Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007859.1 Hibiscus syriacus cultivar Beakdansim tig00110221_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3538007
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 3 of 18
Found at i:457261 original size:39 final size:39
Alignment explanation
Indices: 457217--457299 Score: 130
Period size: 39 Copynumber: 2.1 Consensus size: 39
457207 CTCATGATTT
* *
457217 TATCAAAACCATGATAAACAATATCATACATAATAGTCA
1 TATCAAAACAATGAAAAACAATATCATACATAATAGTCA
**
457256 TATCAAATTAATGAAAAACAATATCATACATAATAGTCA
1 TATCAAAACAATGAAAAACAATATCATACATAATAGTCA
457295 TATCA
1 TATCA
457300 TATTCTTTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.52, C:0.16, G:0.05, T:0.28
Consensus pattern (39 bp):
TATCAAAACAATGAAAAACAATATCATACATAATAGTCA
Found at i:457349 original size:13 final size:13
Alignment explanation
Indices: 457331--457388 Score: 73
Period size: 13 Copynumber: 4.5 Consensus size: 13
457321 AATACAAAAC
*
457331 TTTCATATCTCAT
1 TTTCATATTTCAT
*
457344 TTTCATCTTTCAT
1 TTTCATATTTCAT
* *
457357 TTTCATA-GTCAC
1 TTTCATATTTCAT
457369 TTTCATATTTCAT
1 TTTCATATTTCAT
457382 TTTCATA
1 TTTCATA
457389 ATTTGTACTT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
12 10 0.27
13 27 0.73
ACGTcount: A:0.22, C:0.21, G:0.02, T:0.55
Consensus pattern (13 bp):
TTTCATATTTCAT
Found at i:457360 original size:6 final size:6
Alignment explanation
Indices: 457340--457387 Score: 51
Period size: 6 Copynumber: 7.7 Consensus size: 6
457330 CTTTCATATC
** *
457340 TCATTT TCATCTT TCATTT TCATAG TCACTT TCATATT TCATTT TCAT
1 TCATTT TCAT-TT TCATTT TCATTT TCATTT TCAT-TT TCATTT TCAT
457388 AATTTGTACT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
6 22 0.65
7 12 0.35
ACGTcount: A:0.21, C:0.21, G:0.02, T:0.56
Consensus pattern (6 bp):
TCATTT
Found at i:457490 original size:19 final size:19
Alignment explanation
Indices: 457419--457496 Score: 61
Period size: 19 Copynumber: 4.2 Consensus size: 19
457409 GAACTCATTC
* *
457419 TCAGATTCAGAACTT-GTT
1 TCAGATTCATAACTTAATT
* *
457437 TCTAGACTCAAAACTT-ATT
1 TC-AGATTCATAACTTAATT
457456 TCAGATTCATAACTTAATT
1 TCAGATTCATAACTTAATT
* * * *
457475 TCATATTTATAGCTTATTT
1 TCAGATTCATAACTTAATT
457494 TCA
1 TCA
457497 AGTTCATAGC
Statistics
Matches: 49, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
18 13 0.27
19 36 0.73
ACGTcount: A:0.32, C:0.17, G:0.08, T:0.44
Consensus pattern (19 bp):
TCAGATTCATAACTTAATT
Found at i:457505 original size:19 final size:19
Alignment explanation
Indices: 457453--457506 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
457443 CTCAAAACTT
* *
457453 ATTTCAGATTCATAACTTA
1 ATTTCATATTCATAGCTTA
*
457472 ATTTCATATTTATAGCTTA
1 ATTTCATATTCATAGCTTA
*
457491 TTTTCA-AGTTCATAGC
1 ATTTCATA-TTCATAGC
457507 CCAATGCATA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
18 1 0.03
19 28 0.97
ACGTcount: A:0.31, C:0.15, G:0.07, T:0.46
Consensus pattern (19 bp):
ATTTCATATTCATAGCTTA
Found at i:458146 original size:25 final size:25
Alignment explanation
Indices: 458111--458173 Score: 65
Period size: 25 Copynumber: 2.5 Consensus size: 25
458101 CATTTTATGC
* *
458111 ATTTTCTTTTTTACTTTAGTATATAT
1 ATTTTATTTTTTACATTA-TATATAT
*
458137 -TTTTATTTTTTTAGATTATATATAT
1 ATTTTA-TTTTTTACATTATATATAT
*
458162 ATATTATTTTTT
1 ATTTTATTTTTT
458174 TATTATCAGT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
25 17 0.55
26 14 0.45
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.68
Consensus pattern (25 bp):
ATTTTATTTTTTACATTATATATAT
Found at i:458223 original size:28 final size:28
Alignment explanation
Indices: 458183--458283 Score: 93
Period size: 31 Copynumber: 3.6 Consensus size: 28
458173 TTATTATCAG
* *
458183 TTTTATTAATTTATATATATATTTACTA
1 TTTTATTTATTTATATATATATTTATTA
* *
458211 TTTTATTTTTTTATTTATTATATATATATTA
1 TTTTATTTATTTA--TA-TATATATTTATTA
458242 TTTTACTTT-TTTAT-TAT-TATTTATTTA
1 TTTTA-TTTATTTATATATATATTTA-TTA
458269 TTTT-TTTATTTATAT
1 TTTTATTTATTTATAT
458284 TTTTTTCTTC
Statistics
Matches: 61, Mismatches: 5, Indels: 15
0.75 0.06 0.19
Matches are distributed among these distances:
25 3 0.05
26 10 0.16
27 11 0.18
28 11 0.18
29 1 0.02
30 2 0.03
31 20 0.33
32 3 0.05
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (28 bp):
TTTTATTTATTTATATATATATTTATTA
Found at i:458229 original size:4 final size:4
Alignment explanation
Indices: 458184--458281 Score: 60
Period size: 4 Copynumber: 24.2 Consensus size: 4
458174 TATTATCAGT
* * * * *
458184 TTTA TTAA TTTA TATA TATA TTTA -CTA TTTTA TTTT TTTA TTTA TTATA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TTTA TT-TA
* *
458233 TATA TATTA TTTTA CTTT- TTTA -TTA -TTA TTTA TTTA TTTT TTTA TTTA
1 TTTA T-TTA -TTTA -TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
458281 T
1 T
458282 ATTTTTTTCT
Statistics
Matches: 74, Mismatches: 13, Indels: 14
0.73 0.13 0.14
Matches are distributed among these distances:
3 11 0.15
4 49 0.66
5 13 0.18
6 1 0.01
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (4 bp):
TTTA
Found at i:458235 original size:37 final size:38
Alignment explanation
Indices: 458136--458270 Score: 138
Period size: 39 Copynumber: 3.6 Consensus size: 38
458126 TTAGTATATA
* *
458136 TTTTTATT-TTTTTA--GATTATATATATATA-TTATT
1 TTTTTATTATTTTTATTTATTATATATATATATTTACT
*
458170 TTTTTATTATCAGTTTTATTAATT-TATATATATATTTACT
1 TTTTTATTAT---TTTTATTTATTATATATATATATTTACT
*
458210 ATTTTATT-TTTTTATTTATTATATATATATTATTTTACT
1 TTTTTATTATTTTTATTTATTATATATATA-TA-TTTACT
458249 TTTTTATTATTATTTATTTATT
1 TTTTTATTATT-TTTATTTATT
458271 TTTTTATTTA
Statistics
Matches: 84, Mismatches: 5, Indels: 17
0.79 0.05 0.16
Matches are distributed among these distances:
34 8 0.10
35 1 0.01
36 10 0.12
37 8 0.10
38 7 0.08
39 24 0.29
40 16 0.19
41 10 0.12
ACGTcount: A:0.28, C:0.02, G:0.01, T:0.68
Consensus pattern (38 bp):
TTTTTATTATTTTTATTTATTATATATATATATTTACT
Found at i:458297 original size:23 final size:22
Alignment explanation
Indices: 458209--458325 Score: 96
Period size: 23 Copynumber: 5.2 Consensus size: 22
458199 ATATATTTAC
*
458209 TATTT-TATTTTTTTATTTATTA
1 TATTTATATTTTTTTATTT-TTT
* * *
458231 TATATATATTATTTTACTTTTT
1 TATTTATATTTTTTTATTTTTT
*
458253 TA-TTATTATTTATTTATTTTTT
1 TATTTA-TATTTTTTTATTTTTT
*
458275 TATTTATATTTTTTTCTTCTTTT
1 TATTTATATTTTTTTATT-TTTT
* *
458298 TCTTTATGTTTTTTT-TTTATATT
1 TATTTATATTTTTTTATTT-T-TT
458321 TATTT
1 TATTT
458326 TACTTACTAT
Statistics
Matches: 76, Mismatches: 13, Indels: 11
0.76 0.13 0.11
Matches are distributed among these distances:
21 3 0.04
22 36 0.47
23 37 0.49
ACGTcount: A:0.20, C:0.03, G:0.01, T:0.76
Consensus pattern (22 bp):
TATTTATATTTTTTTATTTTTT
Found at i:458310 original size:36 final size:36
Alignment explanation
Indices: 458166--458337 Score: 109
Period size: 36 Copynumber: 4.5 Consensus size: 36
458156 ATATATATAT
* *
458166 TATTTTTTTATTATCAGTTTTATTAATTTATATATATATTTA
1 TATTTTTTTATTATTA--TTTATTTATTT-T-T-T-TATTTA
* *
458208 CTATTTTATTT-TT-TTATTTATTATATATATATTATTT-
1 -TATTTT-TTTATTATTATTTATT-TAT-TTTTTTATTTA
*
458245 TACTTTTTTATTATTATTTATTTATTTTTTTATTTA
1 TATTTTTTTATTATTATTTATTTATTTTTTTATTTA
* * * *
458281 TATTTTTTTCTTCTT-TTTCTTTATGTTTTTTTTTTA
1 TATTTTTTTATTATTATTTATTTAT-TTTTTTATTTA
*
458317 TATTTATTTTACTTACTATTT
1 TATTT-TTTTA-TTATTATTT
458338 TATCTTTACT
Statistics
Matches: 104, Mismatches: 15, Indels: 24
0.73 0.10 0.17
Matches are distributed among these distances:
35 19 0.18
36 37 0.36
37 13 0.12
38 8 0.08
39 4 0.04
40 6 0.06
41 3 0.03
42 3 0.03
43 8 0.08
44 3 0.03
ACGTcount: A:0.23, C:0.05, G:0.01, T:0.72
Consensus pattern (36 bp):
TATTTTTTTATTATTATTTATTTATTTTTTTATTTA
Found at i:461521 original size:20 final size:20
Alignment explanation
Indices: 461485--461522 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
461475 CCCAAAATAG
*
461485 CCAAATTTCACATTCTAACA
1 CCAAATTTCACACTCTAACA
461505 CCAAA-TTCATCACTCTAA
1 CCAAATTTCA-CACTCTAA
461523 TATTAATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.39, C:0.32, G:0.00, T:0.29
Consensus pattern (20 bp):
CCAAATTTCACACTCTAACA
Found at i:462709 original size:30 final size:30
Alignment explanation
Indices: 462673--462739 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
462663 AAAAACACCT
* *
462673 AACTTTTAAAAATTATAATTTTGGTCTCTG
1 AACTTTTAAAAATGATAATTTTGGTCTCTA
** *
462703 AACTTTTAAAAATGATCTTTTTTGTCTCTA
1 AACTTTTAAAAATGATAATTTTGGTCTCTA
462733 AACTTTT
1 AACTTTT
462740 CCAAACTTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.31, C:0.12, G:0.07, T:0.49
Consensus pattern (30 bp):
AACTTTTAAAAATGATAATTTTGGTCTCTA
Found at i:474101 original size:25 final size:25
Alignment explanation
Indices: 474056--474103 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
474046 TTAATGTTTA
*
474056 TTTTATTTTAATTAATTAAATAATT
1 TTTTATTTTAATGAATTAAATAATT
*
474081 TTTTA-TTTAATGATTTGAAATAA
1 TTTTATTTTAATGAATT-AAATAA
474104 CTTTAAAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (25 bp):
TTTTATTTTAATGAATTAAATAATT
Found at i:477611 original size:6 final size:6
Alignment explanation
Indices: 477600--477636 Score: 58
Period size: 6 Copynumber: 6.2 Consensus size: 6
477590 GCTTGTAAAT
477600 AAATAA AAAT-A AAATAA ACAATAA AAATAA AAATAA A
1 AAATAA AAATAA AAATAA A-AATAA AAATAA AAATAA A
477637 TGATATTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 5 0.17
6 18 0.62
7 6 0.21
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:477624 original size:18 final size:19
Alignment explanation
Indices: 477601--477636 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
477591 CTTGTAAATA
477601 AATAAAAAT-AAAATAAAC
1 AATAAAAATAAAAATAAAC
477619 AATAAAAATAAAAATAAA
1 AATAAAAATAAAAATAAA
477637 TGATATTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.17
Consensus pattern (19 bp):
AATAAAAATAAAAATAAAC
Found at i:477882 original size:80 final size:80
Alignment explanation
Indices: 477718--478155 Score: 485
Period size: 80 Copynumber: 5.5 Consensus size: 80
477708 TGTCTCAACA
* *** * * * *
477718 ATCACCTCTCTCATATTTAAAAGTGTACCTTGTATGATACATCGCCTT-CTTATAATTGGGTGTG
1 ATCACCACTCTCATATTTAGGTGTGTACCCTGTACGATACATCACCTTGCTTGTAATTGGGTGTG
477782 TATCTTGTACAATAC
66 TATCTTGTACAATAC
* * *
477797 CTCACCACACTCATATTTAGGTGTGTACCCTGTACAATACATCACCTTGCTTGTAATTGGGTGTG
1 ATCACCACTCTCATATTTAGGTGTGTACCCTGTACGATACATCACCTTGCTTGTAATTGGGTGTG
477862 TATCTTGTACAATAC
66 TATCTTGTACAATAC
* ** * * * **
477877 ATCACCACTCTCAT-TCTTAGGTATGTACCCCATATGATACATTACCTTACTTGTAATTGGGCAT
1 ATCACCACTCTCATAT-TTAGGTGTGTACCCTGTACGATACATCACCTTGCTTGTAATTGGGTGT
**
477941 GTATCTCATACAATAC
65 GTATCTTGTACAATAC
* * * * *
477957 ATCACCACTCTCAAATTTA-G-GTGTACCCCGCACGATACACCACCTTGCTTGTAATT-AGTGTG
1 ATCACCACTCTCATATTTAGGTGTGTACCCTGTACGATACATCACCTTGCTTGTAATTGGGTGTG
* *
478019 TATCCTCTACAATAC
66 TATCTTGTACAATAC
* * * *
478034 ATCACCACTCTTATATTTAGGTGTGTAGCCC-ATACAATACATCACATTGCTTGTAATTGGGTGT
1 ATCACCACTCTCATATTTAGGTGTGTA-CCCTGTACGATACATCACCTTGCTTGTAATTGGGTGT
*
478098 GTATCCTGTACAATAC
65 GTATCTTGTACAATAC
* *
478114 ATCACCACTCTCATATTTACGTGAGTA-CCTCGTACGATACAT
1 ATCACCACTCTCATATTTAGGTGTGTACCCT-GTACGATACAT
478156 AATATATGTA
Statistics
Matches: 298, Mismatches: 52, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
77 32 0.11
78 32 0.11
79 67 0.22
80 166 0.56
81 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.34
Consensus pattern (80 bp):
ATCACCACTCTCATATTTAGGTGTGTACCCTGTACGATACATCACCTTGCTTGTAATTGGGTGTG
TATCTTGTACAATAC
Found at i:478059 original size:40 final size:41
Alignment explanation
Indices: 477765--478155 Score: 188
Period size: 40 Copynumber: 9.9 Consensus size: 41
477755 TACATCGCCT
* ** *
477765 TCTTATAATTGGGTGTGTAT-CTTGTACAATACCTCACCAC
1 TCTTATAATTAGGTGTGTATCCTCATACAATACATCACCAC
* * * * * *
477805 ACTCATATTTAGGTGTGTACCCT-GTACAATACATCACC-T
1 TCTTATAATTAGGTGTGTATCCTCATACAATACATCACCAC
* * **
477844 TGCTTGTAATTGGGTGTGTAT-CTTGTACAATACATCACCAC
1 T-CTTATAATTAGGTGTGTATCCTCATACAATACATCACCAC
* ** * * ** * *
477885 TCTCATTCTTAGGTATGTA-CCCCATATGATACATTACC-T
1 TCTTATAATTAGGTGTGTATCCTCATACAATACATCACCAC
* * **
477924 TACTTGTAATTGGGCATGTAT-CTCATACAATACATCACCAC
1 T-CTTATAATTAGGTGTGTATCCTCATACAATACATCACCAC
* * ** * * *
477965 TCTCA-AATTTA-G-GTGTA-CCCCGCACGATACACCACC-T
1 TCTTATAA-TTAGGTGTGTATCCTCATACAATACATCACCAC
*
478002 TGCTTGTAATTA-GTGTGTATCCTC-TACAATACATCACCAC
1 T-CTTATAATTAGGTGTGTATCCTCATACAATACATCACCAC
* * *
478042 TCTTATATTTAGGTGTGTAGCC-CATACAATACATCA-CAT
1 TCTTATAATTAGGTGTGTATCCTCATACAATACATCACCAC
* * *
478081 TGCTTGTAATTGGGTGTGTATCCT-GTACAATACATCACCAC
1 T-CTTATAATTAGGTGTGTATCCTCATACAATACATCACCAC
* * * * * *
478122 TCTCATATTTACGTGAGTA-CCTCGTACGATACAT
1 TCTTATAATTAGGTGTGTATCCTCATACAATACAT
478156 AATATATGTA
Statistics
Matches: 258, Mismatches: 72, Indels: 42
0.69 0.19 0.11
Matches are distributed among these distances:
37 1 0.00
38 23 0.09
39 39 0.15
40 188 0.73
41 7 0.03
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.34
Consensus pattern (41 bp):
TCTTATAATTAGGTGTGTATCCTCATACAATACATCACCAC
Found at i:478374 original size:20 final size:19
Alignment explanation
Indices: 478319--478374 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
478309 ACCAATTCAA
*
478319 GTGGTATCGATACCAAGAG
1 GTGGTATCGATACCATGAG
*
478338 GGGAGTATCGATACCATGAG
1 GTG-GTATCGATACCATGAG
478358 GATGGTATCGATACCAT
1 G-TGGTATCGATACCAT
478375 TTGATCACAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 2 0.06
20 29 0.91
21 1 0.03
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.23
Consensus pattern (19 bp):
GTGGTATCGATACCATGAG
Found at i:479154 original size:68 final size:67
Alignment explanation
Indices: 479036--479562 Score: 599
Period size: 68 Copynumber: 7.7 Consensus size: 67
479026 AAGATTAATT
* * * *
479036 GGCCTAACTGTGCATTTGACAGAAATGTGTCATTTATGTCAGTTATATGAAAGGCTAAGTTCCTT
1 GGCC-AACTGTGCATTTGAAAGAAATGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCTT
479101 TGA
65 TGA
* * * * *
479104 GGCCAACCTGTGCAATTGAAAGAAAGGTATCATTTATGCCAGTTAGATGAAAGACTAAGTTCCTT
1 GGCCAA-CTGTGCATTTGAAAGAAATGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCTT
479169 TGA
65 TGA
* ** * *
479172 GGCCTAACTGTGCATTTGACAA-AAAAGTGTCATTTATGATAGTTAGATGAAATGCTAATTGCCT
1 GGCC-AACTGTGCATTTGA-AAGAAATGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
479236 TTGA
64 TTGA
* * * * *
479240 GGCTTAACTTTGCATTTGACAGAAATGTGTCATTTATGCCAGTTAGATGATAGGCTAAGTACCTT
1 GGC-CAACTGTGCATTTGAAAGAAATGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCTT
479305 TGA
65 TGA
** * *
479308 GGTGTAATTGTGCATTTGACAGAAATGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCTT
1 GG-CCAACTGTGCATTTGAAAGAAATGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCTT
*
479373 CGA
65 TGA
* *
479376 GGCCTAACTGTGCATTTGATAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCTT
1 GGCC-AACTGTGCATTTGAAAGAAATGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCTT
479441 TGA
65 TGA
* * * * * *
479444 GGCCTAACTGTGCATTTCAAA-AACATATGTCATTTATACCAATTAGATGAAAGGATAAGTGCAT
1 GGCC-AACTGTGCATTTGAAAGAA-ATGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
479508 TTGA
64 TTGA
* ** * * * *
479512 GGCATAACTGTGCATTTGGTATAAAGGTGTTAATTATGCCAGTTAGATGAA
1 GGC-CAACTGTGCATTTGAAAGAAATGTGTCATTTATGCCAGTTAGATGAA
479563 CGGTCAAATA
Statistics
Matches: 393, Mismatches: 56, Indels: 20
0.84 0.12 0.04
Matches are distributed among these distances:
67 5 0.01
68 382 0.97
69 6 0.02
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (67 bp):
GGCCAACTGTGCATTTGAAAGAAATGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCTTT
GA
Found at i:479280 original size:136 final size:135
Alignment explanation
Indices: 479036--479562 Score: 664
Period size: 136 Copynumber: 3.9 Consensus size: 135
479026 AAGATTAATT
* * * * *
479036 GGCCTAACTGTGCATTTGACAGAAATGTGTCATTTATGTCAGTTATATGAAAGGCTAAGTTCCTT
1 GGCCTAACTGTGCATTTGACAAAAAAGTGTCATTTATGACAGTTAGATGAAAGGCTAAGTGCCTT
* * * * * *
479101 TGAGGCCAACCTGTGCAATTGAAAGAAAGGTATCATTTATGCCAGTTAGATGAAAGACTAAGTTC
66 TGAGGCTAA-CTGTGCATTTGATAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTAC
479166 CTTTGA
130 CTTTGA
* * *
479172 GGCCTAACTGTGCATTTGACAAAAAAGTGTCATTTATGATAGTTAGATGAAATGCTAATTGCCTT
1 GGCCTAACTGTGCATTTGACAAAAAAGTGTCATTTATGACAGTTAGATGAAAGGCTAAGTGCCTT
* * * *
479237 TGAGGCTTAACTTTGCATTTGACAGAAATGTGTCATTTATGCCAGTTAGATGATAGGCTAAGTAC
66 TGAGGC-TAACTGTGCATTTGATAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTAC
479302 CTTTGA
130 CTTTGA
** * * * *
479308 GGTGTAATTGTGCATTTGACAGAAATGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCTT
1 GGCCTAACTGTGCATTTGACAAAAAAGTGTCATTTATGACAGTTAGATGAAAGGCTAAGTGCCTT
* *
479373 CGAGGCCTAACTGTGCATTTGATAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGC
66 TGAGG-CTAACTGTGCATTTGATAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTAC
479438 CTTTGA
130 CTTTGA
* * *
479444 GGCCTAACTGTGCATTT--CAAAAACATATGTCATTTAT-ACCAATTAGATGAAAGGATAAGTGC
1 GGCCTAACTGTGCATTTGACAAAAA-A-GTGTCATTTATGA-CAGTTAGATGAAAGGCTAAGTGC
* * * * *
479506 ATTTGAGGCATAACTGTGCATTTGGTATAAAGGTGTTAATTATGCCAGTTAGATGAA
63 CTTTGAGGC-TAACTGTGCATTTGATAGAAAGGTGTCATTTATGCCAGTTAGATGAA
479563 CGGTCAAATA
Statistics
Matches: 338, Mismatches: 47, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
134 5 0.01
135 1 0.00
136 329 0.97
137 3 0.01
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (135 bp):
GGCCTAACTGTGCATTTGACAAAAAAGTGTCATTTATGACAGTTAGATGAAAGGCTAAGTGCCTT
TGAGGCTAACTGTGCATTTGATAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTACC
TTTGA
Found at i:479408 original size:204 final size:203
Alignment explanation
Indices: 479036--479562 Score: 678
Period size: 204 Copynumber: 2.6 Consensus size: 203
479026 AAGATTAATT
* * *
479036 GGCCTAACTGTGCATTTGACAGAAATGTGTCATTTATGTCAGTTATATGAAAGGCTAAGTTCCTT
1 GGCCTAACTGTGCATTTGACAGAAATGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTACCTT
** * * *
479101 TGAGGCCAACCTGTGCAATTGAAAGAAAGGTATCATTTATGCCAGTTAGATGAAAGACTAAGTTC
66 TGAGGATAA-CTGTGCATTTGAAAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGACTAAGTGC
* * * *
479166 CTTTGAGGCCTAACTGTGCATTTGACAAAAAAGTGTCATTTATGATAGTTAGATGAAATGCTAAT
130 CTTCGAGGCCTAACTGTGCATTTGACAAAAAAGTGTCATTTATGACAGTTAGATGAAAGGCTAAG
479231 TGCCTTTGA
195 TGCCTTTGA
* * *
479240 GGCTTAACTTTGCATTTGACAGAAATGTGTCATTTATGCCAGTTAGATGATAGGCTAAGTACCTT
1 GGCCTAACTGTGCATTTGACAGAAATGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTACCTT
* * * * *
479305 TGAGGTGTAATTGTGCATTTGACAGAAATGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGC
66 TGAGG-ATAACTGTGCATTTGAAAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGACTAAGTGC
* * * *
479370 CTTCGAGGCCTAACTGTGCATTTGATAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAG
130 CTTCGAGGCCTAACTGTGCATTTGACAAAAAAGTGTCATTTATGACAGTTAGATGAAAGGCTAAG
479435 TGCCTTTGA
195 TGCCTTTGA
* * * * * * * *
479444 GGCCTAACTGTGCATTTCA-AAAACATATGTCATTTATACCAATTAGATGAAAGGATAAGTGCAT
1 GGCCTAACTGTGCATTTGACAGAA-ATGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTACCT
** * * *
479508 TTGAGGCATAACTGTGCATTTGGTATAAAGGTGTTAATTATGCCAGTTAGATGAA
65 TTGAGG-ATAACTGTGCATTTGAAAGAAAGGTGTCATTTATGCCAGTTAGATGAA
479563 CGGTCAAATA
Statistics
Matches: 278, Mismatches: 43, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
203 3 0.01
204 273 0.98
205 2 0.01
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (203 bp):
GGCCTAACTGTGCATTTGACAGAAATGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTACCTT
TGAGGATAACTGTGCATTTGAAAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGACTAAGTGCC
TTCGAGGCCTAACTGTGCATTTGACAAAAAAGTGTCATTTATGACAGTTAGATGAAAGGCTAAGT
GCCTTTGA
Found at i:479653 original size:81 final size:81
Alignment explanation
Indices: 479527--479749 Score: 279
Period size: 81 Copynumber: 2.8 Consensus size: 81
479517 AACTGTGCAT
* * *
479527 TTGGTATAAAGGTGTTAATTATGCCAGTTAGATGAACGGTCAAATATC-GTTGAGTAAAAGAAAA
1 TTGGTATAAAGGTGTCAATTATGCCAGTTAGATAAACGGTCAAATA-CAATTGAGTAAAAGAAAA
479591 ATGGCATAACCGAGTAA
65 ATGGCATAACCGAGTAA
* * * * *
479608 TTGGTAGAAAAGTGTCAATTATGCCAGTTAGATAAATGGTTAAATACAATTGAGTAAAAGAATAA
1 TTGGTATAAAGGTGTCAATTATGCCAGTTAGATAAACGGTCAAATACAATTGAGTAAAAGAAAAA
* * *
479673 TGGCTTAACTGTGTAA
66 TGGCATAACCGAGTAA
* * * *
479689 TTGGCATAAAGGTGTCAATTATGCCAGTTAGA-AGAACGGTTAAACACTATTGAGTAAAAGA
1 TTGGTATAAAGGTGTCAATTATGCCAGTTAGATA-AACGGTCAAATACAATTGAGTAAAAGA
479750 TGAAAGGTTA
Statistics
Matches: 123, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
80 2 0.02
81 121 0.98
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.28
Consensus pattern (81 bp):
TTGGTATAAAGGTGTCAATTATGCCAGTTAGATAAACGGTCAAATACAATTGAGTAAAAGAAAAA
TGGCATAACCGAGTAA
Found at i:479759 original size:29 final size:29
Alignment explanation
Indices: 479726--479837 Score: 172
Period size: 29 Copynumber: 3.9 Consensus size: 29
479716 TTAGAAGAAC
*
479726 GGTTAAACACTATTGAGTAAAAGATGAAA
1 GGTTAAACACTGTTGAGTAAAAGATGAAA
*
479755 GGTTAAACACTCTTGAGTAAAAGATGAAA
1 GGTTAAACACTGTTGAGTAAAAGATGAAA
479784 GGTTAAACACTGTTGAGTAAAAGATGAACA
1 GGTTAAACACTGTTGAGTAAAAGATGAA-A
* *
479814 -GTTAAACATTGTTAAGTAAAAGAT
1 GGTTAAACACTGTTGAGTAAAAGAT
479838 TGTCAAGGTT
Statistics
Matches: 78, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
29 77 0.99
30 1 0.01
ACGTcount: A:0.46, C:0.08, G:0.21, T:0.26
Consensus pattern (29 bp):
GGTTAAACACTGTTGAGTAAAAGATGAAA
Found at i:480658 original size:18 final size:18
Alignment explanation
Indices: 480635--480669 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
480625 TAACTTGTAA
*
480635 GAAGTTATTAATCGAGCC
1 GAAGTTATTAACCGAGCC
480653 GAAGTTATTAACCGAGC
1 GAAGTTATTAACCGAGC
480670 TAAAACTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (18 bp):
GAAGTTATTAACCGAGCC
Found at i:482412 original size:21 final size:21
Alignment explanation
Indices: 482386--482438 Score: 106
Period size: 21 Copynumber: 2.5 Consensus size: 21
482376 ATATAGAGTA
482386 GTATCGATACCGATTCAAGTG
1 GTATCGATACCGATTCAAGTG
482407 GTATCGATACCGATTCAAGTG
1 GTATCGATACCGATTCAAGTG
482428 GTATCGATACC
1 GTATCGATACC
482439 AAGATGAGAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (21 bp):
GTATCGATACCGATTCAAGTG
Found at i:482453 original size:20 final size:20
Alignment explanation
Indices: 482426--482479 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
482416 CCGATTCAAG
*
482426 TGGTATCGATACCAAGATGA
1 TGGTATCGATACCAAGAGGA
*
482446 -GAGTATCGATACCATGAGGA
1 TG-GTATCGATACCAAGAGGA
482466 TGGTATCGATACCA
1 TGGTATCGATACCA
482480 CTTGATCACA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 1 0.03
20 28 0.93
21 1 0.03
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (20 bp):
TGGTATCGATACCAAGAGGA
Found at i:484208 original size:68 final size:68
Alignment explanation
Indices: 483120--484190 Score: 1541
Period size: 68 Copynumber: 15.8 Consensus size: 68
483110 AATGATTAAT
* * * * *
483120 AGGCCTAAATGTGCATTTGACAGAAATGTGTCATTTTTTCCAATTAGATGAAAGGCTAAGTGCCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
483185 TTG
66 TTG
* * * *
483188 AGGCCTAACTGTGCATTTGAGAGAAAGCTATCATTTATACCAGTTAGATGAAAGGCTAAGTGCCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
483253 TTG
66 TTG
* * * * *
483256 AGGCCTAAATGTGCATTTGACAGAAAGGTGTCATTTTTACCAATTAGATGAAAGGCTAAGTTCCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
483321 TTG
66 TTG
* * *
483324 AGGCCTAACTGTGCATTTGACAGAAATGTGTCATTTATGCCAATTAGAAGAAAGGCTAAGTGCCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
483389 TTG
66 TTG
* * * * *
483392 AGGCCTAATTGTGCATTTGAAAGAAAGGTGTCAATTATGCCAGTTACATGAAAGGCTAAGTGTCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
483457 TTG
66 TTG
* * *
483460 ATGCCTAACTGTGCATTTGACATAAATGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
483525 TTG
66 TTG
* * * * * *
483528 ATGCCTAATTGTGCATTTGACAGAAAGTTGTCATTTATGACAGTTAGATGAAAGGGTAAGTGCCA
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
483593 TTG
66 TTG
* * * * *
483596 AGGCCTAAATGTGCATTTGAAAAAAATGTTTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
483661 TTG
66 TTG
483664 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
483729 TTG
66 TTG
* * *
483732 AGGCCTAAATGTGCATTTGACAGAAAGGTGTCATTTATACCAATTAGATGAAAGGCTAAGTGCCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
483797 TTG
66 TTG
* * * *
483800 AGGCCTAATTGTGCATTTGACAGAAATGTGTCATTTATGCCAATTAGATGAAAGGCTAAGTGCAT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
483865 TTG
66 TTG
* * * *
483868 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCTAGTTAAATGAAA-GCTAAGTGTCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
*
483932 TTT
66 TTG
* * * * * *
483935 ATGCCTAACTGTGCTTTTGACAGAAATGTATCATTTATTCTAGTTAGATGAAAGGCTAAGTGCCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
484000 TTG
66 TTG
* * * *
484003 ATGCCTAACTGTGCATTTGACAGAAAGTTGTCATTTATGCCAGTTAGATGAAAGGCTATGTGCCA
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
484068 TTG
66 TTG
* * * * **
484071 AGGCCTAAATGTGCATTTGACATAAATGTTTCATTTCCGCCAGTTAGATGAAAGGCTAAGTGCCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
484136 TTG
66 TTG
* *
484139 AGGCCTAACTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAA
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAA
484191 CAGTTATATA
Statistics
Matches: 892, Mismatches: 110, Indels: 2
0.89 0.11 0.00
Matches are distributed among these distances:
67 57 0.06
68 835 0.94
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (68 bp):
AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
TTG
Found at i:484288 original size:81 final size:81
Alignment explanation
Indices: 484140--484296 Score: 208
Period size: 81 Copynumber: 1.9 Consensus size: 81
484130 GTGCCTTTGA
* * * * *
484140 GGCCTAACTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACAGTTATATACCGT
1 GGCCTAACTGAGCAATTGGCAGAAAGGTGTCAATTATGCCAGTTAGAAGAACAGTTAAACACCGT
484205 TGAGTAAAAGAATAAT
66 TGAGTAAAAGAATAAT
* * * * *
484221 GGCCTAATTGAGCAATTGGTAGAAATGTGTCAATTATTCCAGTTAGAAGAAC-GATTAAACACGG
1 GGCCTAACTGAGCAATTGGCAGAAAGGTGTCAATTATGCCAGTTAGAAGAACAG-TTAAACACCG
484285 TTGAGTAAAAGA
65 TTGAGTAAAAGA
484297 TGAAAGGTTA
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
80 1 0.02
81 64 0.98
ACGTcount: A:0.36, C:0.13, G:0.24, T:0.27
Consensus pattern (81 bp):
GGCCTAACTGAGCAATTGGCAGAAAGGTGTCAATTATGCCAGTTAGAAGAACAGTTAAACACCGT
TGAGTAAAAGAATAAT
Found at i:484308 original size:29 final size:29
Alignment explanation
Indices: 484275--484383 Score: 137
Period size: 29 Copynumber: 3.7 Consensus size: 29
484265 AGAAGAACGA
484275 TTAAACACGGTTGAGTAAAAGATGAAAGG
1 TTAAACACGGTTGAGTAAAAGATGAAAGG
*
484304 TTAAACACTGTTGAGTAAAAGATGAAAGG
1 TTAAACACGGTTGAGTAAAAGATGAAAGG
* * * *
484333 TTAAACATTGTTATTGAGTAAAAGATTAACGG
1 TTAAACA-CG--GTTGAGTAAAAGATGAAAGG
*
484365 TTAAACACTGTTGAGTAAA
1 TTAAACACGGTTGAGTAAA
484384 GGAATAATGG
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
29 44 0.65
32 24 0.35
ACGTcount: A:0.43, C:0.07, G:0.22, T:0.28
Consensus pattern (29 bp):
TTAAACACGGTTGAGTAAAAGATGAAAGG
Found at i:504442 original size:731 final size:729
Alignment explanation
Indices: 502995--504455 Score: 2827
Period size: 730 Copynumber: 2.0 Consensus size: 729
502985 AATTTTTCAA
502995 TTTTTGTGACTTTTTTGGCTTTTTGATTTTTCTTTTTTTTCGACCTTTTTCATCTTCTTTTTTTG
1 TTTTTGTGACTTTTTTGGCTTTTTGATTTTTCTTTTTTTTCGACCTTTTTCATCTTCTTTTTTTG
503060 AAAAATAGAAGACTAACATGAAGGATTTCAATCTAAATTAAAATTAAATAACAAGAACCTGAAAC
66 AAAAATAGAAGACTAACATGAAGGATTTCAATCTAAATTAAAATTAAATAACAAGAACCTGAAAC
503125 GATGAATCTTTTGTGAACTAGCTCCGTTGGGGTACCTTGACGGTTTTATTTGCAAAACCAAGCAT
131 GATGAATCTTTTGTGAACTAGCTCCGTTGGGGTACCTTGACGGTTTTATTTGCAAAACCAAGCAT
503190 GATTGTTAATCCTTGTTAAAACTGCTTTTTTGCATGGTGATTTAGATGAGCAGATCTACATGCGG
196 GATTGTTAATCCTTGTTAAAACTGCTTTTTTGCATGGTGATTTAGATGAGCAGATCTACATGCGG
503255 CAACCTGAAGGTTTCACTCAACCTGGAAACGAGGATTTAGTTTGCAGGTTGAAGAAATCTTTGTA
261 CAACCTGAAGGTTTCACTCAACCTGGAAACGAGGATTTAGTTTGCAGGTTGAAGAAATCTTTGTA
503320 CGGGTTGAAACAGTCTCCGAGACAATGGTATAAACGGTTTGACTCCTATATGATCAAGATTGGTT
326 CGGGTTGAAACAGTCTCCGAGACAATGGTATAAACGGTTTGACTCCTATATGATCAAGATTGGTT
503385 ACAAACGATGTGAGTATGATTGTTGTGTCTATGTTAAGAGCCTTGATGATGGTTCTTTTATTTTC
391 ACAAACGATGTGAGTATGATTGTTGTGTCTATGTTAAGAGCCTTGATGATGGTTCTTTTATTTTC
503450 CTATTACTGTATGTTGATGATATGTTGATTGCTGCGAAGAACATGGATGATGTTATTGGTTTGAA
456 CTATTACTGTATGTTGATGATATGTTGATTGCTGCGAAGAACATGGATGATGTTATTGGTTTGAA
503515 AACTTTATTGAGTTAGGAATTTGATATGAAAGATTTAGGTGCTGCAAAGAAAATTCTTGGAATGG
521 AACTTTATTGAGTTAGGAATTTGATATGAAAGATTTAGGTGCTGCAAAGAAAATTCTTGGAATGG
503580 AAATTTGCAGGGACAGAGACTCAAGGAAACTGTGGCTATCTTAACGGGGTTATGTTAAAAAAAAT
586 AAATTTGCAGGGACAGAGACTCAAGGAAACTGTGGCTATCTTAACGGGGTTATGTTAAAAAAAAT
503645 GCTAGAAAGGTTTGCGATGAGCAGCGCAAAACCAGTTAGCACTCCATTGGCGAACCACTTTAAGC
651 GCTAGAAAGGTTTGCGATGAGCAGCGCAAAACCAGTTAGCACTCCATTGGCGAACCACTTTAAGC
503710 TCTCATCAGAACAG
716 TCTCATCAGAACAG
503724 TTTTTGTGACTTTTTTTGGCTTTTTGATTTTTCTTTTTTTTC-AGCCTTTTTCATCTTCTTTTTT
1 TTTTTGTGAC-TTTTTTGGCTTTTTGATTTTTCTTTTTTTTCGA-CCTTTTTCATCTTCTTTTTT
* *
503788 TGAAAAATAGCAA-ACTAACATGAATGATTTGAATCTAAATTAAAATTAAATAACAAGAACCTGA
64 TGAAAAATAG-AAGACTAACATGAAGGATTTCAATCTAAATTAAAATTAAATAACAAGAACCTGA
503852 AACGATGAATCTTTTGTGAACTAGCTCCGTTGGGGTACCTTGACGGTTTTATTTGCAAAACCAAG
128 AACGATGAATCTTTTGTGAACTAGCTCCGTTGGGGTACCTTGACGGTTTTATTTGCAAAACCAAG
503917 CATGATTGTTAATCCTTGTTAAAACTGCTTTTTTGCATGGTGATTTAGATGAGCAGATCTACATG
193 CATGATTGTTAATCCTTGTTAAAACTGCTTTTTTGCATGGTGATTTAGATGAGCAGATCTACATG
*
503982 CGGCAACCTGAAGGTTTCACTCAACCTGGAAACGAGGATTTAGTTTTCAGGTTGAAGAAATCTTT
258 CGGCAACCTGAAGGTTTCACTCAACCTGGAAACGAGGATTTAGTTTGCAGGTTGAAGAAATCTTT
504047 GTACGGGTTGAAACAGTCTCCGAGACAATGGTATAAACGGTTTGACTCCTATATGATCAAGATTG
323 GTACGGGTTGAAACAGTCTCCGAGACAATGGTATAAACGGTTTGACTCCTATATGATCAAGATTG
504112 GTTACAAACGATGTGAGTATGATTGTTGTGTCTATGTTAAGAGCCTTGATGATGGTTCTTTTATT
388 GTTACAAACGATGTGAGTATGATTGTTGTGTCTATGTTAAGAGCCTTGATGATGGTTCTTTTA-T
504177 TTTCCTATTACTGTATGTTGATGATATGTTGATTGCTGCGAAGAACATGGATGATGTTATTGGTT
452 TTTCCTATTACTGTATGTTGATGATATGTTGATTGCTGCGAAGAACATGGATGATGTTATTGGTT
504242 TGAAAACTTTATTGAGTTAGGAATTTGATATGAAAGATTTAGGTGCTGCAAAGAAAATTCTTGGA
517 TGAAAACTTTATTGAGTTAGGAATTTGATATGAAAGATTTAGGTGCTGCAAAGAAAATTCTTGGA
504307 ATGGAAATTTGCAGGGACAGAGACTCAAGGAAACTGTGGCTATCTTAACGGGGTTATGTTAAAAA
582 ATGGAAATTTGCAGGGACAGAGACTCAAGGAAACTGTGGCTATCTTAACGGGGTTATGTTAAAAA
*
504372 AAATGCTAGAAAGGTTTGCGATGAGCAGCGCAAAACCAGTTAGCACTCCATTGGCGAACGACTTT
647 AAATGCTAGAAAGGTTTGCGATGAGCAGCGCAAAACCAGTTAGCACTCCATTGGCGAACCACTTT
*
504437 AAGCTCTCATCATAACAG
712 AAGCTCTCATCAGAACAG
504455 T
1 T
504456 GCCCTAAGAC
Statistics
Matches: 723, Mismatches: 5, Indels: 6
0.99 0.01 0.01
Matches are distributed among these distances:
729 11 0.02
730 432 0.60
731 280 0.39
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (729 bp):
TTTTTGTGACTTTTTTGGCTTTTTGATTTTTCTTTTTTTTCGACCTTTTTCATCTTCTTTTTTTG
AAAAATAGAAGACTAACATGAAGGATTTCAATCTAAATTAAAATTAAATAACAAGAACCTGAAAC
GATGAATCTTTTGTGAACTAGCTCCGTTGGGGTACCTTGACGGTTTTATTTGCAAAACCAAGCAT
GATTGTTAATCCTTGTTAAAACTGCTTTTTTGCATGGTGATTTAGATGAGCAGATCTACATGCGG
CAACCTGAAGGTTTCACTCAACCTGGAAACGAGGATTTAGTTTGCAGGTTGAAGAAATCTTTGTA
CGGGTTGAAACAGTCTCCGAGACAATGGTATAAACGGTTTGACTCCTATATGATCAAGATTGGTT
ACAAACGATGTGAGTATGATTGTTGTGTCTATGTTAAGAGCCTTGATGATGGTTCTTTTATTTTC
CTATTACTGTATGTTGATGATATGTTGATTGCTGCGAAGAACATGGATGATGTTATTGGTTTGAA
AACTTTATTGAGTTAGGAATTTGATATGAAAGATTTAGGTGCTGCAAAGAAAATTCTTGGAATGG
AAATTTGCAGGGACAGAGACTCAAGGAAACTGTGGCTATCTTAACGGGGTTATGTTAAAAAAAAT
GCTAGAAAGGTTTGCGATGAGCAGCGCAAAACCAGTTAGCACTCCATTGGCGAACCACTTTAAGC
TCTCATCAGAACAG
Found at i:511069 original size:36 final size:38
Alignment explanation
Indices: 511028--511103 Score: 129
Period size: 36 Copynumber: 2.1 Consensus size: 38
511018 TAATGTATGT
511028 TTTACCGTAATTACTATATTTTATTG-A-ACATGGAAA
1 TTTACCGTAATTACTATATTTTATTGAATACATGGAAA
*
511064 TTTACCGTAATTACTATGTTTTATTGAATACATGGAAA
1 TTTACCGTAATTACTATATTTTATTGAATACATGGAAA
511102 TT
1 TT
511104 ATATTGTGAA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
36 25 0.68
37 1 0.03
38 11 0.30
ACGTcount: A:0.34, C:0.11, G:0.12, T:0.43
Consensus pattern (38 bp):
TTTACCGTAATTACTATATTTTATTGAATACATGGAAA
Found at i:511254 original size:45 final size:45
Alignment explanation
Indices: 511193--511534 Score: 483
Period size: 45 Copynumber: 7.6 Consensus size: 45
511183 GAAAGGATGC
* *
511193 ATAGTTGAAATGCATATGGGTGCATTGTCAACAGGAAAGTATACC
1 ATAGTTGAAATGCATATGGGTGCATTGTCAACAGAAAAGTATACT
* * *
511238 ATCGTTGAAATGCATATGGGTGCATTATCAATAGAAAAGTATACT
1 ATAGTTGAAATGCATATGGGTGCATTGTCAACAGAAAAGTATACT
* *
511283 ATAGTTGAAATGCATATGGGTGCATTATCAACAGAAAAGTATGCT
1 ATAGTTGAAATGCATATGGGTGCATTGTCAACAGAAAAGTATACT
* *
511328 ATAGTTGAAATACATATGGGTGCATTGTCAACAGAAAAGTATGCT
1 ATAGTTGAAATGCATATGGGTGCATTGTCAACAGAAAAGTATACT
* *
511373 ATAGTTGAAATGCATATGGGTGTATTGTCAACAGAAAAGTATGCT
1 ATAGTTGAAATGCATATGGGTGCATTGTCAACAGAAAAGTATACT
*
511418 ATAGTTGAAATGCATATGGGTGCATTGTTAACAGAAAA-TCATAGC-
1 ATAGTTGAAATGCATATGGGTGCATTGTCAACAGAAAAGT-ATA-CT
* **
511463 ATAGTTGAAGTGCATATGGGTGCATTGTCAACAGAAAAGTATGTT
1 ATAGTTGAAATGCATATGGGTGCATTGTCAACAGAAAAGTATACT
*
511508 ATAGTTAAAAATGCATAAT-GGTGCATT
1 ATAGTT-GAAATGCAT-ATGGGTGCATT
511535 ATAAGCATGA
Statistics
Matches: 270, Mismatches: 21, Indels: 11
0.89 0.07 0.04
Matches are distributed among these distances:
44 1 0.00
45 250 0.93
46 17 0.06
47 2 0.01
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.30
Consensus pattern (45 bp):
ATAGTTGAAATGCATATGGGTGCATTGTCAACAGAAAAGTATACT
Found at i:516154 original size:2 final size:2
Alignment explanation
Indices: 516139--516171 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
516129 TATTGCAAAC
516139 TA TA T- TA T- TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
516172 CATTATTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 27 0.93
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (2 bp):
TA
Found at i:517217 original size:2 final size:2
Alignment explanation
Indices: 517210--517235 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
517200 CCCACTATTA
517210 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
517236 TTTATATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:517281 original size:23 final size:22
Alignment explanation
Indices: 517240--517291 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 22
517230 ATATATTTTA
* *
517240 TATTTTTTTCTGTTTTTACTAT
1 TATTATTTTCGGTTTTTACTAT
*
517262 TTTTATTTTCGGTTTGTTACTAT
1 TATTATTTTCGGTTT-TTACTAT
517285 TATTATT
1 TATTATT
517292 ATATTTATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
22 12 0.48
23 13 0.52
ACGTcount: A:0.15, C:0.08, G:0.08, T:0.69
Consensus pattern (22 bp):
TATTATTTTCGGTTTTTACTAT
Found at i:538426 original size:20 final size:20
Alignment explanation
Indices: 538385--538442 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 20
538375 AAAAATGTAG
*
538385 TAATTATGCAAAATGTTG-TAA
1 TAATT-TGCATAAT-TTGATAA
538406 TAATTTGCATAATTTGATAA
1 TAATTTGCATAATTTGATAA
** *
538426 TCTTTTTCATAATTTGA
1 TAATTTGCATAATTTGA
538443 CAAACACGCA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
19 3 0.09
20 24 0.75
21 5 0.16
ACGTcount: A:0.36, C:0.07, G:0.10, T:0.47
Consensus pattern (20 bp):
TAATTTGCATAATTTGATAA
Found at i:542973 original size:21 final size:21
Alignment explanation
Indices: 542949--542990 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
542939 AGTTTATTTT
*
542949 TAAACTTTATTTTAATTATCG
1 TAAACTTTATTTCAATTATCG
*
542970 TAAACTTTGTTTCAATTATCG
1 TAAACTTTATTTCAATTATCG
542991 AACTTGAAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.31, C:0.12, G:0.07, T:0.50
Consensus pattern (21 bp):
TAAACTTTATTTCAATTATCG
Found at i:543038 original size:33 final size:33
Alignment explanation
Indices: 542979--543087 Score: 170
Period size: 33 Copynumber: 3.4 Consensus size: 33
542969 GTAAACTTTG
542979 TTTCAA-TTATCGAACTT-GAAGTTTTTAAGTA
1 TTTCAATTTATCGAACTTGGAAGTTTTTAAGTA
*
543010 TTTGAATTTATCGAACTTGGAAGTTTTTAAGTA
1 TTTCAATTTATCGAACTTGGAAGTTTTTAAGTA
* *
543043 TTTTAATTTATCGAACTTGGAAGTATTTAAGTA
1 TTTCAATTTATCGAACTTGGAAGTTTTTAAGTA
543076 TTTCAA-TTATCG
1 TTTCAATTTATCG
543088 TAAACTTTGT
Statistics
Matches: 72, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
31 5 0.07
32 17 0.24
33 50 0.69
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (33 bp):
TTTCAATTTATCGAACTTGGAAGTTTTTAAGTA
Found at i:543168 original size:17 final size:18
Alignment explanation
Indices: 543148--543181 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
543138 GTTTTTTTAT
543148 AACCGGA-TTTTTAAAAA
1 AACCGGATTTTTTAAAAA
543165 AACCGGATTTTTTAAAA
1 AACCGGATTTTTTAAAA
543182 CCGAAACCGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.32
Consensus pattern (18 bp):
AACCGGATTTTTTAAAAA
Found at i:543183 original size:15 final size:15
Alignment explanation
Indices: 543129--543184 Score: 58
Period size: 15 Copynumber: 3.6 Consensus size: 15
543119 TTTAATAATA
* *
543129 TTAAAATCGGTTTTT
1 TTAAAACCGGATTTT
*
543144 TTATAACCGGATTTT
1 TTAAAACCGGATTTT
*
543159 TAAAAAAACCGGATTTT
1 T--TAAAACCGGATTTT
543176 TTAAAACCG
1 TTAAAACCG
543185 AAACCGGTTA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
15 20 0.61
17 13 0.39
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.39
Consensus pattern (15 bp):
TTAAAACCGGATTTT
Found at i:543300 original size:15 final size:17
Alignment explanation
Indices: 543274--543305 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
543264 TTCTATGGGA
543274 AAAAACCGGAT-CGGAT
1 AAAAACCGGATCCGGAT
543290 AAAAACC-GATCCGGAT
1 AAAAACCGGATCCGGAT
543306 CGGATTGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 3 0.20
16 12 0.80
ACGTcount: A:0.44, C:0.22, G:0.22, T:0.12
Consensus pattern (17 bp):
AAAAACCGGATCCGGAT
Found at i:553046 original size:23 final size:23
Alignment explanation
Indices: 553011--553069 Score: 91
Period size: 23 Copynumber: 2.6 Consensus size: 23
553001 ATCAAGTACA
*
553011 ATAATATATTAGGTAGCGCTTAT
1 ATAATATAATAGGTAGCGCTTAT
*
553034 ATAATGTAATAGGTAGCGCTTAT
1 ATAATATAATAGGTAGCGCTTAT
*
553057 ATAATAAAATAGG
1 ATAATATAATAGG
553070 CATTTAACCG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.41, C:0.07, G:0.19, T:0.34
Consensus pattern (23 bp):
ATAATATAATAGGTAGCGCTTAT
Found at i:553129 original size:87 final size:87
Alignment explanation
Indices: 552983--553145 Score: 299
Period size: 87 Copynumber: 1.9 Consensus size: 87
552973 TATGTTATAT
*
552983 CATTTAACCGAAAATATTATCAAGTACAATAATATATTAGGTAGCGCTTATATAATGTAATAGGT
1 CATTTAACCGAAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
553048 AGCGCTTATATAATAAAATAGG
66 AGCGCTTATATAATAAAATAGG
* *
553070 CATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAGTGCTTATATAATGTAATAGGT
1 CATTTAACCGAAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
553135 AGCGCTTATAT
66 AGCGCTTATAT
553146 TGACCTATTT
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
87 73 1.00
ACGTcount: A:0.40, C:0.11, G:0.15, T:0.33
Consensus pattern (87 bp):
CATTTAACCGAAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
AGCGCTTATATAATAAAATAGG
Found at i:553634 original size:198 final size:197
Alignment explanation
Indices: 553146--553662 Score: 633
Period size: 196 Copynumber: 2.6 Consensus size: 197
553136 GCGCTTATAT
* * * *
553146 TGACCTATTTTCTAAGT-AAACCGGTATA-TTATACCGGTAACATTGCAAATTTATCTATTACAT
1 TGACCTATTTTCTAA-TAAAACTGGTATATTTATACCGGTTACATTGTAAATTTACCTATTACAT
* * *
553209 TATAATTA--GGTTTCGATGTTTTTTGGATCGATACAATTT--TAAATGTATTGACACTTTATGC
65 TATAATTATCGGTTTCGATG-TTTTAGGATCGATAC-TTTTAATAAATGTATCGACACTTTATGC
* * *
553270 ATGCACCTCGTTGGGCATTCATTCTGGAAAAAAGTATCGACGCAAACTTAAAAAGTGTCGATACA
128 ATGCACCTCGTTGGGCATTCATTATGGAAAAAAGTATCGACACAAACTTAAAAAGTGTCAATACA
*
553335 TTATT
193 TTATC
* * * *
553340 TAGACCTTTTTTCTCATAAAA-TCGGTAT-TTCTAT--CGGATACATTGTAAATTTACCTATCAC
1 T-GACCTATTTTCTAATAAAACT-GGTATATT-TATACCGGTTACATTGTAAATTTACCTATTAC
* *
553401 ATTGTAATTATCGGTTTCGATGTTTGTGGGATCGATACTTTTAATAAATGTATCGACA-TTTATG
63 ATTATAATTATCGGTTTCGATGTTT-TAGGATCGATACTTTTAATAAATGTATCGACACTTTATG
* * * * *
553465 CATGCACCTCGTTTGGCATTCATTATGGACAAAAGTATCGACACAAATTTAAATAGTGTTAATAC
127 CATGCACCTCGTTGGGCATTCATTATGGAAAAAAGTATCGACACAAACTTAAAAAGTGTCAATAC
*
553530 TTTATGC
192 ATTAT-C
* * *
553537 TGACATATTTTCTTATAAAACTGGTATATTTATACCAGTTACATTGTAAATTTACCTATTACATT
1 TGACCTATTTTCTAATAAAACTGGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATT
*
553602 ATAATTATCGGTTTCTATGTTATTAGGATCGATACTTTTAATAAATGTATCGACACTTTAT
66 ATAATTATCGGTTTCGATGTT-TTAGGATCGATACTTTTAATAAATGTATCGACACTTTAT
553663 ATTTTGGACA
Statistics
Matches: 275, Mismatches: 31, Indels: 29
0.82 0.09 0.09
Matches are distributed among these distances:
194 33 0.12
195 27 0.10
196 115 0.42
197 17 0.06
198 77 0.28
199 6 0.02
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.40
Consensus pattern (197 bp):
TGACCTATTTTCTAATAAAACTGGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATT
ATAATTATCGGTTTCGATGTTTTAGGATCGATACTTTTAATAAATGTATCGACACTTTATGCATG
CACCTCGTTGGGCATTCATTATGGAAAAAAGTATCGACACAAACTTAAAAAGTGTCAATACATTA
TC
Found at i:557658 original size:200 final size:199
Alignment explanation
Indices: 557289--558056 Score: 991
Period size: 200 Copynumber: 3.8 Consensus size: 199
557279 GCGTAATTTA
* *
557289 AAAACGTATCGACACAAATTT-AAAAGTGTCGATACACTATGTTAACCTATTTTCTCATAAAATC
1 AAAATGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTT-ACCTATTTTCTCATAAAATC
* *
557353 GGTATATTTATACCAGTTACATTGTAAATTTACCTATTACATTATAATTTTCGGTTTCGATGTTT
65 AGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTTTCGGTTTCGATGTTT
* * *
557418 TTTGGATCGATACTTTTTATAAATGTAACGACATTTTATGCGTGCACACTGTTTTGCATTCATTC
130 TTTGGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTGCACACTGTTTAGCATTCATTC
557483 TGGAT
195 TGGAT
*
557488 AAAATGTATCGACACAAATCTAAAAAGTGTCGATACATTATGTTCACCTATTTTCTCATAAAA-C
1 AAAATGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTT-ACCTATTTTCTCATAAAATC
* * *
557552 TAGTATACTTATACCGGTTACATTTTAAATTTACCTATTACATTATAATTATCGGTTTCGATG-T
65 -AGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTTTCGGTTTCGATGTT
* * * * *
557616 TTTTGAGATCGATACTTTTTAAAAATGTATTGACACTTTATGCGTGCACCCCGTTTGGCATTCAT
129 TTTTG-GATCGATACTTTTTATAAATGTATCGACACTTTATGCGTGCACACTGTTTAGCATTCAT
* *
557681 TATGGAC
193 TCTGGAT
* * *
557688 AAAATGTATCGACACAAATTTAAACAA-TATCAATACATTATGTATACCTATTTTCTCTTAAAA-
1 AAAATGTATCGACACAAATTTAAA-AAGTGTCGATACATTATGT-TACCTATTTTCTCATAAAAT
* * * *
557751 CCGATATATTTATACCGATTACATTGTATATTTACCTATTACATTATAATTTTCGTTTTCGATGT
64 CAG-TATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTTTCGGTTTCGATGT
* ** *
557816 TTTTTAGATCGATACAATTT-TAAATGTATCGACACTTTTATGCGTG-A-AGCTCGTTAAGCA--
128 TTTTTGGATCGATACTTTTTATAAATGTATCGACAC-TTTATGCGTGCACA-CT-GTTTAGCATT
* **
557876 AAGGCTTGG-T
190 CATTC-TGGAT
* * * * *
557886 CAAAAGGTATCGACACAAATTTAAAAGGTGTCGATACTTTATGCTGACCTATTTGCTCATAAAAT
1 -AAAATGTATCGACACAAATTTAAAAAGTGTCGATACATTATG-TTACCTATTTTCTCATAAAAT
* *
557951 CAGTATATTTATACCGGTCACATTGTAAATTTACCTATTACATTATAATTTTCGGTTTTGATGTT
64 CAGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTTTCGGTTTCGATGTT
558016 TTTTGGATCGATACTTTTTATAAATGTATCGACACTTTATG
129 TTTTGGATCGATACTTTTTATAAATGTATCGACACTTTATG
558057 GGAAACTTTA
Statistics
Matches: 493, Mismatches: 60, Indels: 32
0.84 0.10 0.05
Matches are distributed among these distances:
198 2 0.00
199 175 0.35
200 308 0.62
201 8 0.02
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.40
Consensus pattern (199 bp):
AAAATGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTTACCTATTTTCTCATAAAATCA
GTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTTTCGGTTTCGATGTTTT
TTGGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTGCACACTGTTTAGCATTCATTCT
GGAT
Found at i:558032 original size:399 final size:398
Alignment explanation
Indices: 557289--558056 Score: 1077
Period size: 399 Copynumber: 1.9 Consensus size: 398
557279 GCGTAATTTA
* * * *
557289 AAAACGTATCGACACAAATTTAAAAGTGTCGATACACTATGTTAACCTATTTTCTCATAAAATCG
1 AAAACGTATCGACACAAATTTAAAAATATCAATACACTATGTTAACCTATTTTCTCATAAAACCG
*
557354 GTATATTTATACCAGTTACATTGTAAATTTACCTATTACATTATAATTTTCGGTTTCGATGTTTT
66 ATATATTTATACCAGTTACATTGTAAATTTACCTATTACATTATAATTTTCGGTTTCGATGTTTT
* ** ** * **
557419 TTGGATCGATACTTTTTATAAATGTAACGACATTTTATGCGTGCACACTGTTTTGCATTCATTCT
131 TTAGATCGATACAATTTATAAATGTAACGACATTTTATGCGTGCACACTGTTAAGCA-TAAGGCT
* * *
557484 GGATAAAATGTATCGACACAAATCTAAAAAGTGTCGATACATTATGTTCACCTATTTTCTCATAA
195 GGATAAAAGGTATCGACACAAATCTAAAAAGTGTCGATACATTATGCTCACCTATTTGCTCATAA
* *
557549 AACTAGTATACTTATACCGGTTACATTTTAAATTTACCTATTACATTATAATTATCGGTTTCGAT
260 AACTAGTATACTTATACCGGTCACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGAT
*
557614 GTTTTTGAGATCGATACTTTTTAAAAATGTATTGACACTTTATGCGTGCACCCCGTTTGGCATTC
325 GTTTTTGAGATCGATACTTTTTAAAAATGTATCGACACTTTATGCGTGCACCCCGTTTGGCATTC
557679 ATTATGGAC
390 ATTATGGAC
* * *
557688 AAAATGTATCGACACAAATTTAAACAATATCAATACATTATG-TATACCTATTTTCTCTTAAAAC
1 AAAACGTATCGACACAAATTTAAA-AATATCAATACACTATGTTA-ACCTATTTTCTCATAAAAC
* *
557752 CGATATATTTATACC-GATTACATTGTATATTTACCTATTACATTATAATTTTCGTTTTCGATGT
64 CGATATATTTATACCAG-TTACATTGTAAATTTACCTATTACATTATAATTTTCGGTTTCGATGT
*
557816 TTTTTAGATCGATACAATTT-TAAATGTATCGACACTTTTATGCGTG-A-AGCTCGTTAAGCA-A
128 TTTTTAGATCGATACAATTTATAAATGTAACGACA-TTTTATGCGTGCACA-CT-GTTAAGCATA
* * * *
557877 AGGCTTGG-TCAAAAGGTATCGACACAAATTTAAAAGGTGTCGATACTTTATGCTGACCTATTTG
190 AGGC-TGGAT-AAAAGGTATCGACACAAATCTAAAAAGTGTCGATACATTATGCTCACCTATTTG
* *
557941 CTCATAAAA-TCAGTATATTTATACCGGTCACATTGTAAATTTACCTATTACATTATAATTTTCG
253 CTCATAAAACT-AGTATACTTATACCGGTCACATTGTAAATTTACCTATTACATTATAATTATCG
* *
558005 GTTTTGATGTTTTTTG-GATCGATACTTTTTATAAATGTATCGACACTTTATG
317 GTTTCGATG-TTTTTGAGATCGATACTTTTTAAAAATGTATCGACACTTTATG
558057 GGAAACTTTA
Statistics
Matches: 326, Mismatches: 33, Indels: 20
0.86 0.09 0.05
Matches are distributed among these distances:
398 5 0.02
399 192 0.59
400 129 0.40
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.40
Consensus pattern (398 bp):
AAAACGTATCGACACAAATTTAAAAATATCAATACACTATGTTAACCTATTTTCTCATAAAACCG
ATATATTTATACCAGTTACATTGTAAATTTACCTATTACATTATAATTTTCGGTTTCGATGTTTT
TTAGATCGATACAATTTATAAATGTAACGACATTTTATGCGTGCACACTGTTAAGCATAAGGCTG
GATAAAAGGTATCGACACAAATCTAAAAAGTGTCGATACATTATGCTCACCTATTTGCTCATAAA
ACTAGTATACTTATACCGGTCACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATG
TTTTTGAGATCGATACTTTTTAAAAATGTATCGACACTTTATGCGTGCACCCCGTTTGGCATTCA
TTATGGAC
Found at i:558347 original size:24 final size:24
Alignment explanation
Indices: 558284--558336 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
558274 AGTGGAGCCG
*
558284 AAATTTATATTGAAATTCAAACTC
1 AAATTTAAATTGAAATTCAAACTC
*
558308 AAATTTAAATTTAAATTCAAACTC
1 AAATTTAAATTGAAATTCAAACTC
*
558332 CAATT
1 AAATT
558337 ACATATGAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.47, C:0.13, G:0.02, T:0.38
Consensus pattern (24 bp):
AAATTTAAATTGAAATTCAAACTC
Found at i:560824 original size:16 final size:17
Alignment explanation
Indices: 560803--560835 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
560793 CAGAAGAAGC
560803 GATTGT-TTGAGAAGAA
1 GATTGTGTTGAGAAGAA
560819 GATTGTGGTTGAGAAGA
1 GATTGT-GTTGAGAAGA
560836 CCTGAAAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.33, C:0.00, G:0.36, T:0.30
Consensus pattern (17 bp):
GATTGTGTTGAGAAGAA
Found at i:561823 original size:199 final size:199
Alignment explanation
Indices: 561150--562309 Score: 1424
Period size: 199 Copynumber: 5.8 Consensus size: 199
561140 TTTAAAATGG
* * * * * * *
561150 TATCGACACAAATTT-AGCAATTGTCGATACTTTATGTTGACCTATTTTCTCATAAAATCGGTAT
1 TATCGACACAAATTTCA-AAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAA-CCGTAT
** * ** * *
561214 ATTTATACCGGTTACATTGGAAATTTACCTATTACATTATAATTATCAGTTTCAATGTTTTTGGG
64 ATTTATACCGGTTACATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTCTGGG
* * * * * * *
561279 ATTGACACTTTTTAAAAATGTATTGACACTTAATGGGTGCACCCTTTT-GGCATTCCTTCTGGAC
129 ATCGACACTTTTTATAAATGTATCGACACTTTATGCGTGCACCATTTTGGGCATTCATTCTGGAC
*
561343 AAAAAG
194 AAAAAT
* * * * * * * *
561349 TATCGACACAAATTCCATAAGTGTCGATATATTTTCTAAATCTATTCTCGCATAAAACCGATATA
1 TATCGACACAAATTTCAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAACCG-TATA
* *
561414 TTTATAGCGATTACATTGA-AAAATTACCTATTACATTATAA-TATTGGGTTTCGATGTTTCT-G
65 TTTATACCGGTTACATT-ACAAAATTACCTATTACATTATAATTA-TGGGTTTCGATGTTTCTGG
* *
561476 GATCGATACTTTTTATAAATGTATCGACACTTTATGCGTGCACCAATTTTTTGGGCATTCATTAT
128 GATCGACACTTTTTATAAATGTATCGACACTTTATGCGTGCACC-A--TTTTGGGCATTCATTCT
561541 GGAC-AAAAT
190 GGACAAAAAT
* * * * *
561550 GTATCAACACAAAATTAAAAAGTGTCAATACATTTTGTAGACCTATTCTCACATAAAACCGATAT
1 -TATCGACACAAATTTCAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAACCG-TAT
*
561615 ATTTATACCGGTTACATTACAAAATTACCTATTACATTATAATTATGGG-TTCGATGTCTCTGGG
64 ATTTATACCGGTTACATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTCTGGG
* * * *
561679 ATCGACATTTTTTAAAAATGTATCGACACTTTATGCATTCACCATTTTGGGCATTCATTCTGGAC
129 ATCGACACTTTTTATAAATGTATCGACACTTTATGCGTGCACCATTTTGGGCATTCATTCTGGAC
561744 AAAAAT
194 AAAAAT
* * * * *
561750 TATCAACACCAATTTCAAATA-TGTCGATACATTATGTAGACATATTCTCGCATAAAACATGTAT
1 TATCGACACAAATTTCAAA-AGTGTCGATACATTATGTAGACCTATTCTCACATAAAAC-CGTAT
* * *
561814 ATTTATACCGGTTACATTGA-AAAATCACCTATTACATTATAATAATGGGTTTCGATGTTTTTGG
64 ATTTATACCGGTTACATT-ACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTCTGG
* * * *
561878 TATCGATACTTTTTATAAATGTATCTACACTTTATGCGTGCACCATTTTTTTGGGCATTTATTCT
128 GATCGACACTTTTTATAAATGTATCGACACTTTATGCGTGCACCA---TTTTGGGCATTCATTCT
561943 GGAC-AAAAT
190 GGACAAAAAT
* * * *
561952 GTATCGACACAAAATTAAAAAGTGCCGATACATTATGTAGACCTATTCTCACATAAAATCAGTAT
1 -TATCGACACAAATTTCAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAA-CCGTAT
* *
562017 ATTTATACCGGTTACATTACAAAATTACATATTACATTATAATTATGGG-TTCGATGTCTCTGGG
64 ATTTATACCGGTTACATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTCTGGG
* *
562081 ATCGACACTTTTTATAAATGTATCGACACTTTATGCGTTCACCATTTTGGGCATTCATTCTAGAC
129 ATCGACACTTTTTATAAATGTATCGACACTTTATGCGTGCACCATTTTGGGCATTCATTCTGGAC
*
562146 AAAAAG
194 AAAAAT
* *
562152 TATCGACACCAATTTCAAAAGTGTCGATACATTATGTAGACTTATTCTCACATAAAACCGGTATA
1 TATCGACACAAATTTCAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAACC-GTATA
* * *
562217 TTTATACTGGTTATATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGA
65 TTTATACCGGTTACATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTCTGGGA
* *
562282 TCGATACTTTTTATAAATGTATCAACAC
130 TCGACACTTTTTATAAATGTATCGACAC
562310 ATCTGCTTAC
Statistics
Matches: 830, Mismatches: 104, Indels: 53
0.84 0.11 0.05
Matches are distributed among these distances:
198 44 0.05
199 334 0.40
200 103 0.12
201 21 0.03
202 209 0.25
203 118 0.14
204 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.37
Consensus pattern (199 bp):
TATCGACACAAATTTCAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAACCGTATAT
TTATACCGGTTACATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTCTGGGAT
CGACACTTTTTATAAATGTATCGACACTTTATGCGTGCACCATTTTGGGCATTCATTCTGGACAA
AAAT
Found at i:562033 original size:402 final size:398
Alignment explanation
Indices: 561143--562309 Score: 1656
Period size: 402 Copynumber: 2.9 Consensus size: 398
561133 CGCAATTTTT
* ** * * * * *
561143 AAAATGGTATCGACACAAATTTAGCAATTGTCGATACTTTATGTTGACCTATTTTCTCATAAAAT
1 AAAAT-GTATCGACACAAAATTAAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAAT
* ** * * * * *
561208 CGGTATATTTATACCGGTTACATTGGAAATTTACCTATTACATTATAATTATCAGTTTCAATGTT
65 CAGTATATTTATACCGGTTACATTACAAAATTACCTATTACATTATAATTAT-GGGTTCGATGTC
* * * * * * * *
561273 TTTGGGATTGACACTTTTTAAAAATGTATTGACACTTAATGGGTGCACCCTTTT-GGCATTCCTT
129 TCTGGGATCGACACTTTTTAAAAATGTATCGACACTTTATGCGTTCACCATTTTGGGCATTCATT
* * * * * * *
561337 CTGGACAAAAAGTATCGACACAAATTCCATAAGTGTCGATATATTTTCTAAATCTATTCTCGCAT
194 CTGGACAAAAAGTATCGACACCAATTTCA-AAATGTCGATACATTATGTAGA-CTATTCTCGCAT
* * *
561402 AAAACCGATATATTTATAGCGATTACATTGAAAAATTACCTATTACATTATAATATTGGGTTTCG
257 AAAACCG-TATATTTATACCGGTTACATTGAAAAATTACCTATTACATTATAATAATGGGTTTCG
* *
561467 ATGTTTCTGGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTGCACCAATTTTTTGGGC
321 ATGTTTTTGGATCGATACTTTTTATAAATGTATCAACACTTTATGCGTGCACCAATTTTTTGGGC
561532 ATTCATTATGGAC
386 ATTCATTATGGAC
* * *
561545 AAAATGTATCAACACAAAATTAAAAAGTGTCAATACATTTTGTAGACCTATTCTCACATAAAA-C
1 AAAATGTATCGACACAAAATTAAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAATC
*
561609 CGATATATTTATACCGGTTACATTACAAAATTACCTATTACATTATAATTATGGGTTCGATGTCT
66 AG-TATATTTATACCGGTTACATTACAAAATTACCTATTACATTATAATTATGGGTTCGATGTCT
* *
561674 CTGGGATCGACATTTTTTAAAAATGTATCGACACTTTATGCATTCACCATTTTGGGCATTCATTC
130 CTGGGATCGACACTTTTTAAAAATGTATCGACACTTTATGCGTTCACCATTTTGGGCATTCATTC
* *
561739 TGGACAAAAATTATCAACACCAATTTCAAATATGTCGATACATTATGTAGACATATTCTCGCATA
195 TGGACAAAAAGTATCGACACCAATTTCAAA-ATGTCGATACATTATGTAGAC-TATTCTCGCATA
* *
561804 AAACATGTATATTTATACCGGTTACATTGAAAAATCACCTATTACATTATAATAATGGGTTTCGA
258 AAAC-CGTATATTTATACCGGTTACATTGAAAAATTACCTATTACATTATAATAATGGGTTTCGA
* *
561869 TGTTTTTGGTATCGATACTTTTTATAAATGTATCTACACTTTATGCGTGCACCATTTTTTTGGGC
322 TGTTTTTGG-ATCGATACTTTTTATAAATGTATCAACACTTTATGCGTGCACCAATTTTTTGGGC
* *
561934 ATTTATTCTGGAC
386 ATTCATTATGGAC
*
561947 AAAATGTATCGACACAAAATTAAAAAGTGCCGATACATTATGTAGACCTATTCTCACATAAAATC
1 AAAATGTATCGACACAAAATTAAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAATC
*
562012 AGTATATTTATACCGGTTACATTACAAAATTACATATTACATTATAATTATGGGTTCGATGTCTC
66 AGTATATTTATACCGGTTACATTACAAAATTACCTATTACATTATAATTATGGGTTCGATGTCTC
*
562077 TGGGATCGACACTTTTTATAAATGTATCGACACTTTATGCGTTCACCATTTTGGGCATTCATTCT
131 TGGGATCGACACTTTTTAAAAATGTATCGACACTTTATGCGTTCACCATTTTGGGCATTCATTCT
* *
562142 AGACAAAAAGTATCGACACCAATTTCAAAAGTGTCGATACATTATGTAGACTTATTCTCACATAA
196 GGACAAAAAGTATCGACACCAATTTCAAAA-TGTCGATACATTATGTAGAC-TATTCTCGCATAA
* * *
562207 AACCGGTATATTTATACTGGTTATATT-ACAAAATTACCTATTACATTATAATTATGGGTTTCGA
259 AACC-GTATATTTATACCGGTTACATTGA-AAAATTACCTATTACATTATAATAATGGGTTTCGA
562271 TGTTTTTGGGATCGATACTTTTTATAAATGTATCAACAC
322 TGTTTTT-GGATCGATACTTTTTATAAATGTATCAACAC
562310 ATCTGCTTAC
Statistics
Matches: 686, Mismatches: 68, Indels: 22
0.88 0.09 0.03
Matches are distributed among these distances:
400 58 0.08
401 222 0.32
402 402 0.59
403 4 0.01
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.37
Consensus pattern (398 bp):
AAAATGTATCGACACAAAATTAAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAATC
AGTATATTTATACCGGTTACATTACAAAATTACCTATTACATTATAATTATGGGTTCGATGTCTC
TGGGATCGACACTTTTTAAAAATGTATCGACACTTTATGCGTTCACCATTTTGGGCATTCATTCT
GGACAAAAAGTATCGACACCAATTTCAAAATGTCGATACATTATGTAGACTATTCTCGCATAAAA
CCGTATATTTATACCGGTTACATTGAAAAATTACCTATTACATTATAATAATGGGTTTCGATGTT
TTTGGATCGATACTTTTTATAAATGTATCAACACTTTATGCGTGCACCAATTTTTTGGGCATTCA
TTATGGAC
Found at i:562689 original size:19 final size:19
Alignment explanation
Indices: 562665--562706 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
562655 ATTCACATAT
562665 AAAATTATAAATCGTATAC
1 AAAATTATAAATCGTATAC
*
562684 AAAATTATAAATCTTATAC
1 AAAATTATAAATCGTATAC
562703 AAAA
1 AAAA
562707 ATAACCCTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.57, C:0.10, G:0.02, T:0.31
Consensus pattern (19 bp):
AAAATTATAAATCGTATAC
Found at i:564487 original size:33 final size:33
Alignment explanation
Indices: 564450--564549 Score: 182
Period size: 33 Copynumber: 3.0 Consensus size: 33
564440 CCATCTTAAG
564450 TTCACCCCTCAACACCTCAACTTCTTTCACCAC
1 TTCACCCCTCAACACCTCAACTTCTTTCACCAC
564483 TTCACCCCTCAACACCTCAACTTCTTTCACCAC
1 TTCACCCCTCAACACCTCAACTTCTTTCACCAC
* *
564516 TTCACCCCTCAACTCCTCAACTTTTTTCACCAC
1 TTCACCCCTCAACACCTCAACTTCTTTCACCAC
564549 T
1 T
564550 CCATCTATTT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 65 1.00
ACGTcount: A:0.23, C:0.47, G:0.00, T:0.30
Consensus pattern (33 bp):
TTCACCCCTCAACACCTCAACTTCTTTCACCAC
Found at i:564608 original size:21 final size:21
Alignment explanation
Indices: 564583--564626 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
564573 CCCCTTATGC
*
564583 CTCTCAAGTGTCTCTTCGACT
1 CTCTCAAGTGTCGCTTCGACT
*
564604 CTCTCAAGTTTCGCTTCGACT
1 CTCTCAAGTGTCGCTTCGACT
564625 CT
1 CT
564627 TGATTCTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.14, C:0.34, G:0.14, T:0.39
Consensus pattern (21 bp):
CTCTCAAGTGTCGCTTCGACT
Found at i:565195 original size:15 final size:15
Alignment explanation
Indices: 565175--565206 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
565165 GACATATTAG
565175 CCCAATTGAATTCAC
1 CCCAATTGAATTCAC
565190 CCCAATTGAATTCAC
1 CCCAATTGAATTCAC
565205 CC
1 CC
565207 TTCAAGCCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.31, C:0.38, G:0.06, T:0.25
Consensus pattern (15 bp):
CCCAATTGAATTCAC
Found at i:571141 original size:13 final size:13
Alignment explanation
Indices: 571123--571147 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
571113 CCACCAAACT
571123 GAACCGAAACATG
1 GAACCGAAACATG
571136 GAACCGAAACAT
1 GAACCGAAACAT
571148 TAAACAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.24, G:0.20, T:0.08
Consensus pattern (13 bp):
GAACCGAAACATG
Found at i:572781 original size:182 final size:182
Alignment explanation
Indices: 572472--572954 Score: 716
Period size: 182 Copynumber: 2.7 Consensus size: 182
572462 TATGCGTACT
* * * *
572472 TATTAAAGTATCGGCACTTTCAATATATCCGGTAGCGCTTTACCGGTTTTTTCCTTTAAAGACCG
1 TATTAAAGTATCGACACTTTCAATATATCTGGTAGCGCTTTACCGGTTTTATCCTTTAGAGACCG
* * * *
572537 ATTTTGTCATATTTTTACATGTTATATCGTTTTGGATCGATACATTTTTATAAAGTATCGACACT
66 ATTTTGTCATATTTTTACCTGTTATATCATTATGGATCGATACATTTTTATAAAGCATCGACACT
* *
572602 TTATAGGTGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATACTTA
131 TTATAGGAGCTAAAACTGATTCTCTTTTAAATTCACAAAGTGTCGATACTTA
* ** ** *
572654 TATTAAAGTATCGACACTTTCAATATATCTGGTCGTTCAATGCCGGTTTTATCCTTTAGAGACCG
1 TATTAAAGTATCGACACTTTCAATATATCTGGTAGCGCTTTACCGGTTTTATCCTTTAGAGACCG
* * *
572719 GTTTTGTCATATTTTTACCTGTTATATCATTATGGATCGATACGTTGTTATAAAGCATCGACACT
66 ATTTTGTCATATTTTTACCTGTTATATCATTATGGATCGATACATTTTTATAAAGCATCGACACT
* *
572784 TTATAGGAGCTACAACTGATTCTCTTTTAAATTCACAAAGTGTTGATACTTA
131 TTATAGGAGCTAAAACTGATTCTCTTTTAAATTCACAAAGTGTCGATACTTA
* * *
572836 TATTAAAGTATCGACACTTTCAATATATCTGGTAGCGCTTTACCGGTTTTGTCTTTTCGAGACCG
1 TATTAAAGTATCGACACTTTCAATATATCTGGTAGCGCTTTACCGGTTTTATCCTTTAGAGACCG
* *
572901 ATTTTGTCATATTTTTACCTGTTATATTGA-TGTGGATCGATACATTTTTATAAA
66 ATTTTGTCATATTTTTACCTGTTATA-TCATTATGGATCGATACATTTTTATAAA
572955 TTATTGACAT
Statistics
Matches: 265, Mismatches: 35, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
182 263 0.99
183 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.41
Consensus pattern (182 bp):
TATTAAAGTATCGACACTTTCAATATATCTGGTAGCGCTTTACCGGTTTTATCCTTTAGAGACCG
ATTTTGTCATATTTTTACCTGTTATATCATTATGGATCGATACATTTTTATAAAGCATCGACACT
TTATAGGAGCTAAAACTGATTCTCTTTTAAATTCACAAAGTGTCGATACTTA
Found at i:584788 original size:20 final size:20
Alignment explanation
Indices: 584739--584788 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
584729 GTTTTCTAGG
*
584739 TTGCAGTATCGATATTGTTC
1 TTGCAGTATTGATATTGTTC
** *
584759 TTTTAATATTGATATTGTTC
1 TTGCAGTATTGATATTGTTC
584779 TTGCAGTATT
1 TTGCAGTATT
584789 TGTACTATGA
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.22, C:0.10, G:0.16, T:0.52
Consensus pattern (20 bp):
TTGCAGTATTGATATTGTTC
Found at i:586951 original size:5 final size:5
Alignment explanation
Indices: 586922--586978 Score: 53
Period size: 5 Copynumber: 10.8 Consensus size: 5
586912 AACGGTCAAT
* *
586922 GGTCG GGT-G GGTCG GGTCAAC GGTCG GGTCG GGTCG GGTCAAC GGTCG
1 GGTCG GGTCG GGTCG GGTC--G GGTCG GGTCG GGTCG GGTC--G GGTCG
586970 GGTCG GGTC
1 GGTCG GGTC
586979 AGACCGGTCA
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
4 4 0.09
5 31 0.72
7 8 0.19
ACGTcount: A:0.07, C:0.21, G:0.53, T:0.19
Consensus pattern (5 bp):
GGTCG
Found at i:586958 original size:22 final size:22
Alignment explanation
Indices: 586915--586978 Score: 112
Period size: 22 Copynumber: 3.0 Consensus size: 22
586905 AACGGTCAAC
*
586915 GGTCAATGGTCGGGT-GGGTCG
1 GGTCAACGGTCGGGTCGGGTCG
586936 GGTCAACGGTCGGGTCGGGTCG
1 GGTCAACGGTCGGGTCGGGTCG
586958 GGTCAACGGTCGGGTCGGGTC
1 GGTCAACGGTCGGGTCGGGTC
586979 AGACCGGTCA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
21 14 0.34
22 27 0.66
ACGTcount: A:0.09, C:0.20, G:0.50, T:0.20
Consensus pattern (22 bp):
GGTCAACGGTCGGGTCGGGTCG
Found at i:587052 original size:19 final size:18
Alignment explanation
Indices: 586975--587053 Score: 79
Period size: 19 Copynumber: 4.2 Consensus size: 18
586965 GGTCGGGTCG
586975 GGTCAGACCGGTCAAACC
1 GGTCAGACCGGTCAAACC
*
586993 GATTCAGACCGGTCAAACC
1 G-GTCAGACCGGTCAAACC
*
587012 GGTTC-GAACCGGTTGAAACC
1 GG-TCAG-ACCGG-TCAAACC
*
587032 GGTCAAACCGGTCAGAACC
1 GGTCAGACCGGTCA-AACC
587051 GGT
1 GGT
587054 TGAAAACCGG
Statistics
Matches: 50, Mismatches: 5, Indels: 11
0.76 0.08 0.17
Matches are distributed among these distances:
18 4 0.08
19 38 0.76
20 8 0.16
ACGTcount: A:0.28, C:0.29, G:0.28, T:0.15
Consensus pattern (18 bp):
GGTCAGACCGGTCAAACC
Found at i:594244 original size:5 final size:5
Alignment explanation
Indices: 594234--594291 Score: 62
Period size: 5 Copynumber: 10.8 Consensus size: 5
594224 AACGGTCAAC
* *
594234 GGTCG GGTCG GGTCG GGTCAAC GGTCG GGTCG GGTCG GGTCAAC GGTCG
1 GGTCG GGTCG GGTCG GGTC--G GGTCG GGTCG GGTCG GGTC--G GGTCG
594283 GGTCG GGTC
1 GGTCG GGTC
594292 AGACCGGTCA
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
5 37 0.82
7 8 0.18
ACGTcount: A:0.07, C:0.22, G:0.52, T:0.19
Consensus pattern (5 bp):
GGTCG
Found at i:594252 original size:22 final size:22
Alignment explanation
Indices: 594227--594291 Score: 130
Period size: 22 Copynumber: 3.0 Consensus size: 22
594217 GAAAGTCAAC
594227 GGTCAACGGTCGGGTCGGGTCG
1 GGTCAACGGTCGGGTCGGGTCG
594249 GGTCAACGGTCGGGTCGGGTCG
1 GGTCAACGGTCGGGTCGGGTCG
594271 GGTCAACGGTCGGGTCGGGTC
1 GGTCAACGGTCGGGTCGGGTC
594292 AGACCGGTCA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 43 1.00
ACGTcount: A:0.09, C:0.23, G:0.49, T:0.18
Consensus pattern (22 bp):
GGTCAACGGTCGGGTCGGGTCG
Found at i:594306 original size:9 final size:9
Alignment explanation
Indices: 594288--594346 Score: 55
Period size: 9 Copynumber: 6.3 Consensus size: 9
594278 GGTCGGGTCG
*
594288 GGTCAGACC
1 GGTCAAACC
594297 GGTCAAACC
1 GGTCAAACC
* *
594306 GATTCAGACC
1 G-GTCAAACC
594316 GGTCAAACC
1 GGTCAAACC
*
594325 GGTTCGAACC
1 GG-TCAAACC
*
594335 GGTTAAACC
1 GGTCAAACC
594344 GGT
1 GGT
594347 TTCCAGCAGC
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
9 25 0.62
10 15 0.38
ACGTcount: A:0.27, C:0.29, G:0.27, T:0.17
Consensus pattern (9 bp):
GGTCAAACC
Found at i:594345 original size:19 final size:19
Alignment explanation
Indices: 594290--594347 Score: 82
Period size: 19 Copynumber: 3.1 Consensus size: 19
594280 TCGGGTCGGG
*
594290 TCAGACCGGTCAAACCGAT
1 TCAGACCGGTCAAACCGGT
594309 TCAGACCGGTCAAACCGGT
1 TCAGACCGGTCAAACCGGT
*
594328 TC-GAACCGGTTAAACCGGT
1 TCAG-ACCGGTCAAACCGGT
594347 T
1 T
594348 TCCAGCAGCC
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
18 1 0.03
19 35 0.97
ACGTcount: A:0.28, C:0.29, G:0.24, T:0.19
Consensus pattern (19 bp):
TCAGACCGGTCAAACCGGT
Found at i:597395 original size:732 final size:731
Alignment explanation
Indices: 595755--597210 Score: 2101
Period size: 732 Copynumber: 2.0 Consensus size: 731
595745 GAATATTTGT
* *
595755 AATATTAAATTCAGTTTTCTACTTTTCATAGTTTATTTAGGGTAATTTATGATCATTTTATTATT
1 AATATTAAATT-AGTTTTCTACTTTTAATAGTTTATTTAGGGTAATTTATGATCATTTTATTATC
** ** * * * * * ** ***
595820 TTAGAATTACTTTTCTTTT-ATTAACATATCTAGCATTAATGAAAAGATGTTAGCCTTTTTTCCT
65 TTAGAATTACTTAGCTTTTAAAAAAAATATATAGAATTAATAAAAAAATGTTAGCCTCATTAATT
* * * ***
595884 TTAGGGTTTTTTTGGGAGCCTATAAATAGACCCTCTTATTTTGTAATTAGGGGAAGAAAAGAAGA
130 TTA-CG-TTTATTAGGA-CCTATAAATAGACTAACTTATTTTGTAATTAGGGGAAGAAAAGAAGA
595949 AAAAAAGAGAAAGGAGAAGGAAGAAGGAAGAAGAGAAAAGAATCATCCATTGTAATTTGAAGAGC
192 AAAAAAGAGAAAGGAGAAGGAAGAAGG-AG-AGAGAAAAGAATCATCCATTGTAATTTGAAGAGC
596014 AAGAGCAATAAAAGTGAGTTTTTTTTCATTGTTATTTTTTTTATTGTCTTTATTGTTTCGATCGA
255 AAGAGCAATAAAAGTGAGTTTTTTTTCATTGTTATTTTTTTTATTGTCTTTATTGTTTCGATCGA
596079 CTTCGTTATTTTTTCCTTAAAAAAACTATTTCGGATGAGAGAAAACTGATGAACAAAGAAAATAC
320 CTTCGTTATTTTTTCCTTAAAAAAACTATTTCGGATGAGAGAAAACTGATGAACAAAGAAAATAC
*
596144 TCCTAAATAGAATTTTGTAAATCTAACATTCCTTGATGTTTCTCCGTGAAAACCGATGATTTTCT
385 TCCTAAATA-AATTTTGTAAATCTAACATTCCTTGATGTTTCTCCATGAAAACCGATGATTTTCT
* *
596209 TTTTATATATATTTTTTATTATTTTTTTATTTATTGTTTCGACATTGATTTTGTTTGAAAATTCC
449 TTTTATATATATTTTTTATTATTTTTGTATTTATTATTTCGACATTGATTTTGTTTGAAAATTCC
* * * *
596274 ATCGAATGAGAGAACCAATGAATAAGATAAATGCTTTTAATTAGTTTTTCATAAATCAAGTCTTC
514 ATCGAATGAGAGAACCAATGAATAAGAAAAAGGCCTTTAATTAGATTTTCATAAATCAAGTCTTC
596339 CTTGAGGTTTCTCAATGAAATTGGTGGTGGATTTTGAATTAAAAGTTTATTATTTATTTATTTAT
579 CTTGAGGTTTCTCAATGAAATTGGTGGTGGATTTTGAATTAAAAGTTTATTATTTATTTATTTAT
*
596404 CTTGATTTAATTTCACATTTTTTTATTTAAATGACCAAATGACACAATTTAAATCCCTATTAAAT
644 CTTGATTTAATTTCACA-TTTTTTATTTAAATGACCAAATAACACAATTTAAATCCCTATTAAAT
* ****
596469 CCATATATTTTATTGAATATTTTT
708 CCATATATTTTATTGAAGATAGGA
* *
596493 AATATTAAATTCAGTTTTCTACTTTTCATAGTTTATTTAGGGTAATTTATGATCATTTTATTATT
1 AATATTAAATT-AGTTTTCTACTTTTAATAGTTTATTTAGGGTAATTTATGATCATTTTATTATC
** ** * * * * * ** *
596558 TTAGAATTACTTTTCTTTTAATTAACATATCTAGCATTAATGAAAATATGTTAGCCTTTTTTATT
65 TTAGAATTACTTAGCTTTTAAAAAAAATATATAGAATTAATAAAAAAATGTTAGCCTCATTAATT
* * ** *
596623 TTACGGTTTTTTGGGAGCCTATAAATAGACTCTCTTATTTTGTAATTAGGGGGAGAAAAG-A-AA
130 TTAC-GTTTATTAGGA-CCTATAAATAGACTAACTTATTTTGTAATTAGGGGAAGAAAAGAAGAA
*
596686 AAAAAGAGAAA-G-G-AGGAGGAAGG-G-GAGAAAAGAATCATCCATTGTAATTTGAAGAGCAAG
193 AAAAAGAGAAAGGAGAAGGAAGAAGGAGAGAGAAAAGAATCATCCATTGTAATTTGAAGAGCAAG
596746 AGCAATAAAAGTGAG-TTTTTTTCATTGTTATATTTTTTATTATTGTCTTTATTGTTTCGATCGA
258 AGCAATAAAAGTGAGTTTTTTTTCATTG-T-TATTTTTT-TTATTGTCTTTATTGTTTCGATCGA
* * *
596810 CTTTGTTCTTTTTTCCTTAAAAAAACTATTTCGGATGAGAGAAAATTGATGAACAAAGAAAATAC
320 CTTCGTTATTTTTTCCTTAAAAAAACTATTTCGGATGAGAGAAAACTGATGAACAAAGAAAATAC
596875 TCCTAAAT-AATTTTCGTAAATCTAACATTCCTTGATGTTTCTCCATGAAAACCGATGATTTTCT
385 TCCTAAATAAATTTT-GTAAATCTAACATTCCTTGATGTTTCTCCATGAAAACCGATGATTTTCT
*
596939 TTTTATATATATATTTTTATTATTATTTGTATTTTTTATTTCGACATTGATTTTGTTTGAAAATT
449 TTTTATATATAT-TTTTTATTATT-TTTGTATTTATTATTTCGACATTGATTTTGTTTGAAAATT
597004 CCATCGAATGAGAGAACCAATGAATAAGAAAAAGGCCTTTAATTAGATTTTCATAAATCAA-TCA
512 CCATCGAATGAGAGAACCAATGAATAAGAAAAAGGCCTTTAATTAGATTTTCATAAATCAAGTC-
597068 TTCCTTGAGGTTTCTCAATGAAATTGGTGGTGGATTTTGAATTAAAAGTTTATTATTTATTTATT
576 TTCCTTGAGGTTTCTCAATGAAATTGGTGGTGGATTTTGAATTAAAAGTTTATTATTTATTTATT
***
597133 TATCTTGATTTAATTTCA-A-TTTTTATTTAAATGATTGAATAACACAATTTAAATCCCTATTAA
641 TATCTTGATTTAATTTCACATTTTTTATTTAAATGACCAAATAACACAATTTAAATCCCTATTAA
597196 ATCCATATATTTTAT
706 ATCCATATATTTTAT
597211 ACAGGTAGGA
Statistics
Matches: 687, Mismatches: 22, Indels: 27
0.93 0.03 0.04
Matches are distributed among these distances:
728 12 0.02
729 113 0.16
730 68 0.10
731 110 0.16
732 177 0.26
733 9 0.01
734 1 0.00
735 1 0.00
736 13 0.02
737 1 0.00
738 136 0.20
739 46 0.07
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.42
Consensus pattern (731 bp):
AATATTAAATTAGTTTTCTACTTTTAATAGTTTATTTAGGGTAATTTATGATCATTTTATTATCT
TAGAATTACTTAGCTTTTAAAAAAAATATATAGAATTAATAAAAAAATGTTAGCCTCATTAATTT
TACGTTTATTAGGACCTATAAATAGACTAACTTATTTTGTAATTAGGGGAAGAAAAGAAGAAAAA
AAGAGAAAGGAGAAGGAAGAAGGAGAGAGAAAAGAATCATCCATTGTAATTTGAAGAGCAAGAGC
AATAAAAGTGAGTTTTTTTTCATTGTTATTTTTTTTATTGTCTTTATTGTTTCGATCGACTTCGT
TATTTTTTCCTTAAAAAAACTATTTCGGATGAGAGAAAACTGATGAACAAAGAAAATACTCCTAA
ATAAATTTTGTAAATCTAACATTCCTTGATGTTTCTCCATGAAAACCGATGATTTTCTTTTTATA
TATATTTTTTATTATTTTTGTATTTATTATTTCGACATTGATTTTGTTTGAAAATTCCATCGAAT
GAGAGAACCAATGAATAAGAAAAAGGCCTTTAATTAGATTTTCATAAATCAAGTCTTCCTTGAGG
TTTCTCAATGAAATTGGTGGTGGATTTTGAATTAAAAGTTTATTATTTATTTATTTATCTTGATT
TAATTTCACATTTTTTATTTAAATGACCAAATAACACAATTTAAATCCCTATTAAATCCATATAT
TTTATTGAAGATAGGA
Found at i:605138 original size:256 final size:255
Alignment explanation
Indices: 604802--605271 Score: 710
Period size: 256 Copynumber: 1.8 Consensus size: 255
604792 TCAACAACGA
* *
604802 GGAGCTATTTTTCAACCAAAGTCTTCAAGTCAAATTTCAACTTCACGACGAAGGATATTGGACTA
1 GGAGCTATTTTTCAACCAAAGTCTTCAAGTCAAATTTCAAATTCACGACAAAGGATATTGGACTA
* * * *
604867 GAATAAGACCCAAAATCAATTATGATTTAGCTTAACTCAACAACAA-TGAGATACTTTCTATTTC
66 CAAGAAGACCCAAAATCAATTATGATTTAGCTTAACTCAACAACAAGT-AGATACTTTCCA-ATC
* * *
604931 AAATTTCGAGCTTGATTTCAACTTCATGACAAAGGATATCATGCTCAAATCACCCAAGATCAACT
129 AAATTTCAAGCTAGATTTCAACTTCACGACAAAGGATATCATGCTCAAATCACCCAAGATCAACT
604996 CAACTTCACAACCAAAGAGTCGGCCACGATTTTAAATTCATGATGAAAGATATCTTGCTTAG
194 CAACTTCACAACCAAAGAGTCGGCCACGATTTTAAATTCATGATGAAAGATATCTTGCTTAG
* *
605058 GGAGCTA-TTTTCAAACCAAGGTCTTCAAGTCAAATTTCAAATTCATGACAAAGGATATTGGACT
1 GGAGCTATTTTTC-AACCAAAGTCTTCAAGTCAAATTTCAAATTCACGACAAAGGATATTGGACT
* *
605122 ACAAGAAGACCCAAAATCAATTGTGATTTAGCTTAACTCAACAACAAGTAGTTACTTTCCAATCA
65 ACAAGAAGACCCAAAATCAATTATGATTTAGCTTAACTCAACAACAAGTAGATACTTTCCAATCA
* ** * * *
605187 ATTTTCAAGCTAGATTTCAACTTCACGATGAAGGATATCATGCTCAAGTCATCCAAGATCGACTC
130 AATTTCAAGCTAGATTTCAACTTCACGACAAAGGATATCATGCTCAAATCACCCAAGATCAACTC
* *
605252 AACTTCACAACGAATGAGTC
195 AACTTCACAACCAAAGAGTC
605272 ATCCATGATT
Statistics
Matches: 191, Mismatches: 21, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
255 82 0.43
256 108 0.57
257 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.14, T:0.28
Consensus pattern (255 bp):
GGAGCTATTTTTCAACCAAAGTCTTCAAGTCAAATTTCAAATTCACGACAAAGGATATTGGACTA
CAAGAAGACCCAAAATCAATTATGATTTAGCTTAACTCAACAACAAGTAGATACTTTCCAATCAA
ATTTCAAGCTAGATTTCAACTTCACGACAAAGGATATCATGCTCAAATCACCCAAGATCAACTCA
ACTTCACAACCAAAGAGTCGGCCACGATTTTAAATTCATGATGAAAGATATCTTGCTTAG
Found at i:605330 original size:79 final size:79
Alignment explanation
Indices: 605199--605499 Score: 478
Period size: 79 Copynumber: 3.8 Consensus size: 79
605189 TTTCAAGCTA
* *
605199 GATTTCAACTTCACGATGAAGGATATCATGCTCAAGTCATCCAAGATCGACTCAACTTCACAACG
1 GATTTCAACTTCACGACGAAGGATATCATGCTCAAGTCATCCAAGATCGACTCAACTTCACGACG
605264 AATGAGTCATCCAT
66 AATGAGTCATCCAT
* * * *
605278 GATTTCAACTTCACAATGAAGGATA-CTATGCTCAAGTTATCCAAGATCGACTCAACTTCACGAT
1 GATTTCAACTTCACGACGAAGGATATC-ATGCTCAAGTCATCCAAGATCGACTCAACTTCACGAC
605342 GAATGAGTCATCCAT
65 GAATGAGTCATCCAT
* * * *
605357 GATTTTAACTTCACGACGAAGGATATCATGCTCAATTTATCCAAGATCGACTCAACTTCCCGACG
1 GATTTCAACTTCACGACGAAGGATATCATGCTCAAGTCATCCAAGATCGACTCAACTTCACGACG
605422 AATGAGTCATCCAT
66 AATGAGTCATCCAT
* *
605436 GATTTCAACTTCACGACGAAGGATATCATGCTTAAGTCATCAAAGATCGACTCAACTTCACGAC
1 GATTTCAACTTCACGACGAAGGATATCATGCTCAAGTCATCCAAGATCGACTCAACTTCACGAC
605500 TAGGAGTCAA
Statistics
Matches: 204, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
78 1 0.00
79 202 0.99
80 1 0.00
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.27
Consensus pattern (79 bp):
GATTTCAACTTCACGACGAAGGATATCATGCTCAAGTCATCCAAGATCGACTCAACTTCACGACG
AATGAGTCATCCAT
Found at i:606834 original size:21 final size:22
Alignment explanation
Indices: 606805--606849 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
606795 AAGTGAAAAC
* *
606805 ATATGCTTTTCTT-TTTTATGT
1 ATATACTTTTATTATTTTATGT
*
606826 ATATACTTTTATTATTTTTTGT
1 ATATACTTTTATTATTTTATGT
606848 AT
1 AT
606850 TTATTGCTTC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.20, C:0.07, G:0.07, T:0.67
Consensus pattern (22 bp):
ATATACTTTTATTATTTTATGT
Found at i:611647 original size:67 final size:67
Alignment explanation
Indices: 611516--611648 Score: 212
Period size: 67 Copynumber: 2.0 Consensus size: 67
611506 CTTGATGTTC
**
611516 AAACTTGATAAGAGTTTAGGTGCATCGAGGCTTCTAAGTGTTTAACCTAAGGATAGTTTGTTATT
1 AAACTTGATAAGAGTTTAGGTGCATCGAGGCTTCTAAGTGTTTAACCTAAGGATAGTTCATTATT
611581 CA
66 CA
* * * *
611583 AAACTTGATAAGAGTTTAGGTGTATCGATGCTTTTAAGTGTTTGACCTAAGGATAGTTCATTATT
1 AAACTTGATAAGAGTTTAGGTGCATCGAGGCTTCTAAGTGTTTAACCTAAGGATAGTTCATTATT
611648 C
66 C
611649 GATCCAAGTA
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
67 60 1.00
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.38
Consensus pattern (67 bp):
AAACTTGATAAGAGTTTAGGTGCATCGAGGCTTCTAAGTGTTTAACCTAAGGATAGTTCATTATT
CA
Found at i:613136 original size:47 final size:47
Alignment explanation
Indices: 613046--613136 Score: 119
Period size: 47 Copynumber: 1.9 Consensus size: 47
613036 CGAGTTATAT
* * * *
613046 TGGTGTGTGACGAGGCTACCTCAGTTACCTTAGTGGGGTATTGTTAG
1 TGGTGTGTAACGAGGCTACCTCAGTTACCCTAGTAGGGCATTGTTAG
* * *
613093 TGGTGTGTAACTAGGCTACCTCAGTTGCCCTCGTAGGGCATTGT
1 TGGTGTGTAACGAGGCTACCTCAGTTACCCTAGTAGGGCATTGT
613137 CACTGTTTTG
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 37 1.00
ACGTcount: A:0.16, C:0.19, G:0.32, T:0.33
Consensus pattern (47 bp):
TGGTGTGTAACGAGGCTACCTCAGTTACCCTAGTAGGGCATTGTTAG
Found at i:615322 original size:12 final size:11
Alignment explanation
Indices: 615294--615335 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
615284 CCCGTGAATC
615294 AAATTTCTATT-
1 AAATTT-TATTA
615305 AAATTTTATTAA
1 AAATTTTATT-A
*
615317 AAATTTGATTA
1 AAATTTTATTA
615328 AAATTTTA
1 AAATTTTA
615336 ATAACCCAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
10 4 0.15
11 14 0.52
12 9 0.33
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (11 bp):
AAATTTTATTA
Found at i:622903 original size:32 final size:30
Alignment explanation
Indices: 622860--622931 Score: 89
Period size: 26 Copynumber: 2.4 Consensus size: 30
622850 GAGTCGAGTA
622860 TAGCTCGACTCGAACTCGAAAACTTTAAATG
1 TAGCT-GACTCGAACTCGAAAACTTTAAATG
622891 TAG--G-CTCG-ACTCGAAAACTTTAAATG
1 TAGCTGACTCGAACTCGAAAACTTTAAATG
622917 TAGGCTTGACTCGAA
1 TA-GC-TGACTCGAA
622932 AACTCGCGAG
Statistics
Matches: 35, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
26 20 0.57
27 5 0.14
28 1 0.03
30 1 0.03
31 7 0.20
32 1 0.03
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.26
Consensus pattern (30 bp):
TAGCTGACTCGAACTCGAAAACTTTAAATG
Found at i:622905 original size:26 final size:26
Alignment explanation
Indices: 622868--622935 Score: 118
Period size: 26 Copynumber: 2.6 Consensus size: 26
622858 TATAGCTCGA
622868 CTCGAACTCGAAAACTTTAAATGTAGG
1 CTCG-ACTCGAAAACTTTAAATGTAGG
622895 CTCGACTCGAAAACTTTAAATGTAGG
1 CTCGACTCGAAAACTTTAAATGTAGG
*
622921 CTTGACTCGAAAACT
1 CTCGACTCGAAAACT
622936 CGCGAGCCTA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
26 36 0.90
27 4 0.10
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (26 bp):
CTCGACTCGAAAACTTTAAATGTAGG
Found at i:623061 original size:24 final size:23
Alignment explanation
Indices: 623032--623077 Score: 83
Period size: 24 Copynumber: 2.0 Consensus size: 23
623022 AAAATTCAGG
623032 AGCTCGATTGAAGCTCGAGACTCA
1 AGCTCGATTGAAGCTCGA-ACTCA
623056 AGCTCGATTGAAGCTCGAACTC
1 AGCTCGATTGAAGCTCGAACTC
623078 GATTCAAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 4 0.18
24 18 0.82
ACGTcount: A:0.28, C:0.26, G:0.24, T:0.22
Consensus pattern (23 bp):
AGCTCGATTGAAGCTCGAACTCA
Found at i:623080 original size:17 final size:17
Alignment explanation
Indices: 623058--623094 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
623048 GAGACTCAAG
*
623058 CTCGATTGAAGCTCGAA
1 CTCGATTCAAGCTCGAA
623075 CTCGATTCAAGCTCGAA
1 CTCGATTCAAGCTCGAA
623092 CTC
1 CTC
623095 AAGCTCTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (17 bp):
CTCGATTCAAGCTCGAA
Found at i:623195 original size:26 final size:26
Alignment explanation
Indices: 623133--623198 Score: 123
Period size: 26 Copynumber: 2.5 Consensus size: 26
623123 AGGATTCATC
*
623133 AAAATTAGTAAAACCTTCTTATAAAA
1 AAAATTAGTAGAACCTTCTTATAAAA
623159 AAAATTAGTAGAACCTTCTTATAAAA
1 AAAATTAGTAGAACCTTCTTATAAAA
623185 AAAATTAGTAGAAC
1 AAAATTAGTAGAAC
623199 TACAATAATC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.53, C:0.11, G:0.08, T:0.29
Consensus pattern (26 bp):
AAAATTAGTAGAACCTTCTTATAAAA
Found at i:634960 original size:17 final size:17
Alignment explanation
Indices: 634938--634970 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
634928 TTAGTGTTCC
634938 TTCAATT-TGTGCTTGTT
1 TTCAATTGTGT-CTTGTT
634955 TTCAATTGTGTCTTGT
1 TTCAATTGTGTCTTGT
634971 AATTTTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.12, C:0.12, G:0.18, T:0.58
Consensus pattern (17 bp):
TTCAATTGTGTCTTGTT
Found at i:635272 original size:7 final size:7
Alignment explanation
Indices: 635260--635426 Score: 142
Period size: 7 Copynumber: 24.3 Consensus size: 7
635250 ATGTATAACT
*
635260 TAAACCA
1 TAAACCC
*
635267 TAAACCA
1 TAAACCC
635274 TAAACCC
1 TAAACCC
*
635281 TAAATCC
1 TAAACCC
**
635288 TAAACTA
1 TAAACCC
*
635295 TAAACCA
1 TAAACCC
635302 TAAACCC
1 TAAACCC
*
635309 TTAA-CC
1 TAAACCC
635315 T-AACCC
1 TAAACCC
*
635321 TTAACCC
1 TAAACCC
*
635328 TTAACCC
1 TAAACCC
*
635335 TAAACTC
1 TAAACCC
*
635342 TAAACTC
1 TAAACCC
*
635349 TAAACCT
1 TAAACCC
* * *
635356 TTAATCT
1 TAAACCC
**
635363 TAAACTA
1 TAAACCC
635370 TAAACCC
1 TAAACCC
635377 TAAACCC
1 TAAACCC
635384 TAAACCC
1 TAAACCC
635391 TAAACCC
1 TAAACCC
635398 TAAA-CC
1 TAAACCC
* *
635404 TTAACAC
1 TAAACCC
635411 TAAACCC
1 TAAACCC
635418 TAAACCC
1 TAAACCC
635425 TA
1 TA
635427 TCACATAATT
Statistics
Matches: 133, Mismatches: 24, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
5 2 0.02
6 11 0.08
7 120 0.90
ACGTcount: A:0.44, C:0.34, G:0.00, T:0.23
Consensus pattern (7 bp):
TAAACCC
Found at i:635523 original size:14 final size:14
Alignment explanation
Indices: 635504--635533 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
635494 TATAATTATC
*
635504 AATAATGTATTTTT
1 AATAATGTAATTTT
635518 AATAATGTAATTTT
1 AATAATGTAATTTT
635532 AA
1 AA
635534 AAAATCTAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (14 bp):
AATAATGTAATTTT
Found at i:636762 original size:21 final size:23
Alignment explanation
Indices: 636736--636787 Score: 72
Period size: 21 Copynumber: 2.3 Consensus size: 23
636726 GGTCACTAGT
*
636736 ATAATTTACCTTT-TA-TTTTAA
1 ATAATTTACCTTTAAATTTTTAA
636757 ATAATTTACCTTTAAATTTTTAA
1 ATAATTTACCTTTAAATTTTTAA
*
636780 CTAATTTA
1 ATAATTTA
636788 TAATTATACG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 13 0.48
22 1 0.04
23 13 0.48
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.54
Consensus pattern (23 bp):
ATAATTTACCTTTAAATTTTTAA
Found at i:637509 original size:199 final size:199
Alignment explanation
Indices: 637188--637622 Score: 470
Period size: 199 Copynumber: 2.2 Consensus size: 199
637178 TTTTTTTTTG
* * * *
637188 TAATTTATAAGATTAGA-GCATAGTATTGGAATTTATCTTTTAGTTAAGGAAAATATCGACACAT
1 TAATTTATAAGATTAGAGGCATTGTATTGGTACTTATCTTTTAGTTAAGGAAAATATCAACACAT
* * * * * *
637252 ACGAGATATTGTAAGCGTGTTAAAAATCGCTTTGAAAAAGGTTCCAAAGTTTGTTTTGTACATTA
66 ACGAGATATTGTAAGCGTGGTAAAAAACGCGTTCAAAAAGGTTCCAAAGTTGGTTTTGTACATGA
* * *
637317 AGAAAAAG-CTAAAATGGTTTGAGAGGTATATTCGCGCGAG-GGTTCGGGTAGTTAATCTGAAAA
131 AG-AAAAGTCTAAAATGGCTTGAGAGGCATATTCG-GCGAGAGGTTCGGGAAGTTAATCTGAAAA
637380 TTTTCA
194 TTTTCA
* * *
637386 TAATTTATAAGATTAGAGGCATTGTATTGGTACTTATTTTTTAGTTGAGGATAATA-CAAGCACA
1 TAATTTATAAGATTAGAGGCATTGTATTGGTACTTATCTTTTAGTTAAGGAAAATATCAA-CACA
* * * *
637450 TATGAGATATT-TAAG-TTGGGTAAAAAACGCGTTCAAAATGGTTCCAAAGCTTGGTTTTGTGCA
65 TACGAGATATTGTAAGCGT-GGTAAAAAACGCGTTCAAAAAGGTTCCAAAG-TTGGTTTTGTACA
* ** * * * ** * *
637513 TGAAGAATAGTCTAGCATGGCTTGATAGGCATGTTCGGGGAGTATTTTCGGGAATTTAATTTGAA
128 TGAAGAAAAGTCTAAAATGGCTTGAGAGGCATATTCGGCGAG-AGGTTCGGGAAGTTAATCTGAA
*
637578 AATTTTCG
192 AATTTTCA
*
637586 TAATTTATAAGATTATAGGCATAT-TATTGGTACTTAT
1 TAATTTATAAGATTAGAGGCAT-TGTATTGGTACTTAT
637623 GTTTCAATTG
Statistics
Matches: 197, Mismatches: 32, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
197 1 0.01
198 57 0.29
199 81 0.41
200 57 0.29
201 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.22, T:0.36
Consensus pattern (199 bp):
TAATTTATAAGATTAGAGGCATTGTATTGGTACTTATCTTTTAGTTAAGGAAAATATCAACACAT
ACGAGATATTGTAAGCGTGGTAAAAAACGCGTTCAAAAAGGTTCCAAAGTTGGTTTTGTACATGA
AGAAAAGTCTAAAATGGCTTGAGAGGCATATTCGGCGAGAGGTTCGGGAAGTTAATCTGAAAATT
TTCA
Found at i:640474 original size:65 final size:63
Alignment explanation
Indices: 640355--640564 Score: 221
Period size: 65 Copynumber: 3.3 Consensus size: 63
640345 TTTTCCAGAG
* * *
640355 TGATGCACCGATGCACCAATCCATGCATCGATGCAC-CATGA-ATTAAATTG-AACATCGAATGC
1 TGATGCATCGATGCA-CAA-CCATGCACCGATGCACTCAGGATATT---TTGAAACATCGAATGC
640417 ATT
61 ATT
* *
640420 TCATGCATCGATGCACATACCATGCACCGATGCACTGAGGAT-TTTATGAAAACATCGAATGCAT
1 TGATGCATCGATGCACA-ACCATGCACCGATGCACTCAGGATATTT-TG-AAACATCGAATGCAT
640484 T
63 T
* * * * *
640485 TGATGCATCGATGCACCAGCCATGCATCGATGCACTCTGGCTATTTTGAAACATCGAATGCACT
1 TGATGCATCGATGCA-CAACCATGCACCGATGCACTCAGGATATTTTGAAACATCGAATGCATT
640549 TGATGCATCGATGCAC
1 TGATGCATCGATGCAC
640565 TCTTAGTGCA
Statistics
Matches: 125, Mismatches: 12, Indels: 18
0.81 0.08 0.12
Matches are distributed among these distances:
62 1 0.01
63 3 0.02
64 47 0.38
65 69 0.55
66 5 0.04
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (63 bp):
TGATGCATCGATGCACAACCATGCACCGATGCACTCAGGATATTTTGAAACATCGAATGCATT
Found at i:640582 original size:129 final size:130
Alignment explanation
Indices: 640355--640590 Score: 302
Period size: 129 Copynumber: 1.8 Consensus size: 130
640345 TTTTCCAGAG
* * *
640355 TGATGCACCGATGCACCAATCCATGCATCGATGCACCATGAATTAAATTGAACATCGAATGCATT
1 TGATGCACCGATGCACCAAGCCATGCATCGATGCACCATGAACTAAATTGAACATCGAATGCACT
* *
640420 TCATGCATCGATGCACATACCATGCACCGATGCACTGAGGATTTTATGAAAACATCGAATGCATT
66 TCATGCATCGATGCACATACCATGCACCAATGCACTAAGGATTTTATGAAAACATCGAATGCATT
* * **
640485 TGATGCATCGATGCACC-AGCCATGCATCGATGCACTC-TG-GCTATTTTGAAACATCGAATGCA
1 TGATGCACCGATGCACCAAGCCATGCATCGATGCAC-CATGAACTAAATTG-AACATCGAATGCA
* *
640547 CTTGATGCATCGATGCAC-T-CTTAGTGCACCAATGCACTAAGGAT
64 CTTCATGCATCGATGCACATAC-CA-TGCACCAATGCACTAAGGAT
640591 CCAACGATCA
Statistics
Matches: 91, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
127 1 0.01
128 7 0.08
129 66 0.73
130 17 0.19
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.26
Consensus pattern (130 bp):
TGATGCACCGATGCACCAAGCCATGCATCGATGCACCATGAACTAAATTGAACATCGAATGCACT
TCATGCATCGATGCACATACCATGCACCAATGCACTAAGGATTTTATGAAAACATCGAATGCATT
Found at i:643478 original size:17 final size:17
Alignment explanation
Indices: 643444--643495 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 17
643434 ACCGGACAAA
* *
643444 TTTATTATTTTAGAGAG
1 TTTATTAATTTACAGAG
*
643461 TTTATTAATTTACCGAG
1 TTTATTAATTTACAGAG
*
643478 --TATTAATTTAAAGAG
1 TTTATTAATTTACAGAG
643493 TTT
1 TTT
643496 CTATTGTACC
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
15 13 0.46
17 15 0.54
ACGTcount: A:0.33, C:0.04, G:0.13, T:0.50
Consensus pattern (17 bp):
TTTATTAATTTACAGAG
Found at i:646907 original size:44 final size:44
Alignment explanation
Indices: 646842--646962 Score: 215
Period size: 44 Copynumber: 2.7 Consensus size: 44
646832 CACTTAATAG
* *
646842 TGCATCGATGCATCCCTTTGAATGTGCATCGATTCATTTTGCTGA
1 TGCACCGATGCATTCC-TTGAATGTGCATCGATTCATTTTGCTGA
646887 TGCACCGATGCATTCCTTGAATGTGCATCGATTCATTTTGCTGA
1 TGCACCGATGCATTCCTTGAATGTGCATCGATTCATTTTGCTGA
646931 TGCACCGATGCATTCCTTGAATGTGCATCGAT
1 TGCACCGATGCATTCCTTGAATGTGCATCGAT
646963 GCACAGGGCC
Statistics
Matches: 74, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
44 60 0.81
45 14 0.19
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.36
Consensus pattern (44 bp):
TGCACCGATGCATTCCTTGAATGTGCATCGATTCATTTTGCTGA
Found at i:646918 original size:23 final size:23
Alignment explanation
Indices: 646841--646965 Score: 118
Period size: 21 Copynumber: 5.6 Consensus size: 23
646831 ACACTTAATA
*
646841 GTGCATCGATGCATCCCTTTGAAT
1 GTGCATCGATGCATTCC-TTGAAT
* *
646865 GTGCATCGATTCATT--TTG-CT
1 GTGCATCGATGCATTCCTTGAAT
*
646885 GATGCACCGATGCATTCCTTGAAT
1 G-TGCATCGATGCATTCCTTGAAT
* *
646909 GTGCATCGATTCATT--TTG-CT
1 GTGCATCGATGCATTCCTTGAAT
*
646929 GATGCACCGATGCATTCCTTGAAT
1 G-TGCATCGATGCATTCCTTGAAT
646953 GTGCATCGATGCA
1 GTGCATCGATGCA
646966 CAGGGCCATG
Statistics
Matches: 80, Mismatches: 13, Indels: 17
0.73 0.12 0.15
Matches are distributed among these distances:
20 4 0.05
21 30 0.38
23 29 0.36
24 17 0.21
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.34
Consensus pattern (23 bp):
GTGCATCGATGCATTCCTTGAAT
Found at i:648884 original size:984 final size:987
Alignment explanation
Indices: 646974--648943 Score: 3885
Period size: 984 Copynumber: 2.0 Consensus size: 987
646964 CACAGGGCCA
646974 TGCATCGATGCATCCGTCGAGTTTTGGGTTAAAATGCATGATTTTCTTCATTTTTTCATACCCTA
1 TGCATCGATGCATCCGTCGAGTTTTGGGTTAAAATGCATGATTTTCTTCATTTTTTCATACCCTA
*
647039 AACCTAAAAACTCTCCCGTCGTTCGTCCCTCTCTAACACTAAATCCTTCTCTTACTCAAAATCAT
66 AACCTAAAAACTCTCCCATCGTTCGTCCCTCTCTAACACTAAATCCTTCTCTTACTCAAAATCAT
647104 CGGAAAATCATCGGTTTCTTCGTGCTTTTCATCTTCAAAATCTGCTTATATCATTAAATCATGCA
131 CGGAAAATCATCGGTTTCTTCGTGCTTTTCATCTTCAAAATCTGCTTATATCATTAAATCATGCA
647169 AAACAACTCCGCATCCCTCTCAATCCGAATTTTCAAGGTAATATTTCAAAAACCTCTATTTTATT
196 AAACAACTCCGCATCCCTCTCAATCCGAATTTTCAAGGTAATATTTCAAAAACCTCTATTTTATT
647234 GATTTTTGATTTTAGAACTAGTTTTGATTAGTTCTAGGATGAACATTATATCGGGCATTGATTGT
261 GATTTTTGATTTTAGAACTAGTTTTGATTAGTTCTAGGATGAACATTATATCGGGCATTGATTGT
647299 TTGTTGGTTCTAAACTAGATTTTACTACCAATTTCGTCAAAAATAAACAAATTTTCAAGATTTTT
326 TTGTTGGTTCTAAACTAGATTTTACTACCAATTTCGTCAAAAATAAACAAATTTTCAAGATTTTT
647364 CTTTAAATTTCGAACTTAAAATATATATATATAATTTTAAAAATTAGTAATATTTTTGATTTAAT
391 CTTTAAATTTCGAACTTAAAATATATATATATAATTTTAAAAATTAGTAATATTTTTGATTTAAT
647429 TGTGTTGTTTTCATGAAAACTATATTATGATTAAATAGTTTTCAAAACATGCCCATTAGGATATG
456 TGTGTTGTTTTCATGAAAACTATATTATGATTAAATAGTTTTCAAAACATGCCCATTAGGATATG
647494 GTTTAGAGAACCTTGAATTATTGAGGACTCATTTGAGTTTTGGAATTGATTGTGCATACATGTGT
521 GTTTAGAGAACCTTGAATTATTGAGGACTCATTTGAGTTTTGGAATTGATTGTGCATACATGTGT
647559 TTCAAATTGAACGTGATATTCCTTATTCCAATTTCCTTTAATCATGTCAAATCCTAAACGACCTA
586 TTCAAATTGAACGTGATATTCCTTATTCCAATTTCCTTTAATCATGTCAAATCCTAAACGACCTA
647624 GGTCATCTTTGAGTCGGTCAAACCAAAACCGTCCTCCCGTTCCTCAACCTCCTAATCCCGTTCCT
651 GGTCATCTTTGAGTCGGTCAAACCAAAACCGTCCTCCCGTTCCTCAACCTCCTAATCCCGTTCCT
647689 CCTCCACCTTCATCTCTATTAGGATCTTGTTTTAACATGCCTGAGCGTCGTAGAGATGAATTGTA
716 CCTCCACCTTCATCTCTATTAGGATCTTGTTTTAACATGCCTGAGCGTCGTAGAGATGAATTGTA
647754 CTCTAGGTACAGAAACTCTTTCCAAACTTATAGAATCCGTGAAGAGCGTATTCCTTTGCTTCAAG
781 CTCTAGGTACAGAAACTCTTTCCAAACTTATAGAATCCGTGAAGAGCGTATTCCTTTGCTTCAAG
647819 CTATGGTTGACATTGATTTCGAATACCTTCTAATTCTTAAAGCTTGGAAGTTTGATAAATTGCTT
846 CTATGGTTGACATTGATTTCGAATACCTTCTAATTCTTAAAGCTTGGAAGTTTGATAAATTGCTT
*
647884 AAGCTTAAACCTATCGTCTATCAACAATTGGTCCGCATTTTCTATTCCAATGCGGTGTGTATTCA
911 AACCTTAAACCTATCGTCTATCAACAATTGGTCCGCATTTTCTATTCCAATGCGGTGTGTATTCA
647949 AAATGAAACTCG
976 AAATGAAACTCG
647961 TGCATCGATGCATCCGTCGAGTTTTGGGTTAAAATGCATGATTTTCTTCATTTTTTCATACCCTA
1 TGCATCGATGCATCCGTCGAGTTTTGGGTTAAAATGCATGATTTTCTTCATTTTTTCATACCCTA
648026 AACCTAAAAACTCTCCCATCGTTCGTCCCTCTCTAACACTAAATCCTTCTCTTACTCAAAATCAT
66 AACCTAAAAACTCTCCCATCGTTCGTCCCTCTCTAACACTAAATCCTTCTCTTACTCAAAATCAT
648091 CGGAAAATCATCGGTTTCTTCGTGCTTTTCATCTTCAAAATCTGCTTATATCATTAAATCATGCA
131 CGGAAAATCATCGGTTTCTTCGTGCTTTTCATCTTCAAAATCTGCTTATATCATTAAATCATGCA
648156 AAACAACTCCGCATCCCTCTCAATCCGAATTTTCAAGGTAATATTTC-AAAACCTCTATTTTATT
196 AAACAACTCCGCATCCCTCTCAATCCGAATTTTCAAGGTAATATTTCAAAAACCTCTATTTTATT
648220 GATTTTTGATTTTAGAACTAG-TTTGATTAGTTCTAGGATGAACA-TATATCGGGCATTGATTGT
261 GATTTTTGATTTTAGAACTAGTTTTGATTAGTTCTAGGATGAACATTATATCGGGCATTGATTGT
648283 TTGTTGGTTCTAAAACTAGA-TTTACTACCAATTTCGTCAAAAATAAACAAATTTTCAAGATTTT
326 TTGTTGGTTCT-AAACTAGATTTTACTACCAATTTCGTCAAAAATAAACAAATTTTCAAGATTTT
648347 TCTTTAAATTTCGAACTTAAAATATATATATATAATTTTAAAAATTAGTAATATTTTTGATTTAA
390 TCTTTAAATTTCGAACTTAAAATATATATATATAATTTTAAAAATTAGTAATATTTTTGATTTAA
648412 TTGTGTTGTTTTCATGAAAACTATATTATGATTAAATAGTTTTCAAAACATGCCCATTAGGATAT
455 TTGTGTTGTTTTCATGAAAACTATATTATGATTAAATAGTTTTCAAAACATGCCCATTAGGATAT
648477 GGTTTAGAGAACCTTGAATTATTGAGGACTCATTTGAGTTTTGGAATTGATTGTGCATACATGTG
520 GGTTTAGAGAACCTTGAATTATTGAGGACTCATTTGAGTTTTGGAATTGATTGTGCATACATGTG
648542 TTTCAAATTGAACGTGATATTCCTTATTCCAATTTCCTTTAATCATGTCAAATCCTAAACGACCT
585 TTTCAAATTGAACGTGATATTCCTTATTCCAATTTCCTTTAATCATGTCAAATCCTAAACGACCT
648607 AGGTCATCTTTGAGTCGGTCAAACCAAAACCGTCCTCCCGTTCCTCAACCTCCTAATCCCGTTCC
650 AGGTCATCTTTGAGTCGGTCAAACCAAAACCGTCCTCCCGTTCCTCAACCTCCTAATCCCGTTCC
648672 TCCTCCACCTTCATCTCTATTAGGATCTTGTTTTAACATGCCTGAGCGTCGTAGAGATGAATTGT
715 TCCTCCACCTTCATCTCTATTAGGATCTTGTTTTAACATGCCTGAGCGTCGTAGAGATGAATTGT
648737 ACTCTAGGTACAGAAACTCTTTCCAAACTTATAGAATCCGTGAAGAGCGTATTCCTTTGCTTCAA
780 ACTCTAGGTACAGAAACTCTTTCCAAACTTATAGAATCCGTGAAGAGCGTATTCCTTTGCTTCAA
648802 GCTATGGTTGACATTGATTTCGAATACCTTCTAATTCTTAAAGCTTGGAAGTTTGATAAATTGCT
845 GCTATGGTTGACATTGATTTCGAATACCTTCTAATTCTTAAAGCTTGGAAGTTTGATAAATTGCT
648867 TAACCTTAAACCTATCGTCTATCAACAATTGGTCCGCATTTTCTATTCCAATGCGGTGTGTATTC
910 TAACCTTAAACCTATCGTCTATCAACAATTGGTCCGCATTTTCTATTCCAATGCGGTGTGTATTC
648932 AAAATGAAACTC
975 AAAATGAAACTC
648944 AATGTGGAAC
Statistics
Matches: 980, Mismatches: 2, Indels: 5
0.99 0.00 0.01
Matches are distributed among these distances:
984 670 0.68
985 31 0.03
986 38 0.04
987 241 0.25
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (987 bp):
TGCATCGATGCATCCGTCGAGTTTTGGGTTAAAATGCATGATTTTCTTCATTTTTTCATACCCTA
AACCTAAAAACTCTCCCATCGTTCGTCCCTCTCTAACACTAAATCCTTCTCTTACTCAAAATCAT
CGGAAAATCATCGGTTTCTTCGTGCTTTTCATCTTCAAAATCTGCTTATATCATTAAATCATGCA
AAACAACTCCGCATCCCTCTCAATCCGAATTTTCAAGGTAATATTTCAAAAACCTCTATTTTATT
GATTTTTGATTTTAGAACTAGTTTTGATTAGTTCTAGGATGAACATTATATCGGGCATTGATTGT
TTGTTGGTTCTAAACTAGATTTTACTACCAATTTCGTCAAAAATAAACAAATTTTCAAGATTTTT
CTTTAAATTTCGAACTTAAAATATATATATATAATTTTAAAAATTAGTAATATTTTTGATTTAAT
TGTGTTGTTTTCATGAAAACTATATTATGATTAAATAGTTTTCAAAACATGCCCATTAGGATATG
GTTTAGAGAACCTTGAATTATTGAGGACTCATTTGAGTTTTGGAATTGATTGTGCATACATGTGT
TTCAAATTGAACGTGATATTCCTTATTCCAATTTCCTTTAATCATGTCAAATCCTAAACGACCTA
GGTCATCTTTGAGTCGGTCAAACCAAAACCGTCCTCCCGTTCCTCAACCTCCTAATCCCGTTCCT
CCTCCACCTTCATCTCTATTAGGATCTTGTTTTAACATGCCTGAGCGTCGTAGAGATGAATTGTA
CTCTAGGTACAGAAACTCTTTCCAAACTTATAGAATCCGTGAAGAGCGTATTCCTTTGCTTCAAG
CTATGGTTGACATTGATTTCGAATACCTTCTAATTCTTAAAGCTTGGAAGTTTGATAAATTGCTT
AACCTTAAACCTATCGTCTATCAACAATTGGTCCGCATTTTCTATTCCAATGCGGTGTGTATTCA
AAATGAAACTCG
Found at i:653599 original size:19 final size:20
Alignment explanation
Indices: 653561--653606 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
653551 TCATTCTTAG
**
653561 ATTCATAACTTTTTTTTCAA
1 ATTCATAACTTTAATTTCAA
653581 ATTCATAAC-TTAATTTCAA
1 ATTCATAACTTTAATTTCAA
*
653600 GTTCATA
1 ATTCATA
653607 GCCCAATGCA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.35, C:0.15, G:0.02, T:0.48
Consensus pattern (20 bp):
ATTCATAACTTTAATTTCAA
Found at i:655684 original size:20 final size:20
Alignment explanation
Indices: 655658--655915 Score: 121
Period size: 20 Copynumber: 11.7 Consensus size: 20
655648 TTCATTTATG
655658 GCATCCTTTCATGCCTTAAT
1 GCATCCTTTCATGCCTTAAT
* * *
655678 TCATCCTTTCAAGCATTTATTTAT
1 GCATCCTTTCATGC-CTTA---AT
655702 GACATCCTTTCATGCCTTAAT
1 G-CATCCTTTCATGCCTTAAT
* *
655723 GCATCATTTCATGCATTTTAGTTAT
1 GCATCCTTTCATGC--CTTA---AT
655748 GGCATCCTTTCATGCCTTAAT
1 -GCATCCTTTCATGCCTTAAT
*
655769 GCATCCTTTCATGCATTTTAGTTAT
1 GCATCCTTTCATGC--CTTA---AT
655794 GACATCCTTTCATG-C---AT
1 G-CATCCTTTCATGCCTTAAT
* *
655811 -TATCCTTTCATGCAGTTTAGTTAT
1 GCATCCTTTCATGC--CTTA---AT
655835 GGCATCCTTTCATGCCTTAAT
1 -GCATCCTTTCATGCCTTAAT
* *
655856 GCATCCTTTCATACATTTTAGTTAT
1 GCATCCTTTCATGC--CTTA---AT
655881 GGCATCCTTTCATGCCTTAAT
1 -GCATCCTTTCATGCCTTAAT
*
655902 GCATCTTTTCATGC
1 GCATCCTTTCATGC
655916 ATTTTTATTA
Statistics
Matches: 183, Mismatches: 21, Indels: 68
0.67 0.08 0.25
Matches are distributed among these distances:
15 11 0.06
17 2 0.01
20 64 0.35
21 12 0.07
22 9 0.05
24 16 0.09
25 19 0.10
26 50 0.27
ACGTcount: A:0.21, C:0.24, G:0.11, T:0.43
Consensus pattern (20 bp):
GCATCCTTTCATGCCTTAAT
Found at i:655846 original size:26 final size:25
Alignment explanation
Indices: 655812--655895 Score: 97
Period size: 26 Copynumber: 3.5 Consensus size: 25
655802 TTCATGCATT
655812 ATCCTTTCATGCAGTTTAGTTATGGC
1 ATCCTTTCATGCA-TTTAGTTATGGC
*
655838 ATCCTTTCATGC-CTTA---AT-GC
1 ATCCTTTCATGCATTTAGTTATGGC
*
655858 ATCCTTTCATACATTTTAGTTATGGC
1 ATCCTTTCATGCA-TTTAGTTATGGC
655884 ATCCTTTCATGC
1 ATCCTTTCATGC
655896 CTTAATGCAT
Statistics
Matches: 48, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
20 13 0.27
21 2 0.04
22 3 0.06
24 3 0.06
25 2 0.04
26 25 0.52
ACGTcount: A:0.20, C:0.24, G:0.13, T:0.43
Consensus pattern (25 bp):
ATCCTTTCATGCATTTAGTTATGGC
Found at i:655857 original size:87 final size:91
Alignment explanation
Indices: 655653--655916 Score: 394
Period size: 87 Copynumber: 2.9 Consensus size: 91
655643 TTAATTTCAT
* * *
655653 TTATGGCATCCTTTCATGCCTTAATTCATCCTTTCAAGCA-TTTATTTATGACATCCTTTCATGC
1 TTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATGACATCCTTTCATGC
* *
655717 CTTAATGCATCATTTCATGCATTTTAG
66 ATTAATGCA-CATTTCATGCAGTTTAG
655744 TTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATGACATCCTTTCATGC
1 TTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATGACATCCTTTCATGC
655809 ATT-AT-C-C-TTTCATGCAGTTTAG
66 ATTAATGCACATTTCATGCAGTTTAG
* *
655831 TTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATACATTTTAGTTATGGCATCCTTTCATGC
1 TTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATGACATCCTTTCATGC
* *
655896 CTTAATGCATCTTTTCATGCA
66 ATTAATGCA-CATTTCATGCA
655917 TTTTTATTAT
Statistics
Matches: 159, Mismatches: 8, Indels: 11
0.89 0.04 0.06
Matches are distributed among these distances:
87 79 0.50
88 3 0.02
89 1 0.01
90 1 0.01
91 41 0.26
92 34 0.21
ACGTcount: A:0.22, C:0.23, G:0.11, T:0.44
Consensus pattern (91 bp):
TTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATGACATCCTTTCATGC
ATTAATGCACATTTCATGCAGTTTAG
Found at i:655881 original size:133 final size:135
Alignment explanation
Indices: 655653--655928 Score: 425
Period size: 133 Copynumber: 2.0 Consensus size: 135
655643 TTAATTTCAT
* *
655653 TTATGGCATCCTTTCATGCCTTAATTCATCCTTTCAAGCATTTATTTATGACATCCTTTCATGCC
1 TTATGACATCCTTTCATGCC-T-ATTCATCCTTTCAAGCATTTAGTTATGACATCCTTTCATGCC
*
655718 TTAATGCATCATTTCATGCATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
64 TTAATGCATCATTTCATACATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
655783 A-TTTTA
129 ATTTTTA
* *
655789 GTTATGACATCCTTTCATG-C-ATT-ATCCTTTCATGCAGTTTAGTTATGGCATCCTTTCATGCC
1 -TTATGACATCCTTTCATGCCTATTCATCCTTTCAAGCA-TTTAGTTATGACATCCTTTCATGCC
* *
655851 TTAATGCATCCTTTCATACATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCTTTTCATGC
64 TTAATGCATCATTTCATACATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
655916 ATTTTTA
129 ATTTTTA
655923 TTATGA
1 TTATGA
655929 ATTCATTTTA
Statistics
Matches: 130, Mismatches: 7, Indels: 8
0.90 0.05 0.06
Matches are distributed among these distances:
132 12 0.09
133 95 0.73
134 5 0.04
136 1 0.01
137 17 0.13
ACGTcount: A:0.22, C:0.22, G:0.11, T:0.45
Consensus pattern (135 bp):
TTATGACATCCTTTCATGCCTATTCATCCTTTCAAGCATTTAGTTATGACATCCTTTCATGCCTT
AATGCATCATTTCATACATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCAT
TTTTA
Found at i:655927 original size:46 final size:46
Alignment explanation
Indices: 655653--655920 Score: 404
Period size: 46 Copynumber: 6.0 Consensus size: 46
655643 TTAATTTCAT
* * *
655653 TTATGGCATCCTTTCATGCCTTAATTCATCCTTTCAAGCA-TTTAT
1 TTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAG
* *
655698 TTATGACATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTAG
1 TTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAG
655744 TTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAG
1 TTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAG
* * *
655790 TTATGACATCCTTTCATG-C---AT-TATCCTTTCATGCAGTTTAG
1 TTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAG
*
655831 TTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATACATTTTAG
1 TTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAG
*
655877 TTATGGCATCCTTTCATGCCTTAATGCATCTTTTCATGCATTTT
1 TTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTT
655921 TATTATGAAT
Statistics
Matches: 201, Mismatches: 16, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
41 35 0.17
42 3 0.01
45 39 0.19
46 124 0.62
ACGTcount: A:0.21, C:0.23, G:0.11, T:0.44
Consensus pattern (46 bp):
TTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAG
Found at i:661635 original size:46 final size:46
Alignment explanation
Indices: 661575--661758 Score: 260
Period size: 46 Copynumber: 4.0 Consensus size: 46
661565 TTATTCATTA
* * * *
661575 ATTTCATTTATGGCATCCTTTTATGCCTTAATGTATCCTTTCATAC
1 ATTTCAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
* * *
661621 ATTTCATTTATGGCATCCTTTCATACCTTAATGCATTCTTTCATGC
1 ATTTCAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
* * *
661667 ATTTTAGTTATGTCATCCTTTCATGCCTTAATGCATCATTTCATGC
1 ATTTCAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
* *
661713 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCTTTTCATGC
1 ATTTCAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
661759 CTAATGCATC
Statistics
Matches: 125, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 125 1.00
ACGTcount: A:0.21, C:0.22, G:0.10, T:0.46
Consensus pattern (46 bp):
ATTTCAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
Found at i:661763 original size:19 final size:20
Alignment explanation
Indices: 661680--661960 Score: 125
Period size: 20 Copynumber: 12.7 Consensus size: 20
661670 TTAGTTATGT
*
661680 CATCCTTTCATGCCTTAATG
1 CATCATTTCATGCCTTAATG
*
661700 CATCATTTCATGCATTTTAGTTATGG
1 CATCATTTCATGC--CTTA---AT-G
*
661726 CATCCTTTCATGCCTTAATG
1 CATCATTTCATGCCTTAATG
*
661746 CATCTTTTCATGCC-TAATG
1 CATCATTTCATGCCTTAATG
*
661765 CATCATTTCATGCATTTTAGTTATG
1 CATCATTTCATGC--CTTA---ATG
* * *
661790 AGATCCTTTCATACCTTAAT-
1 -CATCATTTCATGCCTTAATG
*
661810 CATCATTTCATGCATTTTAGTTATGG
1 CATCATTTCATGC--CTTA---AT-G
*
661836 CATCCTTTCATGCCTTAATG
1 CATCATTTCATGCCTTAATG
* *
661856 CATCCTTTCATGCATTTTAGTTATG
1 CATCATTTCATGC--CTTA---ATG
*
661881 ACATCTTTTCATGCCTTAATG
1 -CATCATTTCATGCCTTAATG
* * *
661902 TATCCTTTCATGCATTTTAGTTATGG
1 CATCATTTCATGC--CTTA---AT-G
*
661928 CATCCTTTCATGCCTTAATG
1 CATCATTTCATGCCTTAATG
661948 CATCATTTCATGC
1 CATCATTTCATGC
661961 ATTTTAGTTA
Statistics
Matches: 203, Mismatches: 26, Indels: 64
0.69 0.09 0.22
Matches are distributed among these distances:
19 27 0.13
20 64 0.32
21 14 0.07
22 11 0.05
24 17 0.08
25 10 0.05
26 60 0.30
ACGTcount: A:0.22, C:0.23, G:0.11, T:0.44
Consensus pattern (20 bp):
CATCATTTCATGCCTTAATG
Found at i:661854 original size:110 final size:112
Alignment explanation
Indices: 661633--661868 Score: 397
Period size: 110 Copynumber: 2.1 Consensus size: 112
661623 TTCATTTATG
* * *
661633 GCATCCTTTCATACCTTAATGCATTCTTTCATGCATTTTAGTTATGTCATCCTTTCATGCCTTAA
1 GCATCCTTTCATGCCTTAATGCATTCTTTCATGCATTTTAGTTATGACATCCTTTCATACCTTAA
661698 TGCATCATTTCATGCATTTTAGTTATGGCATCCTTTCATGCCTTAAT
66 TGCATCATTTCATGCATTTTAGTTATGGCATCCTTTCATGCCTTAAT
* *
661745 GCATCTTTTCATGCC-TAATGCA-TCATTTCATGCATTTTAGTTATGAGATCCTTTCATACCTTA
1 GCATCCTTTCATGCCTTAATGCATTC-TTTCATGCATTTTAGTTATGACATCCTTTCATACCTTA
661808 AT-CATCATTTCATGCATTTTAGTTATGGCATCCTTTCATGCCTTAAT
65 ATGCATCATTTCATGCATTTTAGTTATGGCATCCTTTCATGCCTTAAT
661855 GCATCCTTTCATGC
1 GCATCCTTTCATGC
661869 ATTTTAGTTA
Statistics
Matches: 117, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
110 60 0.51
111 44 0.38
112 13 0.11
ACGTcount: A:0.22, C:0.23, G:0.11, T:0.44
Consensus pattern (112 bp):
GCATCCTTTCATGCCTTAATGCATTCTTTCATGCATTTTAGTTATGACATCCTTTCATACCTTAA
TGCATCATTTCATGCATTTTAGTTATGGCATCCTTTCATGCCTTAAT
Found at i:661854 original size:202 final size:203
Alignment explanation
Indices: 661589--661960 Score: 611
Period size: 202 Copynumber: 1.8 Consensus size: 203
661579 CATTTATGGC
* * * * *
661589 ATCCTTTTATGCCTTAATGTATCCTTTCATACATTTCATTTATGGCATCCTTTCATACCTTAATG
1 ATCCTTTCATACCTTAATGCATCATTTCATACATTTCAGTTATGGCATCCTTTCATACCTTAATG
* *
661654 CATTCTTTCATGCATTTTAGTTATGTCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTA
66 CATCCTTTCATGCATTTTAGTTATGACATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTA
*
661719 GTTATGGCATCCTTTCATGCCTTAATGCATCTTTTCATGCCTAATGCATCATTTCATGCATTTTA
131 GTTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCCTAATGCATCATTTCATGCATTTTA
661784 GTTATGAG
196 GTTATGAG
* * *
661792 ATCCTTTCATACCTTAAT-CATCATTTCATGCATTTTAGTTATGGCATCCTTTCATGCCTTAATG
1 ATCCTTTCATACCTTAATGCATCATTTCATACATTTCAGTTATGGCATCCTTTCATACCTTAATG
* * *
661856 CATCCTTTCATGCATTTTAGTTATGACATCTTTTCATGCCTTAATGTATCCTTTCATGCATTTTA
66 CATCCTTTCATGCATTTTAGTTATGACATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTA
661921 GTTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGC
131 GTTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGC
661961 ATTTTAGTTA
Statistics
Matches: 155, Mismatches: 14, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
202 139 0.90
203 16 0.10
ACGTcount: A:0.22, C:0.22, G:0.11, T:0.45
Consensus pattern (203 bp):
ATCCTTTCATACCTTAATGCATCATTTCATACATTTCAGTTATGGCATCCTTTCATACCTTAATG
CATCCTTTCATGCATTTTAGTTATGACATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTA
GTTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCCTAATGCATCATTTCATGCATTTTA
GTTATGAG
Found at i:661859 original size:156 final size:158
Alignment explanation
Indices: 661587--661914 Score: 495
Period size: 156 Copynumber: 2.1 Consensus size: 158
661577 TTCATTTATG
* * *
661587 GCATCCTTTT-ATGCCTTAATGTATCCTTTCATACATTTCATTTATGGCATCCTTTCATACCTTA
1 GCAT-CTTTTCATGCCTTAATGCATCATTTCATACATTTCAGTTATGGCATCCTTTCATACCTTA
*
661651 ATGCATTCTTTCATGCATTTTAGTTATGTCATCCTTTCATGCCTTAATGCATCATTTCATGCATT
65 ATGCATTCTTTCATGCATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATT
*
661716 TTAGTTATGGCATCCTTTCATGCCTTAAT
130 TTAGTTATGACATCCTTTCATGCCTTAAT
* *
661745 GCATCTTTTCATGCC-TAATGCATCATTTCATGCATTTTAGTTATGAG-ATCCTTTCATACCTTA
1 GCATCTTTTCATGCCTTAATGCATCATTTCATACATTTCAGTTATG-GCATCCTTTCATACCTTA
*
661808 AT-CA-TCATTTCATGCATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCAT
65 ATGCATTC-TTTCATGCATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCAT
*
661871 TTTAGTTATGACATCTTTTCATGCCTTAAT
129 TTTAGTTATGACATCCTTTCATGCCTTAAT
* *
661901 GTATCCTTTCATGC
1 GCATCTTTTCATGC
661915 ATTTTAGTTA
Statistics
Matches: 156, Mismatches: 11, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
155 2 0.01
156 96 0.62
157 48 0.31
158 10 0.06
ACGTcount: A:0.22, C:0.23, G:0.11, T:0.45
Consensus pattern (158 bp):
GCATCTTTTCATGCCTTAATGCATCATTTCATACATTTCAGTTATGGCATCCTTTCATACCTTAA
TGCATTCTTTCATGCATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTT
TAGTTATGACATCCTTTCATGCCTTAAT
Found at i:661879 original size:46 final size:46
Alignment explanation
Indices: 661745--661972 Score: 363
Period size: 46 Copynumber: 5.0 Consensus size: 46
661735 ATGCCTTAAT
*
661745 GCATCTTTTCATGCC-TAATGCATCATTTCATGCATTTTAGTTATG
1 GCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTAGTTATG
*
661790 AG-ATCCTTTCATACCTTAAT-CATCATTTCATGCATTTTAGTTATG
1 -GCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTAGTTATG
*
661835 GCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATG
1 GCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTAGTTATG
* * * *
661881 ACATCTTTTCATGCCTTAATGTATCCTTTCATGCATTTTAGTTATG
1 GCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTAGTTATG
661927 GCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTAGTTATG
1 GCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTAGTTATG
661973 AATTCAGTTT
Statistics
Matches: 168, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
44 1 0.01
45 53 0.32
46 114 0.68
ACGTcount: A:0.22, C:0.21, G:0.12, T:0.45
Consensus pattern (46 bp):
GCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTAGTTATG
Found at i:663704 original size:30 final size:29
Alignment explanation
Indices: 663643--663706 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
663633 ATATATATAT
* *
663643 CTTTTGAAAATGACACTTTGGTCTCCTAA
1 CTTTTGAAAATGACAATTTGGTCTCATAA
*
663672 CTTTTGAAAATTATCAATTTGGTCT-ATGAA
1 CTTTTGAAAATGA-CAATTTGGTCTCAT-AA
663702 CTTTT
1 CTTTT
663707 TCAAACTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 13 0.43
30 17 0.57
ACGTcount: A:0.28, C:0.16, G:0.12, T:0.44
Consensus pattern (29 bp):
CTTTTGAAAATGACAATTTGGTCTCATAA
Found at i:668969 original size:3 final size:3
Alignment explanation
Indices: 668961--669013 Score: 56
Period size: 3 Copynumber: 18.3 Consensus size: 3
668951 TTATATTACA
* * *
668961 ATT ATT ATT ATC A-T ATT ATT ACT A-T ATT ATT ATT ATT ATT AAT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
669007 AAT ATT A
1 ATT ATT A
669014 ATTAAGTTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
2 3 0.07
3 38 0.93
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.57
Consensus pattern (3 bp):
ATT
Found at i:668978 original size:14 final size:14
Alignment explanation
Indices: 668948--669013 Score: 59
Period size: 14 Copynumber: 4.9 Consensus size: 14
668938 CAGATTATAA
668948 ATATTA-TATTA-C
1 ATATTATTATTATC
668960 A-ATTATTATTATC
1 ATATTATTATTATC
*
668973 ATATTATTACTAT-
1 ATATTATTATTATC
*
668986 ATTATTATTATTATTA
1 A-TATTATTATTA-TC
*
669002 ATATTAATATTA
1 ATATTATTATTA
669014 ATTAAGTTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
11 4 0.09
12 6 0.13
13 3 0.07
14 20 0.44
15 11 0.24
16 1 0.02
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.55
Consensus pattern (14 bp):
ATATTATTATTATC
Found at i:679374 original size:8 final size:9
Alignment explanation
Indices: 679342--679401 Score: 59
Period size: 9 Copynumber: 6.6 Consensus size: 9
679332 TTTGCTTGAA
*
679342 GAAAAAAAA
1 GAAAAAAAT
679351 GAGAACAAAAT
1 GA-AA-AAAAT
679362 GAAAAAAAT
1 GAAAAAAAT
* *
679371 AAAAAAAAG
1 GAAAAAAAT
679380 GAAAAAAA-
1 GAAAAAAAT
*
679388 GGAAAAAAT
1 GAAAAAAAT
679397 GAAAA
1 GAAAA
679402 GGAAAAAATG
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
8 7 0.17
9 25 0.60
10 4 0.10
11 6 0.14
ACGTcount: A:0.78, C:0.02, G:0.15, T:0.05
Consensus pattern (9 bp):
GAAAAAAAT
Found at i:679403 original size:14 final size:14
Alignment explanation
Indices: 679384--679421 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
679374 AAAAAGGAAA
679384 AAAAGGAAAAAATG
1 AAAAGGAAAAAATG
679398 AAAAGGAAAAAATG
1 AAAAGGAAAAAATG
*
679412 AAAAAGAAAA
1 AAAAGGAAAA
679422 GAAAAAAGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.05
Consensus pattern (14 bp):
AAAAGGAAAAAATG
Found at i:679407 original size:20 final size:19
Alignment explanation
Indices: 679364--679439 Score: 68
Period size: 18 Copynumber: 3.9 Consensus size: 19
679354 AACAAAATGA
*
679364 AAAAAAT-AAAAA-AAAGG
1 AAAAAATGAAAAAGAAAAG
*
679381 AAAAAAAGGAAAAAATGAAAAGG
1 -AAAAAATG-AAAAA-GAAAA-G
679404 AAAAAATGAAAAAGAAAAG
1 AAAAAATGAAAAAGAAAAG
*
679423 AAAAAA-GAGAAAGAAAA
1 AAAAAATGAAAAAGAAAA
679440 AAAGAGAGAA
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
18 16 0.33
19 7 0.14
20 10 0.20
21 5 0.10
22 10 0.20
23 1 0.02
ACGTcount: A:0.79, C:0.00, G:0.17, T:0.04
Consensus pattern (19 bp):
AAAAAATGAAAAAGAAAAG
Found at i:679447 original size:16 final size:16
Alignment explanation
Indices: 679383--679459 Score: 55
Period size: 14 Copynumber: 5.4 Consensus size: 16
679373 AAAAAAGGAA
679383 AAAAAG-GA-AAAAAT
1 AAAAAGAGAGAAAAAT
*
679397 GAAAAG-GA-AAAAAT
1 AAAAAGAGAGAAAAAT
* *
679411 GAAAA-AGA-AAAGA-
1 AAAAAGAGAGAAAAAT
*
679424 AAAAAGAGA-AAGAA-
1 AAAAAGAGAGAAAAAT
679438 AAAAAGAGAGAAAAAT
1 AAAAAGAGAGAAAAAT
679454 AAAAAG
1 AAAAAG
679460 CAGGTCTAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
13 4 0.08
14 39 0.74
15 4 0.08
16 6 0.11
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.04
Consensus pattern (16 bp):
AAAAAGAGAGAAAAAT
Found at i:679449 original size:12 final size:13
Alignment explanation
Indices: 679412--679452 Score: 59
Period size: 12 Copynumber: 3.3 Consensus size: 13
679402 GGAAAAAATG
679412 AAAAAGA-AAAGA
1 AAAAAGAGAAAGA
679424 AAAAAGAGAAAGA
1 AAAAAGAGAAAGA
*
679437 AAAAA-AGAGAGA
1 AAAAAGAGAAAGA
679449 AAAA
1 AAAA
679453 TAAAAAGCAG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
12 17 0.63
13 10 0.37
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (13 bp):
AAAAAGAGAAAGA
Found at i:679458 original size:42 final size:40
Alignment explanation
Indices: 679364--679459 Score: 108
Period size: 41 Copynumber: 2.3 Consensus size: 40
679354 AACAAAATGA
*
679364 AAAAAATAAAAA-AAAGGAAAAAAAGGAAAAAATGAAAAGG
1 AAAAAATAAAAAGAAAAGAAAAAAAGGAAAAAA-GAAAAGG
679404 AAAAAATGAAAAAGAAAAG-AAAAAAGAGAAAGAAA-AAAAGAG
1 AAAAAAT-AAAAAGAAAAGAAAAAAAG-GAAA-AAAGAAAAG-G
679446 AGAAAAATAAAAAG
1 A-AAAAATAAAAAG
679460 CAGGTCTAAA
Statistics
Matches: 49, Mismatches: 1, Indels: 10
0.82 0.02 0.17
Matches are distributed among these distances:
40 7 0.14
41 17 0.35
42 16 0.33
43 9 0.18
ACGTcount: A:0.78, C:0.00, G:0.18, T:0.04
Consensus pattern (40 bp):
AAAAAATAAAAAGAAAAGAAAAAAAGGAAAAAAGAAAAGG
Found at i:681175 original size:53 final size:54
Alignment explanation
Indices: 680714--681174 Score: 680
Period size: 54 Copynumber: 8.6 Consensus size: 54
680704 GAAGCAAAAT
* * * *
680714 AAGATTGTCCGAGTTC-TACTCCCTGAAGCAAGAGAGAGCAAACTCGTAGGTAG
1 AAGATTGTTCGAGTTCTTACTCCCTGAAGCAAGAGAGAGCGAACCCGTAGGCAG
*
680767 AAGATTGTTCGAGTTCTTACTCCCTGAAGCAAGAGAGAGCGAACCCGTAGGAAG
1 AAGATTGTTCGAGTTCTTACTCCCTGAAGCAAGAGAGAGCGAACCCGTAGGCAG
*
680821 AAGATTGTTTGAGTTCTTACTCCCTGAAGCAAGAGAGAGCGAACCCGTAGGCAG
1 AAGATTGTTCGAGTTCTTACTCCCTGAAGCAAGAGAGAGCGAACCCGTAGGCAG
*
680875 AAGATTGTTCGAGTTCTTACTCCCTGAAGCAAGAGAGAGCGAACCCGTAGACAG
1 AAGATTGTTCGAGTTCTTACTCCCTGAAGCAAGAGAGAGCGAACCCGTAGGCAG
* * *
680929 AAGATTGTTCGAGTTCTTACTCCTTGAAGCAAGAGAGAGCGAA-CCATAGGAAG
1 AAGATTGTTCGAGTTCTTACTCCCTGAAGCAAGAGAGAGCGAACCCGTAGGCAG
* * *
680982 AAGATTGTTTGAGTTCTTACTCCCTGAAGCAAGAGAGAGCGAACTCGTAGGCAA
1 AAGATTGTTCGAGTTCTTACTCCCTGAAGCAAGAGAGAGCGAACCCGTAGGCAG
* * * *
681036 AAGATTGTTCGAGTTC-TACTCCCTGAAGCAAGAGAAATCGAACCTGTAGGCAT
1 AAGATTGTTCGAGTTCTTACTCCCTGAAGCAAGAGAGAGCGAACCCGTAGGCAG
* * * * *
681089 AAGATTGTTCGAGTTC-TACTCCTTAAAGTAAGAAAGAGCGAACCAGTAGGCAG
1 AAGATTGTTCGAGTTCTTACTCCCTGAAGCAAGAGAGAGCGAACCCGTAGGCAG
*
681142 AAGATTGTTCGAGTTC-TACTTCCTGAAGCAAGA
1 AAGATTGTTCGAGTTCTTACTCCCTGAAGCAAGA
681175 AGGAGAGGAC
Statistics
Matches: 370, Mismatches: 36, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
53 169 0.46
54 201 0.54
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.23
Consensus pattern (54 bp):
AAGATTGTTCGAGTTCTTACTCCCTGAAGCAAGAGAGAGCGAACCCGTAGGCAG
Found at i:681385 original size:14 final size:14
Alignment explanation
Indices: 681366--681444 Score: 76
Period size: 14 Copynumber: 5.8 Consensus size: 14
681356 TTTGTCTGAT
681366 TTATAAATATTA-TA
1 TTAT-AATATTATTA
681380 TTATAATATTATTA
1 TTATAATATTATTA
*
681394 TTATCATATTATTA
1 TTATAATATTATTA
* *
681408 CTATATTATT-TTA
1 TTATAATATTATTA
681421 TTAT--TATTATTA
1 TTATAATATTATTA
*
681433 ATATTAATATTA
1 TTA-TAATATTA
681445 ATTAGGTTTT
Statistics
Matches: 54, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
11 4 0.07
12 5 0.09
13 14 0.26
14 26 0.48
15 5 0.09
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.57
Consensus pattern (14 bp):
TTATAATATTATTA
Found at i:681394 original size:3 final size:3
Alignment explanation
Indices: 681373--681444 Score: 64
Period size: 3 Copynumber: 25.7 Consensus size: 3
681363 GATTTATAAA
* * *
681373 TAT TA- TAT TA- TAA TAT TAT TAT TAT CA- TAT TAT TAC TA- TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
681417 T-T TAT TAT TAT TAT TAA TAT TAA TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
681445 ATTAGGTTTT
Statistics
Matches: 56, Mismatches: 8, Indels: 10
0.76 0.11 0.14
Matches are distributed among these distances:
2 9 0.16
3 47 0.84
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:681394 original size:11 final size:11
Alignment explanation
Indices: 681377--681438 Score: 54
Period size: 11 Copynumber: 5.5 Consensus size: 11
681367 TATAAATATT
*
681377 ATATTATAATA
1 ATATTATTATA
* *
681388 TTATTATTATC
1 ATATTATTATA
681399 ATATTATTACT-
1 ATATTATTA-TA
*
681410 ATATTATTTTA
1 ATATTATTATA
*
681421 TTATTATTATTA
1 ATATTATTA-TA
681433 ATATTA
1 ATATTA
681439 ATATTAATTA
Statistics
Matches: 40, Mismatches: 8, Indels: 5
0.75 0.15 0.09
Matches are distributed among these distances:
10 1 0.03
11 31 0.77
12 8 0.20
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (11 bp):
ATATTATTATA
Found at i:681397 original size:19 final size:18
Alignment explanation
Indices: 681373--681444 Score: 62
Period size: 19 Copynumber: 3.9 Consensus size: 18
681363 GATTTATAAA
681373 TATTATATTATAATATTAT
1 TATTATATTAT-ATATTAT
681392 TATTATCA-TAT-TATTACT
1 TATTAT-ATTATATATTA-T
*
681410 ATATTATTTTAT-TATTAT
1 -TATTATATTATATATTAT
681428 TATTAATATTA-ATATTA
1 TATT-ATATTATATATTA
681445 ATTAGGTTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 13
0.75 0.03 0.22
Matches are distributed among these distances:
17 9 0.20
18 12 0.27
19 23 0.51
20 1 0.02
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (18 bp):
TATTATATTATATATTAT
Found at i:681448 original size:25 final size:23
Alignment explanation
Indices: 681373--681444 Score: 76
Period size: 25 Copynumber: 3.1 Consensus size: 23
681363 GATTTATAAA
*
681373 TATTATATTA-TAATATTATTAT
1 TATTATATTATTAATATTAATAT
* *
681395 TATCATATTATTACTATATT-ATTT
1 TATTATATTATTA--ATATTAATAT
681419 TATTATTATTATTAATATTAATAT
1 TATTA-TATTATTAATATTAATAT
681443 TA
1 TA
681445 ATTAGGTTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
22 9 0.22
23 7 0.17
24 11 0.28
25 13 0.32
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (23 bp):
TATTATATTATTAATATTAATAT
Found at i:681579 original size:22 final size:22
Alignment explanation
Indices: 681551--681593 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
681541 CCACCAAGCA
681551 CCAACCCAGACCCGGTTACAAC
1 CCAACCCAGACCCGGTTACAAC
* *
681573 CCAACCCGGACCTGGTTACAA
1 CCAACCCAGACCCGGTTACAA
681594 GACCCGACCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.30, C:0.42, G:0.16, T:0.12
Consensus pattern (22 bp):
CCAACCCAGACCCGGTTACAAC
Found at i:686658 original size:74 final size:74
Alignment explanation
Indices: 686545--686688 Score: 227
Period size: 74 Copynumber: 1.9 Consensus size: 74
686535 CTCACTAATT
* * * *
686545 TTAAAATTAAAAATAAAAACTACATTGGAGATGGTTTACCTACAATCCATA-TTCACTGTTCACT
1 TTAAAATTAAAAATAAAAACTACAGTGGAGATGGCTTACCTACAATCCA-ACCTCACTGTTCACC
686609 AATTTTAAAA
65 AATTTTAAAA
*
686619 TTAAAATTAAAAATAAAAACTACAGTGGAGATGGCTTACCTACAATCTAACCTCACTGTTCACCA
1 TTAAAATTAAAAATAAAAACTACAGTGGAGATGGCTTACCTACAATCCAACCTCACTGTTCACCA
686684 ATTTT
66 ATTTT
686689 TCTAAAAAGG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
73 1 0.02
74 63 0.98
ACGTcount: A:0.42, C:0.17, G:0.09, T:0.32
Consensus pattern (74 bp):
TTAAAATTAAAAATAAAAACTACAGTGGAGATGGCTTACCTACAATCCAACCTCACTGTTCACCA
ATTTTAAAA
Found at i:687475 original size:2 final size:2
Alignment explanation
Indices: 687468--687494 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
687458 TAGTTTACTT
687468 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
687495 GATGTAGTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:687754 original size:21 final size:21
Alignment explanation
Indices: 687729--687773 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
687719 ATTTGGAGAA
687729 AATAATATTTAAAT-AAAAATT
1 AATAA-ATTTAAATAAAAAATT
**
687750 AATAAATTTATCTAAAAAATT
1 AATAAATTTAAATAAAAAATT
687771 AAT
1 AAT
687774 CTCAACTTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (21 bp):
AATAAATTTAAATAAAAAATT
Found at i:696910 original size:21 final size:21
Alignment explanation
Indices: 696886--696935 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
696876 TGGGATTAAT
696886 CCCTTTACAAAAAGGATCGAC
1 CCCTTTACAAAAAGGATCGAC
** ** *
696907 CCCTCGAGGAAAAGGATCGAT
1 CCCTTTACAAAAAGGATCGAC
696928 CCCTTTAC
1 CCCTTTAC
696936 CTAAATGATT
Statistics
Matches: 21, Mismatches: 8, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.32, C:0.30, G:0.18, T:0.20
Consensus pattern (21 bp):
CCCTTTACAAAAAGGATCGAC
Done.