genome.fa.s7855.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007855.1 Hibiscus syriacus cultivar Beakdansim tig00110216_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  312932

Tables:   1   

This is table  1  of  1  ( 92 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1581--1631	15	3.2	17	71	23	56	37	19	0	43	1.51
6393--6443	21	2.4	22	87	9	79	50	13	9	25	1.72
11341--11374	13	2.5	13	90	4	50	38	0	0	61	0.96
11341--11374	7	5.0	7	92	7	52	38	0	0	61	0.96
27075--27326	43	5.9	43	92	0	360	25	21	24	28	1.99
27413--27471	21	2.8	21	78	0	64	57	18	5	18	1.58
30923--30952	15	2.1	14	93	6	51	70	0	20	10	1.16
31285--31668	41	9.4	41	84	3	479	34	20	19	26	1.96
31268--31668	165	2.4	165	85	5	535	34	20	19	25	1.96
34708--34782	21	3.6	21	90	0	114	32	28	18	21	1.97
37267--37611	171	2.0	170	89	2	521	46	10	12	29	1.75
40331--40365	17	2.1	17	94	0	61	45	17	0	37	1.48
43326--43350	5	5.0	5	100	0	50	40	0	0	60	0.97
47282--47309	5	5.6	5	100	0	56	39	0	42	17	1.50
53406--53445	14	2.9	14	84	0	62	50	0	0	50	1.00
54666--54969	149	2.0	149	98	0	590	34	20	17	27	1.95
55843--55877	18	1.9	18	88	11	54	22	17	5	54	1.64
56458--56502	21	2.1	21	87	0	63	15	24	28	31	1.96
59795--60098	149	2.0	149	97	0	572	34	20	17	27	1.95
60978--61012	18	1.9	18	88	11	54	22	17	5	54	1.64
61593--61637	21	2.1	21	87	0	63	15	24	28	31	1.96
63905--63966	31	2.0	31	93	3	108	29	30	8	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65340--65369	14	2.1	14	93	0	51	23	33	6	36	1.81
67423--67449	9	3.0	9	100	0	54	55	22	11	11	1.66
77571--77798	116	2.0	115	92	0	384	27	14	11	46	1.78
82728--82805	31	2.6	29	86	7	111	38	10	11	39	1.76
93484--93563	40	2.0	40	100	0	160	32	12	17	37	1.87
97121--97164	19	2.3	19	100	0	88	29	22	22	25	1.99
97235--97390	21	7.4	21	76	11	149	21	18	26	33	1.96
97219--97390	63	2.8	63	90	1	267	21	18	25	34	1.96
97321--97414	42	2.2	42	88	0	134	23	15	22	38	1.93
103159--103446	145	2.0	145	91	1	470	24	23	23	28	1.99
113460--113487	5	5.6	5	100	0	56	17	0	60	21	1.36
115214--115242	2	14.5	2	100	0	58	48	0	0	51	1.00
115464--115499	19	1.9	19	88	5	56	36	5	16	41	1.72
115843--116110	121	2.2	119	88	2	383	33	20	5	39	1.77
115875--116090	60	3.6	59	73	13	197	32	18	6	41	1.78
116633--116663	2	15.5	2	100	0	62	48	0	0	51	1.00
116698--116865	60	2.8	59	79	6	178	29	21	5	44	1.74
117526--117573	20	2.4	22	80	16	59	66	4	2	27	1.21
127098--127129	15	2.1	16	94	5	57	46	0	0	53	1.00
135741--135773	3	11.0	3	100	0	66	33	0	0	66	0.92
144929--145105	90	2.0	87	95	3	318	44	0	10	45	1.42
151505--151552	21	2.3	21	81	0	69	25	22	16	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151463--151579	20	5.8	21	73	6	71	30	23	17	28	1.97
151608--151737	41	3.1	41	84	6	163	37	25	15	21	1.93
151627--151737	21	5.3	21	84	6	154	40	24	14	20	1.90
151759--151799	21	2.0	21	86	9	59	24	19	21	34	1.97
154620--154661	21	2.0	20	90	4	66	9	21	50	19	1.75
154659--154720	19	3.3	18	88	4	79	24	27	30	17	1.97
154692--154741	10	4.9	10	79	13	57	32	22	26	20	1.98
154666--154741	19	3.8	19	86	6	89	27	26	27	18	1.98
161855--161885	7	4.4	7	91	0	53	25	25	29	19	1.99
161882--161916	5	6.6	5	87	12	52	5	17	57	20	1.60
161875--161916	22	1.9	22	95	0	75	9	19	52	19	1.72
161914--161994	19	4.2	18	85	6	81	27	24	29	18	1.98
161946--161994	10	4.9	10	79	16	57	32	22	26	18	1.97
161914--161994	9	8.4	9	72	12	63	27	24	29	18	1.98
176376--176433	29	2.0	29	89	0	89	13	36	27	22	1.92
176469--176519	23	2.2	23	82	6	59	23	23	41	11	1.87
176476--176528	23	2.3	24	77	9	65	26	20	39	13	1.89
176492--176561	33	2.1	33	91	0	113	22	22	44	10	1.83
176577--176632	29	1.9	29	96	0	103	19	30	37	12	1.89
187359--187406	3	16.0	3	86	0	69	4	35	0	60	1.16
189464--189683	29	7.7	27	87	5	165	46	15	5	31	1.69
189495--189705	29	7.2	29	88	4	280	45	17	5	32	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
190239--190296	21	2.8	20	84	5	71	32	6	6	53	1.54
190237--190307	20	3.5	19	81	9	79	30	5	7	56	1.49
196803--196996	29	6.6	29	85	5	203	48	16	3	30	1.63
196803--196991	88	2.1	88	84	3	238	49	15	3	31	1.62
199368--199877	255	2.0	255	100	0	1020	36	8	9	45	1.67
208361--208415	22	2.5	22	85	8	69	43	0	0	56	0.99
209332--209507	82	2.1	82	91	0	289	35	13	18	33	1.89
212522--212559	20	1.9	20	100	0	76	23	36	28	10	1.88
212546--212578	14	2.4	14	94	0	57	24	39	30	6	1.79
212523--212559	10	3.7	10	86	13	58	24	37	27	10	1.88
218250--218316	29	2.3	29	87	5	91	32	2	13	50	1.56
218121--218496	136	2.8	136	85	3	481	35	10	11	43	1.75
218501--218574	28	2.6	28	89	4	103	32	6	14	45	1.71
223060--223113	20	2.6	22	85	11	78	11	11	3	74	1.20
230822--230892	29	2.5	29	86	9	83	18	9	21	50	1.75
236330--236363	11	3.1	11	82	0	50	20	50	14	14	1.78
247162--247210	20	2.5	19	83	6	53	57	2	2	38	1.22
249512--249595	39	2.2	39	97	0	159	26	22	15	35	1.94
280659--280770	53	2.2	51	83	6	136	19	18	16	44	1.87
281494--281521	7	4.0	7	100	0	56	42	0	0	57	0.99
287317--287372	15	3.5	15	69	21	51	17	17	41	23	1.90
287280--287369	36	2.6	36	89	8	134	20	15	41	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287293--287376	33	2.5	33	90	5	105	19	15	41	23	1.89
287435--287563	65	2.0	65	85	0	177	16	8	46	28	1.76
295693--296000	6	52.2	6	91	8	501	33	0	0	66	0.92
296290--296317	2	14.0	2	100	0	56	50	0	0	50	1.00

Tables:   1

The End!