Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007858.1 Hibiscus syriacus cultivar Beakdansim tig00110220_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 969818
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
File 3 of 4
Found at i:417421 original size:12 final size:13
Alignment explanation
Indices: 417393--417421 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
417383 TTTGGTAATC
417393 CCCGCCCCGATTA
1 CCCGCCCCGATTA
417406 CCCGCCCCGA-TA
1 CCCGCCCCGATTA
417418 CCCG
1 CCCG
417422 GTCCGATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.38
13 10 0.62
ACGTcount: A:0.14, C:0.59, G:0.17, T:0.10
Consensus pattern (13 bp):
CCCGCCCCGATTA
Found at i:423665 original size:60 final size:59
Alignment explanation
Indices: 423507--423671 Score: 161
Period size: 60 Copynumber: 2.8 Consensus size: 59
423497 ATATTACTGG
* * * * * * **
423507 AATGATCAAATGTTTGGGGACCAATTTAAAATAAGGGTAATAGTTTGAGGCTGAATTTGG
1 AATGTTCAAATGTTTGAGGACCAATTTAAAATAAGAGTCATAG-TTGAGGATGAAATTAA
* * * ***
423567 AATGTTCAGAA-GTTTGTGGATCAATTTAGAACGGGAGTCATAGTTGAAGGATGAAATTAA
1 AATGTTCA-AATGTTTGAGGACCAATTTAAAATAAGAGTCATAGTTG-AGGATGAAATTAA
*
423627 AATGTTCAAATGTTTAAGGACCAATTTAAAATAAGAGTCATAGTT
1 AATGTTCAAATGTTTGAGGACCAATTTAAAATAAGAGTCATAGTT
423672 TGGAAATGTA
Statistics
Matches: 82, Mismatches: 20, Indels: 6
0.76 0.19 0.06
Matches are distributed among these distances:
59 5 0.06
60 75 0.91
61 2 0.02
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.32
Consensus pattern (59 bp):
AATGTTCAAATGTTTGAGGACCAATTTAAAATAAGAGTCATAGTTGAGGATGAAATTAA
Found at i:425371 original size:2 final size:2
Alignment explanation
Indices: 425364--425389 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
425354 TTATTTATGC
425364 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
425390 GAGCATGATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:427070 original size:14 final size:14
Alignment explanation
Indices: 427051--427078 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
427041 CACTGGGCAT
427051 CCGAGGCCATCCGA
1 CCGAGGCCATCCGA
427065 CCGAGGCCATCCGA
1 CCGAGGCCATCCGA
427079 AAGCATCCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.43, G:0.29, T:0.07
Consensus pattern (14 bp):
CCGAGGCCATCCGA
Found at i:427090 original size:20 final size:20
Alignment explanation
Indices: 427065--427119 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
427055 GGCCATCCGA
427065 CCGAGGCCATCCGAAAGCAT
1 CCGAGGCCATCCGAAAGCAT
* *
427085 CCGAGGCCATCAGAGAGCAT
1 CCGAGGCCATCCGAAAGCAT
* *
427105 CCGATGCCATACGAA
1 CCGAGGCCATCCGAA
427120 CGAGCTATGC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.31, C:0.33, G:0.25, T:0.11
Consensus pattern (20 bp):
CCGAGGCCATCCGAAAGCAT
Found at i:427150 original size:23 final size:23
Alignment explanation
Indices: 427120--427166 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
427110 GCCATACGAA
*
427120 CGAGCTATGCGAGGGCATCCGAG
1 CGAGCTATGCGAGGGAATCCGAG
*
427143 CGAGCTATGCGAGGGAATTCGAG
1 CGAGCTATGCGAGGGAATCCGAG
427166 C
1 C
427167 AACCGAGCGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.23, C:0.23, G:0.38, T:0.15
Consensus pattern (23 bp):
CGAGCTATGCGAGGGAATCCGAG
Found at i:427246 original size:30 final size:30
Alignment explanation
Indices: 427179--427247 Score: 113
Period size: 29 Copynumber: 2.3 Consensus size: 30
427169 CCGAGCGAGG
427179 GTAGGTCGCCCGGAGTACATGGCGACCTAC
1 GTAGGTCGCCCGGAGTACATGGCGACCTAC
* *
427209 -AAGGTCGCCCGGAGTGCATGGCGACCTAC
1 GTAGGTCGCCCGGAGTACATGGCGACCTAC
427238 GTAGGTCGCC
1 GTAGGTCGCC
427248 ATGCACTCCG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
29 27 0.77
30 8 0.23
ACGTcount: A:0.19, C:0.30, G:0.35, T:0.16
Consensus pattern (30 bp):
GTAGGTCGCCCGGAGTACATGGCGACCTAC
Found at i:427277 original size:29 final size:30
Alignment explanation
Indices: 427228--427296 Score: 113
Period size: 29 Copynumber: 2.3 Consensus size: 30
427218 CGGAGTGCAT
427228 GGCGACCTACGTAGGTCGCCATGCACTCCG
1 GGCGACCTACGTAGGTCGCCATGCACTCCG
* *
427258 GGCGACCT-TGTAGGTCGCCATGTACTCCG
1 GGCGACCTACGTAGGTCGCCATGCACTCCG
427287 GGCGACCTAC
1 GGCGACCTAC
427297 CCTCGCTCGG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
29 27 0.77
30 8 0.23
ACGTcount: A:0.16, C:0.35, G:0.30, T:0.19
Consensus pattern (30 bp):
GGCGACCTACGTAGGTCGCCATGCACTCCG
Found at i:427339 original size:33 final size:33
Alignment explanation
Indices: 427298--427381 Score: 105
Period size: 33 Copynumber: 2.5 Consensus size: 33
427288 GCGACCTACC
* *
427298 CTCGCTCGGTTGCCCTCGAATTCCATCGCGTAG
1 CTCGCTCGGTTGCCCTCGAATGCCATCGCATAG
* *
427331 CTCGCTCGGTTGCCCTCGGATGCCCTCGCATAG
1 CTCGCTCGGTTGCCCTCGAATGCCATCGCATAG
* * *
427364 CTCGTTCGGATGGCCTCG
1 CTCGCTCGGTTGCCCTCG
427382 TCGGATGGCC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.10, C:0.37, G:0.27, T:0.26
Consensus pattern (33 bp):
CTCGCTCGGTTGCCCTCGAATGCCATCGCATAG
Found at i:427387 original size:13 final size:14
Alignment explanation
Indices: 427364--427394 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
427354 CCTCGCATAG
427364 CTCGTTCGGATGGC
1 CTCGTTCGGATGGC
427378 CTCG-TCGGATGGC
1 CTCGTTCGGATGGC
427391 CTCG
1 CTCG
427395 ATGCCCAGCG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 13 0.76
14 4 0.24
ACGTcount: A:0.06, C:0.32, G:0.35, T:0.26
Consensus pattern (14 bp):
CTCGTTCGGATGGC
Found at i:432976 original size:36 final size:36
Alignment explanation
Indices: 432908--433022 Score: 180
Period size: 35 Copynumber: 3.2 Consensus size: 36
432898 CCATTACAAT
*
432908 TTTTC-AACAAACATCTACCAAACTTTGAAAAACCA
1 TTTTCAAACAAACATTTACCAAACTTTGAAAAACCA
*
432943 TTTTTCAAATAAACATTTACCAAACTTTG-AAAACCA
1 -TTTTCAAACAAACATTTACCAAACTTTGAAAAACCA
*
432979 TTTTCAAAGAAACATTTACCAAACTTTGAAAAACCA
1 TTTTCAAACAAACATTTACCAAACTTTGAAAAACCA
433015 TTTTCAAA
1 TTTTCAAA
433023 GTTGGTTGCC
Statistics
Matches: 74, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
35 27 0.36
36 27 0.36
37 20 0.27
ACGTcount: A:0.45, C:0.21, G:0.03, T:0.30
Consensus pattern (36 bp):
TTTTCAAACAAACATTTACCAAACTTTGAAAAACCA
Found at i:433023 original size:36 final size:36
Alignment explanation
Indices: 432908--433023 Score: 182
Period size: 36 Copynumber: 3.2 Consensus size: 36
432898 CCATTACAAT
* *
432908 TTTTC-AACAAACATCTACCAAACTTTGAAAAACCA
1 TTTTCAAAGAAACATTTACCAAACTTTGAAAAACCA
*
432943 TTTTTCAAATAAACATTTACCAAACTTTG-AAAACCA
1 -TTTTCAAAGAAACATTTACCAAACTTTGAAAAACCA
432979 TTTTCAAAGAAACATTTACCAAACTTTGAAAAACCA
1 TTTTCAAAGAAACATTTACCAAACTTTGAAAAACCA
433015 TTTTCAAAG
1 TTTTCAAAG
433024 TTGGTTGCCA
Statistics
Matches: 75, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
35 27 0.36
36 28 0.37
37 20 0.27
ACGTcount: A:0.45, C:0.21, G:0.04, T:0.30
Consensus pattern (36 bp):
TTTTCAAAGAAACATTTACCAAACTTTGAAAAACCA
Found at i:434611 original size:15 final size:15
Alignment explanation
Indices: 434591--434623 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
434581 GACAACTGTA
*
434591 TACGTCCCGAAGGAC
1 TACGTCCCAAAGGAC
434606 TACGTCCCAAAGGAC
1 TACGTCCCAAAGGAC
434621 TAC
1 TAC
434624 AATACCCTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.30, C:0.33, G:0.21, T:0.15
Consensus pattern (15 bp):
TACGTCCCAAAGGAC
Found at i:439519 original size:21 final size:21
Alignment explanation
Indices: 439495--439555 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
439485 TTTAAAGAAA
439495 CATTTACCAAACTTTGAAAAC
1 CATTTACCAAACTTTGAAAAC
*
439516 CATTT-TCAAA----G-AAA-
1 CATTTACCAAACTTTGAAAAC
439530 CATTTACCAAACTTTGAAAAC
1 CATTTACCAAACTTTGAAAAC
439551 CATTT
1 CATTT
439556 TCAAAGTTGG
Statistics
Matches: 31, Mismatches: 2, Indels: 14
0.66 0.04 0.30
Matches are distributed among these distances:
14 5 0.16
15 7 0.23
16 1 0.03
19 1 0.03
20 7 0.23
21 10 0.32
ACGTcount: A:0.43, C:0.21, G:0.05, T:0.31
Consensus pattern (21 bp):
CATTTACCAAACTTTGAAAAC
Found at i:439534 original size:35 final size:35
Alignment explanation
Indices: 439447--439561 Score: 178
Period size: 35 Copynumber: 3.3 Consensus size: 35
439437 CCATTACAAT
* *
439447 TTTTC-AACAAACATCTACCAAACTTTGAAAACCCA
1 TTTTCAAAGAAACATTTACCAAACTTTGAAAA-CCA
*
439482 TTTTTTAAAGAAACATTTACCAAACTTTGAAAACCA
1 -TTTTCAAAGAAACATTTACCAAACTTTGAAAACCA
439518 TTTTCAAAGAAACATTTACCAAACTTTGAAAACCA
1 TTTTCAAAGAAACATTTACCAAACTTTGAAAACCA
439553 TTTTCAAAG
1 TTTTCAAAG
439562 TTGGTTGCCA
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
35 43 0.58
36 7 0.09
37 24 0.32
ACGTcount: A:0.43, C:0.21, G:0.05, T:0.30
Consensus pattern (35 bp):
TTTTCAAAGAAACATTTACCAAACTTTGAAAACCA
Found at i:440260 original size:2 final size:2
Alignment explanation
Indices: 440238--440276 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
440228 AGTCCCAACT
* *
440238 TA TA -A TA TC TA TA TC TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
440277 ATGAAATCTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:451408 original size:23 final size:23
Alignment explanation
Indices: 451382--451426 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
451372 ATCATTGAGT
451382 TTTATTAAAAAATAATTAATAAA
1 TTTATTAAAAAATAATTAATAAA
* *
451405 TTTATTAAATAATATTTAATAA
1 TTTATTAAAAAATAATTAATAA
451427 TCGAAATAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (23 bp):
TTTATTAAAAAATAATTAATAAA
Found at i:452353 original size:2 final size:2
Alignment explanation
Indices: 452346--452373 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
452336 ATCCTAACTC
452346 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
452374 TACCCTAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:454725 original size:2 final size:2
Alignment explanation
Indices: 454720--454745 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
454710 ATTATAAATT
454720 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
454746 GTGAATTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:461597 original size:61 final size:61
Alignment explanation
Indices: 461470--461590 Score: 149
Period size: 61 Copynumber: 2.0 Consensus size: 61
461460 GTTCTACATT
* * * *
461470 ATTTTATATGGATTTATTAAATGATATTTTAAATGATTTTGGGTATGAATTTACTCAATAC
1 ATTTTATATGAATTTATTAAATGATATTTTAAATGATTATGAGTATGAATTTACCCAATAC
* * *
461531 ATTTTATATGAATTTTATTACATGATA-TTTGAATG-TTATGAGTATGAA-TTGCCCAATAC
1 ATTTTATATGAA-TTTATTAAATGATATTTTAAATGATTATGAGTATGAATTTACCCAATAC
461590 A
1 A
461591 GATTTTACTT
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
59 10 0.19
60 11 0.21
61 18 0.35
62 13 0.25
ACGTcount: A:0.35, C:0.07, G:0.13, T:0.45
Consensus pattern (61 bp):
ATTTTATATGAATTTATTAAATGATATTTTAAATGATTATGAGTATGAATTTACCCAATAC
Found at i:462252 original size:31 final size:31
Alignment explanation
Indices: 462214--462282 Score: 138
Period size: 31 Copynumber: 2.2 Consensus size: 31
462204 TAACCTAAAC
462214 GTTTCACTAAGTGAAAACTTAGCATGTTAGT
1 GTTTCACTAAGTGAAAACTTAGCATGTTAGT
462245 GTTTCACTAAGTGAAAACTTAGCATGTTAGT
1 GTTTCACTAAGTGAAAACTTAGCATGTTAGT
462276 GTTTCAC
1 GTTTCAC
462283 ACGTAGGTAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.36
Consensus pattern (31 bp):
GTTTCACTAAGTGAAAACTTAGCATGTTAGT
Found at i:472284 original size:14 final size:15
Alignment explanation
Indices: 472261--472304 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 15
472251 TACGTTTCTG
*
472261 TTTA-TATGCAGAGA
1 TTTATTATGCAGGGA
472275 TTT-TTATGCAGGGA
1 TTTATTATGCAGGGA
472289 TTTATT-TGCAGGGA
1 TTTATTATGCAGGGA
472303 TT
1 TT
472305 ACTTCCCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
14 25 0.93
15 2 0.07
ACGTcount: A:0.25, C:0.07, G:0.25, T:0.43
Consensus pattern (15 bp):
TTTATTATGCAGGGA
Found at i:472697 original size:35 final size:36
Alignment explanation
Indices: 472624--472698 Score: 100
Period size: 36 Copynumber: 2.1 Consensus size: 36
472614 AACAAGTTGG
* * *
472624 AAAATTTATATATTTTCTTTAAAAATTTAAATTCAT
1 AAAATTTATATAATTTCTTTAAAAATTAAAAATCAT
472660 AAAATTTATATAATTT-TTTACAAAATTAAAAAT-AT
1 AAAATTTATATAATTTCTTTA-AAAATTAAAAATCAT
472695 AAAA
1 AAAA
472699 AGTTTAATGA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
35 10 0.29
36 25 0.71
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (36 bp):
AAAATTTATATAATTTCTTTAAAAATTAAAAATCAT
Found at i:477071 original size:14 final size:15
Alignment explanation
Indices: 477052--477088 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
477042 ACAGTTACAA
477052 ATAATT-TAAATAAT
1 ATAATTATAAATAAT
477066 ATAATTATAAATAA-
1 ATAATTATAAATAAT
*
477080 AAAATTATA
1 ATAATTATA
477089 TAATTTTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
ATAATTATAAATAAT
Found at i:477653 original size:16 final size:16
Alignment explanation
Indices: 477632--477662 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
477622 ATCAAGAACT
477632 GACTAAAACTAAAACG
1 GACTAAAACTAAAACG
477648 GACTAAAACTAAAAC
1 GACTAAAACTAAAAC
477663 AAACCAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.58, C:0.19, G:0.10, T:0.13
Consensus pattern (16 bp):
GACTAAAACTAAAACG
Found at i:478499 original size:15 final size:17
Alignment explanation
Indices: 478475--478507 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
478465 GAGCATCATT
478475 AATTTAT-AAAAATTTA
1 AATTTATAAAAAATTTA
478491 AATTT-TAAAAAATTTA
1 AATTTATAAAAAATTTA
478507 A
1 A
478508 CGTATAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 1 0.06
16 15 0.94
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
AATTTATAAAAAATTTA
Found at i:481272 original size:35 final size:34
Alignment explanation
Indices: 481223--481304 Score: 101
Period size: 35 Copynumber: 2.4 Consensus size: 34
481213 ACCCGACCGA
* *
481223 TCGGGTCGGATTTTTTTAAAAAAAATTGGTTCGGG
1 TCGGGTCGGGTTTTTTTAAAAAAAACTGG-TCGGG
* ***
481258 TCGGGTCGGGTTTTTTTTAAATGCACTGGTCGGG
1 TCGGGTCGGGTTTTTTTAAAAAAAACTGGTCGGG
481292 TCGGGTCGGGTTT
1 TCGGGTCGGGTTT
481305 AGGGTAAAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
34 18 0.44
35 23 0.56
ACGTcount: A:0.16, C:0.12, G:0.34, T:0.38
Consensus pattern (34 bp):
TCGGGTCGGGTTTTTTTAAAAAAAACTGGTCGGG
Found at i:492902 original size:52 final size:52
Alignment explanation
Indices: 492824--492922 Score: 198
Period size: 52 Copynumber: 1.9 Consensus size: 52
492814 TTTAGGTTGC
492824 CAATCTCACGTGGTATTGTACCTACCATACATTTTATCAAACAAATAGTATA
1 CAATCTCACGTGGTATTGTACCTACCATACATTTTATCAAACAAATAGTATA
492876 CAATCTCACGTGGTATTGTACCTACCATACATTTTATCAAACAAATA
1 CAATCTCACGTGGTATTGTACCTACCATACATTTTATCAAACAAATA
492923 TAGTATCAGA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 47 1.00
ACGTcount: A:0.36, C:0.22, G:0.09, T:0.32
Consensus pattern (52 bp):
CAATCTCACGTGGTATTGTACCTACCATACATTTTATCAAACAAATAGTATA
Found at i:499402 original size:44 final size:42
Alignment explanation
Indices: 499339--499425 Score: 156
Period size: 44 Copynumber: 2.0 Consensus size: 42
499329 TTTTTTTCCT
499339 TGTTAGATCGAGAGAAGTTGAAATTCCTATTTCTCATAATGAAA
1 TGTTAGATCGAGAGAAGTTGAAATT-CT-TTTCTCATAATGAAA
499383 TGTTAGATCGAGAGAAGTTGAAATTCTTTTCTCATAATGAAA
1 TGTTAGATCGAGAGAAGTTGAAATTCTTTTCTCATAATGAAA
499425 T
1 T
499426 TCTTCTACCT
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
42 16 0.37
43 2 0.05
44 25 0.58
ACGTcount: A:0.36, C:0.10, G:0.18, T:0.36
Consensus pattern (42 bp):
TGTTAGATCGAGAGAAGTTGAAATTCTTTTCTCATAATGAAA
Found at i:500437 original size:5 final size:5
Alignment explanation
Indices: 500427--500485 Score: 50
Period size: 5 Copynumber: 11.2 Consensus size: 5
500417 CTATTAATAT
500427 TATTA TATTA TATTA CTAGTTA TATTGTA TGATTA TATTA TA-TA TATTA
1 TATTA TATTA TATTA -TA-TTA TA-T-TA T-ATTA TATTA TATTA TATTA
*
500476 -ATTT TATTA T
1 TATTA TATTA T
500486 TTGAATCATA
Statistics
Matches: 45, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
4 7 0.16
5 22 0.49
6 8 0.18
7 7 0.16
8 1 0.02
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.58
Consensus pattern (5 bp):
TATTA
Found at i:500441 original size:13 final size:13
Alignment explanation
Indices: 500418--500485 Score: 50
Period size: 13 Copynumber: 5.1 Consensus size: 13
500408 CGTCTGATGC
500418 TATTAATATTATTA
1 TATT-ATATTATTA
*
500432 TATTATATTACTA
1 TATTATATTATTA
* *
500445 -GTTATATT-GTA
1 TATTATATTATTA
500456 TGATTATATTATATA
1 T-ATTATATTAT-TA
*
500471 TATTAATTTTATTA
1 TATT-ATATTATTA
500485 T
1 T
500486 TTGAATCATA
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
11 2 0.05
12 7 0.16
13 15 0.35
14 10 0.23
15 9 0.21
ACGTcount: A:0.37, C:0.01, G:0.04, T:0.57
Consensus pattern (13 bp):
TATTATATTATTA
Found at i:501523 original size:2 final size:2
Alignment explanation
Indices: 501510--501596 Score: 94
Period size: 2 Copynumber: 45.5 Consensus size: 2
501500 CAGTATGTTA
* *
501510 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
501552 -T AT -T AT -T AT -T AT AT TT CAT -T AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT
*
501590 AC AT AT A
1 AT AT AT A
501597 CGCTTAGTAT
Statistics
Matches: 71, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
1 5 0.07
2 65 0.92
3 1 0.01
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:501929 original size:18 final size:19
Alignment explanation
Indices: 501860--501948 Score: 62
Period size: 18 Copynumber: 4.8 Consensus size: 19
501850 ATTATTATTA
*
501860 TTATCTTTCTTCATTTTAT
1 TTATCTTTCTTCATTTTTT
* *
501879 TTGT-TTTATTCA--TTTT
1 TTATCTTTCTTCATTTTTT
* *
501895 TTACCTTTACTTTATTTTTT
1 TTATCTTT-CTTCATTTTTT
*
501915 TTATC-TTCTTCATTTTATA
1 TTATCTTTCTTCATTTT-TT
*
501934 TTA-CTTTCATCATTT
1 TTATCTTTCTTCATTT
501949 CATTCGTTTT
Statistics
Matches: 53, Mismatches: 11, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
16 5 0.09
17 3 0.06
18 19 0.36
19 18 0.34
20 8 0.15
ACGTcount: A:0.17, C:0.15, G:0.01, T:0.67
Consensus pattern (19 bp):
TTATCTTTCTTCATTTTTT
Found at i:511964 original size:100 final size:99
Alignment explanation
Indices: 511800--511985 Score: 291
Period size: 100 Copynumber: 1.9 Consensus size: 99
511790 AACCAATTTT
* *
511800 AACTTCACAGCGAAGGATATTGGACCCAAGACAACACAAGCTCAACTTCACGACGAAGGGGCGGC
1 AACTTCACAACGAAGGATATTAGACCCAAGACAACACAAGCTCAACTTCACGACGAAGGGGCGGC
*
511865 TGATTGTCAACAAACAACTTTCAGAGTCAATCTC
66 TGACTGTCAACAAACAACTTTCAGAGTCAATCTC
* * * * *
511899 AACTTCGCAACGAAGGATATTATACTCGAGACAAGCACAAGCTCAACTTCACGGCGAAGGGGCGG
1 AACTTCACAACGAAGGATATTAGACCCAAGACAA-CACAAGCTCAACTTCACGACGAAGGGGCGG
511964 CTGACTGTCAACAAACAACTTT
65 CTGACTGTCAACAAACAACTTT
511986 TCAGTTTCAG
Statistics
Matches: 78, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
99 28 0.36
100 50 0.64
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.18
Consensus pattern (99 bp):
AACTTCACAACGAAGGATATTAGACCCAAGACAACACAAGCTCAACTTCACGACGAAGGGGCGGC
TGACTGTCAACAAACAACTTTCAGAGTCAATCTC
Found at i:513593 original size:11 final size:11
Alignment explanation
Indices: 513577--513640 Score: 50
Period size: 11 Copynumber: 6.3 Consensus size: 11
513567 TAATATACAT
513577 ATATATATATA
1 ATATATATATA
513588 ATATATATATA
1 ATATATATATA
* *
513599 AT-TTTATATT
1 ATATATATATA
513609 AT-TAT-TAT-
1 ATATATATATA
*
513617 AT-TCAT-TATT
1 ATAT-ATATATA
513627 ATATATATATA
1 ATATATATATA
513638 ATA
1 ATA
513641 CGTATACGCT
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
8 3 0.07
9 8 0.18
10 14 0.31
11 20 0.44
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (11 bp):
ATATATATATA
Found at i:513606 original size:25 final size:24
Alignment explanation
Indices: 513578--513635 Score: 66
Period size: 23 Copynumber: 2.4 Consensus size: 24
513568 AATATACATA
513578 TATATATATAATATATATATAATT-T
1 TATATATATAAT-TATAT-TAATTAT
* *
513603 TATAT-TATTATTATATTCATTAT
1 TATATATATAATTATATTAATTAT
513626 TATATATATA
1 TATATATATA
513636 TAATACGTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
22 4 0.14
23 11 0.39
24 8 0.29
25 5 0.18
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (24 bp):
TATATATATAATTATATTAATTAT
Found at i:513624 original size:12 final size:11
Alignment explanation
Indices: 513593--513630 Score: 51
Period size: 12 Copynumber: 3.5 Consensus size: 11
513583 ATATAATATA
*
513593 TATATAATT-T
1 TATATTATTAT
513603 TATATTATTAT
1 TATATTATTAT
513614 TATATTCATTAT
1 TATATT-ATTAT
513626 TATAT
1 TATAT
513631 ATATATAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
10 8 0.32
11 7 0.28
12 10 0.40
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (11 bp):
TATATTATTAT
Found at i:513940 original size:9 final size:9
Alignment explanation
Indices: 513926--513950 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
513916 TCTTTCTTCA
513926 TTTTATTTG
1 TTTTATTTG
513935 TTTTATTTG
1 TTTTATTTG
513944 TTTTATT
1 TTTTATT
513951 CATTTTTTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.12, C:0.00, G:0.08, T:0.80
Consensus pattern (9 bp):
TTTTATTTG
Found at i:514988 original size:43 final size:41
Alignment explanation
Indices: 514902--515004 Score: 138
Period size: 42 Copynumber: 2.5 Consensus size: 41
514892 TTTTTTTATT
* * *
514902 ATTA-AAATATATT-CTTTAATTATTAAAAATATAAAAATT
1 ATTATAAATATATTATTTTAATAATTAAAAATATAAAAATA
*
514941 ATTATATAATATATTATTTTAATAATTTAAAATATAATAAATA
1 ATTATA-AATATATTATTTTAATAATTAAAAATATAA-AAATA
514984 ATTATAAATATATTATTTTAA
1 ATTATAAATATATTATTTTAA
515005 AATACTAATA
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
39 4 0.07
40 1 0.02
41 8 0.14
42 33 0.59
43 10 0.18
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (41 bp):
ATTATAAATATATTATTTTAATAATTAAAAATATAAAAATA
Found at i:515411 original size:26 final size:28
Alignment explanation
Indices: 515382--515447 Score: 100
Period size: 29 Copynumber: 2.4 Consensus size: 28
515372 ATGATGATCA
515382 AAATAATTTAATTTT-AA-AACGTGAAT
1 AAATAATTTAATTTTAAACAACGTGAAT
*
515408 AAATAATTTAATTTTAAAACAACGTTAAT
1 AAATAATTTAATTTT-AAACAACGTGAAT
515437 AAATAATTTAA
1 AAATAATTTAA
515448 GTAATTCAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
26 15 0.42
28 2 0.06
29 19 0.53
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.38
Consensus pattern (28 bp):
AAATAATTTAATTTTAAACAACGTGAAT
Found at i:517803 original size:23 final size:24
Alignment explanation
Indices: 517768--517813 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
517758 TTTATTAATA
517768 ATATTACATTAAT-ATGAAAATTT
1 ATATTACATTAATAATGAAAATTT
*
517791 ATATTA-ATGTAATAATGACAATT
1 ATATTACAT-TAATAATGAAAATT
517814 GATACCTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 2 0.10
23 10 0.50
24 8 0.40
ACGTcount: A:0.48, C:0.04, G:0.07, T:0.41
Consensus pattern (24 bp):
ATATTACATTAATAATGAAAATTT
Found at i:519367 original size:16 final size:16
Alignment explanation
Indices: 519330--519371 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
519320 TTATTAATTT
*
519330 ATTAATAAAA-TGAAA
1 ATTAATAAAATTTAAA
519345 ATT--TAAAATTTAAA
1 ATTAATAAAATTTAAA
519359 ATTAATAAAATTT
1 ATTAATAAAATTT
519372 TATTCAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
13 5 0.22
14 7 0.30
15 3 0.13
16 8 0.35
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (16 bp):
ATTAATAAAATTTAAA
Found at i:519961 original size:20 final size:21
Alignment explanation
Indices: 519926--519965 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
519916 TTCTTTACTG
*
519926 GTTTTTCTTTTCCCTTTTTAA
1 GTTTTTCTTCTCCCTTTTTAA
519947 GTTTTTCTTCT-CCTTTTTA
1 GTTTTTCTTCTCCCTTTTTA
519966 TCATGCTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.07, C:0.20, G:0.05, T:0.68
Consensus pattern (21 bp):
GTTTTTCTTCTCCCTTTTTAA
Found at i:529964 original size:20 final size:20
Alignment explanation
Indices: 529939--529977 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
529929 AATCTTGCCA
529939 AATGTG-TTCTCAAGAAGTCG
1 AATGTGCTT-TCAAGAAGTCG
*
529959 AATGTGCTTTCAATAAGTC
1 AATGTGCTTTCAAGAAGTC
529978 AATCATTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (20 bp):
AATGTGCTTTCAAGAAGTCG
Found at i:539559 original size:19 final size:19
Alignment explanation
Indices: 539524--539570 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
539514 CAAATACCCT
539524 AAAAAATAATATTTAAAAC
1 AAAAAATAATATTTAAAAC
*
539543 AAAAGATAAT-TTCTAAAA-
1 AAAAAATAATATT-TAAAAC
539561 ATAAAAATAA
1 A-AAAAATAA
539571 GATAAATCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
18 3 0.12
19 21 0.88
ACGTcount: A:0.68, C:0.04, G:0.02, T:0.26
Consensus pattern (19 bp):
AAAAAATAATATTTAAAAC
Found at i:547288 original size:6 final size:6
Alignment explanation
Indices: 547277--547303 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
547267 ATTTACGCTC
547277 CTCACT CTCACT CTCACT CTCACT CTC
1 CTCACT CTCACT CTCACT CTCACT CTC
547304 CGTCCCTGAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.52, G:0.00, T:0.33
Consensus pattern (6 bp):
CTCACT
Found at i:555577 original size:20 final size:20
Alignment explanation
Indices: 555552--555594 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
555542 ACCATCTCGG
555552 TTATTTGATTAAATAAGTGA
1 TTATTTGATTAAATAAGTGA
*
555572 TTATTTGATTCAATAAGTGA
1 TTATTTGATTAAATAAGTGA
555592 TTA
1 TTA
555595 AAATCAAACA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.37, C:0.02, G:0.14, T:0.47
Consensus pattern (20 bp):
TTATTTGATTAAATAAGTGA
Found at i:564932 original size:3 final size:3
Alignment explanation
Indices: 564924--565002 Score: 76
Period size: 3 Copynumber: 27.0 Consensus size: 3
564914 TTTTCGTTTG
** * *
564924 TTA TTA TTA AAA TTA TTA TTA TT- TTA ATA TTA TTA TTA ATA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
564971 TTA -TA TTA TT- TTA -TA TTA TATA TTA TATA TTA
1 TTA TTA TTA TTA TTA TTA TTA T-TA TTA T-TA TTA
565003 CAAAATTTAT
Statistics
Matches: 62, Mismatches: 8, Indels: 12
0.76 0.10 0.15
Matches are distributed among these distances:
2 8 0.13
3 48 0.77
4 6 0.10
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:564998 original size:12 final size:11
Alignment explanation
Indices: 564935--565002 Score: 79
Period size: 11 Copynumber: 6.1 Consensus size: 11
564925 TATTATTAAA
564935 ATTATTATTATT
1 ATTA-TATTATT
564947 -TTAATATTATT
1 ATT-ATATTATT
564958 ATTAATATTATT
1 ATT-ATATTATT
564970 ATTATATTATT
1 ATTATATTATT
564981 -TTATATTATAT
1 ATTATATTAT-T
564992 ATTATA-TATT
1 ATTATATTATT
565002 A
1 A
565003 CAAAATTTAT
Statistics
Matches: 52, Mismatches: 0, Indels: 10
0.84 0.00 0.16
Matches are distributed among these distances:
10 11 0.21
11 21 0.40
12 20 0.38
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
ATTATATTATT
Found at i:565002 original size:14 final size:13
Alignment explanation
Indices: 564935--565002 Score: 72
Period size: 14 Copynumber: 5.3 Consensus size: 13
564925 TATTATTAAA
564935 ATTAT-TATTATT
1 ATTATATATTATT
564947 -TTA-ATATTATT
1 ATTATATATTATT
564958 ATTA-ATATTATT
1 ATTATATATTATT
*
564970 ATTATATTATTTTAT
1 ATTATA-TATTAT-T
564985 ATTATATATTATAT
1 ATTATATATTAT-T
564999 ATTA
1 ATTA
565003 CAAAATTTAT
Statistics
Matches: 49, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
11 10 0.20
12 15 0.31
13 1 0.02
14 16 0.33
15 7 0.14
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
ATTATATATTATT
Found at i:567330 original size:12 final size:13
Alignment explanation
Indices: 567305--567333 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
567295 ATTTAATCAC
567305 TTTTGTTTCTTTT
1 TTTTGTTTCTTTT
567318 TTTTGTTTCTTTT
1 TTTTGTTTCTTTT
567331 TTT
1 TTT
567334 CTGACACTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.00, C:0.07, G:0.07, T:0.86
Consensus pattern (13 bp):
TTTTGTTTCTTTT
Found at i:568052 original size:21 final size:21
Alignment explanation
Indices: 567994--568053 Score: 52
Period size: 21 Copynumber: 2.9 Consensus size: 21
567984 TAGGTCATTG
567994 ATTATTAA-TAAAATTT-AAAA
1 ATTA-TAATTAAAATTTAAAAA
* * **
568014 ATATATCATTGAGTTTTAAAAA
1 AT-TATAATTAAAATTTAAAAA
568036 ATTATAATTAAAATTTAA
1 ATTATAATTAAAATTTAA
568054 TTAATTTAAC
Statistics
Matches: 29, Mismatches: 8, Indels: 5
0.69 0.19 0.12
Matches are distributed among these distances:
20 4 0.14
21 19 0.66
22 6 0.21
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.42
Consensus pattern (21 bp):
ATTATAATTAAAATTTAAAAA
Found at i:569019 original size:10 final size:10
Alignment explanation
Indices: 568990--569077 Score: 85
Period size: 10 Copynumber: 9.1 Consensus size: 10
568980 GCTGCTGGAA
568990 AACCGGTTTG
1 AACCGGTTTG
*
569000 -ACCAGTTTTG
1 AACC-GGTTTG
569010 AACCGGTTTG
1 AACCGGTTTG
*
569020 -ACCGGTTCG
1 AACCGGTTTG
*
569029 AACCGATTTG
1 AACCGGTTTG
*
569039 -ACCGGTCTG
1 AACCGGTTTG
569048 AACCGGTTTG
1 AACCGGTTTG
*
569058 -ACCGGTCTG
1 AACCGGTTTG
*
569067 AACCGGGTTG
1 AACCGGTTTG
569077 A
1 A
569078 CCCGACCCGA
Statistics
Matches: 62, Mismatches: 11, Indels: 10
0.75 0.13 0.12
Matches are distributed among these distances:
9 26 0.42
10 33 0.53
11 3 0.05
ACGTcount: A:0.19, C:0.24, G:0.30, T:0.27
Consensus pattern (10 bp):
AACCGGTTTG
Found at i:569033 original size:19 final size:19
Alignment explanation
Indices: 568990--569079 Score: 119
Period size: 19 Copynumber: 4.7 Consensus size: 19
568980 GCTGCTGGAA
* *
568990 AACCGGTTTGACCAGTTTTG
1 AACCGGTTTGACC-GGTCTG
569010 AACCGGTTTGACCGGT-TCG
1 AACCGGTTTGACCGGTCT-G
*
569029 AACCGATTTGACCGGTCTG
1 AACCGGTTTGACCGGTCTG
569048 AACCGGTTTGACCGGTCTG
1 AACCGGTTTGACCGGTCTG
*
569067 AACCGGGTTGACC
1 AACCGGTTTGACC
569080 CGACCCGACC
Statistics
Matches: 64, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
18 1 0.02
19 49 0.77
20 14 0.22
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.27
Consensus pattern (19 bp):
AACCGGTTTGACCGGTCTG
Found at i:569103 original size:17 final size:17
Alignment explanation
Indices: 569081--569118 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
569071 GGGTTGACCC
*
569081 GACCCGACCCGACTGTT
1 GACCCGACCCGACCGTT
569098 GACCCGACCCGACCGTT
1 GACCCGACCCGACCGTT
569115 GACC
1 GACC
569119 GTTGACCGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.18, C:0.45, G:0.24, T:0.13
Consensus pattern (17 bp):
GACCCGACCCGACCGTT
Found at i:569120 original size:7 final size:7
Alignment explanation
Indices: 569108--569138 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
569098 GACCCGACCC
569108 GACCGTT
1 GACCGTT
569115 GACCGTT
1 GACCGTT
569122 GACCGTT
1 GACCGTT
569129 GACCGTT
1 GACCGTT
569136 GAC
1 GAC
569139 TTCCTTTGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.16, C:0.29, G:0.29, T:0.26
Consensus pattern (7 bp):
GACCGTT
Found at i:571151 original size:161 final size:162
Alignment explanation
Indices: 570886--571208 Score: 623
Period size: 161 Copynumber: 2.0 Consensus size: 162
570876 CGTGGTCGTC
570886 GAACTAGCCGTGGACGAGGTCGAGTGGTTAGATTTGCAGATCCGATCGATGAGATACGATAGATC
1 GAACTAGCCGTGGACGAGGTCGAGTGGTTAGATTTGCAGATCCGATCGATGAGATACGATAGATC
570951 CCCCCACCTCCGATAGGTGATCCTGCTCCTACGACCCCAATGAATCTGCCTCCTA-CGATGGTAT
66 CCCCCACCTCCGATAGGTGATCCTGCTCCTACGACCCCAATGAATCTGCCTCCTACCGATGGTAT
571015 TGGCATGACTACACCGATCATAGGAGCGACCG
131 TGGCATGACTACACCGATCATAGGAGCGACCG
571047 GAACTAGCCGTGGACGAGGTCGAGTGGTTAGATTTGCAGATCCGATCGATGAGATACGAGTAGAT
1 GAACTAGCCGTGGACGAGGTCGAGTGGTTAGATTTGCAGATCCGATCGATGAGATACGA-TAGAT
571112 -CCCCCACCTCCGATAGGTGATCCTGCTCCTACGACCCCAATGAATCTGCCTCCTACCGATGGTA
65 CCCCCCACCTCCGATAGGTGATCCTGCTCCTACGACCCCAATGAATCTGCCTCCTACCGATGGTA
571176 TTGGCATGACTACACCGATCATAGGAGCGACCG
130 TTGGCATGACTACACCGATCATAGGAGCGACCG
571209 ATATTGAGTC
Statistics
Matches: 160, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
161 114 0.71
162 46 0.29
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.22
Consensus pattern (162 bp):
GAACTAGCCGTGGACGAGGTCGAGTGGTTAGATTTGCAGATCCGATCGATGAGATACGATAGATC
CCCCCACCTCCGATAGGTGATCCTGCTCCTACGACCCCAATGAATCTGCCTCCTACCGATGGTAT
TGGCATGACTACACCGATCATAGGAGCGACCG
Found at i:576294 original size:10 final size:10
Alignment explanation
Indices: 576265--576352 Score: 85
Period size: 10 Copynumber: 9.1 Consensus size: 10
576255 GCTGCTGGAA
576265 AACCGGTTTG
1 AACCGGTTTG
*
576275 -ACCAGTTTTG
1 AACC-GGTTTG
576285 AACCGGTTTG
1 AACCGGTTTG
*
576295 -ACCGGTTCG
1 AACCGGTTTG
*
576304 AACCGATTTG
1 AACCGGTTTG
*
576314 -ACCGGTCTG
1 AACCGGTTTG
576323 AACCGGTTTG
1 AACCGGTTTG
*
576333 -ACCGGTCTG
1 AACCGGTTTG
*
576342 AACCGGGTTG
1 AACCGGTTTG
576352 A
1 A
576353 CCCGACCCGA
Statistics
Matches: 62, Mismatches: 11, Indels: 10
0.75 0.13 0.12
Matches are distributed among these distances:
9 26 0.42
10 33 0.53
11 3 0.05
ACGTcount: A:0.19, C:0.24, G:0.30, T:0.27
Consensus pattern (10 bp):
AACCGGTTTG
Found at i:576308 original size:19 final size:19
Alignment explanation
Indices: 576265--576354 Score: 119
Period size: 19 Copynumber: 4.7 Consensus size: 19
576255 GCTGCTGGAA
* *
576265 AACCGGTTTGACCAGTTTTG
1 AACCGGTTTGACC-GGTCTG
576285 AACCGGTTTGACCGGT-TCG
1 AACCGGTTTGACCGGTCT-G
*
576304 AACCGATTTGACCGGTCTG
1 AACCGGTTTGACCGGTCTG
576323 AACCGGTTTGACCGGTCTG
1 AACCGGTTTGACCGGTCTG
*
576342 AACCGGGTTGACC
1 AACCGGTTTGACC
576355 CGACCCGACC
Statistics
Matches: 64, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
18 1 0.02
19 49 0.77
20 14 0.22
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.27
Consensus pattern (19 bp):
AACCGGTTTGACCGGTCTG
Found at i:576378 original size:17 final size:17
Alignment explanation
Indices: 576356--576393 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
576346 GGGTTGACCC
*
576356 GACCCGACCCGACTGTT
1 GACCCGACCCGACCGTT
576373 GACCCGACCCGACCGTT
1 GACCCGACCCGACCGTT
576390 GACC
1 GACC
576394 GTTGACCGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.18, C:0.45, G:0.24, T:0.13
Consensus pattern (17 bp):
GACCCGACCCGACCGTT
Found at i:581425 original size:2 final size:2
Alignment explanation
Indices: 581420--581458 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
581410 TATATCTGTC
581420 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
581459 GGGTGTGGGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:581481 original size:14 final size:14
Alignment explanation
Indices: 581462--581494 Score: 52
Period size: 12 Copynumber: 2.5 Consensus size: 14
581452 TATATATGGG
581462 TGTGGGTGTAATTC
1 TGTGGGTGTAATTC
581476 TGT-GG-GTAATTC
1 TGTGGGTGTAATTC
581488 TGTGGGT
1 TGTGGGT
581495 TTGATTGGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 4
0.81 0.00 0.19
Matches are distributed among these distances:
12 10 0.59
13 4 0.24
14 3 0.18
ACGTcount: A:0.12, C:0.06, G:0.39, T:0.42
Consensus pattern (14 bp):
TGTGGGTGTAATTC
Found at i:583635 original size:12 final size:13
Alignment explanation
Indices: 583618--583744 Score: 89
Period size: 12 Copynumber: 10.6 Consensus size: 13
583608 TTCAAACAGG
583618 TTTTATAT-TTAA
1 TTTTATATATTAA
583630 -TTT-TATATTATA
1 TTTTATATATTA-A
*
583642 TTTGAT-T-TTAA
1 TTTTATATATTAA
583653 TTTTA-ATATTAA
1 TTTTATATATTAA
*
583665 TTTT-TA-AATAA
1 TTTTATATATTAA
* *
583676 -ATTAAATATTAA
1 TTTTATATATTAA
583688 TTTTA-ATATT-A
1 TTTTATATATTAA
*
583699 TATTATATATTAA
1 TTTTATATATTAA
583712 TTTTA-ATATTAA
1 TTTTATATATTAA
* * *
583724 TTTTTTAAATTTA
1 TTTTATATATTAA
583737 TTTTATAT
1 TTTTATAT
583745 CATATAAATT
Statistics
Matches: 88, Mismatches: 14, Indels: 25
0.69 0.11 0.20
Matches are distributed among these distances:
10 5 0.06
11 22 0.25
12 38 0.43
13 22 0.25
14 1 0.01
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.61
Consensus pattern (13 bp):
TTTTATATATTAA
Found at i:583739 original size:13 final size:14
Alignment explanation
Indices: 583653--583768 Score: 51
Period size: 16 Copynumber: 7.9 Consensus size: 14
583643 TTGATTTTAA
583653 TTTTAATATTAATT
1 TTTTAATATTAATT
* *
583667 TTTAAATAAATTAA-A
1 TTTTAAT--ATTAATT
* *
583682 TATTAATTTTAATAT
1 TTTTAATATTAAT-T
583697 TATATTATATATTAA--
1 T-T-TTA-ATATTAATT
583712 TTTTAATATTAATT
1 TTTTAATATTAATT
*
583726 TTTTAA-ATTTATT
1 TTTTAATATTAATT
* *
583739 TTATATCATATAAATT
1 TT-T-TAATATTAATT
583755 ATTTTATATATTAA
1 -TTTTA-ATATTAA
583769 AAATTTTATA
Statistics
Matches: 74, Mismatches: 14, Indels: 26
0.65 0.12 0.23
Matches are distributed among these distances:
12 7 0.09
13 15 0.20
14 14 0.19
15 10 0.14
16 17 0.23
17 5 0.07
18 6 0.08
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.57
Consensus pattern (14 bp):
TTTTAATATTAATT
Found at i:583758 original size:19 final size:17
Alignment explanation
Indices: 583728--583779 Score: 61
Period size: 19 Copynumber: 2.9 Consensus size: 17
583718 TATTAATTTT
583728 TTAAATTTATTTTATATCA
1 TTAAA-TTATTTTATAT-A
583747 TATAAATTATTTTATATA
1 T-TAAATTATTTTATATA
*
583765 TTAAA-AATTTTATAT
1 TTAAATTATTTTATAT
583780 TTATTTTAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
16 9 0.29
17 4 0.13
18 2 0.06
19 12 0.39
20 4 0.13
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (17 bp):
TTAAATTATTTTATATA
Found at i:583774 original size:16 final size:19
Alignment explanation
Indices: 583736--583779 Score: 58
Period size: 16 Copynumber: 2.5 Consensus size: 19
583726 TTTTAAATTT
*
583736 ATTTTATATCATATAAATT
1 ATTTTATATCATATAAATA
583755 ATTTTATAT-AT-TAAA-A
1 ATTTTATATCATATAAATA
583771 ATTTTATAT
1 ATTTTATAT
583780 TTATTTTAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 9 0.38
17 4 0.17
18 2 0.08
19 9 0.38
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (19 bp):
ATTTTATATCATATAAATA
Found at i:584925 original size:14 final size:14
Alignment explanation
Indices: 584906--584943 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
584896 AAAAAAATAT
584906 AATTTATTTTTCAG
1 AATTTATTTTTCAG
*
584920 AATTTAATTTTCAG
1 AATTTATTTTTCAG
584934 AATTTATTTT
1 AATTTATTTT
584944 CAGTATATCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (14 bp):
AATTTATTTTTCAG
Found at i:585615 original size:30 final size:30
Alignment explanation
Indices: 585565--585641 Score: 111
Period size: 30 Copynumber: 2.5 Consensus size: 30
585555 CTTTTAAAAC
**
585565 TTGCAATACAGTCTCCCAACATTTATT-CTGT
1 TTGCAATATGGTC-CCCAACATTTATTCCT-T
585596 TTGCAATATGGTCCCCAACATTTATTCCTT
1 TTGCAATATGGTCCCCAACATTTATTCCTT
585626 TTGCAATATGGTCCCC
1 TTGCAATATGGTCCCC
585642 CAACTTAAAC
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
30 30 0.70
31 13 0.30
ACGTcount: A:0.23, C:0.27, G:0.12, T:0.38
Consensus pattern (30 bp):
TTGCAATATGGTCCCCAACATTTATTCCTT
Found at i:586278 original size:35 final size:36
Alignment explanation
Indices: 586229--586337 Score: 121
Period size: 36 Copynumber: 3.1 Consensus size: 36
586219 TCTAAACCTT
** * *
586229 AAATTGAAGCATTTTAGAATTTGGGGTTTAAAAT-T
1 AAATTGAATTATTTTGGAATTTGGGGTTTAAAATGA
* * *
586264 TAATTGAATTATTTTGGAATTTAGGGTTTAGAATGA
1 AAATTGAATTATTTTGGAATTTGGGGTTTAAAATGA
* * *
586300 AAATTGAATTACTTTGGAAATTGGGGTTTAGAATGA
1 AAATTGAATTATTTTGGAATTTGGGGTTTAAAATGA
586336 AA
1 AA
586338 TTAAGGACTA
Statistics
Matches: 62, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
35 28 0.45
36 34 0.55
ACGTcount: A:0.37, C:0.02, G:0.22, T:0.39
Consensus pattern (36 bp):
AAATTGAATTATTTTGGAATTTGGGGTTTAAAATGA
Found at i:592854 original size:2 final size:2
Alignment explanation
Indices: 592847--592875 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
592837 AGACGTTCAG
592847 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
592876 GAATAAACCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:602830 original size:132 final size:132
Alignment explanation
Indices: 602593--602857 Score: 530
Period size: 132 Copynumber: 2.0 Consensus size: 132
602583 ATAGCCAAAC
602593 ATGTAAATGATAAAGCATCTCACTTGTTATGAACGAGATCACCCTTCACAGAGTTTATGTAAATA
1 ATGTAAATGATAAAGCATCTCACTTGTTATGAACGAGATCACCCTTCACAGAGTTTATGTAAATA
602658 AACTCCTAAAAGCATAATTTAACCTTCAAAGCAATGGACACATTGAGCATCTCACTTGTTATGAA
66 AACTCCTAAAAGCATAATTTAACCTTCAAAGCAATGGACACATTGAGCATCTCACTTGTTATGAA
602723 CG
131 CG
602725 ATGTAAATGATAAAGCATCTCACTTGTTATGAACGAGATCACCCTTCACAGAGTTTATGTAAATA
1 ATGTAAATGATAAAGCATCTCACTTGTTATGAACGAGATCACCCTTCACAGAGTTTATGTAAATA
602790 AACTCCTAAAAGCATAATTTAACCTTCAAAGCAATGGACACATTGAGCATCTCACTTGTTATGAA
66 AACTCCTAAAAGCATAATTTAACCTTCAAAGCAATGGACACATTGAGCATCTCACTTGTTATGAA
602855 CG
131 CG
602857 A
1 A
602858 GATCACCCTT
Statistics
Matches: 133, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
132 133 1.00
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (132 bp):
ATGTAAATGATAAAGCATCTCACTTGTTATGAACGAGATCACCCTTCACAGAGTTTATGTAAATA
AACTCCTAAAAGCATAATTTAACCTTCAAAGCAATGGACACATTGAGCATCTCACTTGTTATGAA
CG
Found at i:602869 original size:97 final size:97
Alignment explanation
Indices: 602738--602935 Score: 396
Period size: 97 Copynumber: 2.0 Consensus size: 97
602728 TAAATGATAA
602738 AGCATCTCACTTGTTATGAACGAGATCACCCTTCACAGAGTTTATGTAAATAAACTCCTAAAAGC
1 AGCATCTCACTTGTTATGAACGAGATCACCCTTCACAGAGTTTATGTAAATAAACTCCTAAAAGC
602803 ATAATTTAACCTTCAAAGCAATGGACACATTG
66 ATAATTTAACCTTCAAAGCAATGGACACATTG
602835 AGCATCTCACTTGTTATGAACGAGATCACCCTTCACAGAGTTTATGTAAATAAACTCCTAAAAGC
1 AGCATCTCACTTGTTATGAACGAGATCACCCTTCACAGAGTTTATGTAAATAAACTCCTAAAAGC
602900 ATAATTTAACCTTCAAAGCAATGGACACATTG
66 ATAATTTAACCTTCAAAGCAATGGACACATTG
602932 AGCA
1 AGCA
602936 AGTAATTTGA
Statistics
Matches: 101, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
97 101 1.00
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.27
Consensus pattern (97 bp):
AGCATCTCACTTGTTATGAACGAGATCACCCTTCACAGAGTTTATGTAAATAAACTCCTAAAAGC
ATAATTTAACCTTCAAAGCAATGGACACATTG
Found at i:610798 original size:60 final size:60
Alignment explanation
Indices: 610712--610879 Score: 169
Period size: 60 Copynumber: 2.8 Consensus size: 60
610702 TCTGGATGAA
* * ** *
610712 TTTAGGGAGGAAATTGGAATATTCAAAAGTTTGGGGACTAATTTAAAAAGAGGGTCATAG
1 TTTACGGAGGAAATTAGAATATTCAAAAGTTTAAGGACTAATTTAAAAAGAGAGTCATAG
* * * *
610772 TTTACGGATGAAATTAGATTATTCAAAAGTTTAAGGACTAATTTAGAATGAGAGTCATAG
1 TTTACGGAGGAAATTAGAATATTCAAAAGTTTAAGGACTAATTTAAAAAGAGAGTCATAG
* * ** * *
610832 TAT-GGGTCTGAAATTAAAATATTCAAAAATTTAA-GATCTAATTTAAAA
1 TTTACGG-AGGAAATTAGAATATTCAAAAGTTTAAGGA-CTAATTTAAAA
610880 TTAGAGTTAG
Statistics
Matches: 90, Mismatches: 16, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
59 4 0.04
60 86 0.96
ACGTcount: A:0.42, C:0.06, G:0.20, T:0.32
Consensus pattern (60 bp):
TTTACGGAGGAAATTAGAATATTCAAAAGTTTAAGGACTAATTTAAAAAGAGAGTCATAG
Found at i:615413 original size:12 final size:12
Alignment explanation
Indices: 615398--615441 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
615388 GCATGTAATA
*
615398 CATACATGCATG
1 CATACATACATG
615410 CATACATACATG
1 CATACATACATG
** *
615422 CATGTATACATA
1 CATACATACATG
615434 CATACATA
1 CATACATA
615442 TCTGAATCTA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.41, C:0.23, G:0.09, T:0.27
Consensus pattern (12 bp):
CATACATACATG
Found at i:615416 original size:16 final size:16
Alignment explanation
Indices: 615395--615436 Score: 75
Period size: 16 Copynumber: 2.6 Consensus size: 16
615385 ATCGCATGTA
615395 ATACATACATGCATGC
1 ATACATACATGCATGC
*
615411 ATACATACATGCATGT
1 ATACATACATGCATGC
615427 ATACATACAT
1 ATACATACAT
615437 ACATATCTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (16 bp):
ATACATACATGCATGC
Found at i:616514 original size:16 final size:16
Alignment explanation
Indices: 616490--616520 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
616480 CTGAAGTTTA
616490 TATGAATATATATATG
1 TATGAATATATATATG
*
616506 TATGTATATATATAT
1 TATGAATATATATAT
616521 ATAAACACAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.10, T:0.48
Consensus pattern (16 bp):
TATGAATATATATATG
Found at i:617095 original size:2 final size:2
Alignment explanation
Indices: 617088--617117 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
617078 GAAGACATTA
*
617088 AT AT AT AT AT AA AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
617118 GTTATGTCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:618934 original size:2 final size:2
Alignment explanation
Indices: 618927--618965 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
618917 ATTGGAAAAT
618927 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
618966 CAACAACAAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:619134 original size:24 final size:23
Alignment explanation
Indices: 619092--619136 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
619082 GAAATTAAAA
* *
619092 ATAAATATAAAATACATGCATGT
1 ATAAATAAAAAATAAATGCATGT
619115 ATAAATAAATAAATAAATGCAT
1 ATAAATAAA-AAATAAATGCAT
619137 AGTTTATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.58, C:0.07, G:0.07, T:0.29
Consensus pattern (23 bp):
ATAAATAAAAAATAAATGCATGT
Found at i:621221 original size:31 final size:32
Alignment explanation
Indices: 621186--621266 Score: 110
Period size: 32 Copynumber: 2.6 Consensus size: 32
621176 CATAACGTTT
* * *
621186 ACTTTTTATTTCATTTTAGTA-CCCGTTGTTA
1 ACTTTTTGTTTCATTTTAGTACCCCGCTATTA
* *
621217 ACTTTTTGTATCATTTCAGTACCCCGCTATTA
1 ACTTTTTGTTTCATTTTAGTACCCCGCTATTA
621249 ACTTTTTGTTTCATTTTA
1 ACTTTTTGTTTCATTTTA
621267 ATACTTAAAG
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
31 18 0.43
32 24 0.57
ACGTcount: A:0.20, C:0.19, G:0.09, T:0.53
Consensus pattern (32 bp):
ACTTTTTGTTTCATTTTAGTACCCCGCTATTA
Found at i:624145 original size:4 final size:4
Alignment explanation
Indices: 624129--624179 Score: 84
Period size: 4 Copynumber: 12.8 Consensus size: 4
624119 TAAGTAATGT
* *
624129 ATAC ATAC GTAC ATAC ATAC ATAC GTAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
624177 ATA
1 ATA
624180 TACATTGAGG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
4 43 1.00
ACGTcount: A:0.47, C:0.24, G:0.04, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:624150 original size:16 final size:16
Alignment explanation
Indices: 624129--624179 Score: 93
Period size: 16 Copynumber: 3.2 Consensus size: 16
624119 TAAGTAATGT
624129 ATACATACGTACATAC
1 ATACATACGTACATAC
624145 ATACATACGTACATAC
1 ATACATACGTACATAC
*
624161 ATACATACATACATAC
1 ATACATACGTACATAC
624177 ATA
1 ATA
624180 TACATTGAGG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.47, C:0.24, G:0.04, T:0.25
Consensus pattern (16 bp):
ATACATACGTACATAC
Found at i:627159 original size:2 final size:2
Alignment explanation
Indices: 627152--627191 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
627142 CTAAAGCTAA
627152 AT AT AT AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
627192 TAAATATTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
1 2 0.06
2 34 0.94
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:631123 original size:24 final size:23
Alignment explanation
Indices: 631088--631132 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
631078 TGAATAAGCT
631088 CTTCTCATTATGAACTTCTTCTTC
1 CTTCTCATTATG-ACTTCTTCTTC
*
631112 CTTCTTCA-TATGAGTTCTTCT
1 CTTC-TCATTATGACTTCTTCT
631133 CATTATGAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 8 0.42
24 8 0.42
25 3 0.16
ACGTcount: A:0.16, C:0.27, G:0.07, T:0.51
Consensus pattern (23 bp):
CTTCTCATTATGACTTCTTCTTC
Found at i:631257 original size:112 final size:112
Alignment explanation
Indices: 631087--631368 Score: 494
Period size: 112 Copynumber: 2.5 Consensus size: 112
631077 TTGAATAAGC
* *
631087 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCATATGAGTTCTTCTCATTATGAACTTTCTCTGG
1 TCTTCTCATTATGAACTTCTTCTTCC-TCTTCAGATAAGTTCTTCTCATTATGAACTTTCTCTGG
631152 AAAAGTTAATCCATCAAGTGATGAATTC-AGGCAAAAGGTTAAACAAAT
65 AAAAGTTAATCCATCAAGTGATGAATTCGA-GCAAAAGGTTAAACAAAT
*
631200 TCTTCTCATTATGAATTTCTTCTTCCTCTTCAGATAAGTTCTTCTCATTATGAACTTTCTCTGGA
1 TCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATAAGTTCTTCTCATTATGAACTTTCTCTGGA
* *
631265 AATGTTAATCCATCAAGTGATGAATTCGAGCAAAAGGTTAAACAAGT
66 AAAGTTAATCCATCAAGTGATGAATTCGAGCAAAAGGTTAAACAAAT
631312 TCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATAAGTTCTTCTCATTATGAACTT
1 TCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATAAGTTCTTCTCATTATGAACTT
631369 CTTCTTCCTC
Statistics
Matches: 162, Mismatches: 6, Indels: 3
0.95 0.04 0.02
Matches are distributed among these distances:
112 136 0.84
113 26 0.16
ACGTcount: A:0.28, C:0.20, G:0.12, T:0.40
Consensus pattern (112 bp):
TCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATAAGTTCTTCTCATTATGAACTTTCTCTGGA
AAAGTTAATCCATCAAGTGATGAATTCGAGCAAAAGGTTAAACAAAT
Found at i:631351 original size:39 final size:39
Alignment explanation
Indices: 631308--631407 Score: 200
Period size: 39 Copynumber: 2.6 Consensus size: 39
631298 AAGGTTAAAC
631308 AAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGAT
1 AAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGAT
631347 AAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGAT
1 AAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGAT
631386 AAGTTCTTCTCATTATGAACTT
1 AAGTTCTTCTCATTATGAACTT
631408 TCTCTGGAAA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 61 1.00
ACGTcount: A:0.22, C:0.24, G:0.08, T:0.46
Consensus pattern (39 bp):
AAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGAT
Found at i:631355 original size:19 final size:19
Alignment explanation
Indices: 631331--631394 Score: 53
Period size: 19 Copynumber: 3.3 Consensus size: 19
631321 TATGAACTTC
631331 TTCTTCCTCTTCAGATAAG
1 TTCTTCCTCTTCAGATAAG
**
631350 TTCTT-CTCATT-ATGA-ACTTC
1 TTCTTCCTC-TTCA-GATA--AG
631370 TTCTTCCTCTTCAGATAAG
1 TTCTTCCTCTTCAGATAAG
631389 TTCTTC
1 TTCTTC
631395 TCATTATGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 14
0.65 0.08 0.27
Matches are distributed among these distances:
18 5 0.15
19 15 0.44
20 9 0.26
21 5 0.15
ACGTcount: A:0.19, C:0.27, G:0.08, T:0.47
Consensus pattern (19 bp):
TTCTTCCTCTTCAGATAAG
Found at i:631355 original size:22 final size:22
Alignment explanation
Indices: 631328--631395 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 22
631318 CATTATGAAC
631328 TTCTTCTTCCTCTTCAGATAAG
1 TTCTTCTTCCTCTTCAGATAAG
* *
631350 TTCTTC-T-C-ATT---ATGAAC
1 TTCTTCTTCCTCTTCAGAT-AAG
631367 TTCTTCTTCCTCTTCAGATAAG
1 TTCTTCTTCCTCTTCAGATAAG
631389 TTCTTCT
1 TTCTTCT
631396 CATTATGAAC
Statistics
Matches: 35, Mismatches: 4, Indels: 14
0.66 0.08 0.26
Matches are distributed among these distances:
16 2 0.06
17 8 0.23
18 1 0.03
19 3 0.09
20 3 0.09
21 1 0.03
22 15 0.43
23 2 0.06
ACGTcount: A:0.18, C:0.26, G:0.07, T:0.49
Consensus pattern (22 bp):
TTCTTCTTCCTCTTCAGATAAG
Found at i:631373 original size:151 final size:151
Alignment explanation
Indices: 631199--631518 Score: 516
Period size: 151 Copynumber: 2.1 Consensus size: 151
631189 GTTAAACAAA
*
631199 TTCTTCTCATTATGAATTTCTTCTTCCTCTTCAGATAAGTTCTTCTCATTATGAACTTTCTCTGG
1 TTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATAAGTTCTTCTCATTATGAACTTTCTCTGG
*** *
631264 AAATGTTAATCCATCAAGTGATGAATTCGA-GCAAAAGGTTAAACAAGTTCTTCTCATTATGAAC
66 AAAAAATAATCCATCAAGTGATGAATT-GAGGCAAAAGGTTAAACAAATTCTTCTCATTATGAAC
*
631328 TTCTTCTTCCTCTTCAGATAAG
130 TTATTCTTCCTCTTCAGATAAG
631350 TTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATAAGTTCTTCTCATTATGAACTTTCTCTGG
1 TTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATAAGTTCTTCTCATTATGAACTTTCTCTGG
* * * * *
631415 AAAAAATAATTCATCAAGTGATGAATTTAGGGAAAAGGTTGAACAAATTCTTCTCATTATGAATT
66 AAAAAATAATCCATCAAGTGATGAATTGAGGCAAAAGGTTAAACAAATTCTTCTCATTATGAACT
*
631480 TATTCTTCCTCTTCAGATGAG
131 TATTCTTCCTCTTCAGATAAG
631501 TTCTTCTCATTATGAACT
1 TTCTTCTCATTATGAACT
631519 CTAACTGGCA
Statistics
Matches: 156, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
150 1 0.01
151 155 0.99
ACGTcount: A:0.28, C:0.19, G:0.12, T:0.41
Consensus pattern (151 bp):
TTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATAAGTTCTTCTCATTATGAACTTTCTCTGG
AAAAAATAATCCATCAAGTGATGAATTGAGGCAAAAGGTTAAACAAATTCTTCTCATTATGAACT
TATTCTTCCTCTTCAGATAAG
Found at i:631413 original size:263 final size:264
Alignment explanation
Indices: 631080--631630 Score: 834
Period size: 263 Copynumber: 2.1 Consensus size: 264
631070 ACAAAGGTTG
* * *
631080 AATAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCATATGAGTTCTTCTCATTATGAACTT
1 AATAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGAACTT
**
631145 TCTCTGGAAAAGTTAATCCATCAAGTGATGAATTCAGGCAAAAGGTTAAACAAATTCTTCTCATT
66 TCTCTGGAAAAAATAATCCATCAAGTGATGAATTCAGGCAAAAGGTTAAACAAATTCTTCTCATT
* * ** *
631210 ATGAATTTCTTCTTCCTCTTCAGATAAGTTCTTCTCATTATGAACTTTCTCTGGAAATGTTAATC
131 ATGAATTTATTCTTCCTCTTCAGATAAGTTCTTCTCATTATGAACTCTAACTGGAAATGCTAATC
* * *
631275 CATCAAGTGATGAATTCGAGCAAAAGGTTAAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTC
196 CACCAAGTGATGAATTCAAGCAAAAAGTTAAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTC
631340 TTCA
261 TTCA
*
631344 GATAAGTTCTTCTCATTATGAACTTCTTCTTCC-TCTTCAGATAAGTTCTTCTCATTATGAACTT
1 AATAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGAACTT
* * * *
631408 TCTCTGGAAAAAATAATTCATCAAGTGATGAATTTAGGGAAAAGGTTGAACAAATTCTTCTCATT
66 TCTCTGGAAAAAATAATCCATCAAGTGATGAATTCAGGCAAAAGGTTAAACAAATTCTTCTCATT
* * * *
631473 ATGAATTTATTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTGGCACTGCTGATC
131 ATGAATTTATTCTTCCTCTTCAGATAAGTTCTTCTCATTATGAACTCTAACTGGAAATGCTAATC
** * * * *
631538 CACCGGGTGATGAATTTAAGTAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTC
196 CACCAAGTGATGAATTCAAGCAAAAAGTTAAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTC
631603 TTCA
261 TTCA
*
631607 AATGAGTTCTTCTCATTATGAACT
1 AATAAGTTCTTCTCATTATGAACT
631631 CTAACTGGTA
Statistics
Matches: 257, Mismatches: 30, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
263 226 0.88
264 31 0.12
ACGTcount: A:0.29, C:0.20, G:0.13, T:0.39
Consensus pattern (264 bp):
AATAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGAACTT
TCTCTGGAAAAAATAATCCATCAAGTGATGAATTCAGGCAAAAGGTTAAACAAATTCTTCTCATT
ATGAATTTATTCTTCCTCTTCAGATAAGTTCTTCTCATTATGAACTCTAACTGGAAATGCTAATC
CACCAAGTGATGAATTCAAGCAAAAAGTTAAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTC
TTCA
Found at i:631785 original size:113 final size:113
Alignment explanation
Indices: 631347--631891 Score: 697
Period size: 112 Copynumber: 4.9 Consensus size: 113
631337 CTCTTCAGAT
* * *
631347 AAGTTCTTCTCATTATGAACTTCTTCTTCC-TCTTCAGATAAGTTCTTCTCATTATGAACTTTCT
1 AAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTCA
** * * * * *
631411 CTGGAAAAAATAATTCATC-AAGTGATGAATTTAGGGAAAAGGTTGAAC
66 CTGGAAATGATGATCCATCGAA-TGATGAATTTAAGCAAAAAGTTGAAC
* * * *
631459 AAATTCTTCTCATTATGAATTTATTCTTCC-TCTTCAGATGAGTTCTTCTCATTATGAACTCTAA
1 AAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTCA
* * * * ** *
631523 CTGGCACTGCTGATCCACCGGGTGATGAATTTAAGTAAAAAGTTGAAC
66 CTGGAAATGATGATCCATCGAATGATGAATTTAAGCAAAAAGTTGAAC
* *
631571 AAGTTCTTCTCATTATGAACTTCTTCTT-CTTCTTCAAATGAGTTCTTCTCATTATGAACTCTAA
1 AAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTCA
* *
631635 CTGGTAATGATGATCCATCAAATGATGAATTTAAGCAAAAAGTTGAAC
66 CTGGAAATGATGATCCATCGAATGATGAATTTAAGCAAAAAGTTGAAC
* *
631683 AAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCT
1 AAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTCA
* * * *
631748 CTGGAAATGCTGATCCATCGAATGATGGATTTGAGCAAAAGGTTGAAC
66 CTGGAAATGATGATCCATCGAATGATGAATTTAAGCAAAAAGTTGAAC
* * *
631796 AAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTC-GA
1 AAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTCA
* * *
631860 CCTGG-AATGTTGATCCATTGAATGATGGATTT
66 -CTGGAAATGATGATCCATCGAATGATGAATTT
631892 GAACTTTGCT
Statistics
Matches: 380, Mismatches: 49, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
111 1 0.00
112 242 0.64
113 137 0.36
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (113 bp):
AAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTCA
CTGGAAATGATGATCCATCGAATGATGAATTTAAGCAAAAAGTTGAAC
Found at i:632318 original size:22 final size:22
Alignment explanation
Indices: 632293--632347 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
632283 GATAAAGCTT
*
632293 TCATCTTTGAAAAGAGAATCTG
1 TCATCTTTGAAAAGAGAATCTA
* *
632315 TCATCTTTAAAAAGGGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
*
632337 CCATCTTTGAA
1 TCATCTTTGAA
632348 GAGTGTAGAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:641084 original size:15 final size:15
Alignment explanation
Indices: 641064--641114 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
641054 TATAATAAAT
641064 AAATAAAATAAAAAA
1 AAATAAAATAAAAAA
* *
641079 AAATAATATATAAAA
1 AAATAAAATAAAAAA
*
641094 AAATAATAAGTAATAAA
1 AAATAA-AA-TAAAAAA
641111 AAAT
1 AAAT
641115 TTGAAAGAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
15 19 0.66
16 1 0.03
17 9 0.31
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (15 bp):
AAATAAAATAAAAAA
Found at i:641086 original size:18 final size:17
Alignment explanation
Indices: 641069--641113 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
641059 TAAATAAATA
641069 AAATAAAAAAAAATAAT
1 AAATAAAAAAAAATAAT
*
641086 ATATAAAAAAATAATAAGT
1 AAATAAAAAAA-AATAA-T
641105 -AATAAAAAA
1 AAATAAAAAA
641114 TTTGAAAGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 10 0.42
18 13 0.54
19 1 0.04
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (17 bp):
AAATAAAAAAAAATAAT
Found at i:650749 original size:27 final size:27
Alignment explanation
Indices: 650729--650921 Score: 316
Period size: 27 Copynumber: 7.1 Consensus size: 27
650719 GCCACCACCA
* *
650729 AACAACATGGGAAGAATGCCACCCAAC
1 AACAACATGGGAGGGATGCCACCCAAC
*
650756 AACAACATGGGAAGGATGCCACCCAAC
1 AACAACATGGGAGGGATGCCACCCAAC
650783 AACAACATGGGAGGGATGCCACCCAAC
1 AACAACATGGGAGGGATGCCACCCAAC
650810 AACAACATGGGAGGGATGCCACCCAAC
1 AACAACATGGGAGGGATGCCACCCAAC
650837 AACAACATGGGAGGGATGCCACCCAAC
1 AACAACATGGGAGGGATGCCACCCAAC
* *
650864 AACAACATGGGAAGGATGCCA-CCACC
1 AACAACATGGGAGGGATGCCACCCAAC
*
650890 AAACAACATGGGAGGGATGCCACCAAAC
1 -AACAACATGGGAGGGATGCCACCCAAC
650918 AACA
1 AACA
650922 TGGGGAATAT
Statistics
Matches: 157, Mismatches: 7, Indels: 4
0.93 0.04 0.02
Matches are distributed among these distances:
26 4 0.03
27 150 0.96
28 3 0.02
ACGTcount: A:0.40, C:0.29, G:0.23, T:0.07
Consensus pattern (27 bp):
AACAACATGGGAGGGATGCCACCCAAC
Found at i:653116 original size:50 final size:50
Alignment explanation
Indices: 653045--653141 Score: 185
Period size: 50 Copynumber: 1.9 Consensus size: 50
653035 TGTATGTATG
653045 TACATGCATACATAGTTTGCTTAGACTTTGCCTCCATTTAAACAGTTACA
1 TACATGCATACATAGTTTGCTTAGACTTTGCCTCCATTTAAACAGTTACA
*
653095 TACATGCATACATAGTTTGCTTAGACTTTGCCTCTATTTAAACAGTT
1 TACATGCATACATAGTTTGCTTAGACTTTGCCTCCATTTAAACAGTT
653142 CTCTGGTGTG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.38
Consensus pattern (50 bp):
TACATGCATACATAGTTTGCTTAGACTTTGCCTCCATTTAAACAGTTACA
Found at i:656112 original size:39 final size:39
Alignment explanation
Indices: 656058--656132 Score: 150
Period size: 39 Copynumber: 1.9 Consensus size: 39
656048 ATGAATCGAC
656058 GAATACTCCATCCCTGAGGCTGAATAAGGACCGGTATCT
1 GAATACTCCATCCCTGAGGCTGAATAAGGACCGGTATCT
656097 GAATACTCCATCCCTGAGGCTGAATAAGGACCGGTA
1 GAATACTCCATCCCTGAGGCTGAATAAGGACCGGTA
656133 GATACCGATG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.29, C:0.25, G:0.24, T:0.21
Consensus pattern (39 bp):
GAATACTCCATCCCTGAGGCTGAATAAGGACCGGTATCT
Found at i:663098 original size:301 final size:301
Alignment explanation
Indices: 662556--663158 Score: 1179
Period size: 301 Copynumber: 2.0 Consensus size: 301
662546 GAATACAGAC
662556 ACCAAAGACGGTTGAAGTACATGGCAGAAAGTTCAGGTCGGCAATGAATTGGTACAAGCAAGAGC
1 ACCAAAGACGGTTGAAGTACATGGCAGAAAGTTCAGGTCGGCAATGAATTGGTACAAGCAAGAGC
662621 ACCTTTACAAGTTCAACACCACCGGAAAAAGGCCACTGGTATTATACAAGTAAACTGTTAAGTAC
66 ACCTTTACAAGTTCAACACCACCGGAAAAAGGCCACTGGTATTATACAAGTAAACTGTTAAGTAC
662686 ACCAACACTCAACAAATTGCAGCACAAGATCAAGAAGCAACCGACAAATCACTGGTATACTTAAC
131 ACCAACACTCAACAAATTGCAGCACAAGATCAAGAAGCAACCGACAAATCACTGGTATACTTAAC
662751 AAAATACTTGTTCTCACATCATTAGGATCATCATTGAAACAAGAACCCACTCAGAAAGTCCATGA
196 AAAATACTTGTTCTCACATCATTAGGATCATCATTGAAACAAGAACCCACTCAGAAAGTCCATGA
662816 TATTGGGGCATTCTACAAAATTTTCACATTGAACAAACCAG
261 TATTGGGGCATTCTACAAAATTTTCACATTGAACAAACCAG
*
662857 ACCAAAGACGGTTGAAGTACATGGCAGAAAGTTCAGGTCGGCAATGCATTGGTACAAGCAAGAGC
1 ACCAAAGACGGTTGAAGTACATGGCAGAAAGTTCAGGTCGGCAATGAATTGGTACAAGCAAGAGC
662922 ACCTTTACAAGTTCAACACCACCGGAAAAAGGCCACTGGTATTATACAAGTAAACTGTTAAGTAC
66 ACCTTTACAAGTTCAACACCACCGGAAAAAGGCCACTGGTATTATACAAGTAAACTGTTAAGTAC
*
662987 ACCAACACTCAACAGATTGCAGCACAAGATCAAGAAGCAACCGACAAATCACTGGTATACTTAAC
131 ACCAACACTCAACAAATTGCAGCACAAGATCAAGAAGCAACCGACAAATCACTGGTATACTTAAC
*
663052 GAAATACTTGTTCTCACATCATTAGGATCATCATTGAAACAAGAACCCACTCAGAAAGTCCATGA
196 AAAATACTTGTTCTCACATCATTAGGATCATCATTGAAACAAGAACCCACTCAGAAAGTCCATGA
663117 TATTGGGGCATTCTACAAAATTTTCACATTGAACAAACCAG
261 TATTGGGGCATTCTACAAAATTTTCACATTGAACAAACCAG
663158 A
1 A
663159 GAAACCTTGG
Statistics
Matches: 299, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
301 299 1.00
ACGTcount: A:0.39, C:0.22, G:0.17, T:0.21
Consensus pattern (301 bp):
ACCAAAGACGGTTGAAGTACATGGCAGAAAGTTCAGGTCGGCAATGAATTGGTACAAGCAAGAGC
ACCTTTACAAGTTCAACACCACCGGAAAAAGGCCACTGGTATTATACAAGTAAACTGTTAAGTAC
ACCAACACTCAACAAATTGCAGCACAAGATCAAGAAGCAACCGACAAATCACTGGTATACTTAAC
AAAATACTTGTTCTCACATCATTAGGATCATCATTGAAACAAGAACCCACTCAGAAAGTCCATGA
TATTGGGGCATTCTACAAAATTTTCACATTGAACAAACCAG
Found at i:665839 original size:24 final size:24
Alignment explanation
Indices: 665807--665910 Score: 163
Period size: 24 Copynumber: 4.3 Consensus size: 24
665797 AGCACCCAAC
* * *
665807 CCACCATAGCCGGTTGAACCTGGT
1 CCACCATAGCCAGCTGGACCTGGT
* *
665831 CCACCATAGCCGGTTGGACCTGGT
1 CCACCATAGCCAGCTGGACCTGGT
665855 CCACCATAGCCAGCTGGACCTGGT
1 CCACCATAGCCAGCTGGACCTGGT
665879 CCACCATAGCCAGCTGGACCTGGT
1 CCACCATAGCCAGCTGGACCTGGT
665903 CCACCATA
1 CCACCATA
665911 CGGACCAACA
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 77 1.00
ACGTcount: A:0.21, C:0.37, G:0.24, T:0.18
Consensus pattern (24 bp):
CCACCATAGCCAGCTGGACCTGGT
Found at i:672698 original size:3 final size:3
Alignment explanation
Indices: 672690--672714 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
672680 TTCATGGCCA
672690 TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT T
672715 TTCCCATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:675790 original size:52 final size:52
Alignment explanation
Indices: 675732--675837 Score: 212
Period size: 52 Copynumber: 2.0 Consensus size: 52
675722 AAACGTATTA
675732 AATTTTTAATGATAAAATATTAAAATAAAGTAAAAAGTTAAATGTTAGATAT
1 AATTTTTAATGATAAAATATTAAAATAAAGTAAAAAGTTAAATGTTAGATAT
675784 AATTTTTAATGATAAAATATTAAAATAAAGTAAAAAGTTAAATGTTAGATAT
1 AATTTTTAATGATAAAATATTAAAATAAAGTAAAAAGTTAAATGTTAGATAT
675836 AA
1 AA
675838 AATATTAATC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 54 1.00
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (52 bp):
AATTTTTAATGATAAAATATTAAAATAAAGTAAAAAGTTAAATGTTAGATAT
Found at i:677347 original size:16 final size:16
Alignment explanation
Indices: 677299--677348 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
677289 AAACAAGTCG
*
677299 AATCG-AAATAAACATG
1 AATCGAAAATAAAC-TA
*
677315 AATCGAAAGTAAACTA
1 AATCGAAAATAAACTA
*
677331 AATCGAAAATAACCTA
1 AATCGAAAATAAACTA
677347 AA
1 AA
677349 CTGAAAGCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
16 22 0.76
17 7 0.24
ACGTcount: A:0.58, C:0.14, G:0.10, T:0.18
Consensus pattern (16 bp):
AATCGAAAATAAACTA
Found at i:686000 original size:18 final size:17
Alignment explanation
Indices: 685977--686010 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
685967 GATATTATTA
*
685977 TAGTTTTGATTCTAATTT
1 TAGTTTTAATT-TAATTT
685995 TAGTTTTAATTTAATT
1 TAGTTTTAATTTAATT
686011 ATTAATTGTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.26, C:0.03, G:0.09, T:0.62
Consensus pattern (17 bp):
TAGTTTTAATTTAATTT
Found at i:693817 original size:24 final size:24
Alignment explanation
Indices: 693785--693831 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
693775 ATAATGATCT
693785 AAATATATGATCTTATCATAAATA
1 AAATATATGATCTTATCATAAATA
693809 AAATATATGATCTTATCATAAAT
1 AAATATATGATCTTATCATAAAT
693832 TTATAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.49, C:0.09, G:0.04, T:0.38
Consensus pattern (24 bp):
AAATATATGATCTTATCATAAATA
Found at i:694115 original size:18 final size:18
Alignment explanation
Indices: 694092--694130 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
694082 CTTAAATGTT
694092 TAAATAAAATTTCAAA-AA
1 TAAATAAAATTT-AAATAA
694110 TAAATAAAATTTAAATAA
1 TAAATAAAATTTAAATAA
694128 TAA
1 TAA
694131 GTTAATATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 3 0.15
18 17 0.85
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAATAAAATTTAAATAA
Found at i:701600 original size:35 final size:37
Alignment explanation
Indices: 701529--701601 Score: 89
Period size: 35 Copynumber: 2.0 Consensus size: 37
701519 GTTGAAAAAT
* *
701529 ATTTATATATTTTCTTTAAAAAATTTAAATTCATAAA
1 ATTTATACATTTTCTTTAAAAAATTTAAAATCATAAA
*
701566 ATTTATACATTTT-TTT-ACAAATTTGAAAAT-ATAAA
1 ATTTATACATTTTCTTTAAAAAATTT-AAAATCATAAA
701601 A
1 A
701602 AGGTTTAATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
35 13 0.41
36 7 0.22
37 12 0.38
ACGTcount: A:0.47, C:0.05, G:0.01, T:0.47
Consensus pattern (37 bp):
ATTTATACATTTTCTTTAAAAAATTTAAAATCATAAA
Found at i:704541 original size:208 final size:206
Alignment explanation
Indices: 704185--704587 Score: 698
Period size: 208 Copynumber: 1.9 Consensus size: 206
704175 CCCGTGTTCA
* * *
704185 TAAGAGTACTGGTGTTTGTATTGTCTGTTATGTGTAAACTGTTTATTACCAATCGGTAGGTTAGA
1 TAAGAGTACTGGTATTTGTATTGTCTGTTAGGTGTAAACTGTTTATTACCAATCAGTAGGTTAGA
* *
704250 TTTTTATGATACATTAAGGGAGAATTCTGTGCATTCTGCTTTTAGCTGTATTTCTTTTTTTAATT
66 TTTTTATGATACATTAAGGGAGAATTCTGTGCATTCTGCTTTTAGCTGTACTTCTTTCTTTAATT
* *
704315 ATATGTTAATGTTTTACTTTTTAGGGAGGGATATCACTAATCTATATTTGAGAAACTTGTGTTTA
131 ATATGTTAATGTTTTACTTTTTAGGGAGGGATACCACTAATCTATATTTGAGAAACTCGTGTTTA
704380 AAGGTAATGCG
196 AAGGTAATGCG
704391 TAAGAGTACTGGTATTTGTATTGTCTGTCATAGGTGTAAACTGTTTATTACCAATCAGTAGGTTA
1 TAAGAGTACTGGTATTTGTATTGTCTGT--TAGGTGTAAACTGTTTATTACCAATCAGTAGGTTA
* *
704456 GATTTTTATGATACATTAAGGGAGAATTCTGTGCATTCTGCTTTTAGCTTTGCTTCTTTCTTTAA
64 GATTTTTATGATACATTAAGGGAGAATTCTGTGCATTCTGCTTTTAGCTGTACTTCTTTCTTTAA
*
704521 TTATATGTTAATGTTTTACTTTTTAGGGAGGGATGCCACTAATCTATATTTGAGAAACTCGTGTT
129 TTATATGTTAATGTTTTACTTTTTAGGGAGGGATACCACTAATCTATATTTGAGAAACTCGTGTT
704586 TA
194 TA
704588 TGGAAAGTAC
Statistics
Matches: 185, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
206 27 0.15
208 158 0.85
ACGTcount: A:0.26, C:0.10, G:0.20, T:0.44
Consensus pattern (206 bp):
TAAGAGTACTGGTATTTGTATTGTCTGTTAGGTGTAAACTGTTTATTACCAATCAGTAGGTTAGA
TTTTTATGATACATTAAGGGAGAATTCTGTGCATTCTGCTTTTAGCTGTACTTCTTTCTTTAATT
ATATGTTAATGTTTTACTTTTTAGGGAGGGATACCACTAATCTATATTTGAGAAACTCGTGTTTA
AAGGTAATGCG
Found at i:726927 original size:22 final size:22
Alignment explanation
Indices: 726902--726950 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
726892 TTTTCATTTT
* *
726902 TTTAAAATTTTATAAATTTATC
1 TTTAAAATTTCATAAATTTACC
726924 TTTAAAATTTCATAAATTTACC
1 TTTAAAATTTCATAAATTTACC
726946 TTTAA
1 TTTAA
726951 TATAAAAGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.41, C:0.08, G:0.00, T:0.51
Consensus pattern (22 bp):
TTTAAAATTTCATAAATTTACC
Found at i:730754 original size:25 final size:22
Alignment explanation
Indices: 730700--730751 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
730690 TAAGTCACTA
*
730700 TTTTTATTTAATAAAAATAATT
1 TTTTTATTGAATAAAAATAATT
730722 TTTTTATTGAATAAAAATAATT
1 TTTTTATTGAATAAAAATAATT
730744 TTTTTATT
1 TTTTTATT
730752 ATTTCGGGCC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (22 bp):
TTTTTATTGAATAAAAATAATT
Found at i:733155 original size:21 final size:20
Alignment explanation
Indices: 733129--733170 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
733119 AGAAGGTTGG
*
733129 TTTTTTAAATATATATATTAA
1 TTTTTTAAAAATATAT-TTAA
733150 TTTTTTAAAAATATATTTAA
1 TTTTTTAAAAATATATTTAA
733170 T
1 T
733171 ACATGAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
TTTTTTAAAAATATATTTAA
Found at i:740719 original size:20 final size:20
Alignment explanation
Indices: 740696--740743 Score: 71
Period size: 20 Copynumber: 2.4 Consensus size: 20
740686 AATCATATTA
740696 ATTTTTTTGTAA-TTTTTCAG
1 ATTTTTTTG-AATTTTTTCAG
*
740716 ATTTTTTTGAATTTTTTCTG
1 ATTTTTTTGAATTTTTTCAG
740736 ATTTTTTT
1 ATTTTTTT
740744 ATATTTGTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 2 0.08
20 24 0.92
ACGTcount: A:0.17, C:0.04, G:0.08, T:0.71
Consensus pattern (20 bp):
ATTTTTTTGAATTTTTTCAG
Found at i:740749 original size:20 final size:20
Alignment explanation
Indices: 740696--740749 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
740686 AATCATATTA
* *
740696 ATTTTTTTGTAATTTTTCAG
1 ATTTTTTTATATTTTTTCAG
*
740716 ATTTTTTTGA-ATTTTTTCTG
1 ATTTTTTT-ATATTTTTTCAG
740736 ATTTTTTTATATTT
1 ATTTTTTTATATTT
740750 GTAAAATTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 1 0.03
20 28 0.97
ACGTcount: A:0.19, C:0.04, G:0.07, T:0.70
Consensus pattern (20 bp):
ATTTTTTTATATTTTTTCAG
Found at i:741159 original size:19 final size:17
Alignment explanation
Indices: 741119--741153 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
741109 AAAAGTAAAA
*
741119 TTTATCGGATATATTTT
1 TTTATCAGATATATTTT
741136 TTTATCAGATATATTTT
1 TTTATCAGATATATTTT
741153 T
1 T
741154 GTTTATGTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.26, C:0.06, G:0.09, T:0.60
Consensus pattern (17 bp):
TTTATCAGATATATTTT
Found at i:741248 original size:84 final size:84
Alignment explanation
Indices: 741151--741319 Score: 268
Period size: 84 Copynumber: 2.0 Consensus size: 84
741141 CAGATATATT
*
741151 TTTGTTTATGTCACATGTTTCATTTATGGGACAAAAACT-GTTCGTCTTTTTCGTCTTTGTCATA
1 TTTGTTTATGTCACATGTTTCATTTATCGGACAAAAACTAGTT-GTCTTTTTCGTCTTTGTCATA
*
741215 TCTTTATTAACACAAGAATG
65 TCCTTATTAACACAAGAATG
* * *
741235 TTTGTTTATGTCACATGTTTCATTTATCGGACAAAAATTAGTTGTCTTTTTCTTCTTTGTCTTAT
1 TTTGTTTATGTCACATGTTTCATTTATCGGACAAAAACTAGTTGTCTTTTTCGTCTTTGTCATAT
*
741300 CCTTGTTAACACAAGAATG
66 CCTTATTAACACAAGAATG
741319 T
1 T
741320 GTAAAGAGGG
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
84 75 0.96
85 3 0.04
ACGTcount: A:0.24, C:0.15, G:0.14, T:0.47
Consensus pattern (84 bp):
TTTGTTTATGTCACATGTTTCATTTATCGGACAAAAACTAGTTGTCTTTTTCGTCTTTGTCATAT
CCTTATTAACACAAGAATG
Found at i:741384 original size:3 final size:3
Alignment explanation
Indices: 741378--741432 Score: 65
Period size: 3 Copynumber: 18.3 Consensus size: 3
741368 ATATTTTAAA
* * * *
741378 TAT TAT TAT TAT TAT TAT TAT TTT TAT TAT TAA TAT TAA TAT TAA TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
741426 TAA TAT T
1 TAT TAT T
741433 TCTTTATTAA
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:742549 original size:48 final size:48
Alignment explanation
Indices: 742497--742591 Score: 181
Period size: 48 Copynumber: 2.0 Consensus size: 48
742487 TTCCCCATAA
742497 TTAATATGTTACCATCATTTCTACTAATCTTTTTAGGAAATAAACTAG
1 TTAATATGTTACCATCATTTCTACTAATCTTTTTAGGAAATAAACTAG
*
742545 TTAATATGTTACCATCATTTCTACTATTCTTTTTAGGAAATAAACTA
1 TTAATATGTTACCATCATTTCTACTAATCTTTTTAGGAAATAAACTA
742592 TCATTTCAGC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.35, C:0.15, G:0.07, T:0.43
Consensus pattern (48 bp):
TTAATATGTTACCATCATTTCTACTAATCTTTTTAGGAAATAAACTAG
Found at i:744307 original size:17 final size:17
Alignment explanation
Indices: 744285--744323 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
744275 TAAATTAAAT
*
744285 TAATTAGATATTGTTTA
1 TAATTAGATATTATTTA
744302 TAATTAGATATTATTTA
1 TAATTAGATATTATTTA
744319 -AATTA
1 TAATTA
744324 ATTGTAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 5 0.24
17 16 0.76
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (17 bp):
TAATTAGATATTATTTA
Found at i:745609 original size:60 final size:60
Alignment explanation
Indices: 745545--745659 Score: 151
Period size: 60 Copynumber: 1.9 Consensus size: 60
745535 GTTATAGGGT
** *
745545 ATTATTTTATTAAGTTTATTGACTATTAAAAGTTACAAAATGATCAT-CTAACTATAAAGA
1 ATTATTTTATTAAGTCCATTAACTATTAAAAGTTACAAAATGATCATGC-AACTATAAAGA
* * * *
745605 ATTATTTTGTTGAGTCCCTTAACTATTACAAGTTACAAAATGATCATGCAACTAT
1 ATTATTTTATTAAGTCCATTAACTATTAAAAGTTACAAAATGATCATGCAACTAT
745660 TCATCATGTT
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
60 46 0.98
61 1 0.02
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (60 bp):
ATTATTTTATTAAGTCCATTAACTATTAAAAGTTACAAAATGATCATGCAACTATAAAGA
Found at i:746355 original size:19 final size:19
Alignment explanation
Indices: 746331--746373 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
746321 TCCATATATT
746331 ATAATAATATTTTT-CTAAA
1 ATAATAAT-TTTTTACTAAA
*
746350 ATAATAGTTTTTTCACTAAA
1 ATAATAATTTTTT-ACTAAA
746370 ATAA
1 ATAA
746374 AATGTTATGG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 5 0.24
19 7 0.33
20 9 0.43
ACGTcount: A:0.47, C:0.07, G:0.02, T:0.44
Consensus pattern (19 bp):
ATAATAATTTTTTACTAAA
Found at i:746631 original size:14 final size:13
Alignment explanation
Indices: 746596--746655 Score: 52
Period size: 14 Copynumber: 4.5 Consensus size: 13
746586 ATATTTAATT
*
746596 TAAATTAATTAAA
1 TAAAATAATTAAA
746609 T--AATGAATTAAA
1 TAAAAT-AATTAAA
*
746621 TATAAATAATTATA
1 TA-AAATAATTAAA
746635 TAAAAATAACTTAAA
1 T-AAAATAA-TTAAA
746650 TAAAAT
1 TAAAAT
746656 TATAAATTCA
Statistics
Matches: 38, Mismatches: 3, Indels: 11
0.73 0.06 0.21
Matches are distributed among these distances:
11 2 0.05
12 8 0.21
13 1 0.03
14 18 0.47
15 9 0.24
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (13 bp):
TAAAATAATTAAA
Done.