT
1 ATATATGTAATAGGTAGCGTTT
799730 ATAT-TGTAA
1 ATATATGTAA
799739 AGTATCTATC
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
21 24 0.49
23 25 0.51
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.39
Consensus pattern (22 bp):
ATATATGTAATAGGTAGCGTTT
Found at i:799713 original size:21 final size:21
Alignment explanation
Indices: 799668--799738 Score: 97
Period size: 21 Copynumber: 3.3 Consensus size: 21
799658 GTAAAATATG
799668 ATGTAATAGGTAGCGTTTATATA
1 ATGTAATAGGTAGCG-TT-TATA
799691 ATGTAATAGGTAGCGTTTATA
1 ATGTAATAGGTAGCGTTTATA
* *
799712 ATGTAATAGGTAGTGCTTATA
1 ATGTAATAGGTAGCGTTTATA
*
799733 TTGTAA
1 ATGTAA
799739 AGTATCTATC
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
21 28 0.62
22 2 0.04
23 15 0.33
ACGTcount: A:0.34, C:0.04, G:0.23, T:0.39
Consensus pattern (21 bp):
ATGTAATAGGTAGCGTTTATA
Found at i:800112 original size:23 final size:21
Alignment explanation
Indices: 800086--800151 Score: 84
Period size: 19 Copynumber: 3.1 Consensus size: 21
800076 AAATATGATA
800086 TAATAGGTAGCGCTTATATAATG
1 TAATAGGTAG-GCTTATAT-ATG
800109 TAATAGGTAGG-TT-TATATG
1 TAATAGGTAGGCTTATATATG
800128 TAATAGGTAGTGCTTATAT-TG
1 TAATAGGTAG-GCTTATATATG
800149 TAA
1 TAA
800152 AGTATCTATC
Statistics
Matches: 40, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
19 13 0.32
20 4 0.10
21 9 0.22
22 4 0.10
23 10 0.25
ACGTcount: A:0.33, C:0.05, G:0.23, T:0.39
Consensus pattern (21 bp):
TAATAGGTAGGCTTATATATG
Found at i:803504 original size:29 final size:26
Alignment explanation
Indices: 803451--803523 Score: 67
Period size: 29 Copynumber: 2.7 Consensus size: 26
803441 AGAAGGGATT
* * *
803451 AGGTTTTTTTAGAAAATAGTCATTTA
1 AGGTTTTTTGAGAAATTAGACATTTA
* *
803477 AGGGGGTTTTTTGAGAAATTAGAGATTTT
1 A---GGTTTTTTGAGAAATTAGACATTTA
803506 AGGTTTTTTGAG-AATTAG
1 AGGTTTTTTGAGAAATTAG
803524 GAATTTTTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
25 6 0.15
26 12 0.31
29 21 0.54
ACGTcount: A:0.30, C:0.01, G:0.25, T:0.44
Consensus pattern (26 bp):
AGGTTTTTTGAGAAATTAGACATTTA
Found at i:814205 original size:42 final size:43
Alignment explanation
Indices: 814000--814218 Score: 149
Period size: 43 Copynumber: 5.1 Consensus size: 43
813990 GCCTAAATGT
* * * *
814000 TAAAAGTAAAAAATGAGATTAAAATAAATTAGAGACATT-AGTTA
1 TAAAAATAAAAAATGAAATTAAAA-AAATTAGAGA-TTTAAATTA
** * * * * * ** *
814044 TAAAGGTAAGAAATGATATTAAAAAAACTATAAACCTCAATTA
1 TAAAAATAAAAAATGAAATTAAAAAAATTAGAGATTTAAATTA
** ** * *
814087 TAAAGGTTGAAAATGAAATTAAAAAAATTAG-GCGTTTCAATTA
1 TAAAAATAAAAAATGAAATTAAAAAAATTAGAG-ATTTAAATTA
* *
814130 TAAAAATAAAAATTGAGATTAAAAAAAATTAGAGAATTT-AATTA
1 TAAAAATAAAAAATGAAATT-AAAAAAATTAGAG-ATTTAAATTA
* *
814174 TAAATATAAAAAATAAAATTAAAAAAA-TAGAGATTTAAATTA
1 TAAAAATAAAAAATGAAATTAAAAAAATTAGAGATTTAAATTA
814216 TAA
1 TAA
814219 GGTAAAAAGT
Statistics
Matches: 139, Mismatches: 31, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
41 4 0.03
42 14 0.10
43 64 0.46
44 53 0.38
45 4 0.03
ACGTcount: A:0.58, C:0.03, G:0.11, T:0.28
Consensus pattern (43 bp):
TAAAAATAAAAAATGAAATTAAAAAAATTAGAGATTTAAATTA
Found at i:816560 original size:64 final size:64
Alignment explanation
Indices: 816492--816650 Score: 214
Period size: 64 Copynumber: 2.5 Consensus size: 64
816482 GAATAAATTG
* * *
816492 AACATCGAATGCATTTTATGCATCGATGCACATACCATGTATCGATACACTC-AGGTT-TTATGA
1 AACATCGAATGCATTTTATGCATCGATGCACAGACCATGCATCGATACACTCGAGCTTGTT-TG-
816555 A
64 A
*
816556 AACATCGAATGCATTTTATGCATCGATGCACAGACCATGCATCGATGCACTCGAGCTTGTTTGA
1 AACATCGAATGCATTTTATGCATCGATGCACAGACCATGCATCGATACACTCGAGCTTGTTTGA
* * * *
816620 AACATTGAATGCACTTCATGCACCGATGCAC
1 AACATCGAATGCATTTTATGCATCGATGCAC
816651 TCTTAGTGCA
Statistics
Matches: 85, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
64 77 0.91
65 6 0.07
66 2 0.02
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (64 bp):
AACATCGAATGCATTTTATGCATCGATGCACAGACCATGCATCGATACACTCGAGCTTGTTTGA
Found at i:816650 original size:17 final size:19
Alignment explanation
Indices: 816628--816670 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
816618 GAAACATTGA
816628 ATGCACT-TCA-TGCACCG
1 ATGCACTCTCAGTGCACCG
*
816645 ATGCACTCTTAGTGCACCG
1 ATGCACTCTCAGTGCACCG
816664 ATGCACT
1 ATGCACT
816671 AAGGGTCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.30
18 2 0.09
19 14 0.61
ACGTcount: A:0.23, C:0.33, G:0.19, T:0.26
Consensus pattern (19 bp):
ATGCACTCTCAGTGCACCG
Found at i:818278 original size:3 final size:3
Alignment explanation
Indices: 818264--818295 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
818254 TTTTACTTTG
818264 ATT ATT -TT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
818296 TAGGAATTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
ATT
Found at i:820712 original size:2 final size:2
Alignment explanation
Indices: 820705--820756 Score: 97
Period size: 2 Copynumber: 26.5 Consensus size: 2
820695 AATTATTATG
820705 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
820747 AT AT A- AT AT A
1 AT AT AT AT AT A
820757 ACAAAGGTAG
Statistics
Matches: 49, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 48 0.98
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:824206 original size:243 final size:240
Alignment explanation
Indices: 823775--824257 Score: 875
Period size: 243 Copynumber: 2.0 Consensus size: 240
823765 TCTATAAATA
823775 CCCAAAGCTTAAGGTCATCTCATCACTGCTTTCACATTCTTTTTCATCTTTCTAATTTCATATTC
1 CCCAAAGCTTAAGGTCATCTCATCACTGCTTTCACATTCTTTTTCATCTTTCTAATTTCATATTC
823840 TTAATTTCATTTCTCGAATCGTTTTCATGGCCAAAACCTCGCTTTAGCTGGTTCCCTTCTCATTG
66 TTAATTTCATTTCTCGAATCGTTTTCATGGCCAAAACCTCGCTTTAGCTGGTTCCCTTCTCATTG
823905 TGTTGTTGTTTGCCAATGGAGTCGCATTTACTAAGGAAAGGCCTTGGCAGCGATCATAAAGCATT
131 TGTTGTTGTTTGCCAATGGAGTCGCATTTACTAAGGAAAGGCCTTGGCAGCGATCATAAAGCATT
823970 AG-C-CGCACAATGTCACTGCATATGACACCGATGATTTCCGACC
196 AGCCGCGCACAATGTCACTGCATATGACACCGATGATTTCCGACC
824013 CCCAAAGCTTAAGGTCATCTCATCACTGCTTTCACATTC-TTTTCATCTTTCTAATTTCATATTC
1 CCCAAAGCTTAAGGTCATCTCATCACTGCTTTCACATTCTTTTTCATCTTTCTAATTTCATATTC
824077 TTAATTTTCATTTCTCGAATCGTTTTCATGGCCAAAAAACAACCTCGCTTTAGCTGGTTCCCTTC
66 TTAA-TTTCATTTCTCGAATCGTTTTCATGGCC----AA-AACCTCGCTTTAGCTGGTTCCCTTC
824142 TCATTGTGTTGTTGTTTGCCAATGGAGTCGCA-TTACTAAGGAAAGGCCTTTGGCAGCGATCATA
125 TCATTGTGTTGTTGTTTGCCAATGGAGTCGCATTTACTAAGGAAAGGCC-TTGGCAGCGATCATA
824206 AAGCATTAGCCGCGCACAATGTCACTGCATATGACACCGATGATTTCCGACC
189 AAGCATTAGCCGCGCACAATGTCACTGCATATGACACCGATGATTTCCGACC
824258 GACAACTCCC
Statistics
Matches: 236, Mismatches: 0, Indels: 11
0.96 0.00 0.04
Matches are distributed among these distances:
237 29 0.12
238 67 0.28
242 18 0.08
243 81 0.34
244 1 0.00
245 40 0.17
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (240 bp):
CCCAAAGCTTAAGGTCATCTCATCACTGCTTTCACATTCTTTTTCATCTTTCTAATTTCATATTC
TTAATTTCATTTCTCGAATCGTTTTCATGGCCAAAACCTCGCTTTAGCTGGTTCCCTTCTCATTG
TGTTGTTGTTTGCCAATGGAGTCGCATTTACTAAGGAAAGGCCTTGGCAGCGATCATAAAGCATT
AGCCGCGCACAATGTCACTGCATATGACACCGATGATTTCCGACC
Found at i:826673 original size:109 final size:107
Alignment explanation
Indices: 826542--826757 Score: 414
Period size: 109 Copynumber: 2.0 Consensus size: 107
826532 AAAAAACTTT
826542 CCATGGGGAGGCTGAGGGGTATCGTAGAAACGAAAACCTTTAGCAACGGCAGCCAACCTTGTTCT
1 CCATGGGGAGGCTGAGGGGTATCGTAGAAACGAAAACCTTTAGCAACGGCAGCCAACCTTGTTCT
826607 AACTAGTCTCAAGGGTCGTCGTTTCGAGAAATATAAGCCAAA
66 AACTAGTCTCAAGGGTCGTCGTTTCGAGAAATATAAGCCAAA
826649 CCATGGTGGAGGCTGAGGGGGTATCGTAGAAACGAAAACCTTTAGCAACGGCAGCCAACCTTGTT
1 CCATGG-GGAGGCTGA-GGGGTATCGTAGAAACGAAAACCTTTAGCAACGGCAGCCAACCTTGTT
826714 CTAACTAGTCTCAAGGGTCGTCGTTTCGAGAAATATAAGCCAAA
64 CTAACTAGTCTCAAGGGTCGTCGTTTCGAGAAATATAAGCCAAA
826758 AGGATTCTTT
Statistics
Matches: 107, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
107 6 0.06
108 9 0.08
109 92 0.86
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.22
Consensus pattern (107 bp):
CCATGGGGAGGCTGAGGGGTATCGTAGAAACGAAAACCTTTAGCAACGGCAGCCAACCTTGTTCT
AACTAGTCTCAAGGGTCGTCGTTTCGAGAAATATAAGCCAAA
Found at i:827260 original size:30 final size:30
Alignment explanation
Indices: 827215--827272 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
827205 GGACTGGCAA
* * *
827215 TGAATCGGCTGAAAACCGGTAAAACCGGGG
1 TGAACCGGCTAAAAACCGGCAAAACCGGGG
827245 TGAACCGGCTAAAAACCGGCAAAACCGG
1 TGAACCGGCTAAAAACCGGCAAAACCGG
827273 TTTGAAACGC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.36, C:0.24, G:0.29, T:0.10
Consensus pattern (30 bp):
TGAACCGGCTAAAAACCGGCAAAACCGGGG
Found at i:828300 original size:21 final size:21
Alignment explanation
Indices: 828274--828451 Score: 148
Period size: 21 Copynumber: 8.6 Consensus size: 21
828264 GCGTTGCATT
*
828274 TCGCGTTGCGATAATTGAAAA
1 TCGCGTTGCGATAGTTGAAAA
828295 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTTGAAAA
* ** **
828316 TCGCGTTGCGAT-TTTCCATT
1 TCGCGTTGCGATAGTTGAAAA
* ** **
828336 TCGCGTTGCGAT-TTTCCAGT
1 TCGCGTTGCGATAGTTGAAAA
* *
828356 TCGCGTTGCGATAGTCT-ACAG
1 TCGCGTTGCGATAGT-TGAAAA
* * **
828377 TTGTCGTTGCGAT-TTTCCAAA
1 TCG-CGTTGCGATAGTTGAAAA
828398 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTTGAAAA
828419 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTTGAAAA
*
828440 TTGCGTTGCGAT
1 TCGCGTTGCGAT
828452 TTTCCAGTTC
Statistics
Matches: 130, Mismatches: 22, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
20 44 0.34
21 76 0.58
22 10 0.08
ACGTcount: A:0.21, C:0.19, G:0.26, T:0.34
Consensus pattern (21 bp):
TCGCGTTGCGATAGTTGAAAA
Found at i:828336 original size:62 final size:62
Alignment explanation
Indices: 828270--828472 Score: 266
Period size: 62 Copynumber: 3.3 Consensus size: 62
828260 ATTCGCGTTG
*
828270 CATTTCGCGTTGCGATAATTGAAAATCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
1 CATTTCGCGTTGCGATAATTGAAAATCGCGTTGCGATAGTTGAAAATTGCGTTGCGATTTTC
* ** ** * *
828332 CATTTCGCGTTGCGAT-TTTCCAGTTCGCGTTGCGATAGTCT-ACAGTTGTCGTTGCGATTTTC
1 CATTTCGCGTTGCGATAATTGAAAATCGCGTTGCGATAGT-TGAAAATTG-CGTTGCGATTTTC
** *
828394 CAAATCGCGTTGCGATAGTTGAAAATCGCGTTGCGATAGTTGAAAATTGCGTTGCGATTTTC
1 CATTTCGCGTTGCGATAATTGAAAATCGCGTTGCGATAGTTGAAAATTGCGTTGCGATTTTC
*
828456 CAGTTCGCGTTGCGATA
1 CATTTCGCGTTGCGATA
828473 GTCTACAGTT
Statistics
Matches: 118, Mismatches: 19, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
61 22 0.19
62 73 0.62
63 23 0.19
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (62 bp):
CATTTCGCGTTGCGATAATTGAAAATCGCGTTGCGATAGTTGAAAATTGCGTTGCGATTTTC
Found at i:828341 original size:20 final size:20
Alignment explanation
Indices: 828316--828499 Score: 122
Period size: 20 Copynumber: 8.9 Consensus size: 20
828306 TAGTTGAAAA
*
828316 TCGCGTTGCGATTTTCCATT
1 TCGCGTTGCGATTTTCCAGT
828336 TCGCGTTGCGATTTTCCAGT
1 TCGCGTTGCGATTTTCCAGT
* *
828356 TCGCGTTGCGATAGTCTACAGT
1 TCGCGTTGCGAT--TTTCCAGT
**
828378 T-GTCGTTGCGATTTTCCAAA
1 TCG-CGTTGCGATTTTCCAGT
* ** **
828398 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGAT-TTTCCAGT
*** *
828419 TCGCGTTGCGATAGTTGAAAAT
1 TCGCGTTGCGAT--TTTCCAGT
828441 T-GCGTTGCGATTTTCCAGT
1 TCGCGTTGCGATTTTCCAGT
* *
828460 TCGCGTTGCGATAGTCTACAGT
1 TCGCGTTGCGAT--TTTCCAGT
828482 T-GTCGTTGCGATTTTCCA
1 TCG-CGTTGCGATTTTCCA
828500 AATTCGTTGC
Statistics
Matches: 131, Mismatches: 23, Indels: 20
0.75 0.13 0.11
Matches are distributed among these distances:
19 5 0.04
20 59 0.45
21 30 0.23
22 37 0.28
ACGTcount: A:0.17, C:0.21, G:0.25, T:0.37
Consensus pattern (20 bp):
TCGCGTTGCGATTTTCCAGT
Found at i:828468 original size:104 final size:103
Alignment explanation
Indices: 828292--828511 Score: 363
Period size: 104 Copynumber: 2.1 Consensus size: 103
828282 CGATAATTGA
*** *
828292 AAATCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCATTTCGCGTTGCGATTTTCCAGTT
1 AAATCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTGAAAATTCGCGTTGCGATTTTCCAGTT
828357 CGCGTTGCGATAGTCTACAGTTGTCGTTGCGATTTTCC
66 CGCGTTGCGATAGTCTACAGTTGTCGTTGCGATTTTCC
828395 AAATCGCGTTGCGATAGTTGAAAATCGCGTTGCGATAGTTGAAAATT-GCGTTGCGATTTTCCAG
1 AAATCGCGTTGCGATAGTTGAAAATCGCGTTGCGAT--TTGAAAATTCGCGTTGCGATTTTCCAG
828459 TTCGCGTTGCGATAGTCTACAGTTGTCGTTGCGATTTTCC
64 TTCGCGTTGCGATAGTCTACAGTTGTCGTTGCGATTTTCC
*
828499 AAAT-TCGTTGCGA
1 AAATCGCGTTGCGA
828512 AAATTCGTTG
Statistics
Matches: 110, Mismatches: 5, Indels: 4
0.92 0.04 0.03
Matches are distributed among these distances:
103 44 0.40
104 61 0.55
105 5 0.05
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.35
Consensus pattern (103 bp):
AAATCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTGAAAATTCGCGTTGCGATTTTCCAGTT
CGCGTTGCGATAGTCTACAGTTGTCGTTGCGATTTTCC
Found at i:828489 original size:42 final size:41
Alignment explanation
Indices: 828295--828499 Score: 141
Period size: 42 Copynumber: 5.0 Consensus size: 41
828285 TAATTGAAAA
* *
828295 TCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCATT
1 TCGCGTTGCGATAGTTGAAAATTGCGTTGCGATTTTCCAGT
*** * * *
828336 TCGCGTTGCGAT--TTTCCAGTTCGCGTTGCGATAGTCTACAGT
1 TCGCGTTGCGATAGTTGAAAATT-GCGTTGCGAT--TTTCCAGT
* ** * * ** **
828378 T-GTCGTTGCGAT-TTTCCAAATCGCGTTGCGATAGTTGAAAA
1 TCG-CGTTGCGATAGTTGAAAATTGCGTTGCGAT-TTTCCAGT
828419 TCGCGTTGCGATAGTTGAAAATTGCGTTGCGATTTTCCAGT
1 TCGCGTTGCGATAGTTGAAAATTGCGTTGCGATTTTCCAGT
* *
828460 TCGCGTTGCGATAGTCT-ACAGTTGTCGTTGCGATTTTCCA
1 TCGCGTTGCGATAGT-TGAAAATTG-CGTTGCGATTTTCCA
828500 AATTCGTTGC
Statistics
Matches: 125, Mismatches: 30, Indels: 17
0.73 0.17 0.10
Matches are distributed among these distances:
39 4 0.03
40 10 0.08
41 48 0.38
42 58 0.46
43 5 0.04
ACGTcount: A:0.19, C:0.20, G:0.25, T:0.36
Consensus pattern (41 bp):
TCGCGTTGCGATAGTTGAAAATTGCGTTGCGATTTTCCAGT
Found at i:828503 original size:62 final size:60
Alignment explanation
Indices: 828273--828511 Score: 203
Period size: 62 Copynumber: 3.9 Consensus size: 60
828263 CGCGTTGCAT
* * * * * * *
828273 TTCGCGTTGCGATAATTGAAAATCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCAT
1 TTCGCGTTGCGATAGTT-ACAGTTGCGTTGCGATA-TTCAAAATTGCGTTGCGATTTTCCAA
* * * * *
828335 TTCGCGTTGCGAT-TTTCCAGTTCGCGTTGCGATAGTCTACAGTTGTCGTTGCGATTTTCCAA
1 TTCGCGTTGCGATAGTTACAGTT-GCGTTGCGATATTC-AAAATTG-CGTTGCGATTTTCCAA
* * * * * *
828397 ATCGCGTTGCGATAGTTGAAAATCGCGTTGCGATAGTTGAAAATTGCGTTGCGATTTTCCAG
1 TTCGCGTTGCGATAGTT-ACAGTTGCGTTGCGATA-TTCAAAATTGCGTTGCGATTTTCCAA
* *
828459 TTCGCGTTGCGATAGTCTACAGTTGTCGTTGCGATTTTCCAAATT-CGTTGCGA
1 TTCGCGTTGCGATAGT-TACAGTTG-CGTTGCGATATTCAAAATTGCGTTGCGA
828512 AAATTCGTTG
Statistics
Matches: 140, Mismatches: 29, Indels: 17
0.75 0.16 0.09
Matches are distributed among these distances:
60 3 0.02
61 25 0.18
62 81 0.58
63 28 0.20
64 3 0.02
ACGTcount: A:0.20, C:0.19, G:0.25, T:0.36
Consensus pattern (60 bp):
TTCGCGTTGCGATAGTTACAGTTGCGTTGCGATATTCAAAATTGCGTTGCGATTTTCCAA
Found at i:828620 original size:6 final size:6
Alignment explanation
Indices: 828609--828641 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
828599 GACACGTATT
828609 ACCACG ACCACG ACCACG ACCACG ACCACG ACC
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACC
828642 CGAGACGAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.33, C:0.52, G:0.15, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:829177 original size:6 final size:6
Alignment explanation
Indices: 829138--829176 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
829128 TCTCGTCTCG
*
829138 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTAGT GGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGT
829177 AATACGTGTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.03, C:0.13, G:0.51, T:0.33
Consensus pattern (6 bp):
GGTCGT
Found at i:829304 original size:22 final size:22
Alignment explanation
Indices: 829275--829325 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
829265 AATTTGGAAA
*
829275 ATCGCAACGACAACTGTAGACT
1 ATCGCAACAACAACTGTAGACT
*
829297 TTCGCAACAACAACTGTAGACT
1 ATCGCAACAACAACTGTAGACT
829319 ATCGCAA
1 ATCGCAA
829326 TGAATTTGGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.37, C:0.27, G:0.16, T:0.20
Consensus pattern (22 bp):
ATCGCAACAACAACTGTAGACT
Found at i:829357 original size:40 final size:40
Alignment explanation
Indices: 829311--829387 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
829301 CAACAACAAC
* *
829311 TGTAGACTATCGCAA-TGAATTTGGAAAATCGCAACGACAT
1 TGTAGACTATCGCAACCGAA-ATGGAAAATCGCAACGACAT
829351 TGTAGACTATCGCAACGCGAAATGGAAAATCGCAACG
1 TGTAGACTATCGCAAC-CGAAATGGAAAATCGCAACG
829388 CGATTTTCAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
40 15 0.45
41 15 0.45
42 3 0.09
ACGTcount: A:0.38, C:0.19, G:0.22, T:0.21
Consensus pattern (40 bp):
TGTAGACTATCGCAACCGAAATGGAAAATCGCAACGACAT
Found at i:829377 original size:41 final size:42
Alignment explanation
Indices: 829311--829411 Score: 122
Period size: 41 Copynumber: 2.5 Consensus size: 42
829301 CAACAACAAC
* *
829311 TGTAGACTATCGCAA--TGAATTTGGAAAATCGCAACGAC-AT
1 TGTAGACTATCGCAACGCGAATATGGAAAATCGCAACG-CGAT
829351 TGTAGACTATCGCAACGCGAA-ATGGAAAATCGCAACGCGAT
1 TGTAGACTATCGCAACGCGAATATGGAAAATCGCAACGCGAT
*
829392 TTTCA-ACTATCGCAACGCGA
1 TGT-AGACTATCGCAACGCGA
829412 TTTTCAACTA
Statistics
Matches: 54, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
40 16 0.30
41 34 0.63
42 4 0.07
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.22
Consensus pattern (42 bp):
TGTAGACTATCGCAACGCGAATATGGAAAATCGCAACGCGAT
Found at i:829405 original size:21 final size:21
Alignment explanation
Indices: 829379--829432 Score: 108
Period size: 21 Copynumber: 2.6 Consensus size: 21
829369 GAAATGGAAA
829379 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGATTTTCAACT
829400 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGATTTTCAACT
829421 ATCGCAACGCGA
1 ATCGCAACGCGA
829433 AATGCAACAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.24
Consensus pattern (21 bp):
ATCGCAACGCGATTTTCAACT
Found at i:829440 original size:21 final size:21
Alignment explanation
Indices: 829356--829440 Score: 91
Period size: 21 Copynumber: 4.1 Consensus size: 21
829346 GACATTGTAG
*
829356 ACTATCGCAACGCGAAATGGA
1 ACTATCGCAACGCGAAATGCA
* ** *
829377 A-AATCGCAACGCGATTTTCA
1 ACTATCGCAACGCGAAATGCA
** *
829397 ACTATCGCAACGCGATTTTCA
1 ACTATCGCAACGCGAAATGCA
829418 ACTATCGCAACGCGAAATGCA
1 ACTATCGCAACGCGAAATGCA
829439 AC
1 AC
829441 ACGAATTTGC
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
20 15 0.28
21 39 0.72
ACGTcount: A:0.35, C:0.27, G:0.18, T:0.20
Consensus pattern (21 bp):
ACTATCGCAACGCGAAATGCA
Found at i:836070 original size:20 final size:18
Alignment explanation
Indices: 836033--836076 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
836023 CCCATTTCTT
836033 AATATTAAAAAATAAATA
1 AATATTAAAAAATAAATA
*
836051 AATATTAATAAAATGTAATA
1 AATATTAA-AAAAT-AAATA
836071 AATATT
1 AATATT
836077 CCTAAAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 8 0.35
19 5 0.22
20 10 0.43
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (18 bp):
AATATTAAAAAATAAATA
Found at i:836102 original size:15 final size:15
Alignment explanation
Indices: 836082--836122 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
836072 ATATTCCTAA
836082 AAAAATAATTTAAAT
1 AAAAATAATTTAAAT
*
836097 AAAAATAAATTAAAT
1 AAAAATAATTTAAAT
* *
836112 ATATATAATTT
1 AAAAATAATTT
836123 TTATAATATT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
AAAAATAATTTAAAT
Found at i:836311 original size:23 final size:22
Alignment explanation
Indices: 836243--836308 Score: 62
Period size: 23 Copynumber: 3.0 Consensus size: 22
836233 ATATGACTTA
*
836243 ATAT-GAAAATAATAATAAAAC
1 ATATCGAAAGTAATAATAAAAC
* * * *
836264 AATAACTAAAGTAACAATTTAAAC
1 -ATATCGAAAGTAATAA-TAAAAC
836288 ATATCGAAAGTAATAATAAAA
1 ATATCGAAAGTAATAATAAAA
836309 ACAAAATAAA
Statistics
Matches: 33, Mismatches: 9, Indels: 4
0.72 0.20 0.09
Matches are distributed among these distances:
22 7 0.21
23 21 0.64
24 5 0.15
ACGTcount: A:0.62, C:0.08, G:0.06, T:0.24
Consensus pattern (22 bp):
ATATCGAAAGTAATAATAAAAC
Found at i:837642 original size:13 final size:12
Alignment explanation
Indices: 837619--837669 Score: 56
Period size: 11 Copynumber: 4.5 Consensus size: 12
837609 ATCTGGCCTG
*
837619 TAATAATATATT
1 TAATAATATATA
837631 TAAT-ATATATA
1 TAATAATATATA
837642 T-ATAATA-ATAA
1 TAATAATATAT-A
837653 TAATAATATA-A
1 TAATAATATATA
837664 TAATAA
1 TAATAA
837670 ACGTAAATGA
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
10 4 0.12
11 19 0.56
12 10 0.29
13 1 0.03
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
TAATAATATATA
Found at i:837661 original size:17 final size:17
Alignment explanation
Indices: 837619--837669 Score: 61
Period size: 17 Copynumber: 3.0 Consensus size: 17
837609 ATCTGGCCTG
*
837619 TAATAATAT-AT-TTAA
1 TAATAATATAATAATAA
837634 TATATATATATAATAATAA
1 TA-ATA-ATATAATAATAA
837653 TAATAATATAATAATAA
1 TAATAATATAATAATAA
837670 ACGTAAATGA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
15 2 0.06
16 3 0.10
17 16 0.52
18 5 0.16
19 5 0.16
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
TAATAATATAATAATAA
Found at i:837992 original size:88 final size:88
Alignment explanation
Indices: 837838--838035 Score: 290
Period size: 88 Copynumber: 2.2 Consensus size: 88
837828 AAGGTCTTAT
*
837838 CATCTTGCACTGTAGGTCTTACAGATGACCCAGAGGATTTAAGATCAAGAACCTTTGAAAATCAG
1 CATCATGCACTGTAGGTCTTACAGATGACCCAGAGGATTTAAGATCAAGAACCTTTGAAAATCAG
*
837903 TTTCTTAAAATCTCATTTGAAAA
66 TTTCTCAAAATCTCATTTGAAAA
* ** * * *
837926 CATCCTGCACTGTAGGTCTTATGGATG-CCCTGAGGTTTTAAGATCATGAAACCTTTGAAAATCA
1 CATCATGCACTGTAGGTCTTACAGATGACCCAGAGGATTTAAGATCAAG-AACCTTTGAAAATCA
*
837990 GTTTCTCAAAATCTTATTTGAAAA
65 GTTTCTCAAAATCTCATTTGAAAA
*
838014 CATCATGCACTGTAGGCCTTAC
1 CATCATGCACTGTAGGTCTTAC
838036 TATAGGTCTT
Statistics
Matches: 98, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
87 18 0.18
88 80 0.82
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.32
Consensus pattern (88 bp):
CATCATGCACTGTAGGTCTTACAGATGACCCAGAGGATTTAAGATCAAGAACCTTTGAAAATCAG
TTTCTCAAAATCTCATTTGAAAA
Found at i:838232 original size:75 final size:76
Alignment explanation
Indices: 838079--838266 Score: 263
Period size: 75 Copynumber: 2.5 Consensus size: 76
838069 ATCTTGCCTC
** * * * *
838079 TAGGTCTTACAGATGACCC-AAGGCTTTGAAAACATCAAAAAGCTCTCGAATGCTTTTTGAAAAT
1 TAGGTCTTATGGATGACCCGAAGGTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAAC
*
838143 ATCCTACACTG
66 ATCATACACTG
* *
838154 TAGGTCTTATGGATGACCCGAAGGTTTTGAAAATATTAAAAAGCTCCCGAAGGCTTTTTG-AAAC
1 TAGGTCTTATGGATGACCCGAAGGTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAAC
*
838218 ATCATGCACTG
66 ATCATACACTG
*
838229 TAGGTCTTATGGATAACCCGAAGGTTTTGAAAACATCA
1 TAGGTCTTATGGATGACCCGAAGGTTTTGAAAACATCA
838267 TGAACTGAAG
Statistics
Matches: 99, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
75 64 0.65
76 35 0.35
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.29
Consensus pattern (76 bp):
TAGGTCTTATGGATGACCCGAAGGTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAAC
ATCATACACTG
Found at i:838292 original size:44 final size:45
Alignment explanation
Indices: 838199--838310 Score: 138
Period size: 44 Copynumber: 2.5 Consensus size: 45
838189 TTAAAAAGCT
* * **
838199 CCCGAAGGCTTTTTG-AAACATCATGCACTGTAGGTCTTATGGATAA
1 CCCGAAGG--TTTTGAAAACATCATGAACTGAAGGTCTTACAGATAA
838245 CCCGAAGGTTTTGAAAACATCATGAACTGAAGGTCTTACAGAT-A
1 CCCGAAGGTTTTGAAAACATCATGAACTGAAGGTCTTACAGATAA
* *
838289 CCCGAAGGCTTTGAAAATATCA
1 CCCGAAGGTTTTGAAAACATCA
838311 GAAAGCTCCC
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
44 26 0.44
45 25 0.42
46 8 0.14
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.27
Consensus pattern (45 bp):
CCCGAAGGTTTTGAAAACATCATGAACTGAAGGTCTTACAGATAA
Found at i:838339 original size:74 final size:73
Alignment explanation
Indices: 838245--838384 Score: 185
Period size: 74 Copynumber: 1.9 Consensus size: 73
838235 TTATGGATAA
* *
838245 CCCGAAGGTTTTGAAAACATCATGAACTG-AAGGTCTTACAGAT-ACCCGAAGGCTTTGAAAATA
1 CCCGAAGGTTTTGAAAACATC-GGAACTGTAA-GTCTTACAGATGACCCGAAGGCTTTGAAAACA
838308 TCAGAAAGCT
64 TCAGAAAGCT
* ** *
838318 CCCGAAGGCTTTTGAAAACATCGGCACTGTAAGTCTTATGGATGACCCGAAGGTTTTGAAAACAT
1 CCCGAAGG-TTTTGAAAACATCGGAACTGTAAGTCTTACAGATGACCCGAAGGCTTTGAAAACAT
838383 CA
65 CA
838385 TGCACTGAAG
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
73 22 0.38
74 36 0.62
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.24
Consensus pattern (73 bp):
CCCGAAGGTTTTGAAAACATCGGAACTGTAAGTCTTACAGATGACCCGAAGGCTTTGAAAACATC
AGAAAGCT
Found at i:838380 original size:118 final size:119
Alignment explanation
Indices: 838133--838501 Score: 505
Period size: 118 Copynumber: 3.1 Consensus size: 119
838123 CTCGAATGCT
* * * ** * *
838133 TTTTGAAAATATCCT-ACACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAAAATATTAAAAAG
1 TTTTGAAAACATCATGA-ACTGAAGGTCTTACAGAT-ACCCGAAGGCTTTGAAAATATCAAAAAG
*
838197 CTCCCGAAGGCTTTTTG-AAACATCATGCACTGTAGGTCTTATGGATAACCCGAAGG
64 CTCCCGAAGGC-TTTTGAAAACATCATGCACTGTAGGTCTTATGGATGACCCGAAGG
*
838253 TTTTGAAAACATCATGAACTGAAGGTCTTACAGATACCCGAAGGCTTTGAAAATATCAGAAAGCT
1 TTTTGAAAACATCATGAACTGAAGGTCTTACAGATACCCGAAGGCTTTGAAAATATCAAAAAGCT
* *
838318 CCCGAAGGCTTTTGAAAACATC-GGCACTGTAAGTCTTATGGATGACCCGAAGG
66 CCCGAAGGCTTTTGAAAACATCATGCACTGTAGGTCTTATGGATGACCCGAAGG
*
838371 TTTTGAAAACATCATGCACTGAAGGTCTTACAG--ACCCGAAGGCTTTGAAAATATCAAAAAGCT
1 TTTTGAAAACATCATGAACTGAAGGTCTTACAGATACCCGAAGGCTTTGAAAATATCAAAAAGCT
* ** * *
838434 CCTGAAGGCTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACTCAAAGG
66 CCCGAAGGCTTTTGAAAACATCATGCACTGTAGGTCTTATGGATGACCCGAAGG
* *
838488 CTTTGAAAATATCA
1 TTTTGAAAACATCA
838502 AAAAGCTCCT
Statistics
Matches: 224, Mismatches: 22, Indels: 9
0.88 0.09 0.04
Matches are distributed among these distances:
116 50 0.22
117 37 0.17
118 65 0.29
119 43 0.19
120 28 0.12
121 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (119 bp):
TTTTGAAAACATCATGAACTGAAGGTCTTACAGATACCCGAAGGCTTTGAAAATATCAAAAAGCT
CCCGAAGGCTTTTGAAAACATCATGCACTGTAGGTCTTATGGATGACCCGAAGG
Found at i:838418 original size:42 final size:44
Alignment explanation
Indices: 838318--838426 Score: 127
Period size: 42 Copynumber: 2.5 Consensus size: 44
838308 TCAGAAAGCT
*
838318 CCCGAAGGCTTTTGAAAACATC-GGCACTGTAAGTCTTATGGATGA
1 CCCGAAGGC-TTTGAAAACATCAGGCACTGTAAGTCTTA-GCATGA
* *
838363 CCCGAAGGTTTTGAAAACATCATGCACTG-AAGGTCTTA-CA-GA
1 CCCGAAGGCTTTGAAAACATCAGGCACTGTAA-GTCTTAGCATGA
*
838405 CCCGAAGGCTTTGAAAATATCA
1 CCCGAAGGCTTTGAAAACATCA
838427 AAAAGCTCCT
Statistics
Matches: 57, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
42 22 0.39
43 1 0.02
44 14 0.25
45 20 0.35
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (44 bp):
CCCGAAGGCTTTGAAAACATCAGGCACTGTAAGTCTTAGCATGA
Found at i:838450 original size:72 final size:74
Alignment explanation
Indices: 838366--838546 Score: 287
Period size: 75 Copynumber: 2.5 Consensus size: 74
838356 TGGATGACCC
* *
838366 GAAGG-TTTTGAAAACATCATGCACTGAAGGTCTTAC-A-GACCCGAAGGCTTTGAAAATATCAA
1 GAAGGCTTTTGAAAACATCATGCACTGTAGGTCTTACAATGACCCAAAGGCTTTGAAAATATCAA
838428 AAAGCTCCT
66 AAAGCTCCT
*
838437 GAAGGCTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACTCAAAGGCTTTGAAAATATCA
1 GAAGGCTTTTGAAAACATCATGCACTGTAGGTCTTACA-ATGACCCAAAGGCTTTGAAAATATCA
838502 AAAAGCTCCT
65 AAAAGCTCCT
*
838512 GAAGGCTTTTAGAAAATATCATGCACTGTAGGTCT
1 GAAGGCTTTT-GAAAACATCATGCACTGTAGGTCT
838547 CTCATGATGT
Statistics
Matches: 101, Mismatches: 4, Indels: 5
0.92 0.04 0.05
Matches are distributed among these distances:
71 5 0.05
72 30 0.30
74 1 0.01
75 42 0.42
76 23 0.23
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (74 bp):
GAAGGCTTTTGAAAACATCATGCACTGTAGGTCTTACAATGACCCAAAGGCTTTGAAAATATCAA
AAAGCTCCT
Found at i:839039 original size:22 final size:22
Alignment explanation
Indices: 839014--839112 Score: 146
Period size: 22 Copynumber: 4.5 Consensus size: 22
839004 AATAAAGCTT
839014 TCATCTTTGAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
*
839036 TCATCTTTGAAGAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
*
839058 TCATCTTT-AAAGAGATAATCTA
1 TCATCTTTGAAA-AGAGAATCTA
* *
839080 TCTTCTTTGAATAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
839102 TCATCTTTGAA
1 TCATCTTTGAA
839113 GAATATAGAT
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
21 2 0.03
22 64 0.94
23 2 0.03
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.36
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:842104 original size:72 final size:72
Alignment explanation
Indices: 841991--842126 Score: 193
Period size: 72 Copynumber: 1.9 Consensus size: 72
841981 GTATAACATA
*
841991 CTAGCTGAATATTATCCATAAAACCAGGGCTACTAACCAATTGCTCTAGAGGGACAACTCAAGCA
1 CTAGCTGAATATTATCCATAAAACCAGGGCGACTAACCAATTGCTCTAGAGGGACAACTCAAGCA
842056 TAACAGG
66 TAACAGG
* * * * * *
842063 CTAGCTGAATATTATCCATAAAGCCAGGGCGA-TCAATCAATTGCTTTAGGGGGATAATTCAAGC
1 CTAGCTGAATATTATCCATAAAACCAGGGCGACT-AACCAATTGCTCTAGAGGGACAACTCAAGC
842127 TTTATTGTAT
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
71 1 0.02
72 55 0.98
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (72 bp):
CTAGCTGAATATTATCCATAAAACCAGGGCGACTAACCAATTGCTCTAGAGGGACAACTCAAGCA
TAACAGG
Found at i:843232 original size:19 final size:19
Alignment explanation
Indices: 843200--843240 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
843190 TGTTGATCAC
*
843200 ATTTTCAATTAATTCTC-A
1 ATTTTCAATAAATTCTCGA
843218 ATTTATCAATAAATTCTCGA
1 ATTT-TCAATAAATTCTCGA
843238 ATT
1 ATT
843241 CCTTCGTCGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 4 0.20
19 12 0.60
20 4 0.20
ACGTcount: A:0.37, C:0.15, G:0.02, T:0.46
Consensus pattern (19 bp):
ATTTTCAATAAATTCTCGA
Found at i:844216 original size:36 final size:34
Alignment explanation
Indices: 844176--844243 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 34
844166 TAAATGCGAA
844176 AATGCATAA-ATGCAAAAATAAGAATGCAAAATGTGC
1 AATGCA-AAGATGCAAAAATAA-AATG-AAAATGTGC
*
844212 AATGCAAAGATGCAAATATAAAATGAAAATGT
1 AATGCAAAGATGCAAAAATAAAATGAAAATGT
844244 AAATGAAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
34 7 0.23
35 6 0.20
36 17 0.57
ACGTcount: A:0.54, C:0.09, G:0.16, T:0.21
Consensus pattern (34 bp):
AATGCAAAGATGCAAAAATAAAATGAAAATGTGC
Found at i:844258 original size:18 final size:19
Alignment explanation
Indices: 844221--844288 Score: 66
Period size: 18 Copynumber: 3.5 Consensus size: 19
844211 CAATGCAAAG
** *
844221 ATGCAAATATAAAATGAAA
1 ATGCAAATGCAAAATAAAA
*
844240 ATGTAAATG-AAAATAAAA
1 ATGCAAATGCAAAATAAAA
844258 ATGCAAATGCAAACATAAAAAA
1 ATGCAAATGCAAA-AT--AAAA
844280 ATGCAAATG
1 ATGCAAATG
844289 TAATGAAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
18 16 0.39
19 10 0.24
20 2 0.05
22 13 0.32
ACGTcount: A:0.62, C:0.07, G:0.12, T:0.19
Consensus pattern (19 bp):
ATGCAAATGCAAAATAAAA
Found at i:847496 original size:2 final size:2
Alignment explanation
Indices: 847491--847528 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
847481 ATTTAAACAA
847491 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
847529 GAAATATGAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:849113 original size:78 final size:79
Alignment explanation
Indices: 849019--849175 Score: 307
Period size: 78 Copynumber: 2.0 Consensus size: 79
849009 TTGTACTTTT
849019 TTTAAATGTTAGTTTTCTTTGAAAAGATTTGTGAAATGTTGGGAGTCGTCACTAATAATTTTTAA
1 TTTAAATGTTAGTTTTCTTTGAAAAGATTTGTGAAATGTTGGGAGTCGTCACTAATAATTTTTAA
849084 ATGCGA-TGGAACA
66 ATGCGATTGGAACA
849097 TTTAAATGTTAGTTTTCTTTGAAAAGATTTGTGAAATGTTGGGAGTCGTCACTAATAATTTTTAA
1 TTTAAATGTTAGTTTTCTTTGAAAAGATTTGTGAAATGTTGGGAGTCGTCACTAATAATTTTTAA
849162 ATGCGATTGGAACA
66 ATGCGATTGGAACA
849176 CCAAAAATAG
Statistics
Matches: 78, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
78 71 0.91
79 7 0.09
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (79 bp):
TTTAAATGTTAGTTTTCTTTGAAAAGATTTGTGAAATGTTGGGAGTCGTCACTAATAATTTTTAA
ATGCGATTGGAACA
Found at i:850653 original size:2 final size:2
Alignment explanation
Indices: 850642--850695 Score: 101
Period size: 2 Copynumber: 27.5 Consensus size: 2
850632 GTAGTTATTA
850642 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
850683 AT AT AT AT AT AT A
1 AT AT AT AT AT AT A
850696 CGGATAAGTA
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 50 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:850717 original size:8 final size:8
Alignment explanation
Indices: 850699--850733 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
850689 ATATATACGG
*
850699 ATAAGTAA
1 ATAATTAA
*
850707 ATAGTTAA
1 ATAATTAA
850715 ATAATTAA
1 ATAATTAA
850723 ATAATTAA
1 ATAATTAA
850731 ATA
1 ATA
850734 TAATAAAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (8 bp):
ATAATTAA
Found at i:863722 original size:20 final size:21
Alignment explanation
Indices: 863699--863739 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
863689 AAAATGAGTG
*
863699 AAAATGAAAAAAAT-AAAAAA
1 AAAATAAAAAAAATGAAAAAA
863719 AAAATAAAAAAAATGAAAAAA
1 AAAATAAAAAAAATGAAAAAA
863740 TGGAAAAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.85, C:0.00, G:0.05, T:0.10
Consensus pattern (21 bp):
AAAATAAAAAAAATGAAAAAA
Found at i:863748 original size:11 final size:10
Alignment explanation
Indices: 863674--863739 Score: 55
Period size: 11 Copynumber: 6.6 Consensus size: 10
863664 GCTTGAAGAA
*
863674 AAAAAAAAAG
1 AAAAAAAATG
863684 AAGAAAAAATG
1 AA-AAAAAATG
***
863695 AGTGAAAATG
1 AAAAAAAATG
*
863705 -AAAAAAATAA
1 AAAAAAAAT-G
863715 AAAAAAAAT-
1 AAAAAAAATG
863724 AAAAAAAATG
1 AAAAAAAATG
863734 AAAAAA
1 AAAAAA
863740 TGGAAAAAAG
Statistics
Matches: 44, Mismatches: 8, Indels: 8
0.73 0.13 0.13
Matches are distributed among these distances:
9 14 0.32
10 14 0.32
11 16 0.36
ACGTcount: A:0.80, C:0.00, G:0.11, T:0.09
Consensus pattern (10 bp):
AAAAAAAATG
Found at i:864808 original size:55 final size:55
Alignment explanation
Indices: 864740--865058 Score: 405
Period size: 55 Copynumber: 5.9 Consensus size: 55
864730 GGTTTCCCAA
* *
864740 CGATCGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGAAGAGG
1 CGATCGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACG
*
864795 CGATCGTTGAAGATTGTTCGAGTCTTATACTCCCTGAAGAAATAGGGGGCAGACG
1 CGATCGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACG
*
864850 CGATCATTGAAGATTGTTCGAG--TT-TACTCTCTGAAGAAATAGGGGGCAGACG
1 CGATCGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACG
* * * * *
864902 CGATCATTGAAGATTGTTCGAGTCTTATACTCTCTGAGGGAATAGGGAGCAGACA
1 CGATCGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACG
* * * * * *
864957 AGATTTGTTGAAGATTGTTTGGGTCTTATACTCTCTGAAGAAATAGGGAGCAGACA
1 CGA-TCGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACG
* * * * *
865013 CGATTGTTGAAGA-TATTCGAGT-TCTATTCTCCCTGAAGAAAGAGGG
1 CGATCGTTGAAGATTGTTCGAGTCT-TATACTCTCTGAAGAAATAGGG
865059 AGCGAACCGG
Statistics
Matches: 236, Mismatches: 23, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
52 49 0.21
53 3 0.01
54 27 0.11
55 109 0.46
56 48 0.20
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (55 bp):
CGATCGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACG
Found at i:864929 original size:107 final size:109
Alignment explanation
Indices: 864739--865061 Score: 411
Period size: 107 Copynumber: 3.0 Consensus size: 109
864729 AGGTTTCCCA
* *
864739 ACGATCGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGAAGAGGCGATCGTTG
1 ACGATCGTTGAAGATTGTTCGAG-CTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTG
*
864804 AAGATTGTTCGAGTCTTATACTCCCTGAAGAAATAGGGGGCAGAC
65 AAGATTGTTCGAGTCTTATACTCCCTGAAGAAATAGGGAGCAGAC
* * *
864849 GCGATCATTGAAGATTGTTCGAG-TT-TACTCTCTGAAGAAATAGGGGGCAGACGCGATCATTGA
1 ACGATCGTTGAAGATTGTTCGAGCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGA
* * *
864912 AGATTGTTCGAGTCTTATACTCTCTGAGGGAATAGGGAGCAGAC
66 AGATTGTTCGAGTCTTATACTCCCTGAAGAAATAGGGAGCAGAC
* * * * * * *
864956 AAGATTTGTTGAAGATTGTTTGGGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTT
1 ACGA-TCGTTGAAGATTGTTCGAG-CTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
* * *
865021 GAAGA-TATTCGAGT-TCTATTCTCCCTGAAGAAAGAGGGAGC
64 GAAGATTGTTCGAGTCT-TATACTCCCTGAAGAAATAGGGAGC
865062 GAACCGGTTA
Statistics
Matches: 183, Mismatches: 25, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
107 77 0.42
108 17 0.09
109 1 0.01
110 51 0.28
111 37 0.20
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (109 bp):
ACGATCGTTGAAGATTGTTCGAGCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGA
AGATTGTTCGAGTCTTATACTCCCTGAAGAAATAGGGAGCAGAC
Found at i:865175 original size:54 final size:54
Alignment explanation
Indices: 865021--865176 Score: 203
Period size: 54 Copynumber: 2.9 Consensus size: 54
865011 CACGATTGTT
*
865021 GAAGA-TATTCGAGTTCTATTCTCCCTGAAGA-AAGAGGGAGCGAA-CCGGTTAGCA
1 GAAGATTATT-GAGTTCTATT-TCCCTGAA-ACAATAGGGAGCGAACCCGGTTAGCA
* *
865075 GAAGATTCTTGAGTTCTATACTCCCTGAAACAATAGGGAGCGAACCCGG-TAGCA
1 GAAGATTATTGAGTTCTAT-TTCCCTGAAACAATAGGGAGCGAACCCGGTTAGCA
*
865129 GAAGATTATTGAGTTCTATGTTCCCTGAAACGATAGGGAGCGAACCCG
1 GAAGATTATTGAGTTCTAT-TTCCCTGAAACAATAGGGAGCGAACCCG
865177 ATGTGAAAAA
Statistics
Matches: 91, Mismatches: 7, Indels: 8
0.86 0.07 0.08
Matches are distributed among these distances:
53 1 0.01
54 83 0.91
55 7 0.08
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (54 bp):
GAAGATTATTGAGTTCTATTTCCCTGAAACAATAGGGAGCGAACCCGGTTAGCA
Found at i:865437 original size:2 final size:2
Alignment explanation
Indices: 865430--865480 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
865420 GTAGTTATTA
865430 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
865472 AT AT AT AT A
1 AT AT AT AT A
865481 CGGATAAGTA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:865505 original size:8 final size:8
Alignment explanation
Indices: 865489--865522 Score: 59
Period size: 8 Copynumber: 4.2 Consensus size: 8
865479 TACGGATAAG
865489 TAATTAAA
1 TAATTAAA
*
865497 TAGTTAAA
1 TAATTAAA
865505 TAATTAAA
1 TAATTAAA
865513 TAATTAAA
1 TAATTAAA
865521 TA
1 TA
865523 TATAAAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (8 bp):
TAATTAAA
Found at i:870166 original size:63 final size:64
Alignment explanation
Indices: 870063--870189 Score: 231
Period size: 63 Copynumber: 2.0 Consensus size: 64
870053 TAATGCTCTC
870063 CAACAATTCAAATATATGGAAATAACGAGGAGCAATAGTTGCAT-GGACATGCAGAAAACAGCAA
1 CAACAATTCAAATATATGGAAATAACGAGGAGCAATAGTTGCATGGGACA-GCAGAAAACAGCAA
870127 CAACAATTCAAATATATGG-AATAACGAGGAGCAATAGTTGCATGGGACAGCAGAAAACAGCAA
1 CAACAATTCAAATATATGGAAATAACGAGGAGCAATAGTTGCATGGGACAGCAGAAAACAGCAA
870190 ACAGATAGCA
Statistics
Matches: 62, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
63 38 0.61
64 24 0.39
ACGTcount: A:0.46, C:0.16, G:0.21, T:0.17
Consensus pattern (64 bp):
CAACAATTCAAATATATGGAAATAACGAGGAGCAATAGTTGCATGGGACAGCAGAAAACAGCAA
Found at i:872011 original size:64 final size:64
Alignment explanation
Indices: 871910--872039 Score: 244
Period size: 64 Copynumber: 2.0 Consensus size: 64
871900 TTTTTATTTT
871910 GTTTTGTTGGATCAATGAATGGGAATGAGTTTTCATAATCTTTCAATTTCGTTTAGTTCTAGTA
1 GTTTTGTTGGATCAATGAATGGGAATGAGTTTTCATAATCTTTCAATTTCGTTTAGTTCTAGTA
871974 GTTTTGTTGGATCAAATGAATGGGAATGAG-TTTCATAATCTTTCAATTTCGTTTAGTTCTAGTA
1 GTTTTGTTGGATC-AATGAATGGGAATGAGTTTTCATAATCTTTCAATTTCGTTTAGTTCTAGTA
872038 GT
1 GT
872040 CTAATATTAA
Statistics
Matches: 65, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
64 49 0.75
65 16 0.25
ACGTcount: A:0.25, C:0.09, G:0.21, T:0.45
Consensus pattern (64 bp):
GTTTTGTTGGATCAATGAATGGGAATGAGTTTTCATAATCTTTCAATTTCGTTTAGTTCTAGTA
Found at i:878396 original size:20 final size:20
Alignment explanation
Indices: 878302--878710 Score: 486
Period size: 20 Copynumber: 20.4 Consensus size: 20
878292 GATTTTCCAT
* ** *
878302 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGTATCCGTA
* *
878322 AATCGCAACGCG-AACACATA
1 AATCGCAACGCGTATC-CGTA
878342 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
878362 AATCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
**
878382 AATCGCAACGCGTATGGGTA
1 AATCGCAACGCGTATCCGTA
*
878402 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
878422 TATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
878442 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
* *
878462 AACCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
878482 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
878502 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
878522 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
878542 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
878562 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
878582 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
878602 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
878622 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
878642 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
878662 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
878682 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
878702 AATCACAAC
1 AATCGCAAC
878711 ACTGAAATTT
Statistics
Matches: 337, Mismatches: 42, Indels: 20
0.84 0.11 0.05
Matches are distributed among these distances:
19 3 0.01
20 331 0.98
21 3 0.01
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (20 bp):
AATCGCAACGCGTATCCGTA
Found at i:879614 original size:13 final size:13
Alignment explanation
Indices: 879596--879620 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
879586 ATATAATCCT
879596 GAAGAAGAAAAAA
1 GAAGAAGAAAAAA
879609 GAAGAAGAAAAA
1 GAAGAAGAAAAA
879621 GTCCCCGAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (13 bp):
GAAGAAGAAAAAA
Found at i:882004 original size:19 final size:19
Alignment explanation
Indices: 881941--882237 Score: 393
Period size: 19 Copynumber: 16.7 Consensus size: 19
881931 AAATCCCAAC
881941 ATGAAAATCGCAATGCGGAA
1 ATGAAAATCGCAATGC-GAA
881961 ATGAAAATCGCAA--CG--
1 ATGAAAATCGCAATGCGAA
*
881976 A-GAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAA
881994 ATGAAAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAA
882013 ATGAAAATCGCAA--CG--
1 ATGAAAATCGCAATGCGAA
*
882028 A-GAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAA
882046 ATGAAAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAA
882065 ATGAAAATCGCAA--CG--
1 ATGAAAATCGCAATGCGAA
*
882080 A-GAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAA
882098 ATGAAAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAA
* *
882117 ATTAAAATCGCAATACGAA
1 ATGAAAATCGCAATGCGAA
882136 ATGAAAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAA
882155 ATGAAAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAA
882174 ATGAAAATCGCAA--CG-A
1 ATGAAAATCGCAATGCGAA
882190 A-G--AATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAA
882206 ATGAAAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAA
882225 ATGAAAATCGCAA
1 ATGAAAATCGCAA
882238 CGAGATAATC
Statistics
Matches: 246, Mismatches: 10, Indels: 43
0.82 0.03 0.14
Matches are distributed among these distances:
13 8 0.03
14 30 0.12
15 6 0.02
16 10 0.04
17 8 0.03
18 4 0.02
19 167 0.68
20 13 0.05
ACGTcount: A:0.47, C:0.17, G:0.22, T:0.14
Consensus pattern (19 bp):
ATGAAAATCGCAATGCGAA
Found at i:882136 original size:38 final size:38
Alignment explanation
Indices: 881941--882259 Score: 393
Period size: 33 Copynumber: 9.1 Consensus size: 38
881931 AAATCCCAAC
881941 ATGAAAATCGCAATGCGGAAATGAAAATCGCAA--CG--
1 ATGAAAATCGCAATGC-GAAATGAAAATCGCAATGCGAA
*
881976 A-GAGAATCGCAATGCGAAATGAAAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAA
*
882013 ATGAAAATCGCAA--CG--A-GAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAA
882046 ATGAAAATCGCAATGCGAAATGAAAATCGCAA--CG--
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAA
*
882080 A-GAGAATCGCAATGCGAAATGAAAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAA
* *
882117 ATTAAAATCGCAATACGAAATGAAAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAA
882155 ATGAAAATCGCAATGCGAAATGAAAATCGCAA--CG-A
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAA
882190 A-G--AATCGCAATGCGAAATGAAAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAA
*
882225 ATGAAAATCGCAA--CG--A-GATAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAA
882258 AT
1 AT
882260 TATAAACGCA
Statistics
Matches: 252, Mismatches: 11, Indels: 44
0.82 0.04 0.14
Matches are distributed among these distances:
32 27 0.11
33 92 0.37
34 19 0.08
35 11 0.04
36 9 0.04
37 3 0.01
38 91 0.36
ACGTcount: A:0.47, C:0.17, G:0.22, T:0.15
Consensus pattern (38 bp):
ATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAA
Found at i:882275 original size:52 final size:52
Alignment explanation
Indices: 881941--882259 Score: 550
Period size: 52 Copynumber: 6.0 Consensus size: 52
881931 AAATCCCAAC
881941 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
881994 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
882046 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
* *
882098 ATGAAAATCGCAATGCGAAATTAAAATCGCAATACGAAATGAAAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGC-A-ACG--A-GAGAATCGCAATGCGAA
882155 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGA-AGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
*
882206 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGATAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
882258 AT
1 AT
882260 TATAAACGCA
Statistics
Matches: 255, Mismatches: 5, Indels: 13
0.93 0.02 0.05
Matches are distributed among these distances:
51 50 0.20
52 134 0.53
53 18 0.07
54 3 0.01
55 3 0.01
56 2 0.01
57 45 0.18
ACGTcount: A:0.47, C:0.17, G:0.22, T:0.15
Consensus pattern (52 bp):
ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
Found at i:882374 original size:19 final size:19
Alignment explanation
Indices: 882266--882366 Score: 142
Period size: 20 Copynumber: 5.6 Consensus size: 19
882256 AAATTATAAA
882266 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
882285 CCGCATTGCGATTTTCATTT
1 -CGCATTGCGATTTTCATTT
*
882305 CGCATTGCGA--TTC-TCT
1 CGCATTGCGATTTTCATTT
882321 CG--TTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
882338 CGCATTGCGA-TTTCATTT
1 CGCATTGCGATTTTCATTT
882356 CGCATTGCGAT
1 CGCATTGCGAT
882367 AGTCATTTTT
Statistics
Matches: 73, Mismatches: 2, Indels: 13
0.83 0.02 0.15
Matches are distributed among these distances:
14 6 0.08
16 7 0.10
17 7 0.10
18 18 0.25
19 16 0.22
20 19 0.26
ACGTcount: A:0.15, C:0.24, G:0.18, T:0.44
Consensus pattern (19 bp):
CGCATTGCGATTTTCATTT
Found at i:882492 original size:14 final size:14
Alignment explanation
Indices: 882473--882508 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
882463 CATCAATTAC
882473 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
882487 ACAAATCATCTTTT
1 ACAAATCAACTTTT
882501 AC-AATCAA
1 ACAAATCAA
882509 TTAAACAATC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 5 0.25
14 15 0.75
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.33
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:882518 original size:12 final size:12
Alignment explanation
Indices: 882501--882575 Score: 57
Period size: 12 Copynumber: 6.2 Consensus size: 12
882491 ATCATCTTTT
882501 ACAATCAATTAA
1 ACAATCAATTAA
882513 ACAATCAA--AA
1 ACAATCAATTAA
* **
882523 ATTGAATCAACTTTT
1 A--CAATCAA-TTAA
882538 ACAAATCAATTAA
1 AC-AATCAATTAA
*
882551 ACAATCAA-AAA
1 ACAATCAATTAA
882562 ACAATCAATTAA
1 ACAATCAATTAA
882574 AC
1 AC
882576 TATTGAATCA
Statistics
Matches: 48, Mismatches: 8, Indels: 14
0.69 0.11 0.20
Matches are distributed among these distances:
10 3 0.06
11 10 0.21
12 24 0.50
13 4 0.08
14 6 0.12
15 1 0.02
ACGTcount: A:0.57, C:0.17, G:0.01, T:0.24
Consensus pattern (12 bp):
ACAATCAATTAA
Found at i:882537 original size:37 final size:38
Alignment explanation
Indices: 882490--882561 Score: 128
Period size: 38 Copynumber: 1.9 Consensus size: 38
882480 AACTTTTACA
*
882490 AATCATCTTTTAC-AATCAATTAAACAATCAAAAATTG
1 AATCAACTTTTACAAATCAATTAAACAATCAAAAATTG
882527 AATCAACTTTTACAAATCAATTAAACAATCAAAAA
1 AATCAACTTTTACAAATCAATTAAACAATCAAAAA
882562 ACAATCAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
37 12 0.36
38 21 0.64
ACGTcount: A:0.53, C:0.17, G:0.01, T:0.29
Consensus pattern (38 bp):
AATCAACTTTTACAAATCAATTAAACAATCAAAAATTG
Found at i:884408 original size:19 final size:19
Alignment explanation
Indices: 884368--884502 Score: 137
Period size: 19 Copynumber: 7.6 Consensus size: 19
884358 TAGTTTACTT
* *
884368 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
**
884388 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
884407 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
884426 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
884440 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
884459 TCGCAA--CGAAA-G--AA
1 TCGCAACGCGAAATGAAAA
884473 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
884492 TCGCAATGCGA
1 TCGCAACGCGA
884503 TTTGGTTTCG
Statistics
Matches: 97, Mismatches: 8, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
14 16 0.16
16 11 0.11
17 11 0.11
19 47 0.48
20 12 0.12
ACGTcount: A:0.46, C:0.24, G:0.19, T:0.10
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:884443 original size:14 final size:14
Alignment explanation
Indices: 884424--884480 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
884414 GCGAAATGAA
*
884424 AATCGCAACGACAG
1 AATCGCAACGAAAG
884438 AATCGCAACGCGAAATG
1 AATCGCAA--CGAAA-G
884455 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
884471 AATCGCAACG
1 AATCGCAACG
884481 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.46, C:0.25, G:0.21, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:884447 original size:33 final size:33
Alignment explanation
Indices: 884405--884497 Score: 177
Period size: 33 Copynumber: 2.8 Consensus size: 33
884395 GCGAAACCAA
*
884405 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
884438 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
884471 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
884498 TGCGATTTGG
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 59 1.00
ACGTcount: A:0.47, C:0.23, G:0.20, T:0.10
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:884494 original size:52 final size:54
Alignment explanation
Indices: 884368--884502 Score: 131
Period size: 52 Copynumber: 2.5 Consensus size: 54
884358 TAGTTTACTT
*
884368 TCGCAACACGAAACTTAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAATGAAAA
1 TCGCAAC-CGAAA-TGAAAATCGCAACGCGAAACCAAAATCGCAAC-CGAAATG-AAA
* **
884426 TCGCAA-CGACA-G--AATCGCAACGCGAAATGAAAATCGCAA-CGAAA-G-AA
1 TCGCAACCGAAATGAAAATCGCAACGCGAAACCAAAATCGCAACCGAAATGAAA
*
884473 TCGCAACGCGAAATGAAAATCGCAATGCGA
1 TCGCAAC-CGAAATGAAAATCGCAACGCGA
884503 TTTGGTTTCG
Statistics
Matches: 66, Mismatches: 6, Indels: 16
0.75 0.07 0.18
Matches are distributed among these distances:
47 8 0.12
49 5 0.08
50 6 0.09
52 37 0.56
56 4 0.06
58 6 0.09
ACGTcount: A:0.46, C:0.24, G:0.19, T:0.10
Consensus pattern (54 bp):
TCGCAACCGAAATGAAAATCGCAACGCGAAACCAAAATCGCAACCGAAATGAAA
Found at i:884543 original size:33 final size:33
Alignment explanation
Indices: 884498--884588 Score: 141
Period size: 33 Copynumber: 2.8 Consensus size: 33
884488 AAAATCGCAA
884498 TGCGA-TTTGGTTTCGCGTTGCGA-TCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCGT
884530 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
**
884563 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
884589 TTGGTTTCGC
Statistics
Matches: 55, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
32 5 0.09
33 48 0.87
34 2 0.04
ACGTcount: A:0.08, C:0.19, G:0.29, T:0.45
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:884551 original size:19 final size:19
Alignment explanation
Indices: 884498--884625 Score: 116
Period size: 19 Copynumber: 7.3 Consensus size: 19
884488 AAAATCGCAA
884498 TGCGA-TTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
884516 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
884530 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
884549 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
884563 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
884582 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
884601 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
884621 TGCGA
1 TGCGA
884626 AAGTAAACTA
Statistics
Matches: 89, Mismatches: 9, Indels: 22
0.74 0.08 0.18
Matches are distributed among these distances:
14 22 0.25
15 1 0.01
16 2 0.02
17 2 0.02
18 7 0.08
19 42 0.47
20 13 0.15
ACGTcount: A:0.09, C:0.17, G:0.29, T:0.45
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:884809 original size:93 final size:92
Alignment explanation
Indices: 884669--884862 Score: 361
Period size: 93 Copynumber: 2.1 Consensus size: 92
884659 TTGAATGGAT
*
884669 AAATTTACTTTCAACCAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACA
1 AAATTTACTTTCAACCAAAGACAAAACAAAAACAAATACTATTTCACAGTGTTAAAGAATACACA
884734 GTTTAGCAGAATTGGCAGCAACCGAAC
66 GTTTAGCAGAATTGGCAGCAACCGAAC
884761 AAATTTACTTTCAACCAAAAGACAAAACAAAAACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACC-AAAGACAAAACAAAAACAAATACTATTTCACAGTGTTAAAGAATACAC
*
884826 AGTTTAGCAGAATTGGCAGCAACCGAAT
65 AGTTTAGCAGAATTGGCAGCAACCGAAC
884854 AAATTTACT
1 AAATTTACT
884863 AAGCAATCTA
Statistics
Matches: 99, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
92 16 0.16
93 83 0.84
ACGTcount: A:0.46, C:0.19, G:0.12, T:0.23
Consensus pattern (92 bp):
AAATTTACTTTCAACCAAAGACAAAACAAAAACAAATACTATTTCACAGTGTTAAAGAATACACA
GTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:886585 original size:14 final size:14
Alignment explanation
Indices: 886566--886655 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
886556 TTGAAATGAA
886566 AATCGCAACGAGAG
1 AATCGCAACGAGAG
886580 AATCGCAACGCGAGATG
1 AATCGCAA--CGAGA-G
886597 ACAATCGCAACGAGAG
1 --AATCGCAACGAGAG
*
886613 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
886632 AATCGCAACGAGAG
1 AATCGCAACGAGAG
886646 AATCGCAACG
1 AATCGCAACG
886656 CGAAATGAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.42, C:0.23, G:0.26, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:886603 original size:33 final size:33
Alignment explanation
Indices: 886558--886672 Score: 212
Period size: 33 Copynumber: 3.5 Consensus size: 33
886548 TCTTTTGGTT
886558 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
* *
886591 GAGATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
886624 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
886657 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
886673 TGCGATTTTG
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.45, C:0.21, G:0.24, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Done.