Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007854.1 Hibiscus syriacus cultivar Beakdansim tig00110214_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 276407
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34
File 1 of 2
Found at i:14087 original size:29 final size:29
Alignment explanation
Indices: 14045--14101 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
14035 TTTTCACCTA
14045 ACTAAATTGATGTAAGCAATGACATCAAT
1 ACTAAATTGATGTAAGCAATGACATCAAT
*
14074 ACTAAATTGATGTATGCAATGACATCAA
1 ACTAAATTGATGTAAGCAATGACATCAA
14102 ATTAATTTAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.44, C:0.14, G:0.14, T:0.28
Consensus pattern (29 bp):
ACTAAATTGATGTAAGCAATGACATCAAT
Found at i:14170 original size:13 final size:13
Alignment explanation
Indices: 14152--14178 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14142 TTCAACACTC
14152 CTCTCAATGTTAG
1 CTCTCAATGTTAG
14165 CTCTCAATGTTAG
1 CTCTCAATGTTAG
14178 C
1 C
14179 CTCCATTCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.37
Consensus pattern (13 bp):
CTCTCAATGTTAG
Found at i:18678 original size:29 final size:29
Alignment explanation
Indices: 18636--18692 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
18626 TTTTCACCTA
18636 ACTAAATTGATGTAAGCAATGACATCAAT
1 ACTAAATTGATGTAAGCAATGACATCAAT
18665 ACTAAATTGATGTAAGCAATGACATCAA
1 ACTAAATTGATGTAAGCAATGACATCAA
18693 ATTAATTTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.46, C:0.14, G:0.14, T:0.26
Consensus pattern (29 bp):
ACTAAATTGATGTAAGCAATGACATCAAT
Found at i:25198 original size:21 final size:20
Alignment explanation
Indices: 25145--25198 Score: 51
Period size: 18 Copynumber: 2.8 Consensus size: 20
25135 GTTGAGACTC
**
25145 CATCAAAATTGAT-TCAATG
1 CATCAAAATTGATCTCAAAA
*
25164 CAT-AAAA-TCATCTCAACAA
1 CATCAAAATTGATCTCAA-AA
25183 CATCAAAATTGATCTC
1 CATCAAAATTGATCTC
25199 CCTAAATGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
17 3 0.11
18 8 0.30
19 6 0.22
20 4 0.15
21 6 0.22
ACGTcount: A:0.44, C:0.22, G:0.06, T:0.28
Consensus pattern (20 bp):
CATCAAAATTGATCTCAAAA
Found at i:27615 original size:45 final size:45
Alignment explanation
Indices: 27566--27651 Score: 145
Period size: 45 Copynumber: 1.9 Consensus size: 45
27556 CACTAACATA
* **
27566 ATATATGATTATATATATACATCAAATGTAAACTATGAAATGTAT
1 ATATATGATTATATATATAAATCAAACATAAACTATGAAATGTAT
27611 ATATATGATTATATATATAAATCAAACATAAACTATGAAAT
1 ATATATGATTATATATATAAATCAAACATAAACTATGAAAT
27652 AGTGTTATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.36
Consensus pattern (45 bp):
ATATATGATTATATATATAAATCAAACATAAACTATGAAATGTAT
Found at i:31367 original size:81 final size:83
Alignment explanation
Indices: 31282--31432 Score: 198
Period size: 83 Copynumber: 1.8 Consensus size: 83
31272 CGCTATAGAG
* * * * **
31282 TAGTACTTTAGTGGTATTT-TATACAAACGCCACAATA-GGTTCATCCATTGTGGTATTTTTTCA
1 TAGTACTTTAGTGGCATTTGTATAAAAACACCACAATAGGGTTCATCCATAGTGACATTTTTTCA
31345 ACAAACGCCTTGACAGAA
66 ACAAACGCCTTGACAGAA
* * * *
31363 TAGTACTTTAGTGGCATTTGTATAAAAATATCATAATAGGGTTCATCTATAGTGACATTTTTTCA
1 TAGTACTTTAGTGGCATTTGTATAAAAACACCACAATAGGGTTCATCCATAGTGACATTTTTTCA
31428 ACAAA
66 ACAAA
31433 TATTGTAACA
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.31
82 13 0.22
83 27 0.47
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.36
Consensus pattern (83 bp):
TAGTACTTTAGTGGCATTTGTATAAAAACACCACAATAGGGTTCATCCATAGTGACATTTTTTCA
ACAAACGCCTTGACAGAA
Found at i:44513 original size:91 final size:90
Alignment explanation
Indices: 44358--44567 Score: 350
Period size: 91 Copynumber: 2.3 Consensus size: 90
44348 TATCTAATTC
*
44358 TGAATTTGGAAT-TAGACAATATATATTCACATAAAATTCTTGATTTTAAAGATTTATTGGTTTG
1 TGAATTTGGAATGT-GACAATATATATTCACATAAAATTCTTGATTTTAAAGATTTATTGATTTG
*
44422 ATTGATTAAAACTAAAACTTATAACTT
65 ACTGATTAAAACT-AAACTTATAACTT
44449 TGAATTTGGAATGTGACAATATATATTCACATAAAATTCTTGATTTTAAAGATTTATTGATTTGA
1 TGAATTTGGAATGTGACAATATATATTCACATAAAATTCTTGATTTTAAAGATTTATTGATTTGA
* *
44514 CTGATTAAAACTAAACTTCTAGCTT
66 CTGATTAAAACTAAACTTATAACTT
*
44539 TAAATTTGGAATGTGACAATATATATTCA
1 TGAATTTGGAATGTGACAATATATATTCA
44568 GTTGGATCTT
Statistics
Matches: 113, Mismatches: 5, Indels: 3
0.93 0.04 0.02
Matches are distributed among these distances:
90 39 0.35
91 73 0.65
92 1 0.01
ACGTcount: A:0.39, C:0.09, G:0.12, T:0.41
Consensus pattern (90 bp):
TGAATTTGGAATGTGACAATATATATTCACATAAAATTCTTGATTTTAAAGATTTATTGATTTGA
CTGATTAAAACTAAACTTATAACTT
Found at i:48278 original size:26 final size:28
Alignment explanation
Indices: 48221--48279 Score: 86
Period size: 26 Copynumber: 2.2 Consensus size: 28
48211 ATTCCAAGAT
* *
48221 AAATATTTAAAGTATATCATTTTTATCT
1 AAATATTTAAAGTAGATCATTTTTATCA
48249 AAATATTTAAAGT-GAT-ATTTTTATCA
1 AAATATTTAAAGTAGATCATTTTTATCA
48275 AAATA
1 AAATA
48280 ACTATCAAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 14 0.48
27 2 0.07
28 13 0.45
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.46
Consensus pattern (28 bp):
AAATATTTAAAGTAGATCATTTTTATCA
Found at i:55076 original size:6 final size:6
Alignment explanation
Indices: 55065--55089 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
55055 GCAATAACCA
55065 TAGGAG TAGGAG TAGGAG TAGGAG T
1 TAGGAG TAGGAG TAGGAG TAGGAG T
55090 TGACTCATCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.48, T:0.20
Consensus pattern (6 bp):
TAGGAG
Found at i:57963 original size:27 final size:26
Alignment explanation
Indices: 57884--57964 Score: 83
Period size: 27 Copynumber: 3.1 Consensus size: 26
57874 TGGTCGAAAA
* *
57884 GTAGAAAAATGAGGAACTTGAGA-CT
1 GTAGAAAACTGATGAACTTGAGAGCT
* * *
57909 GAAGAAAACTGATGAACTAGAGGGGCT
1 GTAGAAAACTGATGAACTTGA-GAGCT
*
57936 GTAGAAAACTGATGAGCTTGAGAAGCT
1 GTAGAAAACTGATGAACTTGAG-AGCT
57963 GT
1 GT
57965 TGGTGAGTGT
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
25 17 0.39
26 2 0.05
27 25 0.57
ACGTcount: A:0.40, C:0.10, G:0.31, T:0.20
Consensus pattern (26 bp):
GTAGAAAACTGATGAACTTGAGAGCT
Found at i:59981 original size:20 final size:20
Alignment explanation
Indices: 59936--60013 Score: 111
Period size: 20 Copynumber: 3.7 Consensus size: 20
59926 GCATGGGTAG
59936 TGCATCGATGCACATGTTAAAGAA
1 TGCATCGATGCAC-TG-T--AGAA
59960 TGCATCGATGCACTGTAGAA
1 TGCATCGATGCACTGTAGAA
*
59980 TGCATCGATGTACTGTAGAA
1 TGCATCGATGCACTGTAGAA
60000 TGCATCGATGCACT
1 TGCATCGATGCACT
60014 TCAAGGGGAA
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
20 36 0.69
22 1 0.02
23 2 0.04
24 13 0.25
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (20 bp):
TGCATCGATGCACTGTAGAA
Found at i:60990 original size:5 final size:5
Alignment explanation
Indices: 60980--61007 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
60970 GTGTGATAGC
60980 ATGAT ATGAT ATGAT ATGAT ATGAT ATG
1 ATGAT ATGAT ATGAT ATGAT ATGAT ATG
61008 TTCATGCATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.21, T:0.39
Consensus pattern (5 bp):
ATGAT
Found at i:61772 original size:30 final size:31
Alignment explanation
Indices: 61718--61786 Score: 113
Period size: 30 Copynumber: 2.3 Consensus size: 31
61708 TATATGAGCA
61718 ATGTGATAAAGGTATGGAAAATGATATGTCT
1 ATGTGATAAAGGTATGGAAAATGATATGTCT
*
61749 ATGTGATAGAGGTATGG-AAATGATATGTCT
1 ATGTGATAAAGGTATGGAAAATGATATGTCT
*
61779 ATGAGATA
1 ATGTGATA
61787 CACTATGTGA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
30 20 0.56
31 16 0.44
ACGTcount: A:0.38, C:0.03, G:0.28, T:0.32
Consensus pattern (31 bp):
ATGTGATAAAGGTATGGAAAATGATATGTCT
Found at i:62445 original size:5 final size:5
Alignment explanation
Indices: 62435--62462 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
62425 GTGTGATAGC
62435 ATGAT ATGAT ATGAT ATGAT ATGAT ATG
1 ATGAT ATGAT ATGAT ATGAT ATGAT ATG
62463 TCCATGCATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.21, T:0.39
Consensus pattern (5 bp):
ATGAT
Found at i:63227 original size:30 final size:31
Alignment explanation
Indices: 63173--63241 Score: 113
Period size: 30 Copynumber: 2.3 Consensus size: 31
63163 TATATGAGCA
63173 ATGTGATAAAGGTATAGAAAATGATATGTCT
1 ATGTGATAAAGGTATAGAAAATGATATGTCT
*
63204 ATGTGATAGAGGTATAG-AAATGATATGTCT
1 ATGTGATAAAGGTATAGAAAATGATATGTCT
*
63234 ATGAGATA
1 ATGTGATA
63242 CACTATGTGA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
30 20 0.56
31 16 0.44
ACGTcount: A:0.41, C:0.03, G:0.25, T:0.32
Consensus pattern (31 bp):
ATGTGATAAAGGTATAGAAAATGATATGTCT
Found at i:64125 original size:21 final size:21
Alignment explanation
Indices: 64099--64139 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
64089 TGAAGTTTTG
*
64099 TGCATCGATGCACTGTAGCAA
1 TGCATCGATACACTGTAGCAA
*
64120 TGCATCGGTACACTGTAGCA
1 TGCATCGATACACTGTAGCA
64140 CTGTTCATAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (21 bp):
TGCATCGATACACTGTAGCAA
Found at i:65866 original size:16 final size:16
Alignment explanation
Indices: 65815--65860 Score: 83
Period size: 16 Copynumber: 2.9 Consensus size: 16
65805 ATATACAATT
*
65815 TAACCCAAACTGAAAA
1 TAACCCGAACTGAAAA
65831 TAACCCGAACTGAAAA
1 TAACCCGAACTGAAAA
65847 TAACCCGAACTGAA
1 TAACCCGAACTGAA
65861 TTTAACTCGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.50, C:0.26, G:0.11, T:0.13
Consensus pattern (16 bp):
TAACCCGAACTGAAAA
Found at i:66019 original size:18 final size:19
Alignment explanation
Indices: 65996--66036 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
65986 AAGTTTACTT
65996 ATATT-ACTTATAATAAAA
1 ATATTAACTTATAATAAAA
*
66014 ATATTAAATTTATAATAAAA
1 ATATT-AACTTATAATAAAA
66034 ATA
1 ATA
66037 ATAGAAAAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 5 0.25
20 15 0.75
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (19 bp):
ATATTAACTTATAATAAAA
Found at i:66049 original size:14 final size:15
Alignment explanation
Indices: 66032--66067 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
66022 TTTATAATAA
66032 AAATAATAG-AAAAG
1 AAATAATAGCAAAAG
66046 AAATAAT-GCAAAAG
1 AAATAATAGCAAAAG
66060 AAATAATA
1 AAATAATA
66068 TTAAATTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 1 0.05
14 19 0.95
ACGTcount: A:0.69, C:0.03, G:0.11, T:0.17
Consensus pattern (15 bp):
AAATAATAGCAAAAG
Found at i:66099 original size:23 final size:22
Alignment explanation
Indices: 66003--66099 Score: 63
Period size: 23 Copynumber: 4.1 Consensus size: 22
65993 CTTATATTAC
*
66003 TTATAATAAAAAT-AT-TAAAT
1 TTATAATAAAAATAATAGAAAT
*
66023 TTATAATAAAAATAATAGAAAAG
1 TTATAATAAAAATAATAG-AAAT
** *
66046 AAATAATGCAAAAGAAATAATATTAAAT
1 TTATAAT----AA-AAATAATA-GAAAT
66074 TTATAATAAAAATAATAGAAAGT
1 TTATAATAAAAATAATAGAAA-T
66097 TTA
1 TTA
66100 CTTATGTTAC
Statistics
Matches: 58, Mismatches: 9, Indels: 17
0.69 0.11 0.20
Matches are distributed among these distances:
20 13 0.22
21 2 0.03
22 3 0.05
23 20 0.34
24 2 0.03
27 2 0.03
28 16 0.28
ACGTcount: A:0.62, C:0.01, G:0.06, T:0.31
Consensus pattern (22 bp):
TTATAATAAAAATAATAGAAAT
Found at i:68378 original size:42 final size:42
Alignment explanation
Indices: 68319--68433 Score: 194
Period size: 42 Copynumber: 2.7 Consensus size: 42
68309 CCGAGTTATA
*
68319 GTGTTTGTTTCACGTAATTCGTTTTCCGGAAAATATTTTCCC
1 GTGTTTGTTTCACGTAATTCGTTTTCCGGAAAACATTTTCCC
** *
68361 GTGTTTGTTTCACGTAATTCGTTTTTTGGAAAACGTTTTCCC
1 GTGTTTGTTTCACGTAATTCGTTTTCCGGAAAACATTTTCCC
68403 GTGTTTGTTTCACGTAATTCGTTTTCCGGAA
1 GTGTTTGTTTCACGTAATTCGTTTTCCGGAA
68434 TGTAATTCAT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 67 1.00
ACGTcount: A:0.17, C:0.17, G:0.19, T:0.46
Consensus pattern (42 bp):
GTGTTTGTTTCACGTAATTCGTTTTCCGGAAAACATTTTCCC
Found at i:68669 original size:22 final size:23
Alignment explanation
Indices: 68622--68682 Score: 65
Period size: 22 Copynumber: 2.8 Consensus size: 23
68612 TAATTATTAA
* *
68622 AATATTTAAAAT-ATAT-TTATT
1 AATATTTATAATAATATAATATT
68643 AATATTTATAATAATATAATATT
1 AATATTTATAATAATATAATATT
* *
68666 -ATATTTTTAATATTATA
1 AATATTTATAATAATATA
68683 TAAAATAATC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
21 11 0.32
22 19 0.56
23 4 0.12
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
AATATTTATAATAATATAATATT
Found at i:68745 original size:54 final size:52
Alignment explanation
Indices: 68648--68750 Score: 138
Period size: 54 Copynumber: 1.9 Consensus size: 52
68638 TTATTAATAT
*
68648 TTATAATAATATAATATTATATTTTTAATATTATATAAAATAATCAATTATA
1 TTATAATAATATAATATTATATTTTTAATATTATATAAAATAATAAATTATA
*
68700 TTATAATAATATAAGATATTATATTTTT-ATTTTA-ATAATATATAATAAATT
1 TTATAATAATAT-A-ATATTATATTTTTAATATTATATAA-A-ATAATAAATT
68751 TTTTTATATA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
52 16 0.36
53 7 0.16
54 22 0.49
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.50
Consensus pattern (52 bp):
TTATAATAATATAATATTATATTTTTAATATTATATAAAATAATAAATTATA
Found at i:68778 original size:33 final size:30
Alignment explanation
Indices: 68631--68804 Score: 104
Period size: 30 Copynumber: 5.9 Consensus size: 30
68621 AAATATTTAA
68631 AATA-TATTTAT-TAATATTT-ATAATA-AT
1 AATATTATTTATAT-ATATTTAATAATATAT
* *
68658 -ATAATA-TTATAT-T-TTTAATATTATAT
1 AATATTATTTATATATATTTAATAATATAT
* * **
68684 AAAATAATCAAT-TATATTATAATAATATA-
1 AATATTATTTATATATATT-TAATAATATAT
*
68713 AGATATTATATT-TTTAT-TTTAATAATATAT
1 A-ATATTAT-TTATATATATTTAATAATATAT
*
68743 AATAAATTTTTTTATATATATTTAATAATGA-AT
1 AAT--A-TTATTTATATATATTTAATAAT-ATAT
68776 AATATTATTTATATATATTTCAATAATAT
1 AATATTATTTATATATATTT-AATAATAT
68805 TTTAGTAAAG
Statistics
Matches: 112, Mismatches: 14, Indels: 38
0.68 0.09 0.23
Matches are distributed among these distances:
24 3 0.03
25 6 0.05
26 9 0.08
27 7 0.06
28 3 0.03
29 15 0.13
30 34 0.30
31 13 0.12
32 7 0.06
33 14 0.12
34 1 0.01
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (30 bp):
AATATTATTTATATATATTTAATAATATAT
Found at i:69043 original size:20 final size:20
Alignment explanation
Indices: 68965--69034 Score: 131
Period size: 20 Copynumber: 3.5 Consensus size: 20
68955 TTTCCAGATG
68965 TTTTCCAGAAATGTAATTCA
1 TTTTCCAGAAATGTAATTCA
68985 TTTTCCAGAAATGTAATTCA
1 TTTTCCAGAAATGTAATTCA
*
69005 TTTTACAGAAATGTAATTCA
1 TTTTCCAGAAATGTAATTCA
69025 TTTTCCAGAA
1 TTTTCCAGAA
69035 TTCAAATTCC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (20 bp):
TTTTCCAGAAATGTAATTCA
Found at i:69043 original size:40 final size:40
Alignment explanation
Indices: 68965--69043 Score: 122
Period size: 40 Copynumber: 2.0 Consensus size: 40
68955 TTTCCAGATG
* **
68965 TTTTCCAGAAATGTAATTCATTTTCCAGAAATGTAATTCA
1 TTTTACAGAAATGTAATTCATTTTCCAGAAATCAAATTCA
*
69005 TTTTACAGAAATGTAATTCATTTTCCAGAATTCAAATTC
1 TTTTACAGAAATGTAATTCATTTTCCAGAAATCAAATTC
69044 CAGTAATTCA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.41
Consensus pattern (40 bp):
TTTTACAGAAATGTAATTCATTTTCCAGAAATCAAATTCA
Found at i:69053 original size:15 final size:15
Alignment explanation
Indices: 69017--69083 Score: 91
Period size: 15 Copynumber: 4.5 Consensus size: 15
69007 TTACAGAAAT
**
69017 GTAATTCATTTTCCA
1 GTAATTCAAATTCCA
69032 G-AATTCAAATTCCA
1 GTAATTCAAATTCCA
**
69046 GTAATTCATTTTCCA
1 GTAATTCAAATTCCA
69061 GTAATTCAAATTCCA
1 GTAATTCAAATTCCA
69076 GTAATTCA
1 GTAATTCA
69084 TTTTCTGGAA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
14 12 0.27
15 33 0.73
ACGTcount: A:0.34, C:0.19, G:0.07, T:0.39
Consensus pattern (15 bp):
GTAATTCAAATTCCA
Found at i:69059 original size:29 final size:30
Alignment explanation
Indices: 69017--69088 Score: 137
Period size: 30 Copynumber: 2.4 Consensus size: 30
69007 TTACAGAAAT
69017 GTAATTCATTTTCCAG-AATTCAAATTCCA
1 GTAATTCATTTTCCAGTAATTCAAATTCCA
69046 GTAATTCATTTTCCAGTAATTCAAATTCCA
1 GTAATTCATTTTCCAGTAATTCAAATTCCA
69076 GTAATTCATTTTC
1 GTAATTCATTTTC
69089 TGGAAAACCA
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
29 16 0.38
30 26 0.62
ACGTcount: A:0.32, C:0.19, G:0.07, T:0.42
Consensus pattern (30 bp):
GTAATTCATTTTCCAGTAATTCAAATTCCA
Found at i:74600 original size:10 final size:11
Alignment explanation
Indices: 74575--74617 Score: 54
Period size: 10 Copynumber: 4.0 Consensus size: 11
74565 TACCTTAAAA
74575 AGAGAATATTTG
1 AGAGAA-ATTTG
74587 AGAGAAATTT-
1 AGAGAAATTTG
*
74597 AGAGAATTTTG
1 AGAGAAATTTG
74608 AGAG-AATTTG
1 AGAGAAATTTG
74618 GTGTGATAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
10 14 0.50
11 8 0.29
12 6 0.21
ACGTcount: A:0.42, C:0.00, G:0.26, T:0.33
Consensus pattern (11 bp):
AGAGAAATTTG
Found at i:74611 original size:11 final size:11
Alignment explanation
Indices: 74575--74616 Score: 59
Period size: 11 Copynumber: 3.8 Consensus size: 11
74565 TACCTTAAAA
74575 AGAGAATATTTG
1 AGAGAAT-TTTG
*
74587 AGAGAAATTT-
1 AGAGAATTTTG
74597 AGAGAATTTTG
1 AGAGAATTTTG
74608 AGAGAATTT
1 AGAGAATTT
74617 GGTGTGATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
10 9 0.33
11 12 0.44
12 6 0.22
ACGTcount: A:0.43, C:0.00, G:0.24, T:0.33
Consensus pattern (11 bp):
AGAGAATTTTG
Found at i:75256 original size:29 final size:29
Alignment explanation
Indices: 75224--75281 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
75214 CATTAATTCT
75224 TTTATTACTTTTTCATTCTTAGATTTTGA
1 TTTATTACTTTTTCATTCTTAGATTTTGA
75253 TTTATTACTTTTTCATTCTTAGATTTTGA
1 TTTATTACTTTTTCATTCTTAGATTTTGA
75282 AGGAATTGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.21, C:0.10, G:0.07, T:0.62
Consensus pattern (29 bp):
TTTATTACTTTTTCATTCTTAGATTTTGA
Found at i:75494 original size:60 final size:59
Alignment explanation
Indices: 75377--75556 Score: 182
Period size: 60 Copynumber: 3.0 Consensus size: 59
75367 GCAACATAAT
* * * * * *
75377 TCCCTAAACTTTGATTCTCATTTTAAATTGGTCTTTAAACTTTTAAATATTTTAATTTCA
1 TCCCTAAACTATGA-TCTCAATTTAAATTAGTCCTTAAACTTTTAAACATTTCAATTTCA
* * * *
75437 TCCCCAAACTATGATCCTCAATTTAAATTAGTCCTTAAACTTTTGAACATTCCAATTTTA
1 TCCCTAAACTATGAT-CTCAATTTAAATTAGTCCTTAAACTTTTAAACATTTCAATTTCA
* * * * *
75497 TCCTTAAACTATGAATCTC-ATTCTAAATTTGTCCATAAACTTCTAAACCTTTCAATTTCA
1 TCCCTAAACTATG-ATCTCAATT-TAAATTAGTCCTTAAACTTTTAAACATTTCAATTTCA
75557 ACTTCAAATC
Statistics
Matches: 98, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
59 4 0.04
60 92 0.94
61 2 0.02
ACGTcount: A:0.32, C:0.21, G:0.04, T:0.43
Consensus pattern (59 bp):
TCCCTAAACTATGATCTCAATTTAAATTAGTCCTTAAACTTTTAAACATTTCAATTTCA
Found at i:76203 original size:30 final size:28
Alignment explanation
Indices: 76118--76205 Score: 79
Period size: 28 Copynumber: 3.0 Consensus size: 28
76108 TTTGGATTTG
76118 TAAGGATTAAATTATAAATATAGAAAAGTT
1 TAAGGATTAAA-TATAAAT-TAGAAAAGTT
* ** * *
76148 TATGGACCAAAT-TAAATAAACAAAAGTT
1 TAAGGATTAAATATAAAT-TAGAAAAGTT
76176 TAAGGATTAAAGTATAAATTAGTAAAAGTT
1 TAAGGATTAAA-TATAAATTAG-AAAAGTT
76206 AAAATAGAAT
Statistics
Matches: 45, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
28 22 0.49
29 3 0.07
30 20 0.44
ACGTcount: A:0.52, C:0.03, G:0.14, T:0.31
Consensus pattern (28 bp):
TAAGGATTAAATATAAATTAGAAAAGTT
Found at i:78510 original size:6 final size:6
Alignment explanation
Indices: 78499--78527 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
78489 ACCCTCACCT
78499 CACGCC CACGCC CACGCC CACGCC CACGC
1 CACGCC CACGCC CACGCC CACGCC CACGC
78528 AGTGTCATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.66, G:0.17, T:0.00
Consensus pattern (6 bp):
CACGCC
Found at i:81357 original size:50 final size:50
Alignment explanation
Indices: 81282--81408 Score: 227
Period size: 50 Copynumber: 2.5 Consensus size: 50
81272 GTGAAAACAG
*
81282 GTTAGTAAGGTATACATTTTTTGATCATTTTAATTTTGTAAAGAAAGCAA
1 GTTAGTAAGGTATACATTTTTTGATCATTTTAATTTTGCAAAGAAAGCAA
81332 GTTAGTAAGGTATACATTTTTTGATCATTTTAATTTTGCAAAGAAAGCAA
1 GTTAGTAAGGTATACATTTTTTGATCATTTTAATTTTGCAAAGAAAGCAA
* *
81382 GTTAGTAAGTTATACATATTTTGATCA
1 GTTAGTAAGGTATACATTTTTTGATCA
81409 GGTTACGAAC
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 74 1.00
ACGTcount: A:0.35, C:0.07, G:0.16, T:0.42
Consensus pattern (50 bp):
GTTAGTAAGGTATACATTTTTTGATCATTTTAATTTTGCAAAGAAAGCAA
Found at i:84709 original size:111 final size:111
Alignment explanation
Indices: 84576--84797 Score: 372
Period size: 111 Copynumber: 2.0 Consensus size: 111
84566 ATTACAAAAA
* *
84576 TTAATTCTTAATCTAATAATCATTCATTAAATAAATCAACTAATTAATACTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAAATAATACTAATAATTTAAATTA
* *
84641 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTCGAGATAT
66 AATTAAAACGTTAAAATATTACCGTATCAGCAAAGTGTAGAGATAT
*
84687 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAAATATTACTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAAATAATACTAATAATTTAAATTA
* * *
84752 AATTAAAACGTTAAAATATTATCGTATCAGTAAAGTTTAGAGATAT
66 AATTAAAACGTTAAAATATTACCGTATCAGCAAAGTGTAGAGATAT
84798 ATGATTTCCG
Statistics
Matches: 103, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
111 103 1.00
ACGTcount: A:0.46, C:0.10, G:0.07, T:0.37
Consensus pattern (111 bp):
TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAAATAATACTAATAATTTAAATTA
AATTAAAACGTTAAAATATTACCGTATCAGCAAAGTGTAGAGATAT
Found at i:85086 original size:50 final size:50
Alignment explanation
Indices: 85027--85151 Score: 180
Period size: 50 Copynumber: 2.5 Consensus size: 50
85017 GATACCCAGA
* *
85027 TATAGCGCGGATCAGGGGGCGCGCTATACCCACGTGGCGCCAGATCACCG
1 TATAGCGCGGATCAGGGGGCGCGCTATACCCACGTGGCGCCAAATCAACG
* ** *
85077 TATATCGCGGGGCAGGGGGCGCGCTATACCCACGTGGCGCTAAATCAACG
1 TATAGCGCGGATCAGGGGGCGCGCTATACCCACGTGGCGCCAAATCAACG
85127 TATAGCGC-GATTCAGGGGGCGCGCT
1 TATAGCGCGGA-TCAGGGGGCGCGCT
85152 TTACTGCTAC
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
49 1 0.02
50 64 0.98
ACGTcount: A:0.20, C:0.29, G:0.35, T:0.16
Consensus pattern (50 bp):
TATAGCGCGGATCAGGGGGCGCGCTATACCCACGTGGCGCCAAATCAACG
Found at i:94309 original size:3 final size:3
Alignment explanation
Indices: 94301--94364 Score: 101
Period size: 3 Copynumber: 21.3 Consensus size: 3
94291 TGAATCCTGC
* *
94301 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAC AGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
94349 AAT AAT AGT AAT AAT A
1 AAT AAT AAT AAT AAT A
94365 TAAAAACAGG
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:104134 original size:3 final size:3
Alignment explanation
Indices: 104126--104177 Score: 77
Period size: 3 Copynumber: 17.3 Consensus size: 3
104116 TGAATCCTGC
* * *
104126 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAC AGT AAT AAT AGT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
104174 AAT A
1 AAT A
104178 TAAAAACAGG
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:113833 original size:3 final size:3
Alignment explanation
Indices: 113825--113870 Score: 65
Period size: 3 Copynumber: 15.3 Consensus size: 3
113815 TGAATCCTGC
* * *
113825 AAT AAT AAT AAT AAT AAT AAT AAT AAC AGT AAT AAT AGT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
113871 TAAAAACAGG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:120525 original size:21 final size:21
Alignment explanation
Indices: 120408--120525 Score: 71
Period size: 21 Copynumber: 5.7 Consensus size: 21
120398 ACGCGAAATA
**
120408 AAAATCGCAACGCGA-TCCCC
1 AAAATCGCAACGCGATTTTCC
* ** *
120428 AGAATCGCAAATC-AGTTTCC
1 AAAATCGCAACGCGATTTTCC
*
120448 AAAATCGCAACGCGATTCTT-G
1 AAAATCGCAACGCGATT-TTCC
* ** *
120469 AAAATCGCAATGCGATAGTAC
1 AAAATCGCAACGCGATTTTCC
* **
120490 AAATTCGCATTGCGATTTTCC
1 AAAATCGCAACGCGATTTTCC
*
120511 AGAATCGCAACGCGA
1 AAAATCGCAACGCGA
120526 ATATGAAAAT
Statistics
Matches: 71, Mismatches: 23, Indels: 7
0.70 0.23 0.07
Matches are distributed among these distances:
19 1 0.01
20 24 0.34
21 44 0.62
22 2 0.03
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.21
Consensus pattern (21 bp):
AAAATCGCAACGCGATTTTCC
Found at i:120538 original size:20 final size:20
Alignment explanation
Indices: 120513--120565 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 20
120503 GATTTTCCAG
* *
120513 AATCGCAACGCGAATATGA-A
1 AATCGCAACGCGAACA-CATA
120533 AATCGCAAACGCGAACACATA
1 AATCGC-AACGCGAACACATA
120554 AATCGCAACGCG
1 AATCGCAACGCG
120566 TATCCGTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 13 0.45
21 16 0.55
ACGTcount: A:0.43, C:0.26, G:0.19, T:0.11
Consensus pattern (20 bp):
AATCGCAACGCGAACACATA
Found at i:120629 original size:19 final size:20
Alignment explanation
Indices: 120552--120704 Score: 204
Period size: 20 Copynumber: 7.7 Consensus size: 20
120542 CGCGAACACA
120552 TAAATCGCAACGCGTATCCG
1 TAAATCGCAACGCGTATCCG
* *
120572 TAAACCGCAACGTGTATCCG
1 TAAATCGCAACGCGTATCCG
120592 TAAATCGCAACGCGTATCCG
1 TAAATCGCAACGCGTATCCG
* *
120612 TAAATAGCAATG-GTATCCG
1 TAAATCGCAACGCGTATCCG
120631 TAAATCGCAACG-GTATCCG
1 TAAATCGCAACGCGTATCCG
* *
120650 TAAATCGCAACGAC-AATACG
1 TAAATCGCAACG-CGTATCCG
*
120670 TTAAATCGCAAAGCGTATCCG
1 -TAAATCGCAACGCGTATCCG
120691 TAAATCGCAACGCG
1 TAAATCGCAACGCG
120705 ATTTTTAAAG
Statistics
Matches: 115, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
19 36 0.31
20 64 0.56
21 15 0.13
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.20
Consensus pattern (20 bp):
TAAATCGCAACGCGTATCCG
Found at i:120642 original size:79 final size:79
Alignment explanation
Indices: 120552--120700 Score: 219
Period size: 79 Copynumber: 1.9 Consensus size: 79
120542 CGCGAACACA
*** * *
120552 TAAATCGCAACGCGTATCCGTAAACCGCAACGTGTATCCG-TAAATCGCAACGCGTATCCGTAAA
1 TAAATCGCAACG-GTATCCGTAAACCGCAACGACAATACGTTAAATCGCAAAGCGTATCCGTAAA
120616 TAGCAATGGTATCCG
65 TAGCAATGGTATCCG
*
120631 TAAATCGCAACGGTATCCGTAAATCGCAACGACAATACGTTAAATCGCAAAGCGTATCCGTAAAT
1 TAAATCGCAACGGTATCCGTAAACCGCAACGACAATACGTTAAATCGCAAAGCGTATCCGTAAAT
*
120696 CGCAA
66 AGCAA
120701 CGCGATTTTT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
78 22 0.35
79 40 0.65
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.21
Consensus pattern (79 bp):
TAAATCGCAACGGTATCCGTAAACCGCAACGACAATACGTTAAATCGCAAAGCGTATCCGTAAAT
AGCAATGGTATCCG
Found at i:121171 original size:21 final size:21
Alignment explanation
Indices: 121145--121219 Score: 93
Period size: 21 Copynumber: 3.7 Consensus size: 21
121135 TGCAGAAGAG
121145 TCGCAACGAGAGAAATGAAAA
1 TCGCAACGAGAGAAATGAAAA
* **
121166 TCGCAAC--GCGAAATGACTA
1 TCGCAACGAGAGAAATGAAAA
121185 TCTGC-ACGAGAGAAATGAAAA
1 TC-GCAACGAGAGAAATGAAAA
121206 TCGCAACGAGAGAA
1 TCGCAACGAGAGAA
121220 TCGCAACGCG
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
19 13 0.30
20 4 0.09
21 27 0.61
ACGTcount: A:0.45, C:0.19, G:0.24, T:0.12
Consensus pattern (21 bp):
TCGCAACGAGAGAAATGAAAA
Found at i:121180 original size:19 final size:19
Alignment explanation
Indices: 121156--121246 Score: 77
Period size: 19 Copynumber: 4.9 Consensus size: 19
121146 CGCAACGAGA
121156 GAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
** *
121175 GAAATGACTATCTGC-ACGAGA
1 GAAATGAAAATC-GCAAC--GC
121196 GAAATGAAAATCGCAA--C
1 GAAATGAAAATCGCAACGC
*
121213 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
121229 GAAATGAAAATCGCAACG
1 GAAATGAAAATCGCAACG
121247 AGAGAATCGC
Statistics
Matches: 55, Mismatches: 8, Indels: 18
0.68 0.10 0.22
Matches are distributed among these distances:
14 10 0.18
15 1 0.02
16 2 0.04
17 1 0.02
18 1 0.02
19 24 0.44
20 4 0.07
21 12 0.22
ACGTcount: A:0.45, C:0.20, G:0.23, T:0.12
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:121223 original size:14 final size:14
Alignment explanation
Indices: 121204--121260 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
121194 GAGAAATGAA
121204 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
121218 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
121237 AATCGCAACGAGAG
1 AATCGCAACGAGAG
121251 AATCGCAACG
1 AATCGCAACG
121261 CGAAACCAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.28
ACGTcount: A:0.44, C:0.23, G:0.25, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:121238 original size:33 final size:33
Alignment explanation
Indices: 121196--121276 Score: 144
Period size: 33 Copynumber: 2.5 Consensus size: 33
121186 CTGCACGAGA
121196 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
121229 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
**
121262 GAAACCAAAATCGCA
1 GAAATGAAAATCGCA
121277 TTGCGATTTC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.47, C:0.22, G:0.22, T:0.09
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:121312 original size:14 final size:14
Alignment explanation
Indices: 121293--121349 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
121283 TTTCATTTCG
121293 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
121307 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
121326 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
121340 CGTTGCGATT
1 CGTTGCGATT
121350 TTCATTTCTC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
16 3 0.08
17 3 0.08
19 10 0.28
ACGTcount: A:0.09, C:0.25, G:0.23, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:121324 original size:33 final size:33
Alignment explanation
Indices: 121277--121398 Score: 156
Period size: 33 Copynumber: 3.5 Consensus size: 33
121267 CAAAATCGCA
121277 TTGCGA-TTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
121309 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
*
121342 TTGCGATTTTCATTTCTCTCGTTGCGATAGTCCATCTCTCG
1 TTGCGATTTTCA-TT-TCGCGTTGCG--A-T---TCTCTCG
121383 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
121399 AACCAAAAGA
Statistics
Matches: 80, Mismatches: 1, Indels: 11
0.87 0.01 0.12
Matches are distributed among these distances:
32 6 0.08
33 38 0.47
34 2 0.03
35 9 0.11
37 1 0.01
38 1 0.01
39 2 0.03
40 2 0.03
41 19 0.24
ACGTcount: A:0.11, C:0.25, G:0.19, T:0.46
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:121360 original size:21 final size:21
Alignment explanation
Indices: 121334--121398 Score: 89
Period size: 21 Copynumber: 3.1 Consensus size: 21
121324 CGCGTTGCGA
121334 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
* *
121355 TTCTCTCGTTGCGATAGTCCA-
1 TTCTCTCGTTGCGAT-TTTCAT
121376 -TCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
121396 TTC
1 TTC
121399 AACCAAAAGA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
19 3 0.08
20 14 0.38
21 17 0.46
22 3 0.08
ACGTcount: A:0.11, C:0.26, G:0.15, T:0.48
Consensus pattern (21 bp):
TTCTCTCGTTGCGATTTTCAT
Found at i:123395 original size:14 final size:14
Alignment explanation
Indices: 123374--123432 Score: 64
Period size: 14 Copynumber: 3.9 Consensus size: 14
123364 ACGCGAAATG
123374 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
123388 AGAATCGCAATGCGAAACC
1 AAAATCGCAA--CG--A-C
123407 AAAATCGCAACGAC
1 AAAATCGCAACGAC
123421 AAAATCGCAACG
1 AAAATCGCAACG
123433 CGAAACCAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
14 22 0.58
15 1 0.03
16 2 0.05
17 2 0.05
18 1 0.03
19 10 0.26
ACGTcount: A:0.47, C:0.27, G:0.17, T:0.08
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:123403 original size:33 final size:33
Alignment explanation
Indices: 123317--123448 Score: 183
Period size: 33 Copynumber: 3.8 Consensus size: 33
123307 CACGAAACTT
123317 AAAATCGCAACGCGAAACCAAAATCGCAACGCGAAACC
1 AAAATCGCAACGCGAAACCAAAATCGCAA--CG--A-C
**
123355 AAAATCGCAACGCGAAATGAAAATCGCAACGAC
1 AAAATCGCAACGCGAAACCAAAATCGCAACGAC
* *
123388 AGAATCGCAATGCGAAACCAAAATCGCAACGAC
1 AAAATCGCAACGCGAAACCAAAATCGCAACGAC
123421 AAAATCGCAACGCGAAACCAAAATCGCA
1 AAAATCGCAACGCGAAACCAAAATCGCA
123449 TTGCGATTTT
Statistics
Matches: 86, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
33 56 0.65
34 1 0.01
36 2 0.02
38 27 0.31
ACGTcount: A:0.48, C:0.28, G:0.17, T:0.08
Consensus pattern (33 bp):
AAAATCGCAACGCGAAACCAAAATCGCAACGAC
Found at i:123446 original size:52 final size:51
Alignment explanation
Indices: 123317--123454 Score: 170
Period size: 52 Copynumber: 2.7 Consensus size: 51
123307 CACGAAACTT
*
123317 AAAATCGCAACGCGAAACCAAAATCGCAACGCGAAACCAAAATCGCAACGC
1 AAAATCGCAACGCGAAACCAAAATCGCAATGCGAAACCAAAATCGCAACGC
* * ** * *
123368 GAAAT-GAAAATCGCAACGACAGAATCGCAATGCGAAACCAAAATCGCAACGAC
1 AAAATCGCAACGCGAAAC--CAAAATCGCAATGCGAAACCAAAATCGCAACG-C
*
123421 AAAATCGCAACGCGAAACCAAAATCGCATTGCGA
1 AAAATCGCAACGCGAAACCAAAATCGCAATGCGA
123455 TTTTCATTTC
Statistics
Matches: 69, Mismatches: 14, Indels: 7
0.77 0.16 0.08
Matches are distributed among these distances:
50 8 0.12
51 4 0.06
52 44 0.64
53 5 0.07
54 8 0.12
ACGTcount: A:0.46, C:0.28, G:0.17, T:0.09
Consensus pattern (51 bp):
AAAATCGCAACGCGAAACCAAAATCGCAATGCGAAACCAAAATCGCAACGC
Found at i:123454 original size:19 final size:19
Alignment explanation
Indices: 123301--123448 Score: 163
Period size: 19 Copynumber: 8.3 Consensus size: 19
123291 TAGTTTACTT
* *
123301 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAAC-CAAAA
123321 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
123340 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
**
123359 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAACCAAAA
*
123378 TCGCAA--CG--A-CAGAA
1 TCGCAACGCGAAACCAAAA
*
123392 TCGCAATGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
123411 TCGCAA--CG--A-CAAAA
1 TCGCAACGCGAAACCAAAA
123425 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
123444 TCGCA
1 TCGCA
123449 TTGCGATTTT
Statistics
Matches: 111, Mismatches: 7, Indels: 21
0.80 0.05 0.15
Matches are distributed among these distances:
14 20 0.18
15 2 0.02
16 4 0.04
17 4 0.04
18 2 0.02
19 66 0.59
20 13 0.12
ACGTcount: A:0.47, C:0.28, G:0.16, T:0.09
Consensus pattern (19 bp):
TCGCAACGCGAAACCAAAA
Found at i:123466 original size:19 final size:19
Alignment explanation
Indices: 123444--123616 Score: 159
Period size: 19 Copynumber: 9.6 Consensus size: 19
123434 GAAACCAAAA
*
123444 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
123463 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
123477 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* *
123496 TCGCATTGCGA--TTC-TG
1 TCGCGTTGCGATTTTCATT
123512 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
**
123529 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATT
**
123548 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATT
* *
123567 TCTCGTTGCGATTCTCATT
1 TCGCGTTGCGATTTTCATT
*
123586 TCGCGTTGCGATTTTAAGTT
1 TCGCGTTGCGATTTTCA-TT
*
123606 TCGTGTTGCGA
1 TCGCGTTGCGA
123617 AAGTAAACTA
Statistics
Matches: 126, Mismatches: 17, Indels: 21
0.77 0.10 0.13
Matches are distributed among these distances:
14 17 0.13
16 8 0.06
17 8 0.06
19 81 0.64
20 12 0.10
ACGTcount: A:0.10, C:0.20, G:0.24, T:0.46
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:123485 original size:14 final size:14
Alignment explanation
Indices: 123466--123522 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
123456 TTTCATTTCG
123466 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
123480 CGTTGCGATTTTCATTT
1 CGTTGCGA--TTC-TCT
*
123497 CGCATTGCGATTCTGT
1 CG--TTGCGATTCTCT
123513 CGTTGCGATT
1 CGTTGCGATT
123523 TTCATTTCGC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 16 0.44
16 7 0.19
17 7 0.19
19 6 0.17
ACGTcount: A:0.11, C:0.23, G:0.23, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:123574 original size:38 final size:38
Alignment explanation
Indices: 123444--123616 Score: 168
Period size: 33 Copynumber: 4.8 Consensus size: 38
123434 GAAACCAAAA
*
123444 TCGCATTGCGATTTTCATTTCGCGTTGCGATTCTC---
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCATT
* *
123479 T--CGTTGCGATTTTCATTTCGCATTGCGA-T-TC-TG
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCATT
* **
123512 T--CGTTGCGATTTTCATTTCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCATT
** *
123548 TCGCGTTGCGATTTTGGTTTCTCGTTGCGATTCTCATT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCATT
* *
123586 TCGCGTTGCGATTTTAAGTTTCGTGTTGCGA
1 TCGCGTTGCGATTTTCA-TTTCGCGTTGCGA
123617 AAGTAAACTA
Statistics
Matches: 115, Mismatches: 15, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
31 2 0.02
32 1 0.01
33 52 0.45
34 1 0.01
35 2 0.02
36 2 0.02
38 44 0.38
39 11 0.10
ACGTcount: A:0.10, C:0.20, G:0.24, T:0.46
Consensus pattern (38 bp):
TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCATT
Found at i:125552 original size:14 final size:14
Alignment explanation
Indices: 125533--125568 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
125523 ATTGTTTAAT
125533 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
125547 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
125561 TGATTTGT
1 TGATTTGT
125569 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:125699 original size:19 final size:19
Alignment explanation
Indices: 125675--125772 Score: 127
Period size: 19 Copynumber: 5.4 Consensus size: 19
125665 AAAAATGACT
125675 ATCGCAATGCGGAAATG-AA
1 ATCGCAATGC-GAAATGAAA
125694 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
125713 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
125727 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
125746 ATCGCAATGCGGAAATGAAA
1 ATCGCAATGC-GAAATGAAA
125766 ATCGCAA
1 ATCGCAA
125773 CGAGAGAATC
Statistics
Matches: 70, Mismatches: 2, Indels: 13
0.82 0.02 0.15
Matches are distributed among these distances:
14 10 0.14
15 1 0.01
16 2 0.03
17 2 0.03
18 7 0.10
19 32 0.46
20 16 0.23
ACGTcount: A:0.45, C:0.17, G:0.23, T:0.14
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:125804 original size:53 final size:53
Alignment explanation
Indices: 125675--125791 Score: 211
Period size: 53 Copynumber: 2.2 Consensus size: 53
125665 AAAAATGACT
125675 ATCGCAATGCGGAAATG-AAATCGCAATGC-GAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGC-GAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
125727 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
125780 ATCGCAATGCGA
1 ATCGCAATGCGA
125792 TTTTCATTTC
Statistics
Matches: 63, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
51 6 0.10
52 22 0.35
53 35 0.56
ACGTcount: A:0.44, C:0.18, G:0.25, T:0.14
Consensus pattern (53 bp):
ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
Found at i:125809 original size:19 final size:19
Alignment explanation
Indices: 125781--125937 Score: 199
Period size: 19 Copynumber: 8.7 Consensus size: 19
125771 AACGAGAGAA
*
125781 TCGCAATGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
125800 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
125819 TCCGCATTGCGA--TTC-TC
1 T-CGCATTGCGATTTTCATT
125836 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
125853 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
125872 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
125891 TCCGCATTGCGATTTTCA--
1 T-CGCATTGCGATTTTCATT
*
125909 T-G--TTGGGATTTTCATT
1 TCGCATTGCGATTTTCATT
125925 TCGCATTGCGATT
1 TCGCATTGCGATT
125938 CTCTCGTTGC
Statistics
Matches: 121, Mismatches: 5, Indels: 24
0.81 0.03 0.16
Matches are distributed among these distances:
14 17 0.14
16 7 0.06
17 7 0.06
18 4 0.03
19 60 0.50
20 26 0.21
ACGTcount: A:0.15, C:0.22, G:0.18, T:0.45
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:125850 original size:53 final size:52
Alignment explanation
Indices: 125787--125951 Score: 214
Period size: 53 Copynumber: 3.1 Consensus size: 52
125777 AGAATCGCAA
125787 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTT-CGCATTGCGATTCTCTCGT
*
125840 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCAT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGA--TTC-TCT-CG--T
*
125898 TGCGATTTTCA--T-G--TTGGGATTTTCATTTCGCATTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGT
125945 TGCGATT
1 TGCGATT
125952 GTAATTTCTG
Statistics
Matches: 103, Mismatches: 3, Indels: 18
0.83 0.02 0.15
Matches are distributed among these distances:
47 8 0.08
49 2 0.02
50 2 0.02
51 3 0.03
52 10 0.10
53 57 0.55
54 3 0.03
55 3 0.03
56 3 0.03
58 12 0.12
ACGTcount: A:0.14, C:0.22, G:0.18, T:0.46
Consensus pattern (52 bp):
TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGT
Found at i:125868 original size:72 final size:72
Alignment explanation
Indices: 125781--125937 Score: 271
Period size: 72 Copynumber: 2.2 Consensus size: 72
125771 AACGAGAGAA
*
125781 TCGCAATGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTC-TCGTTGCGA
1 TCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCAT-GTTGCGA
125845 TTTTCATT
65 TTTTCATT
* *
125853 TCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTTTCATGTTGGGAT
1 TCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCATGTTGCGAT
125918 TTTCATT
66 TTTCATT
125925 TCGCATTGCGATT
1 TCGCATTGCGATT
125938 CTCTCGTTGC
Statistics
Matches: 81, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
72 80 0.99
73 1 0.01
ACGTcount: A:0.15, C:0.22, G:0.18, T:0.45
Consensus pattern (72 bp):
TCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCATGTTGCGAT
TTTCATT
Found at i:125959 original size:33 final size:33
Alignment explanation
Indices: 125805--125951 Score: 188
Period size: 33 Copynumber: 4.2 Consensus size: 33
125795 TCATTTCGCA
125805 TTGCGATTTTCATTTCCGCATTGCGATTCTCTCG
1 TTGCGATTTTCATTT-CGCATTGCGATTCTCTCG
*
125839 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCG
1 TTGCGATTTTCATTTCGCATTGCGA--TTC-TCTCG
*
125875 CATTGCGATTTTCATTTCCGCATTGCGATTTTCAT-G
1 --TTGCGATTTTCATTT-CGCATTGCGATTCTC-TCG
*
125911 TTGGGATTTTCATTTCGCATTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
125944 TTGCGATT
1 TTGCGATT
125952 GTAATTTCTG
Statistics
Matches: 99, Mismatches: 6, Indels: 17
0.81 0.05 0.14
Matches are distributed among these distances:
32 1 0.01
33 32 0.32
34 29 0.29
35 3 0.03
36 6 0.06
37 3 0.03
38 15 0.15
39 10 0.10
ACGTcount: A:0.14, C:0.22, G:0.18, T:0.46
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
Found at i:125966 original size:53 final size:53
Alignment explanation
Indices: 125805--125970 Score: 178
Period size: 53 Copynumber: 3.1 Consensus size: 53
125795 TCATTTCGCA
* * **
125805 TTGCGATTTTCATTTCCGCATTGCGATTCTCTCGTTGCGATTTTCATTTC-GCA
1 TTGCGATTTTCATTT-CGCATTGCGATTCTCTCGTTGCGATTGTAATTTCTGTG
* * ** *
125858 TTGCGATTTTCATTTCGCATTGCGATT-T-TCATTTCCGCATTGCGATTT-TCATG
1 TTGCGATTTTCATTTCGCATTGCGATTCTCTC-GTTGCG-ATTGTAATTTCT-GTG
*
125911 TTGGGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTGTAATTTCTGTG
1 TTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTGTAATTTCTGTG
125964 TTGCGAT
1 TTGCGAT
125971 AGTCAAATGC
Statistics
Matches: 91, Mismatches: 15, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
50 2 0.02
51 5 0.05
52 19 0.21
53 57 0.63
54 6 0.07
55 2 0.02
ACGTcount: A:0.14, C:0.20, G:0.19, T:0.46
Consensus pattern (53 bp):
TTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTGTAATTTCTGTG
Found at i:128246 original size:12 final size:12
Alignment explanation
Indices: 128229--128253 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
128219 TCTTCGGGGA
128229 CTTTTTCTTCTT
1 CTTTTTCTTCTT
128241 CTTTTTCTTCTT
1 CTTTTTCTTCTT
128253 C
1 C
128254 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:128462 original size:24 final size:24
Alignment explanation
Indices: 128428--128474 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
128418 CTGAAACATC
128428 ATCAAAATCCGTG-TATTGACCAAT
1 ATCAAAATCCG-GATATTGACCAAT
*
128452 ATCAAAGTCCGGATATTGACCAA
1 ATCAAAATCCGGATATTGACCAA
128475 GACCAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGGATATTGACCAAT
Found at i:129195 original size:20 final size:20
Alignment explanation
Indices: 129167--129395 Score: 253
Period size: 20 Copynumber: 11.4 Consensus size: 20
129157 AAATTTCAGT
* * *
129167 GTTGTGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCGC
**
129187 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCGC
* *
129207 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCGC
**
129227 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCGC
*
129247 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
*
129267 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
* *
129287 ATTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
* *
129307 GTTGCGATTTACGGATACAC
1 GTTGCGATTTACGGATTCGC
* *
129327 GTTGCGGTTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
*
129347 GTTGCGATTTATGTG-TTCGC
1 GTTGCGATTTACG-GATTCGC
* **
129367 GTTGCGATTTTCATATTCGC
1 GTTGCGATTTACGGATTCGC
129387 GTTGCGATT
1 GTTGCGATT
129396 CTGGAAAATC
Statistics
Matches: 185, Mismatches: 22, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
20 184 0.99
21 1 0.01
ACGTcount: A:0.19, C:0.18, G:0.26, T:0.37
Consensus pattern (20 bp):
GTTGCGATTTACGGATTCGC
Found at i:138776 original size:29 final size:29
Alignment explanation
Indices: 138686--138776 Score: 69
Period size: 29 Copynumber: 3.0 Consensus size: 29
138676 TAATATAACA
* * * *
138686 TTATATTTTTAATATTATAATAAAACAATCAA
1 TTATA-TTTTAATAATAT-ATAATA-AATTAT
* *
138718 TTATATTATAATAATATA-AGAT-ATTATAT
1 TTATATTTTAATAATATATA-ATAAAT-TAT
138747 TTATATTTTAATAATATATAATAAATTAT
1 TTATATTTTAATAATATATAATAAATTAT
138776 T
1 T
138777 AATAAAATTT
Statistics
Matches: 47, Mismatches: 8, Indels: 11
0.71 0.12 0.17
Matches are distributed among these distances:
28 2 0.04
29 25 0.53
30 5 0.11
31 10 0.21
32 5 0.11
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.48
Consensus pattern (29 bp):
TTATATTTTAATAATATATAATAAATTAT
Found at i:138913 original size:23 final size:23
Alignment explanation
Indices: 138887--138931 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
138877 AATAATATTT
138887 TAATAAAGATATTTAAAATATAC
1 TAATAAAGATATTTAAAATATAC
* * *
138910 TAATTAATATTTTTAAAATATA
1 TAATAAAGATATTTAAAATATA
138932 ATATAACACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (23 bp):
TAATAAAGATATTTAAAATATAC
Found at i:139271 original size:13 final size:14
Alignment explanation
Indices: 139197--139269 Score: 56
Period size: 14 Copynumber: 4.7 Consensus size: 14
139187 CAAACATAAT
139197 AAAATATTTTTCAA
1 AAAATATTTTTCAA
* *
139211 AATATATTTTTTAAA
1 AAAATA-TTTTTCAA
*
139226 AAATATAATTCATTTTACGA
1 AAA-AT-A-T--TTTT-CAA
139246 AAAATATTTTTCAA
1 AAAATATTTTTCAA
139260 AAAATATTTT
1 AAAATATTTT
139270 CAGTGAAACA
Statistics
Matches: 47, Mismatches: 6, Indels: 12
0.72 0.09 0.18
Matches are distributed among these distances:
14 17 0.36
15 13 0.28
16 2 0.04
17 4 0.09
18 1 0.02
19 6 0.13
20 4 0.09
ACGTcount: A:0.48, C:0.05, G:0.01, T:0.45
Consensus pattern (14 bp):
AAAATATTTTTCAA
Found at i:139930 original size:55 final size:54
Alignment explanation
Indices: 139825--139932 Score: 182
Period size: 55 Copynumber: 2.0 Consensus size: 54
139815 GGAATCTAAA
*
139825 AATGTAATAAGTTGATCCACAAAAAATATAAAATGTAATAAATTTGTCAAAAAG
1 AATGTAATAAGTTGATCCACAAAAAATATAAAATGTAATAAAGTTGTCAAAAAG
139879 AATGTAATAAGTTGATCCACAAAAAAATATAAAATGTAAT-AAGTTGATCAAAAA
1 AATGTAATAAGTTGATCCAC-AAAAAATATAAAATGTAATAAAGTTG-TCAAAAA
139933 AAATATAGAA
Statistics
Matches: 51, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
54 25 0.49
55 26 0.51
ACGTcount: A:0.55, C:0.07, G:0.11, T:0.27
Consensus pattern (54 bp):
AATGTAATAAGTTGATCCACAAAAAATATAAAATGTAATAAAGTTGTCAAAAAG
Found at i:139935 original size:30 final size:32
Alignment explanation
Indices: 139879--139939 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
139869 TGTCAAAAAG
139879 AATGTAATAAGTTGATCCACAAAAAAATATAA
1 AATGTAATAAGTTGATCCACAAAAAAATATAA
139911 AATGTAATAAGTTGAT-CA-AAAAAAATATA
1 AATGTAATAAGTTGATCCACAAAAAAATATA
139940 GAATATAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 11 0.38
31 2 0.07
32 16 0.55
ACGTcount: A:0.57, C:0.07, G:0.10, T:0.26
Consensus pattern (32 bp):
AATGTAATAAGTTGATCCACAAAAAAATATAA
Found at i:143538 original size:14 final size:14
Alignment explanation
Indices: 143521--143576 Score: 53
Period size: 14 Copynumber: 4.1 Consensus size: 14
143511 TTTTTTATGA
*
143521 TTTTTTGTTTTTG-
1 TTTTTTCTTTTTGT
*
143534 TTTTTT-ATTTTGT
1 TTTTTTCTTTTTGT
* *
143547 TATTTTCTTTTTAT
1 TTTTTTCTTTTTGT
143561 TTTTTTCTTCTTTGT
1 TTTTTTCTT-TTTGT
143576 T
1 T
143577 ATATTATTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
12 5 0.15
13 11 0.32
14 13 0.38
15 5 0.15
ACGTcount: A:0.05, C:0.05, G:0.07, T:0.82
Consensus pattern (14 bp):
TTTTTTCTTTTTGT
Found at i:143544 original size:19 final size:20
Alignment explanation
Indices: 143522--143564 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
143512 TTTTTATGAT
143522 TTTTTGTT-TTTGT-TTTTTA
1 TTTTTGTTATTT-TCTTTTTA
143541 -TTTTGTTATTTTCTTTTTA
1 TTTTTGTTATTTTCTTTTTA
143560 TTTTT
1 TTTTT
143565 TTCTTCTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.07, C:0.02, G:0.07, T:0.84
Consensus pattern (20 bp):
TTTTTGTTATTTTCTTTTTA
Found at i:143769 original size:21 final size:21
Alignment explanation
Indices: 143743--143792 Score: 100
Period size: 21 Copynumber: 2.4 Consensus size: 21
143733 TATGAAATTG
143743 ATACATGCACCAGGGTCCATA
1 ATACATGCACCAGGGTCCATA
143764 ATACATGCACCAGGGTCCATA
1 ATACATGCACCAGGGTCCATA
143785 ATACATGC
1 ATACATGC
143793 TTCTTTGGAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.34, C:0.28, G:0.18, T:0.20
Consensus pattern (21 bp):
ATACATGCACCAGGGTCCATA
Found at i:150931 original size:21 final size:21
Alignment explanation
Indices: 150880--150932 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
150870 ATTATGACTA
*
150880 TCGCAATGCGATTTTCCAATT
1 TCGCAATGCGATTTTCCAACT
** *
150901 TCGCGTTGCGATTTTCCCACT
1 TCGCAATGCGATTTTCCAACT
150922 TCGCAATGCGA
1 TCGCAATGCGA
150933 ATAAGTAAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.19, C:0.28, G:0.19, T:0.34
Consensus pattern (21 bp):
TCGCAATGCGATTTTCCAACT
Found at i:150947 original size:20 final size:21
Alignment explanation
Indices: 150922--150973 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
150912 TTTTCCCACT
*
150922 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
**
150942 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTAAGAAAA
150963 TCGCAATGCGA
1 TCGCAATGCGA
150974 TACTGACTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.21
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:150965 original size:21 final size:21
Alignment explanation
Indices: 150922--151011 Score: 87
Period size: 20 Copynumber: 4.4 Consensus size: 21
150912 TTTTCCCACT
** *
150922 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTTGGAAAA
150942 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTTGGAAAA
* **
150963 TCGCAATGCG-ATACT-GACTA
1 TCGCAATGCGAAT-TTGGAAAA
150983 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTTGGAAAA
*
151004 TCGAAATG
1 TCGCAATG
151012 GGATACTGAC
Statistics
Matches: 56, Mismatches: 10, Indels: 7
0.77 0.14 0.10
Matches are distributed among these distances:
20 28 0.50
21 28 0.50
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (21 bp):
TCGCAATGCGAATTTGGAAAA
Found at i:150967 original size:41 final size:41
Alignment explanation
Indices: 150940--151034 Score: 154
Period size: 41 Copynumber: 2.3 Consensus size: 41
150930 CGAATAAGTA
150940 AATCGCAATGCGAATTTGGAAAATCGCAATGCGATACTGAC
1 AATCGCAATGCGAATTTGGAAAATCGCAATGCGATACTGAC
* * *
150981 TATCGCAATGCGAATTTGGAAAATCGAAATGGGATACTGAC
1 AATCGCAATGCGAATTTGGAAAATCGCAATGCGATACTGAC
*
151022 TATCGCAATGCGA
1 AATCGCAATGCGA
151035 TTTTCCTAAT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.23
Consensus pattern (41 bp):
AATCGCAATGCGAATTTGGAAAATCGCAATGCGATACTGAC
Found at i:150987 original size:20 final size:20
Alignment explanation
Indices: 150962--151035 Score: 78
Period size: 20 Copynumber: 3.6 Consensus size: 20
150952 AATTTGGAAA
150962 ATCGCAATGCGATACTGACT
1 ATCGCAATGCGATACTGACT
* **
150982 ATCGCAATGCGA-ATTTGGAAA
1 ATCGCAATGCGATA-CT-GACT
* *
151003 ATCGAAATGGGATACTGACT
1 ATCGCAATGCGATACTGACT
151023 ATCGCAATGCGAT
1 ATCGCAATGCGAT
151036 TTTCCTAATT
Statistics
Matches: 41, Mismatches: 10, Indels: 6
0.72 0.18 0.11
Matches are distributed among these distances:
19 1 0.02
20 26 0.63
21 13 0.32
22 1 0.02
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (20 bp):
ATCGCAATGCGATACTGACT
Found at i:151065 original size:20 final size:20
Alignment explanation
Indices: 151024--151116 Score: 105
Period size: 20 Copynumber: 4.5 Consensus size: 20
151014 ATACTGACTA
* *
151024 TCGCAATGCGATTTTCCTAAT
1 TCGCATTGCGA-TTTACTAAT
151045 TCGCATTGCGATTTACTAAT
1 TCGCATTGCGATTTACTAAT
* *
151065 TCGCGTTGTGATTTACTAAT
1 TCGCATTGCGATTTACTAAT
* *
151085 TCGCGTTGCGATTTTCATAAT
1 TCGCATTGCGATTTAC-TAAT
*
151106 TCGCAATGCGA
1 TCGCATTGCGA
151117 ATACGTAAAT
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
20 40 0.63
21 23 0.37
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.39
Consensus pattern (20 bp):
TCGCATTGCGATTTACTAAT
Found at i:151131 original size:20 final size:20
Alignment explanation
Indices: 151106--151217 Score: 120
Period size: 20 Copynumber: 5.5 Consensus size: 20
151096 TTTTCATAAT
151106 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
*
151126 TCGCAACGCGAATTA-GTAAA
1 TCGCAATGCGAA-TACGTAAA
* * *
151146 TCGCAACGCGAATTAGGAAAA
1 TCGCAATGCGAA-TACGTAAA
*
151167 TCACAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
* *
151187 TCGCAATGCGAAT-CTTACTA
1 TCGCAATGCGAATACGTA-AA
151207 TCGCAATGCGA
1 TCGCAATGCGA
151218 TTTACATAGC
Statistics
Matches: 80, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
19 3 0.04
20 61 0.76
21 16 0.20
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.21
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:151186 original size:41 final size:41
Alignment explanation
Indices: 151106--151199 Score: 120
Period size: 41 Copynumber: 2.3 Consensus size: 41
151096 TTTTCATAAT
* *
151106 TCGCAATGCGAA-TACGTAAATCGCAACGCGAATTAGTAAA
1 TCGCAATGCGAATTACGAAAATCACAACGCGAATTAGTAAA
* * *
151146 TCGCAACGCGAATTAGGAAAATCACAATGCGAA-TACGTAAA
1 TCGCAATGCGAATTACGAAAATCACAACGCGAATTA-GTAAA
151187 TCGCAATGCGAAT
1 TCGCAATGCGAAT
151200 CTTACTATCG
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
40 13 0.28
41 33 0.72
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.19
Consensus pattern (41 bp):
TCGCAATGCGAATTACGAAAATCACAACGCGAATTAGTAAA
Found at i:151769 original size:19 final size:19
Alignment explanation
Indices: 151731--151797 Score: 80
Period size: 19 Copynumber: 3.5 Consensus size: 19
151721 TTCGAGAATG
151731 AAAATCGCAACGCGGAAATA
1 AAAATCGCAACGC-GAAATA
**
151751 ACTATCGCAACGCGAAATA
1 AAAATCGCAACGCGAAATA
* **
151770 AAAATCGTAACGCGAAACC
1 AAAATCGCAACGCGAAATA
151789 AAAATCGCA
1 AAAATCGCA
151798 TTGCGATTTT
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
19 28 0.72
20 11 0.28
ACGTcount: A:0.48, C:0.24, G:0.16, T:0.12
Consensus pattern (19 bp):
AAAATCGCAACGCGAAATA
Found at i:151834 original size:14 final size:14
Alignment explanation
Indices: 151815--151870 Score: 58
Period size: 14 Copynumber: 3.6 Consensus size: 14
151805 TTTCATTTCG
151815 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
151829 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
151848 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
151862 CGTTGCGAT
1 CGTTGCGAT
151871 AGTCATTTTC
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
14 19 0.54
16 3 0.09
17 3 0.09
19 10 0.29
ACGTcount: A:0.09, C:0.25, G:0.23, T:0.43
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:151840 original size:33 final size:33
Alignment explanation
Indices: 151798--151894 Score: 167
Period size: 33 Copynumber: 2.9 Consensus size: 33
151788 CAAAATCGCA
151798 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
151831 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
**
151864 TTGCGATAGTCATTTTCGCGTTGCGATTCTC
1 TTGCGATTTTCA-TTTCGCGTTGCGATTCTC
151895 ATTATCTCGT
Statistics
Matches: 61, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
33 43 0.70
34 18 0.30
ACGTcount: A:0.10, C:0.24, G:0.22, T:0.44
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:151911 original size:20 final size:20
Alignment explanation
Indices: 151859--151917 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
151849 GTTGCGATTC
** *
151859 TCTCGTTGCGATAGTCATTT
1 TCTCGTTGCGATTCTCATTA
*
151879 TCGCGTTGCGATTCTCATTA
1 TCTCGTTGCGATTCTCATTA
*
151899 TCTCGTTGCGATTTTCATT
1 TCTCGTTGCGATTCTCATT
151918 TCAACCAAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.14, C:0.22, G:0.19, T:0.46
Consensus pattern (20 bp):
TCTCGTTGCGATTCTCATTA
Found at i:154012 original size:21 final size:21
Alignment explanation
Indices: 153988--154054 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
153978 TCATTCCTCG
153988 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
154009 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
154030 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
154051 AGAG
1 AGAG
154055 CCCGATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:155386 original size:14 final size:14
Alignment explanation
Indices: 155367--155402 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
155357 ATTGTTTAAT
*
155367 TGATTTGTAAGAGG
1 TGATTTGTAAAAGG
*
155381 TGATTTGTAAAAGT
1 TGATTTGTAAAAGG
155395 TGATTTGT
1 TGATTTGT
155403 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.28, C:0.00, G:0.28, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGG
Found at i:155561 original size:19 final size:19
Alignment explanation
Indices: 155509--155571 Score: 64
Period size: 19 Copynumber: 3.6 Consensus size: 19
155499 AGTATTATCT
*
155509 CAATGCGAAATGAAGATCG
1 CAATGCGAAATGAAAATCG
*
155528 CAA--CG--A-GAGAATCG
1 CAATGCGAAATGAAAATCG
155542 CAATGCGAAATGAAAATCG
1 CAATGCGAAATGAAAATCG
*
155561 CAACGCGAAAT
1 CAATGCGAAAT
155572 TAAATTCGCG
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
14 9 0.26
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 20 0.57
ACGTcount: A:0.44, C:0.19, G:0.24, T:0.13
Consensus pattern (19 bp):
CAATGCGAAATGAAAATCG
Found at i:155598 original size:19 final size:19
Alignment explanation
Indices: 155576--155674 Score: 74
Period size: 19 Copynumber: 5.7 Consensus size: 19
155566 CGAAATTAAA
*
155576 TTCGCGTTGCGATTTTCAT
1 TTCGCATTGCGATTTTCAT
*
155595 TTCGCATTGCGA--TTC-C
1 TTCGCATTGCGATTTTCAT
*
155611 CTCG--TTGCGATTTTCAT
1 TTCGCATTGCGATTTTCAT
*
155628 TTCGCATTGCGA-----AA
1 TTCGCATTGCGATTTTCAT
*
155642 TTCGCGTTGCGATTTTCAT
1 TTCGCATTGCGATTTTCAT
*
155661 TTCGTATTGCGATT
1 TTCGCATTGCGATT
155675 CTCTCATTGC
Statistics
Matches: 60, Mismatches: 10, Indels: 20
0.67 0.11 0.22
Matches are distributed among these distances:
14 18 0.30
16 6 0.10
17 6 0.10
19 30 0.50
ACGTcount: A:0.14, C:0.22, G:0.20, T:0.43
Consensus pattern (19 bp):
TTCGCATTGCGATTTTCAT
Found at i:155622 original size:33 final size:32
Alignment explanation
Indices: 155580--155687 Score: 146
Period size: 33 Copynumber: 3.3 Consensus size: 32
155570 ATTAAATTCG
155580 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATT-CCT
*
155613 CGTTGCGATTTTCATTTCGCATTGCGAAATT-CG
1 CGTTGCGATTTTCATTTCGCATTGCG--ATTCCT
*
155646 CGTTGCGATTTTCATTTCGTATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTC-CT
*
155679 CATTGCGAT
1 CGTTGCGAT
155688 AGTAATTTCC
Statistics
Matches: 67, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
31 3 0.04
33 61 0.91
35 3 0.04
ACGTcount: A:0.15, C:0.23, G:0.19, T:0.43
Consensus pattern (32 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCCT
Found at i:155696 original size:66 final size:67
Alignment explanation
Indices: 155573--155706 Score: 198
Period size: 66 Copynumber: 2.0 Consensus size: 67
155563 ACGCGAAATT
* ** *
155573 AAATTCGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTT-CGCATTG
1 AAATTCGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCATTGCGATAGTAATTTCCGCATTG
155637 CG
66 CG
* * *
155639 AAATTCGCGTTGCGATTTTCATTTCGTATTGCGATTCTCTCATTGCGATAGTAATTTCCGCGTTG
1 AAATTCGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCATTGCGATAGTAATTTCCGCATTG
155704 CG
66 CG
155706 A
1 A
155707 TAGACATTAA
Statistics
Matches: 60, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
66 51 0.85
67 9 0.15
ACGTcount: A:0.17, C:0.22, G:0.20, T:0.40
Consensus pattern (67 bp):
AAATTCGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCATTGCGATAGTAATTTCCGCATTG
CG
Found at i:157996 original size:12 final size:12
Alignment explanation
Indices: 157979--158003 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
157969 TCTTCGGGGA
157979 CTTTTTCTTCTT
1 CTTTTTCTTCTT
157991 CTTTTTCTTCTT
1 CTTTTTCTTCTT
158003 C
1 C
158004 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:158217 original size:24 final size:24
Alignment explanation
Indices: 158190--158236 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
158180 CAAAATCCGA
*
158190 GTATTGACCAATATCAAAGTTCGG
1 GTATTGACCAAGATCAAAGTTCGG
*
158214 GTATTGACCAAGATCAAATTTCG
1 GTATTGACCAAGATCAAAGTTCG
158237 AATACTGACT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (24 bp):
GTATTGACCAAGATCAAAGTTCGG
Found at i:158245 original size:24 final size:24
Alignment explanation
Indices: 158194--158245 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
158184 ATCCGAGTAT
* ** *
158194 TGACCAATATCAAAGTTCGGGTAT
1 TGACCAAGATCAAAGTTCGAATAC
*
158218 TGACCAAGATCAAATTTCGAATAC
1 TGACCAAGATCAAAGTTCGAATAC
158242 TGAC
1 TGAC
158246 TAGTTCTCAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (24 bp):
TGACCAAGATCAAAGTTCGAATAC
Found at i:159141 original size:20 final size:20
Alignment explanation
Indices: 159052--159143 Score: 76
Period size: 20 Copynumber: 4.5 Consensus size: 20
159042 TGCGAATTTG
* *
159052 GAAAATCGCAATGCGATACT
1 GAAAATCGCAACGAGATACT
** *
159072 GACTATCGCAACGAGATAAT
1 GAAAATCGCAACGAGATACT
* *
159092 ACAAAATCGCAACGAGATTCT
1 -GAAAATCGCAACGAGATACT
*** *
159113 GACTTTCGCAACGAGATTCT
1 GAAAATCGCAACGAGATACT
159133 GAAAATCGCAA
1 GAAAATCGCAA
159144 TCATCTTCAA
Statistics
Matches: 54, Mismatches: 17, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
20 39 0.72
21 15 0.28
ACGTcount: A:0.39, C:0.22, G:0.18, T:0.21
Consensus pattern (20 bp):
GAAAATCGCAACGAGATACT
Found at i:159382 original size:20 final size:20
Alignment explanation
Indices: 159357--159450 Score: 100
Period size: 20 Copynumber: 4.7 Consensus size: 20
159347 CAACGGGGAA
*
159357 ATCGCAACGCGAAAATGGTT
1 ATCGCAACGCGAAAATGGCT
159377 ATCGCAACGCGAAAATGGCT
1 ATCGCAACGCGAAAATGGCT
* ** ***
159397 ATCCCAATTCG-AAATGAAAA
1 ATCGCAACGCGAAAATG-GCT
159417 ATCGCAACGCGAAAATGGCT
1 ATCGCAACGCGAAAATGGCT
*
159437 ATCGCAATGCGAAA
1 ATCGCAACGCGAAA
159451 TGAAAATCAT
Statistics
Matches: 58, Mismatches: 14, Indels: 4
0.76 0.18 0.05
Matches are distributed among these distances:
19 5 0.09
20 48 0.83
21 5 0.09
ACGTcount: A:0.39, C:0.22, G:0.21, T:0.17
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGGCT
Found at i:159421 original size:40 final size:40
Alignment explanation
Indices: 159377--159456 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
159367 GAAAATGGTT
*
159377 ATCGCAACGCGAAAATGGCTATCCCAATTCGAAATGAAAA
1 ATCGCAACGCGAAAATGGCTATCCCAATGCGAAATGAAAA
*
159417 ATCGCAACGCGAAAATGGCTATCGCAATGCGAAATGAAAA
1 ATCGCAACGCGAAAATGGCTATCCCAATGCGAAATGAAAA
159457 TCATATTGCG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.42, C:0.21, G:0.20, T:0.16
Consensus pattern (40 bp):
ATCGCAACGCGAAAATGGCTATCCCAATGCGAAATGAAAA
Found at i:159498 original size:19 final size:19
Alignment explanation
Indices: 159476--159520 Score: 90
Period size: 19 Copynumber: 2.4 Consensus size: 19
159466 GATTTTCTCG
159476 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
159495 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
159514 TTGCGAT
1 TTGCGAT
159521 AGTCAGTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.16, C:0.20, G:0.18, T:0.47
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:161610 original size:19 final size:18
Alignment explanation
Indices: 161546--161678 Score: 84
Period size: 20 Copynumber: 7.5 Consensus size: 18
161536 ACGAAACTTA
*
161546 AAATCGCAACGCGAAAATG
1 AAATCGCAATGCG-AAATG
* *
161565 ACTATCGCAACGCGGAAATGG
1 A-AATCGCAATGC-GAAAT-G
**
161586 CTATCGCAATGCGAAATG
1 AAATCGCAATGCGAAATG
*
161604 CAAATCGCAA--CGACA--
1 -AAATCGCAATGCGAAATG
*
161619 AAATCGCAATGTGAAATG
1 AAATCGCAATGCGAAATG
*
161637 AAAATCGCAA--CGACA--
1 -AAATCGCAATGCGAAATG
161652 AAATCGCAATGCGAAATG
1 AAATCGCAATGCGAAATG
161670 AAATCGCAA
1 AAATCGCAA
161679 CGACAAAATC
Statistics
Matches: 90, Mismatches: 11, Indels: 27
0.70 0.09 0.21
Matches are distributed among these distances:
14 18 0.20
16 7 0.08
17 7 0.08
18 10 0.11
19 22 0.24
20 24 0.27
21 2 0.02
ACGTcount: A:0.44, C:0.22, G:0.20, T:0.14
Consensus pattern (18 bp):
AAATCGCAATGCGAAATG
Found at i:161624 original size:14 final size:14
Alignment explanation
Indices: 161605--161694 Score: 72
Period size: 14 Copynumber: 5.8 Consensus size: 14
161595 TGCGAAATGC
161605 AAATCGCAACGACA
1 AAATCGCAACGACA
* *
161619 AAATCGCAATGTGAAATGA
1 AAATCGCAA--CG--A-CA
161638 AAATCGCAACGACA
1 AAATCGCAACGACA
*
161652 AAATCGCAATGCGAAA
1 AAATCGCAA--CGACA
161668 TGAAATCGCAACGACA
1 --AAATCGCAACGACA
161684 AAATCGCAACG
1 AAATCGCAACG
161695 CGAAACACAA
Statistics
Matches: 61, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
14 30 0.49
15 1 0.02
16 9 0.15
17 1 0.02
18 10 0.16
19 10 0.16
ACGTcount: A:0.48, C:0.22, G:0.18, T:0.12
Consensus pattern (14 bp):
AAATCGCAACGACA
Found at i:161635 original size:33 final size:33
Alignment explanation
Indices: 161588--161710 Score: 194
Period size: 33 Copynumber: 3.8 Consensus size: 33
161578 GGAAATGGCT
161588 ATCGCAATGCGAAATGCAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGCAAATCGCAACGACAAA
* *
161621 ATCGCAATGTGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGCAAATCGCAACGACAAA
161654 ATCGCAATGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAATGCGAAATGCAAATCGCAACGACAAA
* **
161686 ATCGCAACGCGAAACACAAATCGCA
1 ATCGCAATGCGAAATGCAAATCGCA
161711 TTGCGATTTT
Statistics
Matches: 83, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
32 29 0.35
33 54 0.65
ACGTcount: A:0.46, C:0.24, G:0.18, T:0.12
Consensus pattern (33 bp):
ATCGCAATGCGAAATGCAAATCGCAACGACAAA
Found at i:161707 original size:65 final size:66
Alignment explanation
Indices: 161588--161710 Score: 196
Period size: 65 Copynumber: 1.9 Consensus size: 66
161578 GGAAATGGCT
* * *
161588 ATCGCAATGCGAAATGCAAATCGCAACGACAAAATCGCAATGTGAAATGAAAATCGCAACGACAA
1 ATCGCAATGCGAAATGCAAATCGCAACGACAAAATCGCAACGCGAAATCAAAATCGCAACGACAA
161653 A
66 A
161654 ATCGCAATGCGAAATG-AAATCGCAACGACAAAATCGCAACGCGAAA-CACAAATCGCA
1 ATCGCAATGCGAAATGCAAATCGCAACGACAAAATCGCAACGCGAAATCA-AAATCGCA
161711 TTGCGATTTT
Statistics
Matches: 53, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
64 1 0.02
65 36 0.68
66 16 0.30
ACGTcount: A:0.46, C:0.24, G:0.18, T:0.12
Consensus pattern (66 bp):
ATCGCAATGCGAAATGCAAATCGCAACGACAAAATCGCAACGCGAAATCAAAATCGCAACGACAA
A
Found at i:161728 original size:19 final size:19
Alignment explanation
Indices: 161706--161802 Score: 97
Period size: 19 Copynumber: 5.6 Consensus size: 19
161696 GAAACACAAA
161706 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
161725 TCGCGTTGCGATTTT-A--
1 TCGCATTGCGATTTTCATT
161741 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
* *
161758 ACGCATTGCGA-TTT--TG
1 TCGCATTGCGATTTTCATT
161774 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
161791 TCGCATTGCGAT
1 TCGCATTGCGAT
161803 AGCCATTTCC
Statistics
Matches: 63, Mismatches: 5, Indels: 20
0.72 0.06 0.23
Matches are distributed among these distances:
14 16 0.25
15 4 0.06
16 6 0.10
17 6 0.10
18 4 0.06
19 27 0.43
ACGTcount: A:0.14, C:0.20, G:0.21, T:0.45
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:161747 original size:14 final size:14
Alignment explanation
Indices: 161728--161786 Score: 64
Period size: 14 Copynumber: 3.9 Consensus size: 14
161718 TTTCATTTCG
161728 CGTTGCGATTTTAT
1 CGTTGCGATTTTAT
161742 CGTTGCGATTTTCATT
1 CGTTGCGATTTT-A-T
*
161758 ACGCATTGCGATTTTGT
1 -CG--TTGCGATTTTAT
161775 CGTTGCGATTTT
1 CGTTGCGATTTT
161787 CATTTCGCAT
Statistics
Matches: 39, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
14 22 0.56
15 1 0.03
16 3 0.08
17 3 0.08
19 10 0.26
ACGTcount: A:0.14, C:0.17, G:0.22, T:0.47
Consensus pattern (14 bp):
CGTTGCGATTTTAT
Found at i:161753 original size:33 final size:33
Alignment explanation
Indices: 161711--161802 Score: 157
Period size: 33 Copynumber: 2.8 Consensus size: 33
161701 ACAAATCGCA
*
161711 TTGCGATTTTCATTTCGCGTTGCGATTTTATCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTATCG
* *
161744 TTGCGATTTTCATTACGCATTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTATCG
161777 TTGCGATTTTCATTTCGCATTGCGAT
1 TTGCGATTTTCATTTCGCATTGCGAT
161803 AGCCATTTCC
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 55 1.00
ACGTcount: A:0.14, C:0.18, G:0.21, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTATCG
Found at i:161809 original size:19 final size:20
Alignment explanation
Indices: 161787--161830 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
161777 TTGCGATTTT
161787 CATTT-CGCATTGCGATAGC
1 CATTTCCGCATTGCGATAGC
** *
161806 CATTTCCGTGTTGCGATAGT
1 CATTTCCGCATTGCGATAGC
161826 CATTT
1 CATTT
161831 TCGTGTTGCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.18, C:0.23, G:0.20, T:0.39
Consensus pattern (20 bp):
CATTTCCGCATTGCGATAGC
Found at i:161821 original size:20 final size:20
Alignment explanation
Indices: 161796--161841 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
161786 TCATTTCGCA
161796 TTGCGATAGCCATTTCCGTG
1 TTGCGATAGCCATTTCCGTG
* *
161816 TTGCGATAGTCATTTTCGTG
1 TTGCGATAGCCATTTCCGTG
161836 TTGCGA
1 TTGCGA
161842 AAGTAAACTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.15, C:0.20, G:0.26, T:0.39
Consensus pattern (20 bp):
TTGCGATAGCCATTTCCGTG
Found at i:162349 original size:18 final size:18
Alignment explanation
Indices: 162323--162368 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
162313 GTCGATCAGA
*
162323 TGATGGCTCTGAGTGAGG
1 TGATGGCTCTGAGCGAGG
* *
162341 TGATAGCTCTGGGCGAGG
1 TGATGGCTCTGAGCGAGG
162359 TGATGGCTCT
1 TGATGGCTCT
162369 CGAAGTGGAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.15, C:0.15, G:0.41, T:0.28
Consensus pattern (18 bp):
TGATGGCTCTGAGCGAGG
Found at i:163729 original size:20 final size:20
Alignment explanation
Indices: 163687--163743 Score: 51
Period size: 20 Copynumber: 2.9 Consensus size: 20
163677 AATAGTTTCT
** **
163687 GAAAATGAAAATCGCAACAC
1 GAAAATGACTATCGCAATTC
*
163707 GAAAATGACTATTGCAATTC
1 GAAAATGACTATCGCAATTC
**
163727 GAATTTGACTATCGCAA
1 GAAAATGACTATCGCAA
163744 CGAGAGAATC
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.44, C:0.18, G:0.16, T:0.23
Consensus pattern (20 bp):
GAAAATGACTATCGCAATTC
Found at i:164268 original size:20 final size:20
Alignment explanation
Indices: 164243--164291 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
164233 ATGTATTATT
164243 GCGTTGCGAAAGTCAGAATC
1 GCGTTGCGAAAGTCAGAATC
* *
164263 GCGTTGTGAAAGTCAGTATC
1 GCGTTGCGAAAGTCAGAATC
*
164283 TCGTTGCGA
1 GCGTTGCGA
164292 TTTTGTATTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (20 bp):
GCGTTGCGAAAGTCAGAATC
Found at i:164325 original size:61 final size:61
Alignment explanation
Indices: 164219--164356 Score: 186
Period size: 61 Copynumber: 2.3 Consensus size: 61
164209 CGCTTTGAAA
* * * * *
164219 ATCGCATTGCGATTATGTATTATTGCGTTGCGAAAGTCAGAATCGCGTTGTGAAAGTCAGT
1 ATCGCATTGCGATTTTGTATTATTGCATTGCGAAAGTAAGAATCGCATTGCGAAAGTCAGT
* * * * *
164280 ATCTCGTTGCGATTTTGTATTATTGCATTGCGATAGTAAGTATCGCATTGCGATAGTCAGT
1 ATCGCATTGCGATTTTGTATTATTGCATTGCGAAAGTAAGAATCGCATTGCGAAAGTCAGT
164341 ATCGCATTGCGATTTT
1 ATCGCATTGCGATTTT
164357 CCCAATTCGC
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
61 65 1.00
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (61 bp):
ATCGCATTGCGATTTTGTATTATTGCATTGCGAAAGTAAGAATCGCATTGCGAAAGTCAGT
Found at i:164329 original size:20 final size:20
Alignment explanation
Indices: 164304--164353 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
164294 TTGTATTATT
164304 GCATTGCGATAGTAAGTATC
1 GCATTGCGATAGTAAGTATC
*
164324 GCATTGCGATAGTCAGTATC
1 GCATTGCGATAGTAAGTATC
164344 GCATTGCGAT
1 GCATTGCGAT
164354 TTTCCCAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (20 bp):
GCATTGCGATAGTAAGTATC
Found at i:164464 original size:21 final size:21
Alignment explanation
Indices: 164424--164464 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
164414 ACTGTAGACC
** *
164424 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGAAATGCAACT
164445 ATCGCAACGCGAAATGCAAC
1 ATCGCAACGCGAAATGCAAC
164465 GCGAATTTGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.29, G:0.17, T:0.20
Consensus pattern (21 bp):
ATCGCAACGCGAAATGCAACT
Found at i:166943 original size:68 final size:68
Alignment explanation
Indices: 166834--166971 Score: 276
Period size: 68 Copynumber: 2.0 Consensus size: 68
166824 GGTATGAAAA
166834 TAAGTAAACACTTCCAATGAAATTCTATTGTAAATGTGGTATTTGGTACTTTTCTATGTTAATAT
1 TAAGTAAACACTTCCAATGAAATTCTATTGTAAATGTGGTATTTGGTACTTTTCTATGTTAATAT
166899 TAT
66 TAT
166902 TAAGTAAACACTTCCAATGAAATTCTATTGTAAATGTGGTATTTGGTACTTTTCTATGTTAATAT
1 TAAGTAAACACTTCCAATGAAATTCTATTGTAAATGTGGTATTTGGTACTTTTCTATGTTAATAT
166967 TAT
66 TAT
166970 TA
1 TA
166972 TGGATTGTAA
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 70 1.00
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.44
Consensus pattern (68 bp):
TAAGTAAACACTTCCAATGAAATTCTATTGTAAATGTGGTATTTGGTACTTTTCTATGTTAATAT
TAT
Found at i:181548 original size:21 final size:21
Alignment explanation
Indices: 181487--181548 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
181477 TACTGTCTTT
*
181487 CTTTTAATAATATTTTTTTAA
1 CTTTTAATAATAATTTTTTAA
*
181508 -TATTTAATAAT-ATTTATTAA
1 CT-TTTAATAATAATTTTTTAA
181528 CTTTTAA-AATTAATTTTTTAA
1 CTTTTAATAA-TAATTTTTTAA
181549 AAATATTAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
19 2 0.06
20 14 0.41
21 18 0.53
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (21 bp):
CTTTTAATAATAATTTTTTAA
Found at i:181629 original size:29 final size:28
Alignment explanation
Indices: 181536--181642 Score: 78
Period size: 29 Copynumber: 3.6 Consensus size: 28
181526 AACTTTTAAA
181536 ATTAATTTTTTAAAAATATTAA-A-AAATT
1 ATTAATTTTTTAAAAATA--AATATAAATT
181564 ATTATTCACTTTTTTAAAAATAAATATTAAATT
1 ATTA---A-TTTTTTAAAAATAAATA-TAAATT
*
181597 -TTAATTTTATTAAAAATGAATA-AACATT
1 ATTAATTTT-TTAAAAATAAATATAA-ATT
181625 ATTAATTGTTGTTAAAAA
1 ATTAATT-TT-TTAAAAA
181643 AATAATAATT
Statistics
Matches: 66, Mismatches: 2, Indels: 20
0.75 0.02 0.23
Matches are distributed among these distances:
27 2 0.03
28 11 0.17
29 19 0.29
30 11 0.17
31 2 0.03
32 16 0.24
33 5 0.08
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (28 bp):
ATTAATTTTTTAAAAATAAATATAAATT
Done.