Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007860.1 Hibiscus syriacus cultivar Beakdansim tig00110223_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2941097
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 11 of 16
Found at i:1772391 original size:30 final size:31
Alignment explanation
Indices: 1772350--1772409 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
1772340 CTTAGCTTTA
* **
1772350 TATTATGTTTACATATGTTTTAGAT-TCATT
1 TATTATATTTACATATCATTTAGATATCATT
1772380 TATTATATTTACATATCATTTAGATATCAT
1 TATTATATTTACATATCATTTAGATATCAT
1772410 GGCAGCATGT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.32, C:0.08, G:0.07, T:0.53
Consensus pattern (31 bp):
TATTATATTTACATATCATTTAGATATCATT
Found at i:1772941 original size:22 final size:20
Alignment explanation
Indices: 1772916--1772955 Score: 62
Period size: 22 Copynumber: 1.9 Consensus size: 20
1772906 TGGACTAAAG
1772916 GTAGCTGAGTGTAGCTGAGATA
1 GTAGCTGAG-G-AGCTGAGATA
1772938 GTAGCTGAGGAGCTGAGA
1 GTAGCTGAGGAGCTGAGA
1772956 AGACCAAAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.44
21 1 0.06
22 9 0.50
ACGTcount: A:0.28, C:0.10, G:0.40, T:0.23
Consensus pattern (20 bp):
GTAGCTGAGGAGCTGAGATA
Found at i:1774091 original size:19 final size:18
Alignment explanation
Indices: 1774068--1774149 Score: 75
Period size: 18 Copynumber: 4.7 Consensus size: 18
1774058 AATTGGAGTG
*
1774068 CAAAAAGAAAAGAAAAGA
1 CAAAAAGAAAAGAAAAGT
*
1774086 CAAAAAGAAGAA-AAAATT
1 CAAAAAGAA-AAGAAAAGT
1774104 CAGAAAAG--AAGAAAAG-
1 CA-AAAAGAAAAGAAAAGT
*
1774120 -AAAAAGAAAAGAAAATT
1 CAAAAAGAAAAGAAAAGT
1774137 CAAAAAGAGAAAG
1 CAAAAAGA-AAAG
1774150 CAAGCCAAGG
Statistics
Matches: 52, Mismatches: 4, Indels: 15
0.73 0.06 0.21
Matches are distributed among these distances:
14 5 0.10
15 1 0.02
16 9 0.17
17 4 0.08
18 22 0.42
19 11 0.21
ACGTcount: A:0.73, C:0.05, G:0.17, T:0.05
Consensus pattern (18 bp):
CAAAAAGAAAAGAAAAGT
Found at i:1774298 original size:15 final size:15
Alignment explanation
Indices: 1774278--1774316 Score: 78
Period size: 15 Copynumber: 2.6 Consensus size: 15
1774268 AAGTCACCTC
1774278 TTCATTTTCTATCCT
1 TTCATTTTCTATCCT
1774293 TTCATTTTCTATCCT
1 TTCATTTTCTATCCT
1774308 TTCATTTTC
1 TTCATTTTC
1774317 CTTGTCTTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.13, C:0.26, G:0.00, T:0.62
Consensus pattern (15 bp):
TTCATTTTCTATCCT
Found at i:1775166 original size:22 final size:22
Alignment explanation
Indices: 1775125--1775167 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
1775115 AAACACATTG
*
1775125 AAGAATAACATTGAAGCAATGA
1 AAGAATAACATTAAAGCAATGA
1775147 AAGAATAAC-TTAAAGACAATG
1 AAGAATAACATTAAAG-CAATG
1775168 CAAATAAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.56, C:0.09, G:0.16, T:0.19
Consensus pattern (22 bp):
AAGAATAACATTAAAGCAATGA
Found at i:1776627 original size:30 final size:31
Alignment explanation
Indices: 1776582--1776641 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
1776572 CTTAGCTTTA
* **
1776582 TATTATGTTTACATATGTTTTAGAT-TCATT
1 TATTATATTTACATATCATTTAGATATCATT
*
1776612 TATTATATTTGCATATCATTTAGATATCAT
1 TATTATATTTACATATCATTTAGATATCAT
1776642 GGCAGCATGT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.30, C:0.08, G:0.08, T:0.53
Consensus pattern (31 bp):
TATTATATTTACATATCATTTAGATATCATT
Found at i:1777506 original size:20 final size:21
Alignment explanation
Indices: 1777478--1777535 Score: 91
Period size: 21 Copynumber: 2.8 Consensus size: 21
1777468 ATATTCGGCC
* *
1777478 AAAAGCATGTATCTTCA-TTA
1 AAAATCATGTATTTTCATTTA
1777498 AAAATCATGTATTTTCATTTA
1 AAAATCATGTATTTTCATTTA
1777519 AAAATCATGTATTTTCA
1 AAAATCATGTATTTTCA
1777536 AAGGGATTTC
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
20 15 0.43
21 20 0.57
ACGTcount: A:0.40, C:0.12, G:0.07, T:0.41
Consensus pattern (21 bp):
AAAATCATGTATTTTCATTTA
Found at i:1784806 original size:3 final size:3
Alignment explanation
Indices: 1784800--1784829 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
1784790 TTGGTTTGTA
1784800 AAT AAT AAT AAT AAT AAT -AT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1784830 GTATAGGGGT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 24 0.92
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:1784823 original size:14 final size:14
Alignment explanation
Indices: 1784804--1784834 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
1784794 TTTGTAAATA
1784804 ATAATAATAATAAT
1 ATAATAATAATAAT
*
1784818 ATAATAATAATAGT
1 ATAATAATAATAAT
1784832 ATA
1 ATA
1784835 GGGGTAGATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.35
Consensus pattern (14 bp):
ATAATAATAATAAT
Found at i:1785699 original size:21 final size:21
Alignment explanation
Indices: 1785675--1785715 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
1785665 ACCAATATTT
*
1785675 CTCATAGTAGTACCGATACTA
1 CTCATAGAAGTACCGATACTA
* *
1785696 CTCATGGAAGTATCGATACT
1 CTCATAGAAGTACCGATACT
1785716 CAAAATGAGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (21 bp):
CTCATAGAAGTACCGATACTA
Found at i:1787145 original size:30 final size:30
Alignment explanation
Indices: 1787111--1787206 Score: 165
Period size: 30 Copynumber: 3.2 Consensus size: 30
1787101 AATTGTGAGA
1787111 AAATTTCTTAATAGCTTATCAATGGCTTGG
1 AAATTTCTTAATAGCTTATCAATGGCTTGG
1787141 AAATTTCTTAATAGCTTATCAATGGCTTGG
1 AAATTTCTTAATAGCTTATCAATGGCTTGG
* *
1787171 GAATTTCTTAATAGCTTATCATTGGCTTGG
1 AAATTTCTTAATAGCTTATCAATGGCTTGG
*
1787201 GAATTT
1 AAATTT
1787207 AAGAGGATGC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 64 1.00
ACGTcount: A:0.28, C:0.12, G:0.18, T:0.42
Consensus pattern (30 bp):
AAATTTCTTAATAGCTTATCAATGGCTTGG
Found at i:1791461 original size:20 final size:23
Alignment explanation
Indices: 1791435--1791497 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 23
1791425 TTCATGCATT
1791435 TAGTACCGATACTATTCTT-A-C
1 TAGTACCGATACTATTCTTCATC
*
1791456 -AGTACCGATATTATTCTTCATC
1 TAGTACCGATACTATTCTTCATC
* *
1791478 TACTATCGATACTATTCTTC
1 TAGTACCGATACTATTCTTC
1791498 CAGCATCAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
20 17 0.49
21 1 0.03
22 1 0.03
23 16 0.46
ACGTcount: A:0.27, C:0.24, G:0.08, T:0.41
Consensus pattern (23 bp):
TAGTACCGATACTATTCTTCATC
Found at i:1791493 original size:23 final size:21
Alignment explanation
Indices: 1791438--1791497 Score: 68
Period size: 23 Copynumber: 2.8 Consensus size: 21
1791428 ATGCATTTAG
*
1791438 TACCGATACTATTCTT-ACAG
1 TACCGATACTATTCTTCACAC
*
1791458 TACCGATATTATTCTTCATCTAC
1 TACCGATACTATTCTTCA-C-AC
*
1791481 TATCGATACTATTCTTC
1 TACCGATACTATTCTTC
1791498 CAGCATCAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
20 15 0.45
21 1 0.03
22 1 0.03
23 16 0.48
ACGTcount: A:0.27, C:0.25, G:0.07, T:0.42
Consensus pattern (21 bp):
TACCGATACTATTCTTCACAC
Found at i:1792965 original size:37 final size:37
Alignment explanation
Indices: 1792915--1792989 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
1792905 GAGGAGGCAA
1792915 GGACGTTGTGTCATTACTTTTAGACTTTTATGGAGAT
1 GGACGTTGTGTCATTACTTTTAGACTTTTATGGAGAT
1792952 GGACGTTGTGTCATTACTTTTAGACTTTTATGGAGAT
1 GGACGTTGTGTCATTACTTTTAGACTTTTATGGAGAT
1792989 G
1 G
1792990 ATTGTCTTCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.21, C:0.11, G:0.25, T:0.43
Consensus pattern (37 bp):
GGACGTTGTGTCATTACTTTTAGACTTTTATGGAGAT
Found at i:1793927 original size:21 final size:22
Alignment explanation
Indices: 1793875--1793928 Score: 58
Period size: 21 Copynumber: 2.5 Consensus size: 22
1793865 AATGTCAAGT
**
1793875 AGTATCGATACTTCTCATAGCA
1 AGTATCGATACTAATCATAGCA
**
1793897 A-TATAAATACTAATCATAG-A
1 AGTATCGATACTAATCATAGCA
1793917 AGTATCGATACT
1 AGTATCGATACT
1793929 CGAATTTAGA
Statistics
Matches: 25, Mismatches: 6, Indels: 3
0.74 0.18 0.09
Matches are distributed among these distances:
20 2 0.08
21 22 0.88
22 1 0.04
ACGTcount: A:0.41, C:0.17, G:0.11, T:0.31
Consensus pattern (22 bp):
AGTATCGATACTAATCATAGCA
Found at i:1804118 original size:26 final size:27
Alignment explanation
Indices: 1804056--1804153 Score: 101
Period size: 26 Copynumber: 3.6 Consensus size: 27
1804046 TCTTAAGTAG
*
1804056 CTCTTAAATTCACATCCTACTTCTAAAAGA
1 CTCTTAAATTCACAT-C-AATTC-AAAAGA
* *
1804086 CTATTAAATTCTCATCAATTCAAAA-A
1 CTCTTAAATTCACATCAATTCAAAAGA
**
1804112 CTCTTAAATTCACATCAATTC-AGTGA
1 CTCTTAAATTCACATCAATTCAAAAGA
*
1804138 CTCTCAAATTCACATC
1 CTCTTAAATTCACATC
1804154 TGTGCCCAGG
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
25 1 0.02
26 36 0.61
27 4 0.07
28 4 0.07
29 1 0.02
30 13 0.22
ACGTcount: A:0.38, C:0.26, G:0.03, T:0.34
Consensus pattern (27 bp):
CTCTTAAATTCACATCAATTCAAAAGA
Found at i:1805740 original size:10 final size:10
Alignment explanation
Indices: 1805727--1805760 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
1805717 AAACAAACAC
*
1805727 ACAACACAAC
1 ACAACACAAA
1805737 ACAACACAAA
1 ACAACACAAA
*
1805747 ACAAAACAAA
1 ACAACACAAA
1805757 ACAA
1 ACAA
1805761 AAATCCTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.71, C:0.29, G:0.00, T:0.00
Consensus pattern (10 bp):
ACAACACAAA
Found at i:1805744 original size:17 final size:16
Alignment explanation
Indices: 1805716--1805762 Score: 60
Period size: 17 Copynumber: 2.9 Consensus size: 16
1805706 GAGAAACAAA
*
1805716 AAAACAAACACACAAC
1 AAAACAAACACAAAAC
*
1805732 ACAACACAACACAAAAC
1 AAAACA-AACACAAAAC
1805749 AAAACAAA-ACAAAA
1 AAAACAAACACAAAA
1805763 ATCCTATAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 6 0.22
16 7 0.26
17 14 0.52
ACGTcount: A:0.72, C:0.28, G:0.00, T:0.00
Consensus pattern (16 bp):
AAAACAAACACAAAAC
Found at i:1805745 original size:15 final size:15
Alignment explanation
Indices: 1805716--1805762 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
1805706 GAGAAACAAA
1805716 AAAAC-AAAC-ACAC
1 AAAACAAAACAACAC
* *
1805729 AACACAACACAACAC
1 AAAACAAAACAACAC
*
1805744 AAAACAAAACAAAAC
1 AAAACAAAACAACAC
1805759 AAAA
1 AAAA
1805763 ATCCTATAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
13 4 0.15
14 3 0.11
15 20 0.74
ACGTcount: A:0.72, C:0.28, G:0.00, T:0.00
Consensus pattern (15 bp):
AAAACAAAACAACAC
Found at i:1810993 original size:10 final size:10
Alignment explanation
Indices: 1810978--1811007 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
1810968 CTTGATTCTA
1810978 GTTTCTTGTT
1 GTTTCTTGTT
*
1810988 GTTTCTTCTT
1 GTTTCTTGTT
1810998 GTTTCTTGTT
1 GTTTCTTGTT
1811008 ATTGATCAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.00, C:0.13, G:0.17, T:0.70
Consensus pattern (10 bp):
GTTTCTTGTT
Found at i:1811352 original size:72 final size:71
Alignment explanation
Indices: 1811245--1811387 Score: 218
Period size: 72 Copynumber: 2.0 Consensus size: 71
1811235 GATGCATAAA
* * *
1811245 ATGCATTCGATGTTTTAAAATAGCCTGAGTGCATCGATGCATGGCT-TGTGCATCGATGCATAAA
1 ATGCATTCAATGTTTTAAAATACCCAGAGTGCATCGATGCATGG-TATGTGCATCGATGCATAAA
1811309 ATGCATT
65 ATGCATT
1811316 ATGCATTCAATGTTTTCATAAA-ACCCAGAGTGCATCGATGCATGGTATGTGCATCGATGCATAA
1 ATGCATTCAATGTTTT-A-AAATACCCAGAGTGCATCGATGCATGGTATGTGCATCGATGCATAA
1811380 AATGCATT
64 AATGCATT
1811388 CGATGTTCAA
Statistics
Matches: 66, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
71 16 0.24
72 47 0.71
73 3 0.05
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.31
Consensus pattern (71 bp):
ATGCATTCAATGTTTTAAAATACCCAGAGTGCATCGATGCATGGTATGTGCATCGATGCATAAAA
TGCATT
Found at i:1814153 original size:23 final size:21
Alignment explanation
Indices: 1814118--1814181 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
1814108 AACCCGACGT
*
1814118 ATGCATCAATGCACATTCAAGG
1 ATGCATCGATGCACATTCAA-G
*
1814140 AATGCATCGGTGCATC-TTCAAG
1 -ATGCATCGATGCA-CATTCAAG
*
1814162 ATGTATCGATGCACATTCAA
1 ATGCATCGATGCACATTCAA
1814182 AGGGATGAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
20 1 0.03
21 16 0.46
22 1 0.03
23 16 0.46
24 1 0.03
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.27
Consensus pattern (21 bp):
ATGCATCGATGCACATTCAAG
Found at i:1814180 original size:21 final size:22
Alignment explanation
Indices: 1814126--1814218 Score: 70
Period size: 21 Copynumber: 4.2 Consensus size: 22
1814116 GTATGCATCA
*
1814126 ATGCACATTCAAGGAATGCATCG
1 ATGCACATTCAAGG-ATGTATCG
*
1814149 GTGCATC-TTCAA-GATGTATCG
1 ATGCA-CATTCAAGGATGTATCG
* *
1814170 ATGCACATTCAAAGGGATGAATTG
1 ATGCACATTC-AA-GGATGTATCG
1814194 ATGCACTATTC-A--ATGTATCG
1 ATGCAC-ATTCAAGGATGTATCG
1814214 ATGCA
1 ATGCA
1814219 TTATGCACAA
Statistics
Matches: 57, Mismatches: 7, Indels: 15
0.72 0.09 0.19
Matches are distributed among these distances:
20 12 0.21
21 14 0.25
22 3 0.05
23 10 0.18
24 14 0.25
25 4 0.07
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (22 bp):
ATGCACATTCAAGGATGTATCG
Found at i:1819734 original size:10 final size:10
Alignment explanation
Indices: 1819719--1819748 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
1819709 CTTGATTCTA
1819719 GTTTCTTGTT
1 GTTTCTTGTT
1819729 GTTTCTTGTT
1 GTTTCTTGTT
1819739 GTTTCTTGTT
1 GTTTCTTGTT
1819749 ATTGATCAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.00, C:0.10, G:0.20, T:0.70
Consensus pattern (10 bp):
GTTTCTTGTT
Found at i:1819924 original size:19 final size:19
Alignment explanation
Indices: 1819900--1819947 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
1819890 AGGGCTAGTG
1819900 CATCGGTGCACTAAGAGTA
1 CATCGGTGCACTAAGAGTA
*
1819919 CATCGGTGCACTAAGAGTG
1 CATCGGTGCACTAAGAGTA
*
1819938 CATCGATGCA
1 CATCGGTGCA
1819948 TAAAATGCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.21
Consensus pattern (19 bp):
CATCGGTGCACTAAGAGTA
Found at i:1820074 original size:72 final size:71
Alignment explanation
Indices: 1819952--1820093 Score: 189
Period size: 72 Copynumber: 2.0 Consensus size: 71
1819942 GATGCATAAA
** * * * *
1819952 ATGCATTCGATGTTTTAAAATAGTCTGAGTGTATCGATGCTTGGCTTGTGCATTGATGTATAAAA
1 ATGCATTCGATGTTTTAAAATACCCTGAGTGCATCGATGCATGGCTTGTGCATCGATGCATAAAA
1820017 TGCATT
66 TGCATT
1820023 ATGCATTCGATGTTTTCATAAA-ACCCTGAGTGCATCGATGCATGG-TATGTGCATCGATGCATA
1 ATGCATTCGATGTTTT-A-AAATACCCTGAGTGCATCGATGCATGGCT-TGTGCATCGATGCATA
1820086 AAATGCAT
63 AAATGCAT
1820094 ACGATGTTCA
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
71 17 0.27
72 42 0.68
73 3 0.05
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (71 bp):
ATGCATTCGATGTTTTAAAATACCCTGAGTGCATCGATGCATGGCTTGTGCATCGATGCATAAAA
TGCATT
Found at i:1822202 original size:16 final size:16
Alignment explanation
Indices: 1822181--1822215 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
1822171 AAAGTTCGAT
1822181 GAGCTTAACGAGCATC
1 GAGCTTAACGAGCATC
1822197 GAGCTTAACGAGCATC
1 GAGCTTAACGAGCATC
1822213 GAG
1 GAG
1822216 TAGAGCAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.31, C:0.23, G:0.29, T:0.17
Consensus pattern (16 bp):
GAGCTTAACGAGCATC
Found at i:1825276 original size:45 final size:45
Alignment explanation
Indices: 1825212--1825298 Score: 147
Period size: 45 Copynumber: 1.9 Consensus size: 45
1825202 TCTTCATTCC
* * *
1825212 CGTCTCGGAAATAGGTTTAATCTCTCTCTCTCTCTTTCTCTCTCT
1 CGTCTCGGAAAGAGGTTTAATCACTCTCTCTCTCTCTCTCTCTCT
1825257 CGTCTCGGAAAGAGGTTTAATCACTCTCTCTCTCTCTCTCTC
1 CGTCTCGGAAAGAGGTTTAATCACTCTCTCTCTCTCTCTCTC
1825299 GTCGAAGCAT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.15, C:0.32, G:0.13, T:0.40
Consensus pattern (45 bp):
CGTCTCGGAAAGAGGTTTAATCACTCTCTCTCTCTCTCTCTCTCT
Found at i:1828099 original size:26 final size:26
Alignment explanation
Indices: 1828032--1828092 Score: 104
Period size: 26 Copynumber: 2.3 Consensus size: 26
1828022 CTAAATCACT
* *
1828032 TTCTAGAAGCTGCTAACTGGACCGTC
1 TTCTAGAAGCTGCTGACTGGACCGCC
1828058 TTCTAGAAGCTGCTGACTGGACCGCC
1 TTCTAGAAGCTGCTGACTGGACCGCC
1828084 TTCTAGAAG
1 TTCTAGAAG
1828093 TTACTGATTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (26 bp):
TTCTAGAAGCTGCTGACTGGACCGCC
Found at i:1830053 original size:14 final size:17
Alignment explanation
Indices: 1830010--1830046 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
1830000 AGTCAAATAC
1830010 TTAATC-ATCAAAAATTA
1 TTAATCTAT-AAAAATTA
1830027 TTAATCTATAAAAATTA
1 TTAATCTATAAAAATTA
1830044 TTA
1 TTA
1830047 CTTAAAACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.89
18 2 0.11
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (17 bp):
TTAATCTATAAAAATTA
Found at i:1835452 original size:60 final size:60
Alignment explanation
Indices: 1835340--1835454 Score: 153
Period size: 60 Copynumber: 1.9 Consensus size: 60
1835330 TAGTCGGGTG
* ** *
1835340 ACCATTTTGTAACTTTTAATAGTCGATGGACTCAACAAAACAATATCCTATAGTTGGAGA
1 ACCATTTTATAACTTTTAATAGTCGATGGACAAAACAAAACAACATCCTATAGTTGGAGA
*
1835400 ACCATTTTATAACTTTTAATAGTCGAAT-GACAAAATAAAACAACA-CCGTATAGTT
1 ACCATTTTATAACTTTTAATAGTCG-ATGGACAAAACAAAACAACATCC-TATAGTT
1835455 AGGGGACCGT
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
59 2 0.04
60 44 0.92
61 2 0.04
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.31
Consensus pattern (60 bp):
ACCATTTTATAACTTTTAATAGTCGATGGACAAAACAAAACAACATCCTATAGTTGGAGA
Found at i:1838324 original size:24 final size:24
Alignment explanation
Indices: 1838297--1838343 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
1838287 ATGTAACTGA
*
1838297 ACGGAGAGAGAGAGAGATGAAGAG
1 ACGGAGAGAAAGAGAGATGAAGAG
*
1838321 ACGGTGAGAAAGAGAGATGAAGA
1 ACGGAGAGAAAGAGAGATGAAGA
1838344 AATGAATACC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.47, C:0.04, G:0.43, T:0.06
Consensus pattern (24 bp):
ACGGAGAGAAAGAGAGATGAAGAG
Found at i:1839748 original size:30 final size:30
Alignment explanation
Indices: 1839718--1839777 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 30
1839708 GATGATTGAC
* * *
1839718 CCAAAAA-CTAATTTTATTAAGTTTAGTGA
1 CCAAAAACCTAAATGTATAAAGTTTAGTGA
1839747 CCAAAAACGCTAAATGTATAAAGTTTAGTGA
1 CCAAAAAC-CTAAATGTATAAAGTTTAGTGA
1839778 GAAAATTGAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 7 0.27
31 19 0.73
ACGTcount: A:0.43, C:0.12, G:0.13, T:0.32
Consensus pattern (30 bp):
CCAAAAACCTAAATGTATAAAGTTTAGTGA
Found at i:1841460 original size:14 final size:14
Alignment explanation
Indices: 1841441--1841468 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
1841431 AATATAACAA
1841441 AATTATATAATTAT
1 AATTATATAATTAT
1841455 AATTATATAATTAT
1 AATTATATAATTAT
1841469 TCTTTCACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
AATTATATAATTAT
Found at i:1845800 original size:65 final size:65
Alignment explanation
Indices: 1845666--1845970 Score: 393
Period size: 65 Copynumber: 4.7 Consensus size: 65
1845656 TATCATATAG
* ** * *
1845666 TCACTCCACCTTATGCACCACAAAGGTACACAAGTCTTGTTGAGTGATCTT-TGCAGTATTCAAT
1 TCACTCCACCTCATGCACCACAAAGGTACATGAGTCAT-ATGAGTGAT-TTGTGCAGTATTCAAT
*
1845730 AA
64 TA
* * *
1845732 TCATTCCACCTCATACACCACAAAGGTACATGAGTCATATGAGTGATTTGTGCAGTATTTAATTA
1 TCACTCCACCTCATGCACCACAAAGGTACATGAGTCATATGAGTGATTTGTGCAGTATTCAATTA
* * * *
1845797 TCATTCCATCTCATGCACCACAAAGGTACATGAGTCATATGAGTGATCTGTGTAGTATTCAATTA
1 TCACTCCACCTCATGCACCACAAAGGTACATGAGTCATATGAGTGATTTGTGCAGTATTCAATTA
* * * * *
1845862 TCACTCCAACTCATGCACCACAAAGATACATGAGTC--A-GAGTAATATGTGCAATATTCAATTA
1 TCACTCCACCTCATGCACCACAAAGGTACATGAGTCATATGAGTGATTTGTGCAGTATTCAATTA
*
1845924 TCACTCCACCTCATGCACCACAAAGGTACATAAGTCATATGAGTGAT
1 TCACTCCACCTCATGCACCACAAAGGTACATGAGTCATATGAGTGAT
1845971 CTATACTGGT
Statistics
Matches: 210, Mismatches: 25, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
62 54 0.26
63 1 0.00
64 3 0.01
65 120 0.57
66 32 0.15
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (65 bp):
TCACTCCACCTCATGCACCACAAAGGTACATGAGTCATATGAGTGATTTGTGCAGTATTCAATTA
Found at i:1845965 original size:127 final size:129
Alignment explanation
Indices: 1845666--1845972 Score: 420
Period size: 127 Copynumber: 2.4 Consensus size: 129
1845656 TATCATATAG
* * * * *
1845666 TCACTCCACCTTATGCACCACAAAGGTACACAAGTCTTGTTGAGTGATCTTTGCAGTATTCAATA
1 TCACTCCACCTCATGCACCACAAAGGTACATAAGTCAT-ATGAGTGATCTGTGCAGTATTCAATA
* * * * * * *
1845731 ATCATTCCACCTCATACACCACAAAGGTACATGAGTCATATGAGTGATTTGTGCAGTATTTAATT
65 ATCACTCCAACTCATACACCACAAAGATACATGAGTCA-ATGAGTAATATGTGCAATATTCAATT
1845796 A
129 A
* * * * *
1845797 TCATTCCATCTCATGCACCACAAAGGTACATGAGTCATATGAGTGATCTGTGTAGTATTCAATTA
1 TCACTCCACCTCATGCACCACAAAGGTACATAAGTCATATGAGTGATCTGTGCAGTATTCAATAA
*
1845862 TCACTCCAACTCATGCACCACAAAGATACATGAGTC-A-GAGTAATATGTGCAATATTCAATTA
66 TCACTCCAACTCATACACCACAAAGATACATGAGTCAATGAGTAATATGTGCAATATTCAATTA
1845924 TCACTCCACCTCATGCACCACAAAGGTACATAAGTCATATGAGTGATCT
1 TCACTCCACCTCATGCACCACAAAGGTACATAAGTCATATGAGTGATCT
1845973 ATACTGGTGT
Statistics
Matches: 155, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
127 67 0.43
128 1 0.01
130 55 0.35
131 32 0.21
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (129 bp):
TCACTCCACCTCATGCACCACAAAGGTACATAAGTCATATGAGTGATCTGTGCAGTATTCAATAA
TCACTCCAACTCATACACCACAAAGATACATGAGTCAATGAGTAATATGTGCAATATTCAATTA
Found at i:1849397 original size:2 final size:2
Alignment explanation
Indices: 1849392--1849424 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
1849382 AGATTTCGTG
*
1849392 TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1849425 TGAGATTTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (2 bp):
TA
Found at i:1849971 original size:29 final size:29
Alignment explanation
Indices: 1849934--1850177 Score: 222
Period size: 29 Copynumber: 8.4 Consensus size: 29
1849924 TGCATTCTTA
* *
1849934 ATTCTGCATGAGATTACATCCCCGTCTTG
1 ATTCTGCATGGGATTACATCCCCGTCCTG
*
1849963 ATTCTGCATGGGATTATAT-CCCGTCCTG
1 ATTCTGCATGGGATTACATCCCCGTCCTG
* **
1849991 ATTCTACATGGGATTACATCCTTGTCCTG
1 ATTCTGCATGGGATTACATCCCCGTCCTG
* * * *
1850020 ATTCTGCACGTGAATACATCCCCATCCTG
1 ATTCTGCATGGGATTACATCCCCGTCCTG
* * * *
1850049 ATTCTACAAGGGAGTACATCCCCGTCCTA
1 ATTCTGCATGGGATTACATCCCCGTCCTG
***
1850078 ATTCTGCATGGGATTGA-ATCCTAATCCTG
1 ATTCTGCATGGGATT-ACATCCCCGTCCTG
** ** *
1850107 ATTCTGCATGAAATTACATCTACGTCCCG
1 ATTCTGCATGGGATTACATCCCCGTCCTG
* * * * *
1850136 ATTCTACGTGGGATTAAATCCTCGTCGTG
1 ATTCTGCATGGGATTACATCCCCGTCCTG
1850165 ATTCTGCATGGGA
1 ATTCTGCATGGGA
1850178 ATATATTAGC
Statistics
Matches: 167, Mismatches: 45, Indels: 6
0.77 0.21 0.03
Matches are distributed among these distances:
28 26 0.16
29 140 0.84
30 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (29 bp):
ATTCTGCATGGGATTACATCCCCGTCCTG
Found at i:1850125 original size:87 final size:87
Alignment explanation
Indices: 1849934--1850177 Score: 271
Period size: 87 Copynumber: 2.8 Consensus size: 87
1849924 TGCATTCTTA
* * * * *
1849934 ATTCTGCATGAGATTACATCCCCGTCTTGATTCTGCATGGGATTATAT-CCCGTCCTGATTCTAC
1 ATTCTGCATGAAATTACATCCCCGTCCTGATTCTACATGGGATTAAATCCCCGTCCTGATTCTGC
**
1849998 ATGGGATTACATCCTTGTCCTG
66 ATGGGATTACATCCTAATCCTG
* * * * *
1850020 ATTCTGCACGTG-AA-TACATCCCCATCCTGATTCTACAAGGGAGTACATCCCCGTCCTAATTCT
1 ATTCTGCA--TGAAATTACATCCCCGTCCTGATTCTACATGGGATTAAATCCCCGTCCTGATTCT
1850083 GCATGGGATTGA-ATCCTAATCCTG
64 GCATGGGATT-ACATCCTAATCCTG
** * * * *
1850107 ATTCTGCATGAAATTACATCTACGTCCCGATTCTACGTGGGATTAAATCCTCGTCGTGATTCTGC
1 ATTCTGCATGAAATTACATCCCCGTCCTGATTCTACATGGGATTAAATCCCCGTCCTGATTCTGC
1850172 ATGGGA
66 ATGGGA
1850178 ATATATTAGC
Statistics
Matches: 130, Mismatches: 22, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
85 2 0.02
86 38 0.29
87 87 0.67
88 3 0.02
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (87 bp):
ATTCTGCATGAAATTACATCCCCGTCCTGATTCTACATGGGATTAAATCCCCGTCCTGATTCTGC
ATGGGATTACATCCTAATCCTG
Found at i:1851282 original size:2 final size:2
Alignment explanation
Indices: 1851277--1851304 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1851267 AAAATATTGT
1851277 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1851305 ATGAATCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1858891 original size:10 final size:10
Alignment explanation
Indices: 1858876--1858916 Score: 73
Period size: 10 Copynumber: 4.1 Consensus size: 10
1858866 CATTTAAATG
1858876 ATAAACGAAC
1 ATAAACGAAC
1858886 ATAAACGAAC
1 ATAAACGAAC
*
1858896 ACAAACGAAC
1 ATAAACGAAC
1858906 ATAAACGAAC
1 ATAAACGAAC
1858916 A
1 A
1858917 ACACAAACAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
10 29 1.00
ACGTcount: A:0.61, C:0.22, G:0.10, T:0.07
Consensus pattern (10 bp):
ATAAACGAAC
Found at i:1859196 original size:14 final size:14
Alignment explanation
Indices: 1859177--1859232 Score: 57
Period size: 14 Copynumber: 4.1 Consensus size: 14
1859167 GCCCTCTTTT
1859177 CGAACATAAATGAA
1 CGAACATAAATGAA
1859191 CGAACATAAAT---
1 CGAACATAAATGAA
*
1859202 -GAATATAAATGAA
1 CGAACATAAATGAA
1859215 CGAACATATAATCGAA
1 CGAACATA-AAT-GAA
1859231 CG
1 CG
1859233 TTCACGAACG
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
10 9 0.26
14 17 0.50
15 3 0.09
16 5 0.15
ACGTcount: A:0.54, C:0.14, G:0.14, T:0.18
Consensus pattern (14 bp):
CGAACATAAATGAA
Found at i:1873236 original size:13 final size:13
Alignment explanation
Indices: 1873203--1873244 Score: 57
Period size: 13 Copynumber: 3.1 Consensus size: 13
1873193 CAATCAGAAC
1873203 AAAAAGAGAAAAA
1 AAAAAGAGAAAAA
*
1873216 AAGCAAAGAGAAAAT
1 AA--AAAGAGAAAAA
1873231 AAAAAGAGAAAAA
1 AAAAAGAGAAAAA
1873244 A
1 A
1873245 GGGAAAATTG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
13 13 0.52
15 12 0.48
ACGTcount: A:0.79, C:0.02, G:0.17, T:0.02
Consensus pattern (13 bp):
AAAAAGAGAAAAA
Found at i:1873407 original size:69 final size:69
Alignment explanation
Indices: 1873324--1873461 Score: 201
Period size: 69 Copynumber: 2.0 Consensus size: 69
1873314 GATTCAAACT
* *
1873324 ATGAGATTGATCAAGCACAATCATTTCTGAATCACTGAATCACT-TCACTC-AATGATCATA-AG
1 ATGAAATTGATCAAGCACAATCATTTATGAATCACTGAATCACTCT-ACTCGAAT-ATCATAGA-
1873386 GCATCAA
63 GCATCAA
*
1873393 ATGAAATTGATCAAGCATAATCATTTATGAATCACTGAATCACTCTACTCGAATATCATAGAGCA
1 ATGAAATTGATCAAGCACAATCATTTATGAATCACTGAATCACTCTACTCGAATATCATAGAGCA
1873458 TCAA
66 TCAA
1873462 GAGAGATACA
Statistics
Matches: 63, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
69 58 0.92
70 5 0.08
ACGTcount: A:0.39, C:0.20, G:0.12, T:0.28
Consensus pattern (69 bp):
ATGAAATTGATCAAGCACAATCATTTATGAATCACTGAATCACTCTACTCGAATATCATAGAGCA
TCAA
Found at i:1874423 original size:32 final size:31
Alignment explanation
Indices: 1874386--1874500 Score: 113
Period size: 32 Copynumber: 3.6 Consensus size: 31
1874376 GGAACAATGA
*
1874386 GGGCATCTTTGAAGATTCAACATCAAATGCTG
1 GGGCATCTTTG-AGATTCAACATCAAATGTTG
* * * *
1874418 GGGCATTTTTTATATTTAACATCAAATGTTG
1 GGGCATCTTTGAGATTCAACATCAAATGTTG
* * *
1874449 GGGCATTTTTTGAGATTCAACATCGAATATTG
1 GGGCA-TCTTTGAGATTCAACATCAAATGTTG
* *
1874481 GGCCATCTTTGGGAATTCAA
1 GGGCATCTTTGAG-ATTCAA
1874501 TATCCTGATG
Statistics
Matches: 68, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
31 28 0.41
32 40 0.59
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.36
Consensus pattern (31 bp):
GGGCATCTTTGAGATTCAACATCAAATGTTG
Found at i:1875112 original size:43 final size:43
Alignment explanation
Indices: 1875043--1875158 Score: 205
Period size: 43 Copynumber: 2.7 Consensus size: 43
1875033 GGGCCATCTG
* *
1875043 CGATGTCAACCCCACGACGGAGGATATCGTACCCACACATCCA
1 CGATTTCAACTCCACGACGGAGGATATCGTACCCACACATCCA
*
1875086 CGATTTCAACTCCACGACGGAAGATATCGTACCCACACATCCA
1 CGATTTCAACTCCACGACGGAGGATATCGTACCCACACATCCA
1875129 CGATTTCAACTCCACGACGGAGGATATCGT
1 CGATTTCAACTCCACGACGGAGGATATCGT
1875159 GCCATTTGAA
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 69 1.00
ACGTcount: A:0.30, C:0.34, G:0.18, T:0.18
Consensus pattern (43 bp):
CGATTTCAACTCCACGACGGAGGATATCGTACCCACACATCCA
Found at i:1875387 original size:106 final size:106
Alignment explanation
Indices: 1875207--1875453 Score: 372
Period size: 106 Copynumber: 2.3 Consensus size: 106
1875197 AATTTCATAG
* *
1875207 CCAATTTCAACTTCACAGCGAAGAATATTGGACTCGAGACAACACAAGTTCAACTTCACAGCGAA
1 CCAATTTCAACTTCACATCGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAGCGAA
* *
1875272 GGGATGGCTGGTTGTCAACAAACAATTTCGT-AGTTTCAAAA
66 GGGACGGCTGGTTGTCAACAAACAATTTC-TCAGTTCCAAAA
1875313 CCAATTTCAACTTCACATCGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAGCGAA
1 CCAATTTCAACTTCACATCGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAGCGAA
* * * *
1875378 GGGACGGCTGGTTGTCAATAAATAATTTCTCAGTTCCAGAG
66 GGGACGGCTGGTTGTCAACAAACAATTTCTCAGTTCCAAAA
* *
1875419 CCAATTTCAACTTCACGGT-GGAGGATATTGGACTC
1 CCAATTTCAACTTCAC-ATCGAAGGATATTGGACTC
1875454 AGAACAATAC
Statistics
Matches: 129, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
105 1 0.01
106 127 0.98
107 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (106 bp):
CCAATTTCAACTTCACATCGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAGCGAA
GGGACGGCTGGTTGTCAACAAACAATTTCTCAGTTCCAAAA
Found at i:1875778 original size:102 final size:102
Alignment explanation
Indices: 1875600--1875786 Score: 252
Period size: 102 Copynumber: 1.8 Consensus size: 102
1875590 GACAATTTCC
* * *
1875600 AAGTTTTATCTCTCTTGAGACAGTTTCCCTTGAAACAAAATCTTTGAATATCTTTTCCTTGAAAC
1 AAGTTTTATCTCTCTTGAGACAGTTTCCCTTGAAACAAAATCATTGAATAACTTTCCCTTGAAAC
1875665 AAATTTCGTCTCCCTTGAGACATTTTCTTTTGGAACT
66 AAATTTCGTCTCCCTTGAGACATTTTCTTTTGGAACT
* * *
1875702 AAGTTTTGTCTCTCTTGAGATAGTTTCTCTTGAAACATAAA-CATTGAA-AACATTTCCCTTGAA
1 AAGTTTTATCTCTCTTGAGACAGTTTCCCTTGAAACA-AAATCATTGAATAAC-TTTCCCTTGAA
** * *
1875765 ATGAATTTTGTCTCTCTTGAGA
64 ACAAATTTCGTCTCCCTTGAGA
1875787 TAGTTTCCCT
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
101 2 0.03
102 68 0.93
103 3 0.04
ACGTcount: A:0.28, C:0.19, G:0.13, T:0.41
Consensus pattern (102 bp):
AAGTTTTATCTCTCTTGAGACAGTTTCCCTTGAAACAAAATCATTGAATAACTTTCCCTTGAAAC
AAATTTCGTCTCCCTTGAGACATTTTCTTTTGGAACT
Found at i:1875800 original size:15 final size:15
Alignment explanation
Indices: 1875780--1875814 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
1875770 TTTTGTCTCT
*
1875780 CTTGAGATAGTTTCC
1 CTTGAGACAGTTTCC
*
1875795 CTTGAGACAGTTTCT
1 CTTGAGACAGTTTCC
1875810 CTTGA
1 CTTGA
1875815 AGCATATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.40
Consensus pattern (15 bp):
CTTGAGACAGTTTCC
Found at i:1876023 original size:35 final size:36
Alignment explanation
Indices: 1875959--1876046 Score: 135
Period size: 35 Copynumber: 2.4 Consensus size: 36
1875949 TTGAATACAA
1875959 TTTCTCTTGAAACACAAAAAAAAAAACCTTTGAA-ATTG
1 TTTCTCTTGAAACAC--AAAAAAAAACCTTTGAAGA-TG
1875997 TTTCTCTTGAAACAC-AAAAAAAACCTTTGAAGATG
1 TTTCTCTTGAAACACAAAAAAAAACCTTTGAAGATG
1876032 TTTCTCTTGAAACAC
1 TTTCTCTTGAAACAC
1876047 CAAACCCTCA
Statistics
Matches: 49, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
35 33 0.67
36 1 0.02
38 15 0.31
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.31
Consensus pattern (36 bp):
TTTCTCTTGAAACACAAAAAAAAACCTTTGAAGATG
Found at i:1877472 original size:27 final size:27
Alignment explanation
Indices: 1877434--1877500 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 27
1877424 TTTTATGGAA
* * *
1877434 TTTATTTTTTTATGTCTTTTATTT-TAT
1 TTTATTTATTTATGTCGTTTCTTTAT-T
*
1877461 TTTATTTATTTATTTCGTTTCTTTATT
1 TTTATTTATTTATGTCGTTTCTTTATT
1877488 TTTATTTAATTTA
1 TTTATTT-ATTTA
1877501 CTTGTTATCG
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
27 28 0.82
28 6 0.18
ACGTcount: A:0.18, C:0.04, G:0.03, T:0.75
Consensus pattern (27 bp):
TTTATTTATTTATGTCGTTTCTTTATT
Found at i:1880497 original size:20 final size:20
Alignment explanation
Indices: 1880468--1880505 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
1880458 TTTGGTTCAC
*
1880468 GGAATGTAAGATTACCAGTG
1 GGAATATAAGATTACCAGTG
1880488 GGAATATAAGATTACCAG
1 GGAATATAAGATTACCAG
1880506 GGAATAGGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.11, G:0.26, T:0.24
Consensus pattern (20 bp):
GGAATATAAGATTACCAGTG
Found at i:1880510 original size:18 final size:19
Alignment explanation
Indices: 1880468--1880511 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
1880458 TTTGGTTCAC
*
1880468 GGAATGTAAGATTACCAGTG
1 GGAATATAAGATTACCAG-G
1880488 GGAATATAAGATTACCA-G
1 GGAATATAAGATTACCAGG
1880506 GGAATA
1 GGAATA
1880512 GGATTATTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.30
20 16 0.70
ACGTcount: A:0.41, C:0.09, G:0.27, T:0.23
Consensus pattern (19 bp):
GGAATATAAGATTACCAGG
Found at i:1883798 original size:2 final size:2
Alignment explanation
Indices: 1883791--1883824 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
1883781 TATTTTACAA
1883791 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1883825 GTTAATATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1884614 original size:25 final size:25
Alignment explanation
Indices: 1884585--1884655 Score: 72
Period size: 29 Copynumber: 2.7 Consensus size: 25
1884575 ATTAGAAAAA
1884585 AATAAATTATAAAAAGACCCACAAT
1 AATAAATTATAAAAAGACCCACAAT
* *
1884610 AATAAATATTAAAAAAATAAACCCACAAT
1 AAT-AA-ATT-ATAAAA-AGACCCACAAT
1884639 AATAAA-TATTAAAAAGA
1 AATAAATTA-TAAAAAGA
1884656 TAAGCTCATA
Statistics
Matches: 37, Mismatches: 4, Indels: 10
0.73 0.08 0.20
Matches are distributed among these distances:
25 6 0.16
26 7 0.19
27 4 0.11
28 7 0.19
29 13 0.35
ACGTcount: A:0.65, C:0.11, G:0.03, T:0.21
Consensus pattern (25 bp):
AATAAATTATAAAAAGACCCACAAT
Found at i:1884676 original size:29 final size:29
Alignment explanation
Indices: 1884601--1884678 Score: 120
Period size: 29 Copynumber: 2.7 Consensus size: 29
1884591 TTATAAAAAG
1884601 ACCCACAATAATAAATATTAAAAAAATAA
1 ACCCACAATAATAAATATTAAAAAAATAA
*
1884630 ACCCACAATAATAAATATTAAAAAGATAA
1 ACCCACAATAATAAATATTAAAAAAATAA
* * *
1884659 GCTCATAATAATAAATATTA
1 ACCCACAATAATAAATATTA
1884679 GGGAAAATTG
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.60, C:0.13, G:0.03, T:0.24
Consensus pattern (29 bp):
ACCCACAATAATAAATATTAAAAAAATAA
Found at i:1884873 original size:15 final size:16
Alignment explanation
Indices: 1884840--1884878 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
1884830 TGTGCAAATC
*
1884840 CGGGTACCCAGATTTT
1 CGGGTACCCAGATTAT
1884856 CGGGTACCC-GATTAT
1 CGGGTACCCAGATTAT
*
1884871 CGGATACC
1 CGGGTACC
1884879 TGCAACATCC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.21, C:0.28, G:0.26, T:0.26
Consensus pattern (16 bp):
CGGGTACCCAGATTAT
Found at i:1887273 original size:30 final size:30
Alignment explanation
Indices: 1887228--1887311 Score: 100
Period size: 30 Copynumber: 2.8 Consensus size: 30
1887218 GTAATTTTTC
* *
1887228 CAAAA-TTATATTTTGGTCTCTAAACTTTTA
1 CAAAATTTATAATTTGGTCACTAAAC-TTTA
* *
1887258 -AAAATTTATACTTTGGTCACCAAACTTTA
1 CAAAATTTATAATTTGGTCACTAAACTTTA
*
1887287 CCAAATTTATAATTTGGTCACTAAA
1 CAAAATTTATAATTTGGTCACTAAA
1887312 TAAATCTATT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
29 8 0.17
30 38 0.83
ACGTcount: A:0.37, C:0.15, G:0.07, T:0.40
Consensus pattern (30 bp):
CAAAATTTATAATTTGGTCACTAAACTTTA
Found at i:1889300 original size:49 final size:49
Alignment explanation
Indices: 1889229--1889806 Score: 807
Period size: 49 Copynumber: 12.0 Consensus size: 49
1889219 GAATACTATG
* * *
1889229 AGTGACACCTTTTATGCTGAAATGCACCGTTATGCATTTAACTTTCATT
1 AGTGGCACCTTTTATGCCGAAATGCACCGTTATGCATTTAATTTTCATT
* * * *
1889278 AGTGGCACATTTTACGTCGAAATGCACCTTTATGCATTTAATTTTCATT
1 AGTGGCACCTTTTATGCCGAAATGCACCGTTATGCATTTAATTTTCATT
* * * *
1889327 AGTGGCACCTTTTACGTCAAAATGCACCTTTATGCATTTAATTTTCATT
1 AGTGGCACCTTTTATGCCGAAATGCACCGTTATGCATTTAATTTTCATT
* * * * * * *
1889376 AGTGGCACATTTTACGTCAAAATGCACCTTTATACATTTAATTTTTATT
1 AGTGGCACCTTTTATGCCGAAATGCACCGTTATGCATTTAATTTTCATT
* *
1889425 AGTGGCACCTTTTATGTCGAAATGCGCCGTTATGCATTTAATTTTCATT
1 AGTGGCACCTTTTATGCCGAAATGCACCGTTATGCATTTAATTTTCATT
* * * * * *
1889474 AATGACACCTTTTATGTCGAAATGCGCCATTATGCATTAAATTTTCATT
1 AGTGGCACCTTTTATGCCGAAATGCACCGTTATGCATTTAATTTTCATT
* **
1889523 AGTGGAACCTTTTATGCCGAAATGCGTCGTTATGCATTTAATTTTCATT
1 AGTGGCACCTTTTATGCCGAAATGCACCGTTATGCATTTAATTTTCATT
1889572 AGTGGCACCTTTTATGCCGAAATGCACCGTTATGCATTTAATTTTCATT
1 AGTGGCACCTTTTATGCCGAAATGCACCGTTATGCATTTAATTTTCATT
1889621 AGTGGCACCTTTTATGCCGAAATGCACCGTTATGCATTTAATTTTCATT
1 AGTGGCACCTTTTATGCCGAAATGCACCGTTATGCATTTAATTTTCATT
*
1889670 AGTGGCAACTTTTATGCCGAAATGCACCGTTATGCATTTAATTTTCATT
1 AGTGGCACCTTTTATGCCGAAATGCACCGTTATGCATTTAATTTTCATT
1889719 AGT-G---------TGCCGAAATGCACCGTTATGCATTTAATTTTCATT
1 AGTGGCACCTTTTATGCCGAAATGCACCGTTATGCATTTAATTTTCATT
*
1889758 GGTGGCACCTTTTATGCCGAAATGCACCGTTATGCATTTAATTTTCATT
1 AGTGGCACCTTTTATGCCGAAATGCACCGTTATGCATTTAATTTTCATT
1889807 CATTTTAGAG
Statistics
Matches: 484, Mismatches: 35, Indels: 20
0.90 0.06 0.04
Matches are distributed among these distances:
39 37 0.08
40 1 0.00
48 1 0.00
49 445 0.92
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.40
Consensus pattern (49 bp):
AGTGGCACCTTTTATGCCGAAATGCACCGTTATGCATTTAATTTTCATT
Found at i:1889752 original size:88 final size:88
Alignment explanation
Indices: 1889635--1889806 Score: 326
Period size: 88 Copynumber: 2.0 Consensus size: 88
1889625 GCACCTTTTA
1889635 TGCCGAAATGCACCGTTATGCATTTAATTTTCATTAGTGGCAACTTTTATGCCGAAATGCACCGT
1 TGCCGAAATGCACCGTTATGCATTTAATTTTCATTAGTGGCAACTTTTATGCCGAAATGCACCGT
1889700 TATGCATTTAATTTTCATTAGTG
66 TATGCATTTAATTTTCATTAGTG
* *
1889723 TGCCGAAATGCACCGTTATGCATTTAATTTTCATTGGTGGCACCTTTTATGCCGAAATGCACCGT
1 TGCCGAAATGCACCGTTATGCATTTAATTTTCATTAGTGGCAACTTTTATGCCGAAATGCACCGT
1889788 TATGCATTTAATTTTCATT
66 TATGCATTTAATTTTCATT
1889807 CATTTTAGAG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
88 82 1.00
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (88 bp):
TGCCGAAATGCACCGTTATGCATTTAATTTTCATTAGTGGCAACTTTTATGCCGAAATGCACCGT
TATGCATTTAATTTTCATTAGTG
Found at i:1890188 original size:19 final size:19
Alignment explanation
Indices: 1890164--1890212 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
1890154 TCTATACTAT
1890164 GGTATCGATACTCCCTTTC
1 GGTATCGATACTCCCTTTC
1890183 GGTATCGATACTCCCTTTC
1 GGTATCGATACTCCCTTTC
*
1890202 AGTATCGATAC
1 GGTATCGATAC
1890213 CATTTATGCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.20, C:0.29, G:0.16, T:0.35
Consensus pattern (19 bp):
GGTATCGATACTCCCTTTC
Found at i:1891350 original size:18 final size:19
Alignment explanation
Indices: 1891315--1891351 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
1891305 TACGGAATGT
1891315 AAGATTACCAGTGGGAATAA
1 AAGATTACCAG-GGGAATAA
1891335 AAGATTACCA-GGGAATA
1 AAGATTACCAGGGGAATA
1891352 GGATTACTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
20 10 0.59
ACGTcount: A:0.46, C:0.11, G:0.24, T:0.19
Consensus pattern (19 bp):
AAGATTACCAGGGGAATAA
Found at i:1891518 original size:15 final size:15
Alignment explanation
Indices: 1891500--1891530 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1891490 AAATTCTAAA
1891500 TATTTAAATAAAAAT
1 TATTTAAATAAAAAT
*
1891515 TATTTATATAAAAAT
1 TATTTAAATAAAAAT
1891530 T
1 T
1891531 CTATCTATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TATTTAAATAAAAAT
Found at i:1898293 original size:21 final size:21
Alignment explanation
Indices: 1898242--1898294 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
1898232 ATTATGACTA
* *
1898242 TCGCAATGCAATTTTCTAATT
1 TCGCAATGCGATTTTCCAATT
**
1898263 TCGCGTTGCGATTTTCCCAA-T
1 TCGCAATGCGATTTT-CCAATT
1898284 TCGCAATGCGA
1 TCGCAATGCGA
1898295 ATAAGTAAAT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
21 22 0.88
22 3 0.12
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.36
Consensus pattern (21 bp):
TCGCAATGCGATTTTCCAATT
Found at i:1898309 original size:20 final size:21
Alignment explanation
Indices: 1898284--1898335 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
1898274 TTTTCCCAAT
*
1898284 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
1898304 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
1898325 TCGCAATGCGA
1 TCGCAATGCGA
1898336 TACTGACTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:1898349 original size:20 final size:20
Alignment explanation
Indices: 1898324--1898438 Score: 133
Period size: 20 Copynumber: 5.7 Consensus size: 20
1898314 AATTGGGAAA
*
1898324 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
1898344 ATCGCAACGCGATAAT-ACAAA
1 ATCGCAACGCGATACTGAC--T
1898365 ATCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
1898385 TTCGCAACGCGATACTTACT
1 ATCGCAACGCGATACTGACT
*
1898405 TTCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
1898425 TTCGCAACGAGATA
1 ATCGCAACGCGATA
1898439 ATACATAATC
Statistics
Matches: 83, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
19 2 0.02
20 64 0.77
21 15 0.18
22 2 0.02
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:1898421 original size:40 final size:40
Alignment explanation
Indices: 1898322--1898458 Score: 177
Period size: 41 Copynumber: 3.4 Consensus size: 40
1898312 CGAATTGGGA
* *
1898322 AAATCGCAATGCGATACTGACTATCGCAACGCGATAATAC
1 AAATCGCAACGCGATACTGACTTTCGCAACGCGATAATAC
*
1898362 AAAATCGCAACGCGATACTGACTTTCGCAACGCGATACTTAC
1 -AAATCGCAACGCGATACTGACTTTCGCAACGCGATA-ATAC
** *
1898404 -TTTCGCAACGCGATACTGACTTTCGCAACGAGATAATAC
1 AAATCGCAACGCGATACTGACTTTCGCAACGCGATAATAC
*
1898443 ATAATCGCAATGCGAT
1 A-AATCGCAACGCGAT
1898459 TTTCAAAGCG
Statistics
Matches: 83, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
39 3 0.04
40 32 0.39
41 45 0.54
42 3 0.04
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.23
Consensus pattern (40 bp):
AAATCGCAACGCGATACTGACTTTCGCAACGCGATAATAC
Found at i:1898941 original size:20 final size:20
Alignment explanation
Indices: 1898912--1898955 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
1898902 GCGATTTTAG
1898912 TTTCGCGTTGCGATAGTCAT
1 TTTCGCGTTGCGATAGTCAT
* **
1898932 TTTCGTGTTGCGATTTTCAT
1 TTTCGCGTTGCGATAGTCAT
1898952 TTTC
1 TTTC
1898956 AGAAACTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.11, C:0.18, G:0.20, T:0.50
Consensus pattern (20 bp):
TTTCGCGTTGCGATAGTCAT
Found at i:1900783 original size:19 final size:20
Alignment explanation
Indices: 1900729--1900795 Score: 64
Period size: 20 Copynumber: 3.4 Consensus size: 20
1900719 TAGTTTACTT
* *
1900729 TCGCAACACGAAAATGACTA
1 TCGCAACGCGGAAATGACTA
*
1900749 TCGCAACGCGGAAATGGCTA
1 TCGCAACGCGGAAATGACTA
* * **
1900769 TCGTAATGC-GAAATGAAAA
1 TCGCAACGCGGAAATGACTA
1900788 TCGCAACG
1 TCGCAACG
1900796 ACAAAATCGC
Statistics
Matches: 37, Mismatches: 10, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
19 13 0.35
20 24 0.65
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.16
Consensus pattern (20 bp):
TCGCAACGCGGAAATGACTA
Found at i:1900815 original size:33 final size:34
Alignment explanation
Indices: 1900768--1900833 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 34
1900758 GGAAATGGCT
*
1900768 ATCGTAATGCGAAATGAAAATCGCAACG-ACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGCACAAA
1900801 ATCGCAATGCGAAATGAAAATCGCAACGCACAA
1 ATCGCAATGCGAAATGAAAATCGCAACGCACAA
1900834 TGAAAATCGC
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 27 0.87
34 4 0.13
ACGTcount: A:0.47, C:0.21, G:0.18, T:0.14
Consensus pattern (34 bp):
ATCGCAATGCGAAATGAAAATCGCAACGCACAAA
Found at i:1900822 original size:19 final size:19
Alignment explanation
Indices: 1900768--1900850 Score: 88
Period size: 19 Copynumber: 4.6 Consensus size: 19
1900758 GGAAATGGCT
*
1900768 ATCGTAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
1900787 ATCGCAA--CG--A-CAAA
1 ATCGCAATGCGAAATGAAA
1900801 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
1900820 ATCGCAACGC-ACAATGAAA
1 ATCGCAATGCGA-AATGAAA
1900839 ATCGCAATGCGA
1 ATCGCAATGCGA
1900851 TTTGTGTTTC
Statistics
Matches: 52, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
14 10 0.19
15 1 0.02
16 2 0.04
17 2 0.04
18 2 0.04
19 34 0.65
20 1 0.02
ACGTcount: A:0.46, C:0.20, G:0.19, T:0.14
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:1900881 original size:14 final size:14
Alignment explanation
Indices: 1900862--1900920 Score: 64
Period size: 14 Copynumber: 3.9 Consensus size: 14
1900852 TTGTGTTTCG
1900862 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
1900876 CGTTGCGATTTTCATTT
1 CGTTGCGA-TTT--TGT
1900893 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
1900909 CGTTGCGATTTT
1 CGTTGCGATTTT
1900921 CATTTCGCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
14 18 0.47
15 3 0.08
16 4 0.11
17 4 0.11
18 3 0.08
19 6 0.16
ACGTcount: A:0.10, C:0.17, G:0.24, T:0.49
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:1900894 original size:33 final size:33
Alignment explanation
Indices: 1900857--1900939 Score: 157
Period size: 33 Copynumber: 2.5 Consensus size: 33
1900847 GCGATTTGTG
*
1900857 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
1 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
1900890 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
1 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
1900923 TTTCGCATTGCGATTTT
1 TTTCGCATTGCGATTTT
1900940 CATTTCGCGT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 49 1.00
ACGTcount: A:0.11, C:0.18, G:0.22, T:0.49
Consensus pattern (33 bp):
TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
Found at i:1900902 original size:19 final size:19
Alignment explanation
Indices: 1900878--1900994 Score: 109
Period size: 19 Copynumber: 6.3 Consensus size: 19
1900868 GATTTTGTCG
1900878 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
1900897 TTGCGA-TTT--TGTCG--
1 TTGCGATTTTCATTTCGCA
1900911 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
1900930 TTGCGATTTTCATTTCGCG
1 TTGCGATTTTCATTTCGCA
***
1900949 TTGCGATAGCCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
** *
1900969 TTGCGATAGTCATTTTCGCG
1 TTGCGATTTTCA-TTTCGCA
1900989 TTGCGA
1 TTGCGA
1900995 AAGTAAGTTT
Statistics
Matches: 82, Mismatches: 9, Indels: 13
0.79 0.09 0.12
Matches are distributed among these distances:
14 6 0.07
15 3 0.04
16 4 0.05
17 4 0.05
18 3 0.04
19 36 0.44
20 23 0.28
21 3 0.04
ACGTcount: A:0.15, C:0.21, G:0.21, T:0.43
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:1900974 original size:20 final size:19
Alignment explanation
Indices: 1900920--1900994 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 19
1900910 GTTGCGATTT
**
1900920 TCATTTCGCATTGCGATTT
1 TCATTTCGCATTGCGATAG
*
1900939 TCATTTCGCGTTGCGATAG
1 TCATTTCGCATTGCGATAG
*
1900958 CCATTTCCGCATTGCGATAG
1 TCATTT-CGCATTGCGATAG
*
1900978 TCATTTTCGCGTTGCGA
1 TCA-TTTCGCATTGCGA
1900995 AAGTAAGTTT
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
19 21 0.45
20 23 0.49
21 3 0.06
ACGTcount: A:0.16, C:0.24, G:0.21, T:0.39
Consensus pattern (19 bp):
TCATTTCGCATTGCGATAG
Found at i:1901005 original size:20 final size:19
Alignment explanation
Indices: 1900941--1901020 Score: 70
Period size: 20 Copynumber: 4.1 Consensus size: 19
1900931 TGCGATTTTC
* **
1900941 ATTTCGCGTTGCGATAGCC
1 ATTTCGCGTTGCGAAAGTA
* *
1900960 ATTTCCGCATTGCGATAGTCA
1 ATTT-CGCGTTGCGAAAGT-A
*
1900981 TTTTCGCGTTGCGAAAGTA
1 ATTTCGCGTTGCGAAAGTA
*
1901000 AGTTTCGTGTTGCGAAAGTA
1 A-TTTCGCGTTGCGAAAGTA
1901020 A
1 A
1901021 ACTATTCTTC
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
19 5 0.10
20 42 0.84
21 3 0.06
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.34
Consensus pattern (19 bp):
ATTTCGCGTTGCGAAAGTA
Found at i:1901448 original size:41 final size:42
Alignment explanation
Indices: 1901357--1901448 Score: 125
Period size: 42 Copynumber: 2.2 Consensus size: 42
1901347 GCCCGACTCA
*
1901357 CCTGTCATCCCTCAAGAGTCCCATCCAATCGTTCAAGAGGAC
1 CCTGTCATCCCTCAAGAGTCCCACCCAATCGTTCAAGAGGAC
* * *
1901399 CCTATCATCCCTCAAGAGTCCCCCCCACT-GTTCAAGAGG-C
1 CCTGTCATCCCTCAAGAGTCCCACCCAATCGTTCAAGAGGAC
1901439 CACTGTCATC
1 C-CTGTCATC
1901449 GTTGAAGAGG
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
40 2 0.05
41 17 0.39
42 25 0.57
ACGTcount: A:0.24, C:0.39, G:0.15, T:0.22
Consensus pattern (42 bp):
CCTGTCATCCCTCAAGAGTCCCACCCAATCGTTCAAGAGGAC
Found at i:1902891 original size:14 final size:14
Alignment explanation
Indices: 1902857--1902895 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
1902847 TTGATTGTTT
1902857 AATTGATTTGTAAA
1 AATTGATTTGTAAA
*
1902871 AAATGATTTGTAAA
1 AATTGATTTGTAAA
**
1902885 TGTTGATTTGT
1 AATTGATTTGT
1902896 TTAATTGATG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.46
Consensus pattern (14 bp):
AATTGATTTGTAAA
Found at i:1905402 original size:12 final size:12
Alignment explanation
Indices: 1905385--1905409 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1905375 TCTTCGTGGA
1905385 CTTTTTCTTCTT
1 CTTTTTCTTCTT
1905397 CTTTTTCTTCTT
1 CTTTTTCTTCTT
1905409 C
1 C
1905410 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:1906409 original size:20 final size:20
Alignment explanation
Indices: 1906379--1906493 Score: 115
Period size: 20 Copynumber: 5.7 Consensus size: 20
1906369 GATTATGTAT
*
1906379 TATCTCGTTGCGATAGTCAG
1 TATCGCGTTGCGATAGTCAG
* *
1906399 AATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGATAGTCAG
* *
1906419 AATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGATAGTCAG
* * *
1906439 TATCGTGTTGCGATTTTGT-AT
1 TATCGCGTTGCGA--TAGTCAG
*
1906460 TATCGCGTTGCAATAGTCAG
1 TATCGCGTTGCGATAGTCAG
*
1906480 TATCGCATTGCGAT
1 TATCGCGTTGCGAT
1906494 TTTCCAAATT
Statistics
Matches: 78, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
19 3 0.04
20 61 0.78
21 12 0.15
22 2 0.03
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.32
Consensus pattern (20 bp):
TATCGCGTTGCGATAGTCAG
Found at i:1906496 original size:41 final size:41
Alignment explanation
Indices: 1906359--1906494 Score: 143
Period size: 41 Copynumber: 3.3 Consensus size: 41
1906349 AACTTTGAAA
* * *
1906359 ATCGCATTGCGATTATGTATTATCTCGTTGCGATAGTCAGA
1 ATCGCATTGCGATTATGTATTATCGCGTTGCAATAGTCAGT
* * **
1906400 ATCGCGTTGCGA--AAGTCAGAATCGCGTTGCGAA-AGTCAGT
1 ATCGCATTGCGATTATGT-ATTATCGCGTTGC-AATAGTCAGT
** *
1906440 ATCGTGTTGCGATTTTGTATTATCGCGTTGCAATAGTCAGT
1 ATCGCATTGCGATTATGTATTATCGCGTTGCAATAGTCAGT
1906481 ATCGCATTGCGATT
1 ATCGCATTGCGATT
1906495 TTCCAAATTC
Statistics
Matches: 76, Mismatches: 14, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
39 3 0.04
40 29 0.38
41 42 0.55
42 2 0.03
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.34
Consensus pattern (41 bp):
ATCGCATTGCGATTATGTATTATCGCGTTGCAATAGTCAGT
Found at i:1906506 original size:21 final size:20
Alignment explanation
Indices: 1906482--1906533 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
1906472 ATAGTCAGTA
*
1906482 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGA-TTTACAAAT
* **
1906503 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACAAAT
1906523 TCGCATTGCGA
1 TCGCATTGCGA
1906534 ATTGGGAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 16 0.62
21 10 0.38
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.38
Consensus pattern (20 bp):
TCGCATTGCGATTTACAAAT
Found at i:1906507 original size:41 final size:41
Alignment explanation
Indices: 1906359--1906513 Score: 118
Period size: 41 Copynumber: 3.8 Consensus size: 41
1906349 AACTTTGAAA
* ** * * * *
1906359 ATCGCATTGCGATTATGTATTATCTCGTTGCGATAGTCAGA
1 ATCGCATTGCGATTTTCAAATATCGCGTTGCGAAAGTCAGT
* *** *
1906400 ATCGCGTTGCGAAAGTCAGA-ATCGCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATTTTCAAATATCGCGTTGCGAAAGTCAGT
** ** *
1906440 ATCGTGTTGCGATTTTGTATTATCGCGTTGC-AATAGTCAGT
1 ATCGCATTGCGATTTTCAAATATCGCGTTGCGAA-AGTCAGT
1906481 ATCGCATTGCGATTTTCCAAAT-TCGCGTTGCGA
1 ATCGCATTGCGATTTT-CAAATATCGCGTTGCGA
1906514 TTTACTTATT
Statistics
Matches: 86, Mismatches: 24, Indels: 7
0.74 0.21 0.06
Matches are distributed among these distances:
40 31 0.36
41 52 0.60
42 3 0.03
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.34
Consensus pattern (41 bp):
ATCGCATTGCGATTTTCAAATATCGCGTTGCGAAAGTCAGT
Found at i:1906575 original size:21 final size:22
Alignment explanation
Indices: 1906523--1906575 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
1906513 ATTTACTTAT
1906523 TCGCATTGCG-AATTGGGAAAA
1 TCGCATTGCGAAATTGGGAAAA
**
1906544 TCGCAACGCGAAATT-GGAAAA
1 TCGCATTGCGAAATTGGGAAAA
1906565 TCGCATTGCGA
1 TCGCATTGCGA
1906576 TAGTCATAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (22 bp):
TCGCATTGCGAAATTGGGAAAA
Found at i:1917632 original size:27 final size:25
Alignment explanation
Indices: 1917573--1917623 Score: 66
Period size: 27 Copynumber: 2.0 Consensus size: 25
1917563 GATTTTATAC
* *
1917573 AATTCTATAAATATTTAATTTATTT
1 AATTATATAAATATTAAATTTATTT
1917598 AATTTATATAAATAATTAAATTTATT
1 AA-TTATATAAAT-ATTAAATTTATT
1917624 ATTAATATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 2 0.09
26 9 0.41
27 11 0.50
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (25 bp):
AATTATATAAATATTAAATTTATTT
Found at i:1917734 original size:31 final size:31
Alignment explanation
Indices: 1917693--1917767 Score: 96
Period size: 31 Copynumber: 2.4 Consensus size: 31
1917683 ATTTTTTAGA
* * *
1917693 ATATGTATAATTAAATTAATATTAAATTTTT
1 ATATGTATAATTAAATCAAAATTAAAGTTTT
* *
1917724 ATTTGTATAATTGAATCAAAATTAAAGTTTT
1 ATATGTATAATTAAATCAAAATTAAAGTTTT
*
1917755 ATAAGTATAATTA
1 ATATGTATAATTA
1917768 TGTCAACTGA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.45, C:0.01, G:0.07, T:0.47
Consensus pattern (31 bp):
ATATGTATAATTAAATCAAAATTAAAGTTTT
Found at i:1919753 original size:3 final size:3
Alignment explanation
Indices: 1919745--1919794 Score: 84
Period size: 3 Copynumber: 16.7 Consensus size: 3
1919735 TACGTCTGTT
1919745 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAAA TAA T-A TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA
1919790 TAA TA
1 TAA TA
1919795 TGGGTAAACT
Statistics
Matches: 45, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
2 2 0.04
3 40 0.89
4 3 0.07
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:1921592 original size:31 final size:31
Alignment explanation
Indices: 1921470--1921579 Score: 193
Period size: 31 Copynumber: 3.5 Consensus size: 31
1921460 GGGTCGAGGG
*
1921470 TTACCTATGTTCTTCGGGACTTATGGACTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
1921501 TTACCTATGTTCTTCGGGACATATGGACTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
*
1921532 TCACCTATGTTCTTCGGGACATATGGACTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
*
1921563 TTACCTAGGTTCTTCGG
1 TTACCTATGTTCTTCGG
1921580 AATCTATAGA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 75 1.00
ACGTcount: A:0.17, C:0.21, G:0.23, T:0.39
Consensus pattern (31 bp):
TTACCTATGTTCTTCGGGACATATGGACTGT
Found at i:1921592 original size:62 final size:62
Alignment explanation
Indices: 1921472--1921592 Score: 190
Period size: 62 Copynumber: 2.0 Consensus size: 62
1921462 GTCGAGGGTT
* * * *
1921472 ACCTATGTTCTTCGGGACTTATGGACTGTTTACCTATGTTCTTCGGGACATATGGACTGTTC
1 ACCTATGTTCTTCGGGACATATGGACTGTTTACCTAGGTTCTTCGGAACATATAGACTGTTC
1921534 ACCTATGTTCTTCGGGACATATGGACTGTTTACCTAGGTTCTTCGGAATC-TATAGACTG
1 ACCTATGTTCTTCGGGACATATGGACTGTTTACCTAGGTTCTTCGGAA-CATATAGACTG
1921593 GTCCTTCGGT
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
62 53 0.98
63 1 0.02
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.37
Consensus pattern (62 bp):
ACCTATGTTCTTCGGGACATATGGACTGTTTACCTAGGTTCTTCGGAACATATAGACTGTTC
Found at i:1922889 original size:7 final size:7
Alignment explanation
Indices: 1922854--1922932 Score: 54
Period size: 7 Copynumber: 10.6 Consensus size: 7
1922844 TACTATTTTA
1922854 TTAATAAT
1 TTAAT-AT
*
1922862 TTAATTT
1 TTAATAT
1922869 TTAATAT
1 TTAATAT
*
1922876 TTTATAT
1 TTAATAT
1922883 TTAATAT
1 TTAATAT
1922890 ATTAAATAT
1 -TT-AATAT
1922899 CTTAATAATT
1 -TTAAT-A-T
*
1922909 ATTTATAT
1 -TTAATAT
1922917 TT-ATAT
1 TTAATAT
1922923 TTAA-AT
1 TTAATAT
1922929 TTAA
1 TTAA
1922933 ATAATTAATT
Statistics
Matches: 59, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
6 12 0.20
7 22 0.37
8 11 0.19
9 9 0.15
10 5 0.08
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.57
Consensus pattern (7 bp):
TTAATAT
Found at i:1923307 original size:24 final size:24
Alignment explanation
Indices: 1923254--1923308 Score: 60
Period size: 24 Copynumber: 2.2 Consensus size: 24
1923244 ACATATTTTG
*
1923254 TTTTAAACAATACTTTGTGTGTGT
1 TTTTAAACAATACTTTGTGTGTCT
1923278 TGTTTACAACAATA-TTT-TGTGTACT
1 T-TTTA-AACAATACTTTGTGTGT-CT
1923303 TTTTAA
1 TTTTAA
1923309 TTTAATTGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
23 1 0.04
24 10 0.37
25 9 0.33
26 7 0.26
ACGTcount: A:0.27, C:0.09, G:0.13, T:0.51
Consensus pattern (24 bp):
TTTTAAACAATACTTTGTGTGTCT
Found at i:1924121 original size:24 final size:24
Alignment explanation
Indices: 1924071--1924121 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
1924061 AATATTTTCT
** *
1924071 AATTTTTAAAAAATTGACAATAGA
1 AATTTTTAAAAAACAGAAAATAGA
1924095 AATTATTTAAAAAACAGAAAATA-A
1 AATT-TTTAAAAAACAGAAAATAGA
1924119 AAT
1 AAT
1924122 AAAAATATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 8 0.35
25 15 0.65
ACGTcount: A:0.61, C:0.04, G:0.06, T:0.29
Consensus pattern (24 bp):
AATTTTTAAAAAACAGAAAATAGA
Found at i:1937655 original size:17 final size:16
Alignment explanation
Indices: 1937633--1937664 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
1937623 CACCAATCAA
1937633 CAGTCAAAGTCCAACGC
1 CAGTCAAAGT-CAACGC
1937650 CAGTCAAAGTCAACG
1 CAGTCAAAGTCAACG
1937665 ACGGTCAACG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.38, C:0.31, G:0.19, T:0.12
Consensus pattern (16 bp):
CAGTCAAAGTCAACGC
Found at i:1937671 original size:16 final size:17
Alignment explanation
Indices: 1937632--1937672 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
1937622 GCACCAATCA
1937632 ACAGTCAAAGTCCAACG
1 ACAGTCAAAGTCCAACG
*
1937649 CCAGTCAAAGT-CAACG
1 ACAGTCAAAGTCCAACG
*
1937665 ACGGTCAA
1 ACAGTCAA
1937673 CGGTGCGGTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
16 11 0.52
17 10 0.48
ACGTcount: A:0.39, C:0.29, G:0.20, T:0.12
Consensus pattern (17 bp):
ACAGTCAAAGTCCAACG
Found at i:1939504 original size:6 final size:6
Alignment explanation
Indices: 1939493--1939521 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
1939483 ACGAACACGC
1939493 TTTTCT TTTTCT TTTTCT TTTT-T TTTTCT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT
1939522 CTCTTCAGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.23
6 17 0.77
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTCT
Found at i:1940018 original size:2 final size:2
Alignment explanation
Indices: 1940011--1940041 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
1940001 ATTATAAATG
1940011 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1940042 CCTTCAATGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:1960907 original size:18 final size:17
Alignment explanation
Indices: 1960881--1960931 Score: 57
Period size: 18 Copynumber: 2.9 Consensus size: 17
1960871 ATATATTTGT
* *
1960881 ATAAGATAGATACAATCA
1 ATAAAATAGATA-AATAA
1960899 ATAAAATAGATAAATAA
1 ATAAAATAGATAAATAA
*
1960916 ATAAAAATAAATAAAT
1 AT-AAAATAGATAAAT
1960932 TTTAGGATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
17 6 0.21
18 23 0.79
ACGTcount: A:0.67, C:0.04, G:0.06, T:0.24
Consensus pattern (17 bp):
ATAAAATAGATAAATAA
Found at i:1963484 original size:20 final size:20
Alignment explanation
Indices: 1963459--1963584 Score: 90
Period size: 20 Copynumber: 5.7 Consensus size: 20
1963449 AGTTATGGCC
1963459 TCCTTTCATGCATTAATGCA
1 TCCTTTCATGCATTAATGCA
1963479 TCCTTTCATGCATTTTAGTTATGGCA
1 TCCTTTCATGCA--TTA---AT-GCA
* * *
1963505 TCATTTCATGCCTCAATGCA
1 TCCTTTCATGCATTAATGCA
* *
1963525 TCATTTCATGCATTTTAGTTTTGGCA
1 TCCTTTCATGCA--TTA---AT-GCA
*
1963551 TCCTTTCATGCCTTAATGCA
1 TCCTTTCATGCATTAATGCA
1963571 TCCTTTCATGCATT
1 TCCTTTCATGCATT
1963585 TTAGTTAGGA
Statistics
Matches: 84, Mismatches: 10, Indels: 24
0.71 0.08 0.20
Matches are distributed among these distances:
20 42 0.50
21 3 0.04
22 5 0.06
24 5 0.06
25 3 0.04
26 26 0.31
ACGTcount: A:0.21, C:0.24, G:0.12, T:0.44
Consensus pattern (20 bp):
TCCTTTCATGCATTAATGCA
Found at i:1963501 original size:46 final size:46
Alignment explanation
Indices: 1963444--1963591 Score: 233
Period size: 46 Copynumber: 3.2 Consensus size: 46
1963434 TTATTCGTTA
* * *
1963444 ATTTCAGTTATGGCCTCCTTTCATGCATTAATGCATCCTTTCATGC
1 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
* * *
1963490 ATTTTAGTTATGGCATCATTTCATGCCTCAATGCATCATTTCATGC
1 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
*
1963536 ATTTTAGTTTTGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
1 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
1963582 ATTTTAGTTA
1 ATTTTAGTTA
1963592 GGAATTCGTT
Statistics
Matches: 91, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 91 1.00
ACGTcount: A:0.21, C:0.22, G:0.13, T:0.44
Consensus pattern (46 bp):
ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
Found at i:1963765 original size:26 final size:26
Alignment explanation
Indices: 1963736--1963793 Score: 116
Period size: 26 Copynumber: 2.2 Consensus size: 26
1963726 TTCATCTTAA
1963736 ATAATCACAATAAATGTACTCACCTG
1 ATAATCACAATAAATGTACTCACCTG
1963762 ATAATCACAATAAATGTACTCACCTG
1 ATAATCACAATAAATGTACTCACCTG
1963788 ATAATC
1 ATAATC
1963794 CCAACTAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.43, C:0.22, G:0.07, T:0.28
Consensus pattern (26 bp):
ATAATCACAATAAATGTACTCACCTG
Found at i:1966110 original size:16 final size:15
Alignment explanation
Indices: 1966071--1966115 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 15
1966061 TTTTAAATTC
1966071 TATTTTAATTTTTAT
1 TATTTTAATTTTTAT
1966086 TATTGTTAATATTTTAT
1 TATT-TTAAT-TTTTAT
1966103 T-TATTTAATTTTT
1 TAT-TTTAATTTTT
1966116 TTAGTATTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
15 8 0.30
16 11 0.41
17 8 0.30
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (15 bp):
TATTTTAATTTTTAT
Found at i:1967974 original size:3 final size:3
Alignment explanation
Indices: 1967966--1968040 Score: 87
Period size: 3 Copynumber: 25.0 Consensus size: 3
1967956 TATCTACTCT
* * * * * * *
1967966 TGA TGA TGA TGA TGA CGA CGA TAA TGA TAA TGA TGA TGA TGA TGG CGG
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
1968014 TGA TGA TGA TGA TGA TGA TGA TGA TGA
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA
1968041 GAGTGAGGAT
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 62 1.00
ACGTcount: A:0.33, C:0.04, G:0.33, T:0.29
Consensus pattern (3 bp):
TGA
Found at i:1968221 original size:26 final size:27
Alignment explanation
Indices: 1968192--1968248 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 27
1968182 TTTTAATTTT
*
1968192 TTTAATTTT-TATCTTTTATTACTTAA
1 TTTAATTTTGTATATTTTATTACTTAA
*
1968218 TTT-ATTTTGTTTATTTTATTACTTAA
1 TTTAATTTTGTATATTTTATTACTTAA
1968244 TTTAA
1 TTTAA
1968249 GCGACTGTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
25 5 0.19
26 21 0.78
27 1 0.04
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (27 bp):
TTTAATTTTGTATATTTTATTACTTAA
Found at i:1976335 original size:65 final size:64
Alignment explanation
Indices: 1976205--1976343 Score: 149
Period size: 65 Copynumber: 2.2 Consensus size: 64
1976195 GAATAAATTG
* * * *
1976205 AACATCGAATTCATTTCACGCATCGATGGACATACTATGCATTGATGCACTCAGAGTTTTATGAA
1 AACATCGAATGCATTTCACGCATCGATGCACATACCATGCATCGATGCACTCAGAGTTTTATG-A
* * * *
1976270 AACATCGAATGCATTTGATGCATCGATGCACCA-GCCATGCATCGATGCACTCTG-GCTATTT-T
1 AACATCGAATGCATTTCACGCATCGATGCA-CATACCATGCATCGATGCACTCAGAG-T-TTTAT
1976332 GA
63 GA
1976334 AACATCGAAT
1 AACATCGAAT
1976344 TAGTGCACCG
Statistics
Matches: 63, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
64 12 0.19
65 46 0.73
66 5 0.08
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (64 bp):
AACATCGAATGCATTTCACGCATCGATGCACATACCATGCATCGATGCACTCAGAGTTTTATGA
Found at i:1984786 original size:65 final size:63
Alignment explanation
Indices: 1984669--1984876 Score: 190
Period size: 65 Copynumber: 3.2 Consensus size: 63
1984659 TTTTAAAGTG
* * * ** * *
1984669 ATGCACCGATGCACCAATCCATGCATCAATGCAC-CATGGAATAAATTG-AACATTGAATTCATT
1 ATGCATCGATGCA-CAA-CCATGCATCGATGCACTCA-GG-CTATTTTGAAACATCGAATACATT
1984732 TC
62 TC
*
1984734 ATGCATCGATGCACATACTATGCATCGATGCACTCAGAG-T-TTTATGAAAACATCGAATACATT
1 ATGCATCGATGCACA-ACCATGCATCGATGCACTCAG-GCTATTT-TG-AAACATCGAATACATT
*
1984797 TG
62 TC
* * *
1984799 ATGCATCGATGCACCAGCCATGCATCGATGCACTCTGGCTATTTTGAAACATCGAATGCATTTC
1 ATGCATCGATGCA-CAACCATGCATCGATGCACTCAGGCTATTTTGAAACATCGAATACATTTC
*
1984863 ATGCATCAATGCAC
1 ATGCATCGATGCAC
1984877 TCTTAGTGCA
Statistics
Matches: 120, Mismatches: 14, Indels: 20
0.78 0.09 0.13
Matches are distributed among these distances:
62 1 0.01
63 4 0.03
64 46 0.38
65 64 0.53
66 5 0.04
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.27
Consensus pattern (63 bp):
ATGCATCGATGCACAACCATGCATCGATGCACTCAGGCTATTTTGAAACATCGAATACATTTC
Found at i:1986985 original size:21 final size:21
Alignment explanation
Indices: 1986961--1987010 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
1986951 CTCATGAAGC
* *
1986961 GGTTCTTCTGGTGGAGATGAT
1 GGTTCCTCTGGTAGAGATGAT
1986982 GGTTCCTCTGGTAGAGATGAT
1 GGTTCCTCTGGTAGAGATGAT
1987003 GGTTCCTC
1 GGTTCCTC
1987011 CATGCTCTCC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.14, C:0.16, G:0.34, T:0.36
Consensus pattern (21 bp):
GGTTCCTCTGGTAGAGATGAT
Found at i:1989082 original size:2 final size:2
Alignment explanation
Indices: 1989077--1989302 Score: 199
Period size: 2 Copynumber: 115.0 Consensus size: 2
1989067 ATATATATAA
* * * * *
1989077 AG AG AG AG AG AG AG AG AG AG AG AG AG AA AG GG AG GG AG GG GG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* * * * * *
1989119 AG AG GG AA AG AG GG A- AG -G AG AG AG AG GG AG GG AG GG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* * * * *
1989159 AG AG AG AG AG AG GG AG GG AG GG GG AG AG AG -G AG AG AG GG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* * * * * * * * *
1989200 GG AG -G GG GG AG AG GG AG AG AG GG AG GG AG AG AA AG GG AG GG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1989241 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1989283 AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG
1989303 GGGCCATGGT
Statistics
Matches: 177, Mismatches: 43, Indels: 8
0.78 0.19 0.04
Matches are distributed among these distances:
1 4 0.02
2 173 0.98
ACGTcount: A:0.41, C:0.00, G:0.59, T:0.00
Consensus pattern (2 bp):
AG
Found at i:1990413 original size:17 final size:18
Alignment explanation
Indices: 1990391--1990437 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
1990381 ATATTCTATC
1990391 AATTTAATCATAATTT-T
1 AATTTAATCATAATTTAT
*
1990408 AATTTAAT-AAAATTTAT
1 AATTTAATCATAATTTAT
**
1990425 CCTTTAATCATAA
1 AATTTAATCATAA
1990438 AATAATGTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
16 6 0.25
17 15 0.62
18 3 0.12
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.47
Consensus pattern (18 bp):
AATTTAATCATAATTTAT
Found at i:1990451 original size:93 final size:92
Alignment explanation
Indices: 1990251--1990514 Score: 370
Period size: 93 Copynumber: 2.9 Consensus size: 92
1990241 GCAGTTAACC
* * *
1990251 AAAATGATGTAATTATATATTTGAT-TATCAACACTTACATATTCTATCAATTTAGTCCTAATTT
1 AAAATGATGTAATTACATATTTGATCT-TCAACACTTAAATATTCTATCAATTTAATCCTAATTT
* *
1990315 AATTTAATAAATTTTATTCTTTAATCAT
65 AATTTAATAAAATTTATCCTTTAATCAT
* * *
1990343 AAAATGATTTAATTACATATTTGATCTTCAACACTTATATATTCTATCAATTTAATCATAATTTT
1 AAAATGATGTAATTACATATTTGATCTTCAACACTTAAATATTCTATCAATTTAATCCTAA-TTT
1990408 AATTTAATAAAATTTATCCTTTAATCAT
65 AATTTAATAAAATTTATCCTTTAATCAT
* * * * * *
1990436 AAAATAATGTAATTACAAACTTGATCCTCAACGCTTAAATATTCTACCAATTTAATCCTAATTTA
1 AAAATGATGTAATTACATATTTGATCTTCAACACTTAAATATTCTATCAATTTAATCCTAATTTA
1990501 ATTTAAT-AAATTTA
66 ATTTAATAAAATTTA
1990515 ATCATATGAT
Statistics
Matches: 154, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
91 7 0.05
92 65 0.42
93 82 0.53
ACGTcount: A:0.40, C:0.12, G:0.03, T:0.44
Consensus pattern (92 bp):
AAAATGATGTAATTACATATTTGATCTTCAACACTTAAATATTCTATCAATTTAATCCTAATTTA
ATTTAATAAAATTTATCCTTTAATCAT
Found at i:1996713 original size:2 final size:2
Alignment explanation
Indices: 1996668--1996696 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
1996658 ACACACACAC
1996668 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1996697 ACTAGCCTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1997168 original size:17 final size:17
Alignment explanation
Indices: 1997125--1997168 Score: 56
Period size: 15 Copynumber: 2.7 Consensus size: 17
1997115 TATACCAAAT
* *
1997125 TAAAAGTACTTTTGATC
1 TAAAAGTACTTCTAATC
1997142 T-AAA-TACTTCTAATC
1 TAAAAGTACTTCTAATC
1997157 TAAAAGTACTTC
1 TAAAAGTACTTC
1997169 GATCCTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 10 0.43
16 6 0.26
17 7 0.30
ACGTcount: A:0.39, C:0.16, G:0.07, T:0.39
Consensus pattern (17 bp):
TAAAAGTACTTCTAATC
Found at i:1997330 original size:12 final size:12
Alignment explanation
Indices: 1997289--1997387 Score: 65
Period size: 13 Copynumber: 7.7 Consensus size: 12
1997279 TACTATTTAA
1997289 AAATTTTGTAATT
1 AAATTTT-TAATT
1997302 AATAATATTTTAATT
1 -A-AAT-TTTTAATT
*
1997317 AAATTTTTATTT
1 AAATTTTTAATT
1997329 AAAATTTTATAATT
1 -AAATTTT-TAATT
1997343 AAATTTTATAAATT
1 AAATTTT-T-AATT
* * *
1997357 TATTTTTTCA-T
1 AAATTTTTAATT
* *
1997368 AATTTTTTAAAT
1 AAATTTTTAATT
1997380 AAATTTTT
1 AAATTTTT
1997388 TATCAAAACA
Statistics
Matches: 71, Mismatches: 8, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
11 9 0.13
12 16 0.23
13 20 0.28
14 15 0.21
15 8 0.11
16 3 0.04
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.58
Consensus pattern (12 bp):
AAATTTTTAATT
Found at i:1997344 original size:26 final size:28
Alignment explanation
Indices: 1997289--1997349 Score: 83
Period size: 26 Copynumber: 2.2 Consensus size: 28
1997279 TACTATTTAA
1997289 AAATTTTGTAATTAATAATATTTTAATT
1 AAATTTTGTAATTAATAATATTTTAATT
*
1997317 AAATTTT-TATTTAA-AAT-TTTATAATT
1 AAATTTTGTAATTAATAATATTT-TAATT
1997343 AAATTTT
1 AAATTTT
1997350 ATAAATTTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
25 3 0.10
26 15 0.48
27 6 0.19
28 7 0.23
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.56
Consensus pattern (28 bp):
AAATTTTGTAATTAATAATATTTTAATT
Found at i:2001350 original size:20 final size:20
Alignment explanation
Indices: 2001321--2001364 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
2001311 TTTAAATAAA
2001321 ATTTAAATATTATTCTTAAT
1 ATTTAAATATTATTCTTAAT
* * *
2001341 ATTTATATATTTTTTTTAAT
1 ATTTAAATATTATTCTTAAT
2001361 ATTT
1 ATTT
2001365 TCTGTCCAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (20 bp):
ATTTAAATATTATTCTTAAT
Found at i:2003060 original size:25 final size:24
Alignment explanation
Indices: 2003027--2003082 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 24
2003017 TAAAAAAGGG
* * *
2003027 AAAATAAAAAAAATAAGAAAATTA
1 AAAAAAAAAAAAATAACAAAAATA
**
2003051 AAAGAAAAAATTAATAACAAAAATA
1 AAA-AAAAAAAAAATAACAAAAATA
2003076 AAAAAAA
1 AAAAAAA
2003083 TGCTTAAATT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 7 0.27
25 19 0.73
ACGTcount: A:0.80, C:0.02, G:0.04, T:0.14
Consensus pattern (24 bp):
AAAAAAAAAAAAATAACAAAAATA
Found at i:2003119 original size:24 final size:23
Alignment explanation
Indices: 2003050--2003119 Score: 61
Period size: 22 Copynumber: 3.0 Consensus size: 23
2003040 TAAGAAAATT
* *
2003050 AAAAGAAAAAATTAATAAC-AAA
1 AAAAAAAAAAATGAATAACTAAA
* ** *
2003072 AATAAAAAAAATGCTTAAATTAAA
1 AAAAAAAAAAATGAAT-AACTAAA
2003096 AAGAAAAAAAAATGAATAACTAAA
1 AA-AAAAAAAAATGAATAACTAAA
2003120 CCTTTAAAAG
Statistics
Matches: 35, Mismatches: 10, Indels: 4
0.71 0.20 0.08
Matches are distributed among these distances:
22 11 0.31
23 2 0.06
24 11 0.31
25 11 0.31
ACGTcount: A:0.73, C:0.04, G:0.06, T:0.17
Consensus pattern (23 bp):
AAAAAAAAAAATGAATAACTAAA
Found at i:2006613 original size:13 final size:13
Alignment explanation
Indices: 2006595--2006619 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2006585 TTTATTTTTC
2006595 ATAATCATCACTT
1 ATAATCATCACTT
2006608 ATAATCATCACT
1 ATAATCATCACT
2006620 AACTTTAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.00, T:0.36
Consensus pattern (13 bp):
ATAATCATCACTT
Found at i:2007953 original size:41 final size:41
Alignment explanation
Indices: 2007908--2007987 Score: 108
Period size: 41 Copynumber: 2.0 Consensus size: 41
2007898 ACTTTTAGAC
* *
2007908 CAAGCTCTACTAGACTCGATAA-CTCGTGAGCTTAAAATTGT
1 CAAGCTCCACTAGACTCGA-AAGCTCGCGAGCTTAAAATTGT
* *
2007949 CAAGCTCCACTTGATTCGAAAGCTCGCGAGCTTAAAATT
1 CAAGCTCCACTAGACTCGAAAGCTCGCGAGCTTAAAATT
2007988 TTAAAACTCC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 2 0.06
41 32 0.94
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (41 bp):
CAAGCTCCACTAGACTCGAAAGCTCGCGAGCTTAAAATTGT
Found at i:2017894 original size:60 final size:60
Alignment explanation
Indices: 2017822--2017958 Score: 172
Period size: 60 Copynumber: 2.3 Consensus size: 60
2017812 TAGTCCCTAC
* * * *
2017822 ACTTTTGAATATT-CAAATTTCATCCCCAAACTATGACTCTCATTCTAAAATGA-TCCTTAA
1 ACTTTTGAATATTCCAAA-TCCATACCCAAACTATGACTCACATTCTAAAATGACT-CTAAA
* *
2017882 ACTTTTGAATATTCCAAATCCGTACCCAAACTATGACTCACATTCTAAATTGACTCTAAA
1 ACTTTTGAATATTCCAAATCCATACCCAAACTATGACTCACATTCTAAAATGACTCTAAA
2017942 ACTTTTGAACT-TTCCAA
1 ACTTTTGAA-TATTCCAA
2017959 TAACATCTCC
Statistics
Matches: 68, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
60 62 0.91
61 6 0.09
ACGTcount: A:0.35, C:0.24, G:0.06, T:0.35
Consensus pattern (60 bp):
ACTTTTGAATATTCCAAATCCATACCCAAACTATGACTCACATTCTAAAATGACTCTAAA
Found at i:2024110 original size:25 final size:25
Alignment explanation
Indices: 2024082--2024136 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
2024072 TAGGTAATTT
*
2024082 ATTTTTTTTCTATAAAATTCTT-TAA
1 ATTTTTTTTATATAAAATT-TTATAA
* *
2024107 ATTTATTTTATCTAAAATTTTATAA
1 ATTTTTTTTATATAAAATTTTATAA
2024132 ATTTT
1 ATTTT
2024137 AAATTAAGTA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
24 2 0.08
25 23 0.92
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (25 bp):
ATTTTTTTTATATAAAATTTTATAA
Done.