genome.fa.s7856.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007856.1 Hibiscus syriacus cultivar Beakdansim tig00110217_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65166

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3028--3054	2	13.5	2	100	0	54	51	0	0	48	1.00
27649--27774	40	3.1	39	72	14	112	34	27	11	26	1.90
32306--32348	16	2.8	15	82	6	59	32	2	0	65	1.06
33070--33208	21	6.8	20	70	8	73	35	25	17	20	1.95
33176--33486	20	15.5	20	81	6	79	34	26	19	20	1.96
33176--33565	40	9.7	40	87	2	439	35	25	18	20	1.95
33214--33565	20	17.6	19	85	5	398	34	25	18	21	1.96
34242--34288	24	2.0	24	87	8	69	25	14	21	38	1.92
34463--34487	12	2.1	12	100	0	50	72	0	28	0	0.86
36770--37043	19	15.4	19	81	15	354	46	17	21	13	1.83
36798--37065	109	2.5	105	91	6	459	46	16	22	14	1.83
36798--37065	52	5.0	52	93	4	455	46	16	22	14	1.83
37072--37154	20	4.6	19	81	15	113	14	24	18	43	1.87
37261--37297	14	2.6	14	91	0	65	45	21	0	32	1.52
39246--39302	14	3.7	14	77	20	60	45	22	21	10	1.82
39227--39319	33	2.8	33	95	0	168	47	21	20	10	1.80
39190--39324	19	7.6	19	76	16	128	45	23	19	11	1.82
39320--39448	19	7.3	19	75	17	125	8	17	28	45	1.77
39320--39411	33	2.8	33	93	3	150	7	18	28	45	1.76
39492--39870	92	4.1	93	98	0	735	46	18	12	22	1.83
39492--39870	185	2.0	185	98	1	733	46	18	12	22	1.83
41577--41666	14	5.7	14	74	23	81	42	23	25	8	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41569--41683	33	3.5	33	93	0	203	45	20	23	10	1.82
41576--41688	19	6.8	18	71	23	79	43	22	23	10	1.84
41700--41754	14	3.6	14	73	21	56	9	25	23	41	1.83
41684--41754	33	2.2	33	94	0	124	8	22	25	43	1.81
41695--41776	33	2.5	33	89	2	119	9	25	21	42	1.84
41707--41795	20	4.8	20	72	19	75	12	24	19	43	1.85
41875--41945	33	2.2	33	92	0	115	47	18	22	11	1.80
42127--42181	22	2.5	22	81	0	74	20	16	40	23	1.91
42321--42513	20	9.6	20	82	5	219	19	19	25	35	1.95
42321--42513	60	3.2	60	83	0	251	19	19	25	35	1.95
45568--45607	21	1.9	21	84	0	53	27	15	5	52	1.63
45682--45766	31	2.7	30	80	7	98	52	3	0	43	1.18
48031--48105	37	2.0	37	100	0	150	21	34	6	37	1.80
50353--50391	2	20.0	2	94	5	71	48	0	0	51	1.00
51478--51532	21	2.6	22	74	8	60	34	9	3	52	1.50
51779--51822	21	2.1	21	83	8	54	15	15	0	68	1.22
51813--51877	25	2.5	25	80	7	76	26	6	1	66	1.24
54783--54825	16	2.6	17	82	14	54	67	2	4	25	1.22
57485--57522	12	3.2	12	85	7	51	68	5	23	2	1.23
57490--57523	11	2.9	12	86	8	52	64	5	29	0	1.17
60639--60709	18	3.9	18	75	23	69	2	38	0	59	1.12

Tables:   1

The End!