genome.fa.s7857.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007857.1 Hibiscus syriacus cultivar Beakdansim tig00110218_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94273

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1505--1794	33	8.4	34	77	15	244	45	18	22	14	1.85
1530--1772	19	13.7	19	82	15	324	46	16	22	14	1.84
1505--1774	52	5.1	51	84	10	241	45	18	22	13	1.84
1801--1883	20	4.6	19	81	15	113	14	24	18	43	1.87
1987--2023	14	2.6	14	91	0	65	45	21	0	32	1.52
3890--4022	19	7.6	19	73	19	110	45	24	18	11	1.82
3924--4017	32	2.9	32	91	1	161	48	21	19	10	1.78
4018--4108	33	2.8	33	91	5	141	7	18	28	45	1.77
4188--4564	89	4.1	93	94	4	683	46	18	12	22	1.83
6257--6346	14	5.7	14	74	23	81	42	23	25	8	1.83
6249--6363	33	3.5	33	93	0	203	45	20	23	10	1.82
6256--6368	19	6.8	18	71	23	79	43	22	23	10	1.84
6380--6434	14	3.6	14	73	21	56	9	25	23	41	1.83
6364--6434	33	2.2	33	94	0	124	8	22	25	43	1.81
6375--6456	33	2.5	33	89	2	119	9	25	21	42	1.84
6387--6475	20	4.8	20	72	19	75	12	24	19	43	1.85
6554--6624	33	2.2	33	92	0	115	47	18	22	11	1.80
6995--7187	20	9.6	20	82	5	219	19	19	25	35	1.95
6995--7187	60	3.2	60	83	0	251	19	19	25	35	1.95
8185--8222	19	2.1	19	85	9	53	36	5	5	52	1.47
10297--10381	31	2.7	30	80	7	98	52	3	0	43	1.18
12648--12722	37	2.0	37	100	0	150	21	34	6	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14958--14993	2	18.0	2	100	0	72	50	0	0	50	1.00
16083--16137	21	2.6	22	74	8	60	34	9	3	52	1.50
16392--16435	21	2.1	21	83	8	54	15	15	0	68	1.22
19435--19477	16	2.6	17	82	14	54	67	2	4	25	1.22
22181--22218	12	3.2	12	85	7	51	68	5	23	2	1.23
22186--22219	11	2.9	12	86	8	52	64	5	29	0	1.17
25413--25474	23	2.7	22	82	9	70	3	40	0	56	1.15
25409--25475	19	3.5	19	79	6	73	2	40	0	56	1.14
35103--35136	12	2.8	12	90	0	59	26	17	35	20	1.95
35039--35307	68	3.8	68	79	15	328	26	27	26	19	1.99
35342--35421	29	2.8	29	94	0	124	15	30	32	22	1.94
35603--35654	25	2.1	25	100	0	104	26	11	34	26	1.91
35694--35746	21	2.5	21	96	0	97	62	0	35	1	1.06
35660--35723	17	3.9	16	70	13	58	56	4	35	3	1.36
35909--36037	45	2.9	46	80	15	130	40	0	12	47	1.41
36060--36124	33	1.9	34	90	3	105	41	0	13	44	1.44
36125--36155	15	2.1	14	94	5	53	38	0	6	54	1.26
36885--36940	19	3.1	18	77	15	62	50	14	0	35	1.43
36799--37202	124	3.3	124	97	0	763	44	9	2	43	1.51
37146--37179	8	4.2	8	85	14	52	50	8	0	41	1.34
36956--37202	98	2.5	95	82	7	257	44	9	2	43	1.50
36804--37208	26	16.5	24	75	10	229	44	9	2	43	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40030--40088	26	2.3	24	78	16	64	40	3	8	47	1.51
40895--40957	28	2.2	30	91	5	103	57	11	0	31	1.34
40899--40964	28	2.4	28	85	10	98	56	10	0	33	1.34
40934--40982	21	2.3	21	85	3	71	53	16	0	30	1.43
41447--41576	17	8.4	16	73	16	114	16	53	9	21	1.70
41419--41501	33	2.4	34	92	6	132	16	53	8	21	1.70
41441--41566	16	8.2	16	68	15	95	15	55	7	21	1.65
41470--41520	26	2.0	25	88	7	77	15	56	5	21	1.60
41464--41542	41	1.9	42	92	2	133	16	54	7	21	1.67
41506--41576	33	2.2	32	92	2	115	16	52	9	21	1.73
41616--41703	29	3.1	28	95	3	149	18	34	32	14	1.91
55106--55182	31	2.5	31	95	0	145	36	19	10	33	1.86
63088--63395	167	1.9	167	81	8	380	25	11	17	45	1.82
64525--64564	20	2.0	20	95	0	71	45	12	5	37	1.64
64578--64617	20	2.0	21	90	5	64	45	15	5	35	1.68
64631--64669	20	2.0	20	94	0	69	41	12	5	41	1.65
64521--64670	53	2.9	51	95	3	264	48	12	6	34	1.65
69238--69282	20	2.3	20	84	3	56	48	11	8	31	1.69
69294--69333	20	2.0	21	90	5	64	45	15	5	35	1.68
69347--69385	20	2.0	20	90	10	62	43	15	5	35	1.69
69237--69386	53	2.9	52	94	3	257	48	12	6	32	1.67
76949--77355	217	1.9	212	87	5	593	30	17	20	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85058--85114	29	2.0	28	86	6	78	42	28	10	19	1.84
91713--91849	31	4.5	31	79	5	118	53	13	10	22	1.70
91783--91839	29	2.0	29	92	0	96	54	12	8	24	1.65
92168--92281	60	1.9	59	82	5	140	35	15	14	35	1.88
93399--93580	59	3.0	61	86	5	237	30	11	21	36	1.89

Tables:   1

The End!