genome.fa.s786.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000786.1 Hibiscus syriacus cultivar Beakdansim tig00001524_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  138652

Tables:   1   

This is table  1  of  1  ( 94 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2--207	89	2.4	86	88	4	288	22	22	25	30	1.99
2034--3022	360	2.7	361	85	6	1308	37	12	12	37	1.81
3761--3832	30	2.4	30	92	0	117	30	25	20	23	1.99
3870--3987	32	3.8	32	77	7	143	31	16	16	35	1.91
3861--4007	63	2.3	63	91	0	258	31	17	15	35	1.92
3852--4004	32	4.9	32	74	12	140	30	18	15	35	1.92
20352--20388	17	2.2	17	90	0	56	8	13	2	75	1.13
21560--21612	26	2.0	26	100	0	106	26	18	18	35	1.95
23363--23444	29	2.8	29	94	1	137	32	14	9	42	1.79
28127--28208	29	2.8	29	94	1	137	32	14	9	42	1.79
30918--30951	14	2.4	14	90	0	50	61	17	8	11	1.54
32888--32957	24	2.9	23	75	8	68	24	8	10	57	1.59
33128--33208	23	3.5	23	81	1	72	13	9	16	60	1.58
36103--36145	18	2.3	19	80	8	52	39	4	2	53	1.34
36361--36740	157	2.4	156	80	6	399	45	6	16	31	1.73
37591--37649	24	2.5	24	100	0	118	23	3	11	61	1.46
42093--42225	60	2.3	58	80	11	139	44	4	7	43	1.52
42178--42270	33	3.0	31	72	20	77	48	3	6	41	1.45
43440--43509	4	17.0	4	72	16	54	25	1	5	67	1.21
43423--43483	31	2.0	30	87	3	86	27	0	6	65	1.17
43439--43509	27	2.6	27	80	4	81	26	1	5	66	1.22
43439--43531	19	5.1	19	73	19	74	29	3	6	61	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46262--46338	2	38.5	2	100	0	154	50	0	0	49	1.00
46502--46594	12	7.8	12	70	13	66	50	17	13	18	1.78
46507--46594	24	3.7	24	80	6	106	50	17	13	19	1.79
47157--47199	17	2.5	17	96	0	77	27	30	0	41	1.56
49033--49061	10	2.9	10	100	0	58	20	27	41	10	1.85
51175--51245	26	2.7	26	97	0	133	19	21	4	54	1.60
51382--51444	30	2.1	30	93	0	108	25	6	11	57	1.57
62001--62062	23	2.7	22	78	11	72	33	25	24	16	1.95
64284--64336	20	2.7	20	91	2	81	32	28	20	18	1.97
64593--64627	10	3.5	10	84	0	52	62	25	2	8	1.38
65368--65646	140	2.0	139	98	0	540	32	21	20	25	1.98
70608--70646	13	3.1	13	92	3	62	41	7	0	51	1.31
72806--72843	20	1.9	20	88	0	58	34	34	13	18	1.89
72890--72955	26	2.5	26	100	0	132	24	24	22	28	1.99
72863--72996	72	1.9	71	81	4	162	27	23	20	29	1.99
80157--80259	53	1.9	53	84	3	136	40	6	7	44	1.60
84510--84534	13	1.9	13	100	0	50	52	0	0	48	1.00
86136--86300	8	20.8	8	69	17	53	21	20	16	41	1.90
86108--86722	24	25.5	24	70	7	187	21	19	18	40	1.91
86112--86388	16	17.4	16	70	12	88	20	19	18	41	1.91
86312--86459	8	18.5	8	72	0	80	17	16	22	43	1.88
86492--87657	8	146.0	8	67	3	187	23	18	17	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86493--87011	16	32.4	16	69	9	252	21	17	17	42	1.89
86136--87664	32	48.2	32	69	10	291	22	18	17	41	1.90
87051--87641	24	24.4	24	70	11	215	24	18	15	40	1.90
87325--87392	31	2.2	32	89	2	102	22	20	17	39	1.92
87570--87704	16	8.4	16	71	11	71	25	20	15	38	1.92
87683--87716	16	2.1	16	88	0	50	26	17	14	41	1.88
87696--87760	24	2.7	24	85	4	78	21	16	13	47	1.82
87747--87826	8	10.0	8	72	5	54	28	10	18	42	1.83
87756--87825	32	2.2	33	79	7	81	30	10	15	44	1.79
87742--87826	24	3.5	24	69	6	64	29	10	17	42	1.83
88340--88368	14	2.0	15	93	6	51	24	0	0	75	0.80
99234--99289	3	18.3	3	85	10	78	35	0	1	62	1.06
101517--101573	18	3.3	16	77	18	53	24	1	0	73	0.92
101531--101568	10	3.8	10	93	6	60	26	0	0	73	0.83
101531--101568	19	1.9	20	89	10	60	26	0	0	73	0.83
110815--111013	97	2.1	96	97	0	371	27	13	16	43	1.84
111421--111582	54	3.1	54	78	7	181	40	15	21	22	1.91
111903--111957	22	2.5	22	90	0	92	34	10	12	41	1.78
112364--112657	113	2.6	113	87	1	439	37	14	19	27	1.91
112632--112677	20	2.3	20	96	0	83	47	13	23	15	1.80
112519--112790	133	2.0	133	92	1	447	38	14	20	25	1.91
112652--113710	113	9.4	112	87	5	1277	38	14	19	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113411--113595	100	1.8	102	91	3	311	41	12	21	24	1.88
113516--113847	123	2.7	123	87	2	469	39	15	17	27	1.89
114052--114087	14	2.8	13	91	8	56	38	0	2	58	1.13
114691--114715	11	2.3	11	100	0	50	32	32	28	8	1.86
115503--115556	23	2.2	26	80	12	69	35	5	0	59	1.21
116246--116292	16	3.0	15	79	14	51	25	2	0	72	0.96
116265--116293	13	2.1	14	93	6	51	24	0	0	75	0.80
126060--126208	53	2.8	53	79	6	153	38	15	23	22	1.92
126060--126208	50	2.9	54	78	8	157	38	15	23	22	1.92
126541--126595	22	2.5	22	90	0	92	34	10	12	41	1.78
127002--127295	113	2.6	113	89	1	457	37	14	19	28	1.91
127270--127315	20	2.3	20	96	0	83	47	13	23	15	1.80
127157--127428	133	2.0	133	91	1	438	38	14	21	25	1.92
127290--128348	113	9.4	112	86	6	1252	38	14	19	26	1.91
128049--128233	100	1.8	102	90	5	304	41	12	20	24	1.88
128154--128465	123	2.6	122	86	3	427	41	14	16	26	1.87
128154--128509	123	2.9	118	81	9	405	41	14	16	27	1.87
128692--128738	3	15.3	3	78	12	51	38	0	2	59	1.09
129338--129362	11	2.3	11	100	0	50	32	24	28	16	1.96
133032--133251	42	5.2	42	76	7	151	36	18	21	24	1.95
133292--133485	41	4.8	42	86	7	267	33	13	20	31	1.92
133295--133485	81	2.4	81	87	5	271	34	13	20	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134160--134262	41	2.5	42	81	6	113	28	14	23	33	1.94
134490--134543	18	3.0	18	83	0	72	24	44	12	18	1.85
136662--136688	6	4.5	6	100	0	54	0	18	29	51	1.46
137137--137191	21	2.6	21	77	11	67	41	18	38	1	1.61
137199--137238	21	1.9	21	94	0	71	47	17	30	5	1.69
138616--138645	14	2.1	14	100	0	60	6	66	20	6	1.38

Tables:   1

The End!