genome.fa.s7852.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007852.1 Hibiscus syriacus cultivar Beakdansim tig00110212_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82824

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
499--545	20	2.3	20	100	0	94	36	25	23	14	1.93
544--581	19	2.0	19	94	0	67	44	15	21	18	1.86
571--621	14	3.2	16	73	26	54	11	23	19	45	1.83
571--647	32	2.4	32	88	2	109	12	23	22	41	1.88
2591--2694	19	5.7	19	77	16	87	41	23	22	13	1.89
2722--2778	14	3.8	14	78	17	69	10	17	24	47	1.79
2779--2833	20	2.8	19	83	8	65	16	23	23	36	1.94
2705--2794	32	2.8	32	96	1	162	12	18	22	46	1.82
3297--3341	18	2.5	18	88	0	72	15	13	44	26	1.83
4644--4686	20	2.2	20	95	0	77	53	18	18	9	1.70
4965--5008	22	2.0	22	95	0	79	18	15	45	20	1.85
5254--5354	20	4.9	21	71	12	59	20	18	17	42	1.89
5176--5313	41	3.4	41	76	4	109	25	17	22	34	1.95
5196--5310	20	5.7	21	81	2	103	26	18	23	32	1.97
5299--5391	41	2.3	41	98	0	141	18	23	18	39	1.92
5299--5391	20	4.6	20	78	6	98	18	23	18	39	1.92
5299--5391	21	4.6	20	78	4	96	18	23	18	39	1.92
12851--12889	17	2.4	17	95	4	71	51	5	0	43	1.24
12993--13027	9	3.9	9	96	0	61	25	8	20	45	1.79
14833--14947	60	1.9	60	89	3	178	30	17	18	33	1.94
14848--14960	60	1.9	60	87	7	167	30	18	16	34	1.93
23343--23419	40	1.9	40	89	0	118	31	22	14	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25348--25707	139	2.6	139	86	2	506	40	7	10	41	1.68
28949--29003	24	2.3	24	96	0	101	34	9	16	40	1.80
30357--30404	2	24.0	2	100	0	96	50	0	0	50	1.00
30706--30740	18	1.9	18	88	0	52	25	14	31	28	1.95
39977--40049	23	3.2	23	82	7	94	39	21	4	34	1.73
40472--40557	39	2.2	39	93	0	145	18	13	18	48	1.80
40816--40852	18	2.1	18	89	0	56	51	10	5	32	1.60
41288--41350	23	2.7	23	92	0	99	38	20	4	36	1.74
41695--41760	25	2.6	25	80	0	87	42	13	9	34	1.76
44228--44720	183	2.7	183	94	0	871	33	17	15	34	1.91
46219--46299	3	27.0	3	75	0	72	23	34	6	35	1.80
46223--46311	12	7.4	12	84	0	88	21	34	7	35	1.82
46223--46314	18	5.1	18	77	0	76	20	34	7	36	1.81
46235--46311	36	2.1	36	90	0	118	20	35	9	35	1.85
46223--46314	6	15.3	6	79	0	67	20	34	7	36	1.81
47779--49341	397	3.9	397	96	0	2810	31	17	15	35	1.91
47779--49341	199	7.9	199	96	0	2771	31	17	15	35	1.91
49451--49499	19	2.6	19	93	0	80	57	10	2	30	1.43
51290--51355	33	2.0	33	90	0	105	22	48	0	28	1.51
51389--51432	21	2.1	21	91	0	70	15	31	11	40	1.83
53826--53872	20	2.3	20	89	10	78	17	17	10	55	1.69
53921--54864	228	4.2	228	97	1	1772	39	8	7	44	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61195--61243	23	2.1	23	84	0	62	38	14	10	36	1.80
64466--64500	18	1.9	18	88	0	52	28	17	0	54	1.43
69624--69658	18	1.9	18	88	0	52	28	17	0	54	1.43
70933--70965	7	4.6	7	92	7	57	27	27	33	12	1.92
70957--70986	13	2.3	13	88	0	51	16	23	43	16	1.87
70963--71009	18	2.6	18	96	0	85	10	23	48	17	1.77
77265--77301	3	12.7	3	83	16	51	67	0	0	32	0.91
77265--77301	11	3.5	11	96	3	67	67	0	0	32	0.91

Tables:   1

The End!