Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007860.1 Hibiscus syriacus cultivar Beakdansim tig00110223_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2941097
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 6 of 16
Found at i:735088 original size:23 final size:24
Alignment explanation
Indices: 735045--735104 Score: 72
Period size: 23 Copynumber: 2.5 Consensus size: 24
735035 GGCTGGAAGT
735045 TAATTTTTTAACTTCAGTTTTTA-A
1 TAATTTTTTAA-TTCAGTTTTTATA
735069 CTAATTTTTTAATAT-A-TTTTTATA
1 -TAATTTTTTAAT-TCAGTTTTTATA
735093 TAATTTTTTAAT
1 TAATTTTTTAAT
735105 CTTTTTTTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
23 18 0.55
24 3 0.09
25 12 0.36
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.62
Consensus pattern (24 bp):
TAATTTTTTAATTCAGTTTTTATA
Found at i:735110 original size:11 final size:11
Alignment explanation
Indices: 735062--735123 Score: 52
Period size: 12 Copynumber: 5.4 Consensus size: 11
735052 TTAACTTCAG
*
735062 TTTTTAACTAAT
1 TTTTTAA-TATT
*
735074 TTTTTAATATA
1 TTTTTAATATT
*
735085 TTTTTATATAAT
1 TTTTTA-ATATT
*
735097 TTTTTAATCTTT
1 TTTTTAAT-ATT
*
735109 TTTTTAATCTT
1 TTTTTAATATT
735120 TTTT
1 TTTT
735124 ATTTTAAAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
11 16 0.39
12 25 0.61
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.69
Consensus pattern (11 bp):
TTTTTAATATT
Found at i:735111 original size:12 final size:12
Alignment explanation
Indices: 735096--735123 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
735086 TTTTATATAA
735096 TTTTTTAATCTT
1 TTTTTTAATCTT
735108 TTTTTTAATCTT
1 TTTTTTAATCTT
735120 TTTT
1 TTTT
735124 ATTTTAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.14, C:0.07, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTTTTAATCTT
Found at i:735111 original size:23 final size:23
Alignment explanation
Indices: 735045--735112 Score: 68
Period size: 23 Copynumber: 2.9 Consensus size: 23
735035 GGCTGGAAGT
735045 TAATTTTTTAA-CTTCAGTTTTTAAC
1 TAATTTTTTAATCTT---TTTTTAAC
* *
735070 TAATTTTTTAATATATTTTTATA-
1 TAATTTTTTAATCTTTTTTTA-AC
735093 TAATTTTTTAATCTTTTTTT
1 TAATTTTTTAATCTTTTTTT
735113 TAATCTTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
23 24 0.65
24 1 0.03
25 11 0.30
26 1 0.03
ACGTcount: A:0.28, C:0.06, G:0.01, T:0.65
Consensus pattern (23 bp):
TAATTTTTTAATCTTTTTTTAAC
Found at i:739384 original size:63 final size:63
Alignment explanation
Indices: 739285--739411 Score: 254
Period size: 63 Copynumber: 2.0 Consensus size: 63
739275 ATTCTTTGAC
739285 GGATGTTAATTTGGGCTGAAATGTTTAGTTTTGATAAATGCATACACACACCATTTTCCTAAA
1 GGATGTTAATTTGGGCTGAAATGTTTAGTTTTGATAAATGCATACACACACCATTTTCCTAAA
739348 GGATGTTAATTTGGGCTGAAATGTTTAGTTTTGATAAATGCATACACACACCATTTTCCTAAA
1 GGATGTTAATTTGGGCTGAAATGTTTAGTTTTGATAAATGCATACACACACCATTTTCCTAAA
739411 G
1 G
739412 CATAGCGCTG
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 64 1.00
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.36
Consensus pattern (63 bp):
GGATGTTAATTTGGGCTGAAATGTTTAGTTTTGATAAATGCATACACACACCATTTTCCTAAA
Found at i:749915 original size:48 final size:48
Alignment explanation
Indices: 749844--749943 Score: 191
Period size: 48 Copynumber: 2.1 Consensus size: 48
749834 TCTAAGAGTT
*
749844 TTTGAAGTAATGTCTGGACTTCAGTTGAACTTAAAGAAAAGCAGATTG
1 TTTGAAGTAATGTCTGGACTTCAGCTGAACTTAAAGAAAAGCAGATTG
749892 TTTGAAGTAATGTCTGGACTTCAGCTGAACTTAAAGAAAAGCAGATTG
1 TTTGAAGTAATGTCTGGACTTCAGCTGAACTTAAAGAAAAGCAGATTG
749940 TTTG
1 TTTG
749944 GCATCAATAC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 51 1.00
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32
Consensus pattern (48 bp):
TTTGAAGTAATGTCTGGACTTCAGCTGAACTTAAAGAAAAGCAGATTG
Found at i:750464 original size:43 final size:43
Alignment explanation
Indices: 750403--750489 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
750393 GGAAGATGAT
750403 ATGCAGCAAATACAATCTTGACTCATCATTATTATTGTTCGAC
1 ATGCAGCAAATACAATCTTGACTCATCATTATTATTGTTCGAC
750446 ATGCAGCAAATACAATCTTGACTCATCATTATTATTGTTCGAC
1 ATGCAGCAAATACAATCTTGACTCATCATTATTATTGTTCGAC
750489 A
1 A
750490 GTAAGGTTCC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (43 bp):
ATGCAGCAAATACAATCTTGACTCATCATTATTATTGTTCGAC
Found at i:754492 original size:44 final size:44
Alignment explanation
Indices: 754410--754493 Score: 132
Period size: 44 Copynumber: 1.9 Consensus size: 44
754400 TCGATCACAC
* * *
754410 ATTTTTCTTAATTTTATATTAAGTTGTTGTATCATAGAATCTTT
1 ATTTTTCTTAATTTTATATTAAGATGGTGTACCATAGAATCTTT
*
754454 ATTTTTCTTAATTTTATATTAAGATGGTGTACCCTAGAAT
1 ATTTTTCTTAATTTTATATTAAGATGGTGTACCATAGAAT
754494 TTCACTTTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.29, C:0.08, G:0.11, T:0.52
Consensus pattern (44 bp):
ATTTTTCTTAATTTTATATTAAGATGGTGTACCATAGAATCTTT
Found at i:754503 original size:44 final size:44
Alignment explanation
Indices: 754409--754504 Score: 131
Period size: 44 Copynumber: 2.2 Consensus size: 44
754399 TTCGATCACA
* * *
754409 CATTTTTCTTAATTTTATATTAAGTTGTTGTATCATAGAATCTT
1 CATTTTTCTTAATTTTATATTAAGATGGTGTACCATAGAATCTT
* *
754453 TATTTTTCTTAATTTTATATTAAGATGGTGTACCCTAGAAT-TT
1 CATTTTTCTTAATTTTATATTAAGATGGTGTACCATAGAATCTT
754496 CACTTTTTC
1 CA-TTTTTC
754505 ACGGTCTTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
43 3 0.07
44 42 0.93
ACGTcount: A:0.26, C:0.11, G:0.09, T:0.53
Consensus pattern (44 bp):
CATTTTTCTTAATTTTATATTAAGATGGTGTACCATAGAATCTT
Found at i:754960 original size:21 final size:21
Alignment explanation
Indices: 754936--754987 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
754926 ACGAATATGG
754936 GGAACAAGATTCTTGCAAATA
1 GGAACAAGATTCTTGCAAATA
754957 GGAACAAGATTCTTGCAAATA
1 GGAACAAGATTCTTGCAAATA
**
754978 TAAACAAGAT
1 GGAACAAGAT
754988 GACTCCTTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.46, C:0.13, G:0.17, T:0.23
Consensus pattern (21 bp):
GGAACAAGATTCTTGCAAATA
Found at i:755840 original size:31 final size:31
Alignment explanation
Indices: 755797--755859 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
755787 TACAATACAA
*
755797 TCCCCCAACATTTAGTCCGTTTGTAATATGG
1 TCCCCCAACATTTAGTCCGTTTGCAATATGG
*
755828 TCCCTCAACATTTAGTCCGTTTGCAATATGG
1 TCCCCCAACATTTAGTCCGTTTGCAATATGG
755859 T
1 T
755860 TCCCGATGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.37
Consensus pattern (31 bp):
TCCCCCAACATTTAGTCCGTTTGCAATATGG
Found at i:757681 original size:31 final size:30
Alignment explanation
Indices: 757654--757750 Score: 149
Period size: 31 Copynumber: 3.1 Consensus size: 30
757644 TGCAATACAA
*
757654 TCCCTCAACATTTAGTCTGTTTGCAATATGG
1 TCCC-CAACATTTAGTCCGTTTGCAATATGG
*
757685 TCCCCCAACATTTATTCCGTTTGCAATATGG
1 T-CCCCAACATTTAGTCCGTTTGCAATATGG
757716 TCTCCCAACATTTAGTCCGTTTGCAATATGG
1 TC-CCCAACATTTAGTCCGTTTGCAATATGG
757747 TCCC
1 TCCC
757751 TGACGTAACT
Statistics
Matches: 61, Mismatches: 3, Indels: 5
0.88 0.04 0.07
Matches are distributed among these distances:
30 3 0.05
31 55 0.90
32 3 0.05
ACGTcount: A:0.22, C:0.28, G:0.14, T:0.36
Consensus pattern (30 bp):
TCCCCAACATTTAGTCCGTTTGCAATATGG
Found at i:760291 original size:12 final size:12
Alignment explanation
Indices: 760259--760291 Score: 52
Period size: 10 Copynumber: 2.9 Consensus size: 12
760249 CCGAGTAAGG
760259 ATTCAAATGAGA
1 ATTCAAATGAGA
760271 ATT--AATGAGA
1 ATTCAAATGAGA
760281 ATTCAAATGAG
1 ATTCAAATGAG
760292 TCTCACAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
10 10 0.53
12 9 0.47
ACGTcount: A:0.48, C:0.06, G:0.18, T:0.27
Consensus pattern (12 bp):
ATTCAAATGAGA
Found at i:762376 original size:13 final size:13
Alignment explanation
Indices: 762352--762415 Score: 74
Period size: 13 Copynumber: 4.9 Consensus size: 13
762342 TGCTGTTCTC
*
762352 ATGACGCACATTT
1 ATGACGCGCATTT
*
762365 ATGACACGCATTT
1 ATGACGCGCATTT
*
762378 ATGACGCACATTT
1 ATGACGCGCATTT
* *
762391 ATGAGGTGCATTT
1 ATGACGCGCATTT
*
762404 ATGACGCTCATT
1 ATGACGCGCATT
762416 GCGTGTCATT
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
13 41 1.00
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (13 bp):
ATGACGCGCATTT
Found at i:762388 original size:26 final size:26
Alignment explanation
Indices: 762352--762415 Score: 92
Period size: 26 Copynumber: 2.5 Consensus size: 26
762342 TGCTGTTCTC
762352 ATGACGCACATTTATGACACGCATTT
1 ATGACGCACATTTATGACACGCATTT
***
762378 ATGACGCACATTTATGAGGTGCATTT
1 ATGACGCACATTTATGACACGCATTT
*
762404 ATGACGCTCATT
1 ATGACGCACATT
762416 GCGTGTCATT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (26 bp):
ATGACGCACATTTATGACACGCATTT
Found at i:762579 original size:2 final size:2
Alignment explanation
Indices: 762572--762620 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
762562 TTTCATAAAT
762572 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
762614 TA TA TA T
1 TA TA TA T
762621 TGTAGATTGA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:763834 original size:16 final size:16
Alignment explanation
Indices: 763813--763844 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
763803 GCATTTCGTT
763813 AAAATGAACAAAAGCA
1 AAAATGAACAAAAGCA
763829 AAAATGAACAAAAGCA
1 AAAATGAACAAAAGCA
763845 TTTCGTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.69, C:0.12, G:0.12, T:0.06
Consensus pattern (16 bp):
AAAATGAACAAAAGCA
Found at i:772003 original size:21 final size:20
Alignment explanation
Indices: 771979--772022 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
771969 TGGTCGAACT
771979 TTTTGAAAAAGGATCGATCCC
1 TTTT-AAAAAGGATCGATCCC
*
772000 TTTTAATAAAGGATTGATCCC
1 TTTTAA-AAAGGATCGATCCC
772021 TT
1 TT
772023 ATACATTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 2 0.10
21 19 0.90
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (20 bp):
TTTTAAAAAGGATCGATCCC
Found at i:773831 original size:15 final size:16
Alignment explanation
Indices: 773804--773838 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
773794 GCTTTCAAAA
773804 TTGAAAAATGAAAATT
1 TTGAAAAATGAAAATT
*
773820 TTGAAAAA-GAAATTT
1 TTGAAAAATGAAAATT
773835 TTGA
1 TTGA
773839 TTTGAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.51, C:0.00, G:0.14, T:0.34
Consensus pattern (16 bp):
TTGAAAAATGAAAATT
Found at i:774754 original size:21 final size:21
Alignment explanation
Indices: 774725--774766 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
774715 ATTTTAAAGG
*
774725 AAAATGATCGATCCATTTGAT
1 AAAAGGATCGATCCATTTGAT
*
774746 AAAAGGATCGATCCCTTTGAT
1 AAAAGGATCGATCCATTTGAT
774767 TGATCCCTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.31
Consensus pattern (21 bp):
AAAAGGATCGATCCATTTGAT
Found at i:781594 original size:22 final size:23
Alignment explanation
Indices: 781546--781597 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 23
781536 ATTATGAGAA
781546 AAAAAAACAATCTCTAACTTACGAG
1 AAAAAAACAATCTCTAACTTA--AG
* *
781571 AAAAAAATAATCTTTAACTT-AG
1 AAAAAAACAATCTCTAACTTAAG
781593 AAAAA
1 AAAAA
781598 CACTTTCATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 7 0.28
25 18 0.72
ACGTcount: A:0.58, C:0.13, G:0.06, T:0.23
Consensus pattern (23 bp):
AAAAAAACAATCTCTAACTTAAG
Found at i:781999 original size:21 final size:21
Alignment explanation
Indices: 781960--781999 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
781950 TAAAAAATGT
* **
781960 AAAATTTAAAAATGGTTAATA
1 AAAATTGAAAAATAATTAATA
781981 AAAATTGAAAAATAATTAA
1 AAAATTGAAAAATAATTAA
782000 CGTCTATTGG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.30
Consensus pattern (21 bp):
AAAATTGAAAAATAATTAATA
Found at i:784495 original size:15 final size:15
Alignment explanation
Indices: 784477--784506 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
784467 AAAACCATGT
784477 TAGATAAAAAGGTAA
1 TAGATAAAAAGGTAA
*
784492 TAGATTAAAAGGTAA
1 TAGATAAAAAGGTAA
784507 GAAATAAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.20, T:0.23
Consensus pattern (15 bp):
TAGATAAAAAGGTAA
Found at i:784612 original size:13 final size:11
Alignment explanation
Indices: 784594--784700 Score: 54
Period size: 11 Copynumber: 9.1 Consensus size: 11
784584 AATAGTAAGT
784594 AAAATAAATATAA
1 AAAATAAA-A-AA
784607 AAAATAAAGAAA
1 AAAATAAA-AAA
784619 AAAA-AGAAAAA
1 AAAATA-AAAAA
*
784630 AAAATATAGAAAT
1 AAAATA-A-AAAA
*
784643 AAAACAAATAAA
1 AAAATAAA-AAA
*
784655 TAAAATAATAAA
1 -AAAATAAAAAA
* *
784667 AAAGTAAAAAT
1 AAAATAAAAAA
* * * *
784678 AATATATATAT
1 AAAATAAAAAA
784689 AAAATAAAAAA
1 AAAATAAAAAA
784700 A
1 A
784701 TAAAAAAAGT
Statistics
Matches: 71, Mismatches: 18, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
11 32 0.45
12 16 0.23
13 23 0.32
ACGTcount: A:0.78, C:0.01, G:0.04, T:0.18
Consensus pattern (11 bp):
AAAATAAAAAA
Found at i:784660 original size:9 final size:9
Alignment explanation
Indices: 784593--784715 Score: 63
Period size: 8 Copynumber: 14.2 Consensus size: 9
784583 AAATAGTAAG
784593 TAAAATAAA
1 TAAAATAAA
784602 TATAAA-AAA
1 TA-AAATAAA
784611 TAAAGA-AAA
1 TAAA-ATAAA
*
784620 -AAAAGAAA
1 TAAAATAAA
784628 -AAAA-AATA
1 TAAAATAA-A
784636 TAGAAATAAA
1 TA-AAATAAA
784646 -ACAAATAAA
1 TA-AAATAAA
784655 TAAAAT-AA
1 TAAAATAAA
*
784663 TAAAA-AAG
1 TAAAATAAA
784671 TAAAA-ATAA
1 TAAAATA-AA
* *
784680 T-ATATATA
1 TAAAATAAA
784688 TAAAATAAA
1 TAAAATAAA
784697 -AAAATAAA
1 TAAAATAAA
784705 -AAAAGTAAA
1 TAAAA-TAAA
784714 TA
1 TA
784716 TATATATATA
Statistics
Matches: 93, Mismatches: 7, Indels: 27
0.73 0.06 0.21
Matches are distributed among these distances:
7 3 0.03
8 43 0.46
9 36 0.39
10 9 0.10
11 2 0.02
ACGTcount: A:0.76, C:0.01, G:0.04, T:0.19
Consensus pattern (9 bp):
TAAAATAAA
Found at i:784691 original size:46 final size:46
Alignment explanation
Indices: 784605--784705 Score: 125
Period size: 46 Copynumber: 2.2 Consensus size: 46
784595 AAATAAATAT
*
784605 AAAAAAT-AAAGAA-AAAAAAGAAAAAAAAATATAGAAATAAAACA
1 AAAAAATAAAATAATAAAAAAGAAAAAAAAATATAGAAATAAAACA
* * * * * *
784649 AATAAATAAAATAATAAAAAAGTAAAAATAATATATATATAAAATA
1 AAAAAATAAAATAATAAAAAAGAAAAAAAAATATAGAAATAAAACA
784695 AAAAAATAAAA
1 AAAAAATAAAA
784706 AAAGTAAATA
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
44 6 0.13
45 5 0.11
46 36 0.77
ACGTcount: A:0.78, C:0.01, G:0.04, T:0.17
Consensus pattern (46 bp):
AAAAAATAAAATAATAAAAAAGAAAAAAAAATATAGAAATAAAACA
Found at i:784696 original size:22 final size:22
Alignment explanation
Indices: 784652--784702 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
784642 TAAAACAAAT
*
784652 AAATAAAATAATAAAAAAGTAA
1 AAATAATATAATAAAAAAGTAA
*
784674 AAATAATATATATATAAAA-TAA
1 AAATAATATA-ATAAAAAAGTAA
784696 AAA-AATA
1 AAATAATA
784703 AAAAAAGTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 4 0.15
22 15 0.58
23 7 0.27
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.24
Consensus pattern (22 bp):
AAATAATATAATAAAAAAGTAA
Found at i:784703 original size:13 final size:13
Alignment explanation
Indices: 784594--784705 Score: 67
Period size: 13 Copynumber: 8.7 Consensus size: 13
784584 AATAGTAAGT
784594 AAAAT-AAATATAA
1 AAAATAAAATA-AA
784607 AAAATAAAGA-AAA
1 AAAATAAA-ATAAA
*
784620 AAAAGAAAA-AAA
1 AAAATAAAATAAA
*
784632 AATATAGAAATAAA
1 AAAATA-AAATAAA
784646 ACAAAT-AAATAAA
1 A-AAATAAAATAAA
*
784659 ATAATAAAA-AAGTA
1 AAAATAAAATAA--A
*
784673 AAAAT--AATATA
1 AAAATAAAATAAA
* *
784684 TATATAAAATAAA
1 AAAATAAAATAAA
784697 AAAATAAAA
1 AAAATAAAA
784706 AAAGTAAATA
Statistics
Matches: 76, Mismatches: 12, Indels: 22
0.69 0.11 0.20
Matches are distributed among these distances:
11 4 0.05
12 15 0.20
13 41 0.54
14 12 0.16
15 4 0.05
ACGTcount: A:0.78, C:0.01, G:0.04, T:0.18
Consensus pattern (13 bp):
AAAATAAAATAAA
Found at i:784726 original size:36 final size:36
Alignment explanation
Indices: 784652--784785 Score: 117
Period size: 42 Copynumber: 3.5 Consensus size: 36
784642 TAAAACAAAT
*
784652 AAATAAAATAAT-AAAAAAGTAAAAATAATATATATATA
1 AAATAAAAAAATAAAAAAAGT--AAAT-ATATATATATA
784690 AAATAAAAAAATAAAAAAAGTAAATATATATATATA
1 AAATAAAAAAATAAAAAAAGTAAATATATATATATA
* * *
784726 AATTAATAAAACTGATAATAAAAAATAATATATTTATATATA
1 AAATAA-AAAA---ATAA-AAAAAGTAA-ATATATATATATA
**
784768 ATCTAAAAAAAATAAAAA
1 AAAT-AAAAAAATAAAAA
784786 TATATACTAA
Statistics
Matches: 82, Mismatches: 6, Indels: 16
0.79 0.06 0.15
Matches are distributed among these distances:
36 16 0.20
37 8 0.10
38 14 0.17
39 12 0.15
40 4 0.05
41 8 0.10
42 18 0.22
43 2 0.02
ACGTcount: A:0.69, C:0.01, G:0.02, T:0.28
Consensus pattern (36 bp):
AAATAAAAAAATAAAAAAAGTAAATATATATATATA
Found at i:784835 original size:22 final size:21
Alignment explanation
Indices: 784781--784841 Score: 54
Period size: 23 Copynumber: 2.8 Consensus size: 21
784771 TAAAAAAAAT
784781 AAAAATATATAC-T-AAAGTAA
1 AAAAATAT-TACATAAAAGTAA
* *
784801 AAAAGAAAATACATAAAATGTAA
1 AAAA-ATATTACATAAAA-GTAA
784824 AAAAATATTACATGAAAA
1 AAAAATATTACAT-AAAA
784842 AAAAAGAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
20 7 0.22
21 3 0.09
22 10 0.31
23 12 0.38
ACGTcount: A:0.67, C:0.05, G:0.07, T:0.21
Consensus pattern (21 bp):
AAAAATATTACATAAAAGTAA
Found at i:785205 original size:34 final size:34
Alignment explanation
Indices: 785162--785230 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
785152 GAATCCTAGC
785162 AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
1 AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
* *
785196 AAAATTCTATCCTATTTTTAGGAGTTTGAATCCT
1 AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
785230 A
1 A
785231 GTAGGACGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.42
Consensus pattern (34 bp):
AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
Found at i:785995 original size:98 final size:98
Alignment explanation
Indices: 785826--786084 Score: 295
Period size: 98 Copynumber: 2.6 Consensus size: 98
785816 TGGAACCGGA
* * *
785826 AAATTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCA
1 AAATTGTTTGTTGACAACCAGCCGCCCCTTCGCTGTGAAGTTGAACTTGTGCTGTCTCGAGTCCA
* * *
785891 ATATCCTTCGTTGTGAAGTTGAGATTGGCTCCG
66 ATATCCTCCGCTGTGAAGTTGAAATTGGCTCCG
* ** * * *
785924 AAATTGTTTGTTGATAGTCAGCCGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCTTGGGTCCA
1 AAATTGTTTGTTGACAACCAGCCGCCCCTTCGCTGTGAAGTTGAACTTGTGCTGTCTCGAGTCCA
785989 ATATCCTCCGCTGTGAAGTTGAAATTGGC-CCTG
66 ATATCCTCCGCTGTGAAGTTGAAATTGGCTCC-G
* * * *
786022 AAACTGGAAAATTGTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTC
1 AAA-TTG-----T-TTGTTGACAACCAGCCGCCCCTTCGCTGTGAAGTTGAACTTGTGCTGTC
786085 ATAGGTAGCA
Statistics
Matches: 133, Mismatches: 20, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
97 2 0.02
98 86 0.65
99 2 0.02
104 1 0.01
105 42 0.32
ACGTcount: A:0.20, C:0.21, G:0.25, T:0.34
Consensus pattern (98 bp):
AAATTGTTTGTTGACAACCAGCCGCCCCTTCGCTGTGAAGTTGAACTTGTGCTGTCTCGAGTCCA
ATATCCTCCGCTGTGAAGTTGAAATTGGCTCCG
Found at i:786078 original size:105 final size:103
Alignment explanation
Indices: 785823--786218 Score: 335
Period size: 105 Copynumber: 3.8 Consensus size: 103
785813 CTCTGGAACC
* *
785823 GGAAAATTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGT
1 GGAAAATTG-TTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTTGGGT
* * ** * ** *
785888 -CCA-ATATCCTTCGTTGT-GAAGTTGAG-ATTG--GCT
65 ACCAGATATCCTCCGTCGTGGAAAATCAGCCCTGAAACT
* * ** * * * *
785921 CCG-AAATTGTTTGTTGATAGTCAGCCGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCTTGGG
1 -GGAAAATTG-TTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTTGGG
* **
785985 T-CCA-ATATCCTCCG-CTGTGAAGTTGAAATTGGCCCTGAAACT
64 TACCAGATATCCTCCGTC-GTG--G--AAAATCAGCCCTGAAACT
* *
786027 GGAAAATTGTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCATAGGTA
1 GGAAAATTGTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTTGGGTA
* ** *
786092 GCATGATATCCTCCGTCGTGGAAAATCAGCTTTGAAATT
66 CCA-GATATCCTCCGTCGTGGAAAATCAGCCCTGAAACT
* *
786131 GGAAAGTTGTTCGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTTGAGT
1 GGAAAATTGTT-GTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTTGGGT
** *
786196 GGCACGATATCCTCCATCGTGGA
65 ACCA-GATATCCTCCGTCGTGGA
786219 GTTGAAATCG
Statistics
Matches: 238, Mismatches: 44, Indels: 24
0.78 0.14 0.08
Matches are distributed among these distances:
98 67 0.28
99 1 0.00
101 1 0.00
103 3 0.01
104 24 0.10
105 117 0.49
106 11 0.05
108 13 0.05
109 1 0.00
ACGTcount: A:0.21, C:0.20, G:0.26, T:0.33
Consensus pattern (103 bp):
GGAAAATTGTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTTGGGTA
CCAGATATCCTCCGTCGTGGAAAATCAGCCCTGAAACT
Found at i:786923 original size:31 final size:31
Alignment explanation
Indices: 786888--787015 Score: 82
Period size: 31 Copynumber: 3.9 Consensus size: 31
786878 AGGAAATAAA
786888 CTCAAAG-ATTTTGTGTTTCAAGAGAAACTGT
1 CTCAAAGAATTTTGTGTTTCAAGAGAAACT-T
** * *
786919 CTCAAGGGAGACAAAATT-TGTTTCAAGGGAAACAAT
1 CTCAA---AG--AATTTTGTGTTTCAAGAGAAAC-TT
*
786955 CTCAAAG-GTTTTGTGTTTCAAGAGAAACATT
1 CTCAAAGAATTTTGTGTTTCAAGAGAAAC-TT
* **
786986 TTCAAAGGTTTTTTGTGTTTCAAGAGAAAC
1 CTCAAA-GAATTTTGTGTTTCAAGAGAAAC
787016 AATTTCAAAG
Statistics
Matches: 76, Mismatches: 11, Indels: 18
0.72 0.10 0.17
Matches are distributed among these distances:
30 2 0.03
31 26 0.34
32 1 0.01
33 22 0.29
34 2 0.03
36 20 0.26
37 3 0.04
ACGTcount: A:0.34, C:0.12, G:0.20, T:0.33
Consensus pattern (31 bp):
CTCAAAGAATTTTGTGTTTCAAGAGAAACTT
Found at i:786975 original size:67 final size:67
Alignment explanation
Indices: 786790--786982 Score: 251
Period size: 67 Copynumber: 2.8 Consensus size: 67
786780 GTCTTAAAAA
* * * * *
786790 AGACAAAATTCGTTTCAAGGGAAACGATCTTAAAGATATATGTTGTTTCATGAGAAACGGCCTCA
1 AGACAAAATTTGTTTCAAGGGAAACAATCTCAAAGAT-TTTG-TGTTTCAAGAGAAACGGCCTCA
786855 AGGG
64 AGGG
* * * * * *
786859 AGACAAAATTTTGTTTTAAAGGAAATAAACTCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCAA
1 AGACAAAA-TTTGTTTCAAGGGAAACAATCTCAAAGATTTTGTGTTTCAAGAGAAACGGCCTCAA
786924 GGG
65 GGG
*
786927 AGACAAAATTTGTTTCAAGGGAAACAATCTCAAAGGTTTTGTGTTTCAAGAGAAAC
1 AGACAAAATTTGTTTCAAGGGAAACAATCTCAAAGATTTTGTGTTTCAAGAGAAAC
786983 ATTTTCAAAG
Statistics
Matches: 107, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
67 43 0.40
68 31 0.29
69 11 0.10
70 22 0.21
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.28
Consensus pattern (67 bp):
AGACAAAATTTGTTTCAAGGGAAACAATCTCAAAGATTTTGTGTTTCAAGAGAAACGGCCTCAAG
GG
Found at i:787042 original size:36 final size:33
Alignment explanation
Indices: 786937--787051 Score: 162
Period size: 33 Copynumber: 3.5 Consensus size: 33
786927 AGACAAAATT
* *
786937 TGTTTCAAGGGAAACAATCTCAAAGG--TTTTG
1 TGTTTCAAGAGAAACAATTTCAAAGGTTTTTTG
*
786968 TGTTTCAAGAGAAACATTTTCAAAGGTTTTTTG
1 TGTTTCAAGAGAAACAATTTCAAAGGTTTTTTG
787001 TGTTTCAAGAGAAACAATTTCAAAGGTTTCTTTTTG
1 TGTTTCAAGAGAAACAATTTCAAAGG--T-TTTTTG
787037 TGTTTCAAGAGAAAC
1 TGTTTCAAGAGAAAC
787052 TGTATCAAGG
Statistics
Matches: 75, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
31 23 0.31
33 30 0.40
35 1 0.01
36 21 0.28
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.37
Consensus pattern (33 bp):
TGTTTCAAGAGAAACAATTTCAAAGGTTTTTTG
Found at i:787196 original size:36 final size:36
Alignment explanation
Indices: 787092--787566 Score: 254
Period size: 36 Copynumber: 13.9 Consensus size: 36
787082 CAAGGATTGA
*
787092 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA-TT
* * * *
787129 TGTTTTAAGAAAAACTTGTCTTAAGATAGACAAAATT
1 TGTTTCAAGAGAAAC-TGTCTCAAGAGAGACAAAATT
787166 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT
* *
787202 TGTTT-AATGTA-AAACATAT-TC-A-A-AG----ATTT
1 TGTTTCAA-G-AGAAAC-TGTCTCAAGAGAGACAAAATT
* * *
787231 TGTTTCAAGGGAAACTGTTTTC-A-A-AG-----TTT
1 TGTTTCAAGAGAAACTG-TCTCAAGAGAGACAAAATT
*
787260 ATGTTTCAATAGAAACTGTCTCAA-AGGAGACAAAATT
1 -TGTTTCAAGAGAAACTGTCTCAAGA-GAGACAAAATT
* *
787297 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT
** * * * *
787333 CATTTCAAGGGAAA-TGCTTTC-A-A-TG-----TTT
1 TGTTTCAAGAGAAACTG-TCTCAAGAGAGACAAAATT
* *
787361 ATGTTTCAAGAGAAATTGTCTCAAGGGAGACAAAATTT
1 -TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA-TT
* *
787399 TGTTTCAAGGGAAACTATCTCAAGAGAGAC--AATT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT
* * * * *
787433 TATTTCAAGGGAAA-TGTTTTC-A-A-TG-----TTT
1 TGTTTCAAGAGAAACTG-TCTCAAGAGAGACAAAATT
* *
787461 ATGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTT
1 -TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA-TT
* *
787499 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAGTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT
*
787535 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAA
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAA
787567 TGGTGAGCAT
Statistics
Matches: 344, Mismatches: 52, Indels: 85
0.72 0.11 0.18
Matches are distributed among these distances:
28 5 0.01
29 49 0.14
30 31 0.09
31 1 0.00
32 5 0.01
33 5 0.01
34 20 0.06
35 7 0.02
36 111 0.32
37 90 0.26
38 20 0.06
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (36 bp):
TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT
Found at i:787256 original size:30 final size:30
Alignment explanation
Indices: 787220--787278 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
787210 GTAAAACATA
*
787220 TTCAAAGATTT-TGTTTCAAGGGAAACTGTT
1 TTCAAAG-TTTATGTTTCAAGAGAAACTGTT
*
787250 TTCAAAGTTTATGTTTCAATAGAAACTGT
1 TTCAAAGTTTATGTTTCAAGAGAAACTGT
787279 CTCAAAGGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 3 0.12
30 23 0.88
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.41
Consensus pattern (30 bp):
TTCAAAGTTTATGTTTCAAGAGAAACTGTT
Found at i:787468 original size:100 final size:100
Alignment explanation
Indices: 787166--787548 Score: 514
Period size: 100 Copynumber: 3.9 Consensus size: 100
787156 AGACAAAATT
* **
787166 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTT-AATGTAAAACATAT-TC-A-A-A
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAA-GGGAAAC-TATCTCAAGAGA
* * *
787226 G---ATTTTGTTTCAAGGGAAACTGTTTTCAAAGTTTA
64 GACAAATTTATTTCAAGGGAAA-TGTTTTCAATGTTTA
* *
787261 TGTTTCAATAGAAACTGTCTCAAAGGAGACAAAATTTGTTTCAAGGGAAACTATCTCAAGAGAGA
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAAGGGAAACTATCTCAAGAGAGA
* *
787326 CAAAATTCATTTCAAGGGAAATGCTTTCAATGTTTA
66 C-AAATTTATTTCAAGGGAAATGTTTTCAATGTTTA
*
787362 TGTTTCAAGAGAAATTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAA-TTTGTTTCAAGGGAAACTATCTCAAGAGAG
787427 AC-AATTTATTTCAAGGGAAATGTTTTCAATGTTTA
65 ACAAATTTATTTCAAGGGAAATGTTTTCAATGTTTA
* *
787462 TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTTTGTTTCAAGGGAAACTGTCTCAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAA-TTTGTTTCAAGGGAAACTATCTCAAGAGAG
*
787527 ACAAAGTTTGTTTCAAGGGAAA
65 ACAAA-TTTATTTCAAGGGAAA
787549 CTGTCTCAAG
Statistics
Matches: 257, Mismatches: 19, Indels: 17
0.88 0.06 0.06
Matches are distributed among these distances:
94 3 0.01
95 45 0.18
96 3 0.01
97 1 0.00
98 2 0.01
100 95 0.37
101 46 0.18
102 62 0.24
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.31
Consensus pattern (100 bp):
TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAAGGGAAACTATCTCAAGAGAGA
CAAATTTATTTCAAGGGAAATGTTTTCAATGTTTA
Found at i:788453 original size:22 final size:22
Alignment explanation
Indices: 788428--788478 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
788418 TTGTGTTTGG
788428 TCAAAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
*
788450 TCAAAGGTTTGGTATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
788472 TCAAAGG
1 TCAAAGG
788479 ATTGATGGGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.25, C:0.12, G:0.27, T:0.35
Consensus pattern (22 bp):
TCAAAGGTTTGGCATTTGATGC
Found at i:789119 original size:16 final size:17
Alignment explanation
Indices: 789100--789145 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
789090 TCTTTTTGAT
*
789100 TTTTGCTCTTTTTTC-C
1 TTTTGCTCTTGTTTCTC
*
789116 TTTTGTTCTTGTTTCTC
1 TTTTGCTCTTGTTTCTC
*
789133 TTTTTCT-TTGTTT
1 TTTTGCTCTTGTTT
789146 TTTTTTTTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
16 19 0.76
17 6 0.24
ACGTcount: A:0.00, C:0.17, G:0.09, T:0.74
Consensus pattern (17 bp):
TTTTGCTCTTGTTTCTC
Found at i:789179 original size:8 final size:8
Alignment explanation
Indices: 789106--789179 Score: 60
Period size: 8 Copynumber: 9.1 Consensus size: 8
789096 TGATTTTTGC
789106 TCTTTTTT
1 TCTTTTTT
* *
789114 CCTTTTGT
1 TCTTTTTT
*
789122 TC-TTGTT
1 TCTTTTTT
*
789129 TCTCTTTT
1 TCTTTTTT
789137 TCTTTGTTT
1 TCTTT-TTT
*
789146 TTTTTTTT
1 TCTTTTTT
789154 TACTTTTTT
1 T-CTTTTTT
* *
789163 GCTTCTTT
1 TCTTTTTT
789171 TCTTTTTT
1 TCTTTTTT
789179 T
1 T
789180 TTCTTGATTG
Statistics
Matches: 49, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
7 5 0.10
8 31 0.63
9 13 0.27
ACGTcount: A:0.01, C:0.15, G:0.05, T:0.78
Consensus pattern (8 bp):
TCTTTTTT
Found at i:792768 original size:15 final size:15
Alignment explanation
Indices: 792750--792779 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
792740 AAAACCATGT
792750 TAGATAAAAAGGTAA
1 TAGATAAAAAGGTAA
*
792765 TAGATTAAAAGGTAA
1 TAGATAAAAAGGTAA
792780 GAAATAAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.20, T:0.23
Consensus pattern (15 bp):
TAGATAAAAAGGTAA
Found at i:792908 original size:13 final size:13
Alignment explanation
Indices: 792866--792924 Score: 50
Period size: 13 Copynumber: 4.6 Consensus size: 13
792856 AAATAGTAAG
*
792866 TAAAATAAATATAA
1 TAAAATAAAGA-AA
792880 -AAAA-AAAGAAA
1 TAAAATAAAGAAA
* *
792891 AAAAATATAGAAA
1 TAAAATAAAGAAA
* *
792904 TAAAACAAATAAA
1 TAAAATAAAGAAA
792917 TAAAATAA
1 TAAAATAA
792925 TAATAAAAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
11 2 0.06
12 8 0.22
13 26 0.72
ACGTcount: A:0.78, C:0.02, G:0.03, T:0.17
Consensus pattern (13 bp):
TAAAATAAAGAAA
Found at i:792908 original size:38 final size:37
Alignment explanation
Indices: 792866--792978 Score: 104
Period size: 38 Copynumber: 2.9 Consensus size: 37
792856 AAATAGTAAG
*
792866 TAAAATAAATATAAAAAAAAAGAAAAAAAATA-TAGAAA
1 TAAAATAAATATAAAAAAAAA-AAAAAAAA-AGTAAAAA
* * *
792904 TAAAACAAATA-AATAAAATAATAATAAAAAAGTAAAAA
1 TAAAATAAATATAA-AAAA-AAAAAAAAAAAAGTAAAAA
* *
792942 TAATATATATATAAAATAAAAAAATAAAAAAAGTAAA
1 TAAAATAAATATAAAA-AAAAAAA-AAAAAAAGTAAA
792979 TATATATATA
Statistics
Matches: 60, Mismatches: 9, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
37 3 0.05
38 40 0.67
39 17 0.28
ACGTcount: A:0.76, C:0.01, G:0.04, T:0.19
Consensus pattern (37 bp):
TAAAATAAATATAAAAAAAAAAAAAAAAAAGTAAAAA
Found at i:792947 original size:49 final size:47
Alignment explanation
Indices: 792867--792970 Score: 129
Period size: 49 Copynumber: 2.2 Consensus size: 47
792857 AATAGTAAGT
792867 AAAAT-AAATATAAAAAAAAAGAAAAAAAATATAGAAATAAAACAAA
1 AAAATAAAATATAAAAAAAAAGAAAAAAAATATAGAAATAAAACAAA
* * * * * *
792913 TAAATAAAATAATAATAAAAAAGTAAAAATAATATATATATAAAATAAA
1 AAAATAAAAT-ATAAAAAAAAAG-AAAAAAAATATAGAAATAAAACAAA
792962 AAAATAAAA
1 AAAATAAAA
792971 AAAGTAAATA
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
46 4 0.08
47 4 0.08
48 11 0.23
49 29 0.60
ACGTcount: A:0.77, C:0.01, G:0.03, T:0.19
Consensus pattern (47 bp):
AAAATAAAATATAAAAAAAAAGAAAAAAAATATAGAAATAAAACAAA
Found at i:792959 original size:41 final size:39
Alignment explanation
Indices: 792910--793013 Score: 122
Period size: 39 Copynumber: 2.6 Consensus size: 39
792900 GAAATAAAAC
792910 AAATAAATAAAATAATAATAAAAAAGTAAAAATAATATAT
1 AAATAAATAAAATAATAATAAAAAAGTAAAAAT-ATATAT
* * *
792950 ATATAAAATAAAAAAAT-A-AAAAAAGTAAATATATATAT
1 AAAT-AAATAAAATAATAATAAAAAAGTAAAAATATATAT
* *
792988 AAATTAATAAAACTGATAATAAAAAA
1 AAATAAATAAAA-TAATAATAAAAAA
793014 TAATATATTT
Statistics
Matches: 53, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
37 7 0.13
38 11 0.21
39 14 0.26
40 10 0.19
41 11 0.21
ACGTcount: A:0.71, C:0.01, G:0.03, T:0.25
Consensus pattern (39 bp):
AAATAAATAAAATAATAATAAAAAAGTAAAAATATATAT
Found at i:792962 original size:30 final size:33
Alignment explanation
Indices: 792892--792999 Score: 93
Period size: 34 Copynumber: 3.4 Consensus size: 33
792882 AAAAAGAAAA
* * *
792892 AAAATATAGAAATAAAACAAATAAATA-A-A-AT
1 AAAATAAAAAAATAAAA-AAGTAAATATATATAT
*
792923 AATAATAAAAAAGT-AAAAA-T-AATATATATAT
1 AA-AATAAAAAAATAAAAAAGTAAATATATATAT
792954 AAAATAAAAAAATAAAAAAAGTAAATATATATAT
1 AAAATAAAAAAAT-AAAAAAGTAAATATATATAT
* *
792988 AAATTAATAAAA
1 AAAATAAAAAAA
793000 CTGATAATAA
Statistics
Matches: 63, Mismatches: 6, Indels: 13
0.77 0.07 0.16
Matches are distributed among these distances:
28 4 0.06
29 2 0.03
30 13 0.21
31 9 0.14
32 13 0.21
33 1 0.02
34 21 0.33
ACGTcount: A:0.72, C:0.01, G:0.03, T:0.24
Consensus pattern (33 bp):
AAAATAAAAAAATAAAAAAGTAAATATATATAT
Found at i:792979 original size:21 final size:20
Alignment explanation
Indices: 792867--792980 Score: 79
Period size: 21 Copynumber: 5.5 Consensus size: 20
792857 AATAGTAAGT
792867 AAAATAAATATAAAAAA-AAA
1 AAAATAAATA-AAAAAATAAA
* * *
792887 GAAAAAAAATATAGAAATAAA
1 -AAAATAAATAAAAAAATAAA
* *
792908 ACAAATAAATAAAATAATAAT
1 A-AAATAAATAAAAAAATAAA
* *
792929 AAAA-AAGTAAAAATAATATA
1 AAAATAAATAAAAA-AATAAA
* *
792949 TATATAAAATAAAAAAATAAA
1 AAAAT-AAATAAAAAAATAAA
792970 AAAAGTAAATA
1 AAAA-TAAATA
792981 TATATATAAA
Statistics
Matches: 69, Mismatches: 18, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
19 7 0.10
20 14 0.20
21 39 0.57
22 9 0.13
ACGTcount: A:0.76, C:0.01, G:0.04, T:0.19
Consensus pattern (20 bp):
AAAATAAATAAAAAAATAAA
Found at i:792984 original size:36 final size:40
Alignment explanation
Indices: 792914--793049 Score: 108
Period size: 37 Copynumber: 3.5 Consensus size: 40
792904 TAAAACAAAT
*
792914 AAATAAAATAATAATAAAAAAGTAAAAATAATATATATATA
1 AAATAAAAAAATAATAAAAAAGT-AAAATAATATATATATA
792955 AAATAAAAAAAT-A-AAAAAAGT-AAAT-ATATATATA-A
1 AAATAAAAAAATAATAAAAAAGTAAAATAATATATATATA
** * *
792990 ATTAATAAAACTGATAATAAAAAA-TAATAT-ATTTATATATA
1 A--AATAAAA-AAATAATAAAAAAGTAAAATAATATATATATA
** *
793031 ATCTAAATAAA-AATAAAAA
1 AAATAAAAAAATAATAAAAA
793050 TATATACTAA
Statistics
Matches: 78, Mismatches: 10, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
35 2 0.03
36 9 0.12
37 19 0.24
38 3 0.04
39 14 0.18
40 18 0.23
41 13 0.17
ACGTcount: A:0.68, C:0.01, G:0.02, T:0.28
Consensus pattern (40 bp):
AAATAAAAAAATAATAAAAAAGTAAAATAATATATATATA
Found at i:792986 original size:38 final size:38
Alignment explanation
Indices: 792914--793049 Score: 105
Period size: 38 Copynumber: 3.4 Consensus size: 38
792904 TAAAACAAAT
* *
792914 AAATAAAATAATAATAAAAAAGTAAAAATAATATATATATA
1 AAATAAAAAAAT-A-AAAAAAGTAAATAT-ATATATATATA
*
792955 AAATAAAAAAATAAAAAAAGTAAATATATATATAAAT-
1 AAATAAAAAAATAAAAAAAGTAAATATATATATATATA
* ** * *
792992 TAATAAAACTGATAATAAAAAAT-AATATATTTATATATA
1 AAATAAAA-AAATAA-AAAAAGTAAATATATATATATATA
**
793031 ATCTAAATAAAAATAAAAA
1 AAAT-AA-AAAAATAAAAA
793050 TATATACTAA
Statistics
Matches: 76, Mismatches: 14, Indels: 12
0.75 0.14 0.12
Matches are distributed among these distances:
37 7 0.09
38 26 0.34
39 23 0.30
40 7 0.09
41 13 0.17
ACGTcount: A:0.68, C:0.01, G:0.02, T:0.28
Consensus pattern (38 bp):
AAATAAAAAAATAAAAAAAGTAAATATATATATATATA
Found at i:793059 original size:23 final size:26
Alignment explanation
Indices: 793024--793080 Score: 68
Period size: 24 Copynumber: 2.3 Consensus size: 26
793014 TAATATATTT
793024 ATATATAATCTAAA-TAAAAATA-AAA
1 ATATATAATCTAAAGTAAAAA-AGAAA
793049 ATATAT-A-CTAAAGTAAAAAAGAAA
1 ATATATAATCTAAAGTAAAAAAGAAA
*
793073 ATACATAA
1 ATATATAA
793081 AATGTAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
23 6 0.21
24 15 0.54
25 7 0.25
ACGTcount: A:0.67, C:0.05, G:0.04, T:0.25
Consensus pattern (26 bp):
ATATATAATCTAAAGTAAAAAAGAAA
Found at i:793073 original size:24 final size:23
Alignment explanation
Indices: 793024--793093 Score: 65
Period size: 24 Copynumber: 3.0 Consensus size: 23
793014 TAATATATTT
793024 ATATATAATCTAAA-TAAAAATAAAA
1 ATATAT-A-CTAAAGTAAAAA-AAAA
793049 ATATATACTAAAGTAAAAAAGAAA
1 ATATATACTAAAGTAAAAAA-AAA
*
793073 ATACATA--AAATGTAAAAAAAA
1 ATATATACTAAA-GTAAAAAAAA
793094 TATTACATGA
Statistics
Matches: 41, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
22 5 0.12
23 14 0.34
24 16 0.39
25 6 0.15
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.23
Consensus pattern (23 bp):
ATATATACTAAAGTAAAAAAAAA
Found at i:793100 original size:23 final size:22
Alignment explanation
Indices: 793045--793106 Score: 58
Period size: 23 Copynumber: 2.8 Consensus size: 22
793035 AAATAAAAAT
793045 AAAAATATATAC-T-AAAGTAAA
1 AAAAATAT-TACATAAAAGTAAA
*
793066 AAAGAA-AATACATAAAATGTAAA
1 AAA-AATATTACATAAAA-GTAAA
793089 AAAAATATTACATGAAAA
1 AAAAATATTACAT-AAAA
793107 AAAAAAGAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
20 3 0.09
21 5 0.15
22 7 0.21
23 14 0.42
24 4 0.12
ACGTcount: A:0.68, C:0.05, G:0.06, T:0.21
Consensus pattern (22 bp):
AAAAATATTACATAAAAGTAAA
Found at i:793471 original size:34 final size:34
Alignment explanation
Indices: 793428--793496 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
793418 GAATCCTAGC
793428 AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
1 AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
* *
793462 AAAATTCTATCCTATTTTTAGGAGTTTGAATCCT
1 AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
793496 A
1 A
793497 GTAGGACGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.42
Consensus pattern (34 bp):
AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
Found at i:794344 original size:21 final size:21
Alignment explanation
Indices: 794318--794358 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
794308 AACATTATCT
**
794318 AACAAACTTGACTTCCATAAC
1 AACAAACTTGAAATCCATAAC
794339 AACAAACTTGAAATCCATAA
1 AACAAACTTGAAATCCATAA
794359 TAATAAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.49, C:0.24, G:0.05, T:0.22
Consensus pattern (21 bp):
AACAAACTTGAAATCCATAAC
Found at i:796897 original size:3 final size:3
Alignment explanation
Indices: 796889--796933 Score: 56
Period size: 3 Copynumber: 14.7 Consensus size: 3
796879 CTACAAAAAG
*
796889 ATT ATT ATTT ATT ATT ATT ATT ATT ATT ATT AAAT ATT -TT ATT AT
1 ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT AT
796934 AATTTTTGTA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
2 2 0.05
3 30 0.81
4 5 0.14
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:798567 original size:30 final size:30
Alignment explanation
Indices: 798533--798642 Score: 109
Period size: 30 Copynumber: 3.7 Consensus size: 30
798523 TTTATTTGCA
*
798533 TTTACTATTTCAGTCCTTTAACTTTCTATT
1 TTTACTATTTCAGTCCTTTAAATTTCTATT
* * *
798563 TTTACTATTTTAATCCTTTAAGTTTCTATT
1 TTTACTATTTCAGTCCTTTAAATTTCTATT
* *
798593 TTT--TGTTGTCTTAGTCCTATAAATTTCTATT
1 TTTACTATT-TC--AGTCCTTTAAATTTCTATT
*
798624 TTTGCTATTT-AGTCCTTTA
1 TTTACTATTTCAGTCCTTTA
798643 TTTAACTAAG
Statistics
Matches: 65, Mismatches: 10, Indels: 11
0.76 0.12 0.13
Matches are distributed among these distances:
28 3 0.05
29 9 0.14
30 30 0.46
31 19 0.29
32 1 0.02
33 3 0.05
ACGTcount: A:0.20, C:0.15, G:0.06, T:0.58
Consensus pattern (30 bp):
TTTACTATTTCAGTCCTTTAAATTTCTATT
Found at i:798933 original size:5 final size:5
Alignment explanation
Indices: 798919--798960 Score: 66
Period size: 5 Copynumber: 8.4 Consensus size: 5
798909 TCACTTTTCA
* *
798919 ATTTT ATTTT GTTTT ATTTT ATTTT ATTGT ATTTT ATTTT AT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT AT
798961 CTTGGTGAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.19, C:0.00, G:0.05, T:0.76
Consensus pattern (5 bp):
ATTTT
Found at i:802408 original size:26 final size:27
Alignment explanation
Indices: 802358--802496 Score: 91
Period size: 25 Copynumber: 5.1 Consensus size: 27
802348 CAAATTAAAG
802358 CAAAGAAAAAAACAAAGAGAAAAGAAT
1 CAAAGAAAAAAACAAAGAGAAAAGAAT
802385 CAAAGAAAAAAAAAATTGCAAAGAGGAAAA-AAT
1 CAAAG---AAAAAAA---CAAAGA-GAAAAGAAT
* *
802418 CAAAGAGAAAAA-AAA-AGCAAAG-A-
1 CAAAGAAAAAAACAAAGAGAAAAGAAT
802441 -AAAGAAAAAAGAACAAAGA-AAAA-AA-
1 CAAAG-AAAAA-AACAAAGAGAAAAGAAT
802466 CAAAAGAAAAAAACAAAGA-AAAAGAAGT
1 C-AAAGAAAAAAACAAAGAGAAAAGAA-T
802494 CAA
1 CAA
802497 GAAGCACACG
Statistics
Matches: 90, Mismatches: 4, Indels: 36
0.69 0.03 0.28
Matches are distributed among these distances:
22 4 0.04
23 4 0.04
24 7 0.08
25 20 0.22
26 11 0.12
27 11 0.12
28 1 0.01
30 13 0.14
33 14 0.16
34 5 0.06
ACGTcount: A:0.75, C:0.07, G:0.14, T:0.04
Consensus pattern (27 bp):
CAAAGAAAAAAACAAAGAGAAAAGAAT
Found at i:802409 original size:33 final size:29
Alignment explanation
Indices: 802349--802488 Score: 106
Period size: 32 Copynumber: 4.5 Consensus size: 29
802339 TGCAGATATC
*
802349 AAATTAAAGCAAAGAAAAAAA-CAAAGAGAAA
1 AAATCAAAG-AAA-AAAAAAAGCAAA-AGAAA
802380 AGAATCAAAGAAAAAAAAAATTGCAAAGAGGAAA
1 A-AATCAAAGAAAAAAAAAA--GCAAA-A-GAAA
802414 AAATCAAAGAGAAAAAAAAAGC-AAAGAAA
1 AAATCAAAGA-AAAAAAAAAGCAAAAGAAA
* *
802443 AGAA-AAAAGAACAAAGAAAAAAACAAAAGAAA
1 A-AATCAAAG-A-AAA-AAAAAAGCAAAAGAAA
*
802475 AAAACAAAGAAAAA
1 AAATCAAAGAAAAA
802489 GAAGTCAAGA
Statistics
Matches: 93, Mismatches: 5, Indels: 24
0.76 0.04 0.20
Matches are distributed among these distances:
29 10 0.11
30 17 0.18
31 16 0.17
32 21 0.23
33 15 0.16
34 14 0.15
ACGTcount: A:0.76, C:0.06, G:0.14, T:0.04
Consensus pattern (29 bp):
AAATCAAAGAAAAAAAAAAGCAAAAGAAA
Found at i:802414 original size:17 final size:14
Alignment explanation
Indices: 802358--802430 Score: 69
Period size: 17 Copynumber: 4.9 Consensus size: 14
802348 CAAATTAAAG
802358 CAAAGA-AAAAAA-
1 CAAAGAGAAAAAAT
802370 CAAAGAGAAAAGAAT
1 CAAAGAGAAAA-AAT
*
802385 CAAAGAAAAAAAAAATT
1 CAAAG--AGAAAAAA-T
802402 GCAAAGAGGAAAAAAT
1 -CAAAGA-GAAAAAAT
802418 CAAAGAGAAAAAA
1 CAAAGAGAAAAAA
802431 AAAGCAAAGA
Statistics
Matches: 51, Mismatches: 2, Indels: 14
0.76 0.03 0.21
Matches are distributed among these distances:
12 6 0.12
13 4 0.08
14 9 0.18
15 11 0.22
16 4 0.08
17 12 0.24
18 5 0.10
ACGTcount: A:0.73, C:0.07, G:0.15, T:0.05
Consensus pattern (14 bp):
CAAAGAGAAAAAAT
Found at i:802422 original size:48 final size:45
Alignment explanation
Indices: 802358--802488 Score: 142
Period size: 45 Copynumber: 2.8 Consensus size: 45
802348 CAAATTAAAG
* ***
802358 CAAAGA-AAAAAACAAAGAGAAAAGAATCAAAGAAAAAAAAAATTG
1 CAAAGAGAAAAAACAAAGAGAAAA-AAACAAAGAAAAAAAAAAGAA
802403 CAAAGAGGAAAAAATCAAAGAGAAAAAAAAAGCAAAGAAAAGAAAAAAGAA
1 CAAAGA-GAAAAAA-CAAAGAG--AAAAAAA-CAAAGAAAA-AAAAAAGAA
802454 CAAAGA-AAAAAACAAA-AGAAAAAAACAAAGAAAAA
1 CAAAGAGAAAAAACAAAGAGAAAAAAACAAAGAAAAA
802489 GAAGTCAAGA
Statistics
Matches: 75, Mismatches: 4, Indels: 16
0.79 0.04 0.17
Matches are distributed among these distances:
43 1 0.01
44 9 0.12
45 13 0.17
47 8 0.11
48 11 0.15
49 8 0.11
50 13 0.17
51 12 0.16
ACGTcount: A:0.76, C:0.07, G:0.14, T:0.03
Consensus pattern (45 bp):
CAAAGAGAAAAAACAAAGAGAAAAAAACAAAGAAAAAAAAAAGAA
Found at i:802431 original size:15 final size:14
Alignment explanation
Indices: 802361--802488 Score: 80
Period size: 15 Copynumber: 8.4 Consensus size: 14
802351 ATTAAAGCAA
802361 AGAAAAAAACAAAG
1 AGAAAAAAACAAAG
*
802375 AGAAAAGAATCAAAG
1 AGAAAA-AAACAAAG
*
802390 AAAAAAAAAATTGCAAAG
1 -AGAAAAAAA---CAAAG
*
802408 AGGAAAAAATCAAAG
1 A-GAAAAAAACAAAG
802423 AGAAAAAAAAAGCAAAG
1 AG--AAAAAAA-CAAAG
* * *
802440 AAAAGAAAAAAGAACAA
1 -AGA-AAAAAACAA-AG
802457 AGAAAAAAACAAA-
1 AGAAAAAAACAAAG
802470 AGAAAAAAACAAAG
1 AGAAAAAAACAAAG
802484 A-AAAA
1 AGAAAA
802489 GAAGTCAAGA
Statistics
Matches: 90, Mismatches: 11, Indels: 27
0.70 0.09 0.21
Matches are distributed among these distances:
13 17 0.19
14 9 0.10
15 23 0.26
16 16 0.18
17 13 0.14
18 12 0.13
ACGTcount: A:0.77, C:0.06, G:0.14, T:0.03
Consensus pattern (14 bp):
AGAAAAAAACAAAG
Found at i:802448 original size:20 final size:19
Alignment explanation
Indices: 802423--802488 Score: 64
Period size: 20 Copynumber: 3.4 Consensus size: 19
802413 AAAATCAAAG
802423 AGAAAAAAAAAGCAAAGAAA
1 AGAAAAAAAAA-CAAAGAAA
*
802443 AGAAAAAAGAACAAAGAAA
1 AGAAAAAAAAACAAAGAAA
*
802462 A-AAACAAAAGAA-AAAAACAA
1 AGAAA-AAAA-AACAAAGA-AA
802482 AGAAAAA
1 AGAAAAA
802489 GAAGTCAAGA
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
18 3 0.08
19 16 0.41
20 17 0.44
21 3 0.08
ACGTcount: A:0.82, C:0.06, G:0.12, T:0.00
Consensus pattern (19 bp):
AGAAAAAAAAACAAAGAAA
Found at i:802452 original size:7 final size:7
Alignment explanation
Indices: 802440--802477 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
802430 AAAAGCAAAG
802440 AAAAGAA
1 AAAAGAA
802447 AAAAGAA
1 AAAAGAA
*
802454 CAAAGAA
1 AAAAGAA
*
802461 AAAA-AC
1 AAAAGAA
802467 AAAAGAA
1 AAAAGAA
802474 AAAA
1 AAAA
802478 ACAAAGAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
6 5 0.19
7 21 0.81
ACGTcount: A:0.84, C:0.05, G:0.11, T:0.00
Consensus pattern (7 bp):
AAAAGAA
Found at i:802463 original size:32 final size:31
Alignment explanation
Indices: 802359--802491 Score: 121
Period size: 33 Copynumber: 4.2 Consensus size: 31
802349 AAATTAAAGC
*
802359 AAAGAAAAAAACAAAGAGAAAAGAATCAAAGAA
1 AAAGAAAAAAACAAA-AGAAAA-AAACAAAGAA
** * *
802392 AAA-AAAAATTGCAAAGAGGAAAAAATCAAAGAG
1 AAAGAAAAA-AACAAA-A-GAAAAAAACAAAGAA
*
802425 AAA-AAAAAAGC-AAAGAAAAGAAA-AAAGAA
1 AAAGAAAAAAACAAAAGAAAA-AAACAAAGAA
802454 CAAAGAAAAAAACAAAAGAAAAAAACAAAGAA
1 -AAAGAAAAAAACAAAAGAAAAAAACAAAGAA
802486 AAAGAA
1 AAAGAA
802492 GTCAAGAAGC
Statistics
Matches: 86, Mismatches: 7, Indels: 16
0.79 0.06 0.15
Matches are distributed among these distances:
29 10 0.12
30 6 0.07
31 18 0.21
32 21 0.24
33 26 0.30
34 5 0.06
ACGTcount: A:0.77, C:0.06, G:0.14, T:0.03
Consensus pattern (31 bp):
AAAGAAAAAAACAAAAGAAAAAAACAAAGAA
Found at i:804514 original size:3 final size:3
Alignment explanation
Indices: 804501--804541 Score: 57
Period size: 3 Copynumber: 13.3 Consensus size: 3
804491 CTACAAAAAG
804501 ATT ATTT ATT ATT ATT ATT ATT A-T ATTT ATT ATT ATT ATT A
1 ATT A-TT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT A
804542 AATATTTTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
2 2 0.06
3 28 0.80
4 5 0.14
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:804551 original size:21 final size:21
Alignment explanation
Indices: 804503--804548 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
804493 ACAAAAAGAT
*
804503 TATTTATTATTATTATTATTA
1 TATTTATTATTATTATTAATA
804524 TATTTATTATTATTATTAA-A
1 TATTTATTATTATTATTAATA
804544 TATTT
1 TATTT
804549 TATAACAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 6 0.25
21 18 0.75
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (21 bp):
TATTTATTATTATTATTAATA
Found at i:805815 original size:19 final size:19
Alignment explanation
Indices: 805787--805834 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
805777 TTCAGTGTGT
*
805787 ATCGAGGCACAAGAAGTGC
1 ATCGATGCACAAGAAGTGC
*
805806 ATCGATGCACATGAAGTGC
1 ATCGATGCACAAGAAGTGC
805825 ATCGATGCAC
1 ATCGATGCAC
805835 CCTTAAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.33, C:0.23, G:0.27, T:0.17
Consensus pattern (19 bp):
ATCGATGCACAAGAAGTGC
Found at i:807481 original size:23 final size:23
Alignment explanation
Indices: 807455--807522 Score: 64
Period size: 23 Copynumber: 3.0 Consensus size: 23
807445 CATCTTATAT
* *
807455 GGCACTACGTTGCATTTCTATGC
1 GGCACTACGATGCATTTCTACGC
* * * *
807478 GGCACTTCGGTGCAATTCTACGT
1 GGCACTACGATGCATTTCTACGC
* *
807501 GGCACTCCGATGCATTTATACG
1 GGCACTACGATGCATTTCTACG
807523 AGATGTGGTG
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.19, C:0.26, G:0.24, T:0.31
Consensus pattern (23 bp):
GGCACTACGATGCATTTCTACGC
Found at i:811107 original size:24 final size:19
Alignment explanation
Indices: 811049--811098 Score: 100
Period size: 19 Copynumber: 2.6 Consensus size: 19
811039 ATACAATTAA
811049 TGCATCGATGCATAAGGAG
1 TGCATCGATGCATAAGGAG
811068 TGCATCGATGCATAAGGAG
1 TGCATCGATGCATAAGGAG
811087 TGCATCGATGCA
1 TGCATCGATGCA
811099 CATGTTAAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.30, C:0.18, G:0.30, T:0.22
Consensus pattern (19 bp):
TGCATCGATGCATAAGGAG
Found at i:811144 original size:20 final size:23
Alignment explanation
Indices: 811087--811144 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 23
811077 GCATAAGGAG
811087 TGCATCGATGCACATGTTAAGAGA
1 TGCATCGATGCAC-TGTTAAGAGA
* *
811111 TGCATCCATACACTG-T-AGA-A
1 TGCATCGATGCACTGTTAAGAGA
811131 TGCATCGATGCACT
1 TGCATCGATGCACT
811145 TCAAAGGGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
20 13 0.43
21 3 0.10
22 1 0.03
23 2 0.07
24 11 0.37
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (23 bp):
TGCATCGATGCACTGTTAAGAGA
Found at i:811879 original size:2 final size:2
Alignment explanation
Indices: 811872--811925 Score: 108
Period size: 2 Copynumber: 27.0 Consensus size: 2
811862 AAATTAAATA
811872 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
811914 AT AT AT AT AT AT
1 AT AT AT AT AT AT
811926 GTTTATAAGT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:812694 original size:23 final size:23
Alignment explanation
Indices: 812661--812705 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
812651 CATCTTATAT
812661 GGCACTACGGTG-AATTTCTACGC
1 GGCACTACGGTGCAA-TTCTACGC
*
812684 GGCACTTCGGTGCAATTCTACG
1 GGCACTACGGTGCAATTCTACG
812706 TGGTACTCTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 18 0.90
24 2 0.10
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.27
Consensus pattern (23 bp):
GGCACTACGGTGCAATTCTACGC
Found at i:813094 original size:2 final size:2
Alignment explanation
Indices: 813087--813123 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
813077 ATGTACCTGG
813087 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
813124 TTATGTTTGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:814790 original size:30 final size:30
Alignment explanation
Indices: 814728--814790 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
814718 TTTATTTTTA
*
814728 TTTACTATTTAAGTCCTTTAACTTTCTATT
1 TTTACTATTTAAGTCCTTTAACTTTATATT
* *
814758 TTTACTATTTTAA-TCCTTTAAGTTTATGTT
1 TTTACTA-TTTAAGTCCTTTAACTTTATATT
814788 TTT
1 TTT
814791 GTTGTCTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 24 0.83
31 5 0.17
ACGTcount: A:0.22, C:0.13, G:0.05, T:0.60
Consensus pattern (30 bp):
TTTACTATTTAAGTCCTTTAACTTTATATT
Found at i:816855 original size:41 final size:40
Alignment explanation
Indices: 816717--816863 Score: 120
Period size: 41 Copynumber: 3.6 Consensus size: 40
816707 TGTTTGTTAC
* * *
816717 GGCGTTTGTTTAAAAATACCACTATATATGAAACTTATTGC
1 GGCGTTTG-TTAAAAATGCCACTATATATGAAACCTATTGT
* * * * * * *
816758 GGCATTT-TCTAACAATCGCTACTA-AAAT-ACAAGTCTGTAGT
1 GGCGTTTGT-TAAAAAT-GCCACTATATATGA-AA-CCTATTGT
816799 GGCGTTTGTTAAAAAATGCCACTATATATGAAACCTATTGT
1 GGCGTTTGTT-AAAAATGCCACTATATATGAAACCTATTGT
816840 GGCGTTTGTGTAAAAATGCCACTA
1 GGCGTTTGT-TAAAAATGCCACTA
816864 AAGTACCAAT
Statistics
Matches: 80, Mismatches: 17, Indels: 18
0.70 0.15 0.16
Matches are distributed among these distances:
39 2 0.03
40 11 0.14
41 54 0.68
42 12 0.15
43 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Consensus pattern (40 bp):
GGCGTTTGTTAAAAATGCCACTATATATGAAACCTATTGT
Found at i:816864 original size:82 final size:81
Alignment explanation
Indices: 816674--816865 Score: 233
Period size: 82 Copynumber: 2.3 Consensus size: 81
816664 TCATTTTATA
* * * *
816674 GTGGCGTTTTCTAAAAAATGCCACTAAAGTACATGTTTGTTACGGCGTTTGTTTAAAAATACCAC
1 GTGGCGTTTTCT-AAAAATGCCACTAAAATACAAGTCTGTTACGGCGTTTGTTAAAAAATACCAC
*
816739 TATATATGAAACTTATT
65 TATATATGAAACCTATT
* * * * * *
816756 GCGGCATTTTCTAACAATCGCTACTAAAATACAAGTCTG-TAGTGGCGTTTGTTAAAAAATGCCA
1 GTGGCGTTTTCTAAAAAT-GCCACTAAAATACAAGTCTGTTA-CGGCGTTTGTTAAAAAATACCA
816820 CTATATATGAAACCTATT
64 CTATATATGAAACCTATT
*
816838 GTGGCGTTTGTGTAAAAATGCCACTAAA
1 GTGGCGTTT-TCTAAAAATGCCACTAAA
816866 GTACCAATTT
Statistics
Matches: 91, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
81 7 0.08
82 77 0.85
83 7 0.08
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Consensus pattern (81 bp):
GTGGCGTTTTCTAAAAATGCCACTAAAATACAAGTCTGTTACGGCGTTTGTTAAAAAATACCACT
ATATATGAAACCTATT
Found at i:816896 original size:82 final size:79
Alignment explanation
Indices: 816674--816943 Score: 231
Period size: 82 Copynumber: 3.3 Consensus size: 79
816664 TCATTTTATA
* * *
816674 GTGGCGTTTTCTAAAAAATGCCACTAAAGTACATGTTTGTTACGGCGTTTGTTTAAAAATACCAC
1 GTGGCGTTTTCT-AAAAATGCCACTAAAGTACA-ATTTGTTGCGGCGTTTG-TTAAAAATGCCAC
*
816739 TATATATGAAACTTATT
63 TATATATGAAACCTATT
* * * * * * * *
816756 GCGGCATTTTCTAACAATCGCTACTAAAATACAAGTCTGTAGTGGCGTTTGTTAAAAAATGCCAC
1 GTGGCGTTTTCTAAAAAT-GCCACTAAAGTACAA-TTTGTTGCGGCGTTTGTT-AAAAATGCCAC
816821 TATATATGAAACCTATT
63 TATATATGAAACCTATT
* * *
816838 GTGGCGTTTGTGTAAAAATGCCACTAAAGTACCAATTTGTTGCGGTGGTTT-TCTAAAAACGCCA
1 GTGGCGTTT-TCTAAAAATGCCACTAAAGTA-CAATTTGTTGCGG-CGTTTGT-TAAAAATGCCA
*
816902 -TGATATATGTATA-CTATT
62 CT-ATATATG-AAACCTATT
* * *
816920 GCGGAGTTTATCTAAAAACGCCAC
1 GTGGCGTTT-TCTAAAAATGCCAC
816944 AATATATGTA
Statistics
Matches: 150, Mismatches: 29, Indels: 18
0.76 0.15 0.09
Matches are distributed among these distances:
81 8 0.05
82 125 0.83
83 17 0.11
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (79 bp):
GTGGCGTTTTCTAAAAATGCCACTAAAGTACAATTTGTTGCGGCGTTTGTTAAAAATGCCACTAT
ATATGAAACCTATT
Found at i:816977 original size:41 final size:41
Alignment explanation
Indices: 816885--816961 Score: 111
Period size: 41 Copynumber: 1.9 Consensus size: 41
816875 TGTTGCGGTG
** *
816885 GTTT-TCTAAAAACGCCATGATATATGTATACTATTGCGGA
1 GTTTATCTAAAAACGCCACAATATATGTACACTATTGCGGA
*
816925 GTTTATCTAAAAACGCCACAATATATGTACCCTATTG
1 GTTTATCTAAAAACGCCACAATATATGTACACTATTG
816962 TGACGTTTGT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
40 4 0.12
41 28 0.88
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34
Consensus pattern (41 bp):
GTTTATCTAAAAACGCCACAATATATGTACACTATTGCGGA
Found at i:818346 original size:24 final size:23
Alignment explanation
Indices: 818318--818366 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 23
818308 TTTACCAGTT
*
818318 TAATTTAATATATAAAATTATTAA
1 TAATTAAATATATAAAATTA-TAA
* *
818342 TAATTAAATATGTAATATTATAA
1 TAATTAAATATATAAAATTATAA
818365 TA
1 TA
818367 TATAAAAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 5 0.23
24 17 0.77
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (23 bp):
TAATTAAATATATAAAATTATAA
Found at i:830897 original size:3 final size:3
Alignment explanation
Indices: 830889--830963 Score: 80
Period size: 3 Copynumber: 25.0 Consensus size: 3
830879 AATGAACAAT
* * * *
830889 TTA TTA TTA ATA TTA TTA -TA ATA ATA TTAA TAA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA
* *
830934 TAA TTA TTA TTA TTA CTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
830964 GCATTGATAA
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
2 2 0.03
3 57 0.93
4 2 0.03
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.57
Consensus pattern (3 bp):
TTA
Found at i:837575 original size:20 final size:21
Alignment explanation
Indices: 837531--837584 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
837521 TACTCATGCA
* *
837531 AGTATCAATACCCCAGCATAAG
1 AGTATCAATA-CTCAGCACAAG
837553 AGTATCAATACTCAG-ACAAG
1 AGTATCAATACTCAGCACAAG
*
837573 AGTATCGATACT
1 AGTATCAATACT
837585 AACTTAGCCA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 15 0.52
21 4 0.14
22 10 0.34
ACGTcount: A:0.41, C:0.22, G:0.15, T:0.22
Consensus pattern (21 bp):
AGTATCAATACTCAGCACAAG
Found at i:837660 original size:20 final size:20
Alignment explanation
Indices: 837637--837686 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
837627 CAATAGGTGG
* *
837637 GTATCGATACTAAAGGTCTA
1 GTATCGATACTAAAGGGCCA
* * *
837657 GTATCAATATTGAAGGGCCA
1 GTATCGATACTAAAGGGCCA
837677 GTATCGATAC
1 GTATCGATAC
837687 CCAAAGATAT
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (20 bp):
GTATCGATACTAAAGGGCCA
Found at i:842218 original size:13 final size:14
Alignment explanation
Indices: 842195--842224 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
842185 ATTATTGTTT
842195 TTTGTTTTTTTTTC
1 TTTGTTTTTTTTTC
842209 TTTG-TTTTTTTTC
1 TTTGTTTTTTTTTC
842222 TTT
1 TTT
842225 AGTTACTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.00, C:0.07, G:0.07, T:0.87
Consensus pattern (14 bp):
TTTGTTTTTTTTTC
Found at i:843251 original size:104 final size:103
Alignment explanation
Indices: 843052--843250 Score: 276
Period size: 104 Copynumber: 1.9 Consensus size: 103
843042 ATGACTCTAT
*
843052 TTGACTAACTTGGGGTGGAAAGTATGCTCCCTTTAACTTAGAGTATGGGATGGTAGGTGTGATGG
1 TTGACTAACTTGGGGTGGAAAGTATGCTCCCTTTAACTTAGAGTATGGGATGGTAGGTGTGATGA
*
843117 GCTGACTCCCCTCGAAGCAGTGTTAAAAAAAACTTTAC
66 GCTAACTCCCCTCGAAGCAGTGTTAAAAAAAACTTTAC
* * * * *
843155 TTGACTAGCTCTGGGGTGGAAGGTATGCTCCCTTTCACTTAGAGTGTGGGATGGTA-GTGTTATG
1 TTGACTAACT-TGGGGTGGAAAGTATGCTCCCTTTAACTTAGAGTATGGGATGGTAGGTGTGATG
* * * *
843219 AGCTAATTCTCCTTGAAGTA-TGTTAAAAAAAA
65 AGCTAACTCCCCTCGAAGCAGTGTTAAAAAAAA
843251 ATTGAAGTTA
Statistics
Matches: 84, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
102 12 0.14
103 30 0.36
104 42 0.50
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (103 bp):
TTGACTAACTTGGGGTGGAAAGTATGCTCCCTTTAACTTAGAGTATGGGATGGTAGGTGTGATGA
GCTAACTCCCCTCGAAGCAGTGTTAAAAAAAACTTTAC
Found at i:850265 original size:90 final size:90
Alignment explanation
Indices: 850140--850333 Score: 334
Period size: 90 Copynumber: 2.2 Consensus size: 90
850130 CGTCGAGTAG
* ** *
850140 TATTGCCATAGCAACCGTCTAAGAATACTCAATAATCCTGTTGGGCAACCTAAGTATATCATACC
1 TATTGCCATAGCAACCATCTAAGAATACTCAATAATCCTGTCAGGCAACCTAAGCATATCATACC
*
850205 AAATCATTCTTAGCATAAAGTAACT
66 AAATCATTCTTAGCATAAAATAACT
850230 TATTGCCATAGCAACCATCTAAGAATACTCAATAATCCTGTCAGGCAACCTAAGCATATCATACC
1 TATTGCCATAGCAACCATCTAAGAATACTCAATAATCCTGTCAGGCAACCTAAGCATATCATACC
850295 AAATCATTCTTAGCATAAAATAACT
66 AAATCATTCTTAGCATAAAATAACT
*
850320 TCTTGCCATAGCAA
1 TATTGCCATAGCAA
850334 AACCAACCTA
Statistics
Matches: 98, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
90 98 1.00
ACGTcount: A:0.38, C:0.24, G:0.11, T:0.28
Consensus pattern (90 bp):
TATTGCCATAGCAACCATCTAAGAATACTCAATAATCCTGTCAGGCAACCTAAGCATATCATACC
AAATCATTCTTAGCATAAAATAACT
Found at i:855657 original size:157 final size:151
Alignment explanation
Indices: 855340--855701 Score: 483
Period size: 157 Copynumber: 2.4 Consensus size: 151
855330 TATGAAAATT
* * * * *
855340 TGGTTCAAATTTGGTAAAAAGGGACCTAAAATAAATCACAAATTGAATG-AATAAGGAGATTATG
1 TGGTTCAAATTTGGTAAAAAGAGACTTAAAATAAATGACGAATTGAA-GAAATAAAGAGATTATG
* * *
855404 AAAAATTGAAGGACTAAATTGAAAAAAAAAATTATCAAAAAGAAGAATTGAAAGTACACATGTAT
65 AAAAATTCAAAGACTAAATTGAAAAAAAAAATTATAAAAAAGAAGAATTGAAAGTACACATGTAT
*
855469 TCCACTATGGTTTAGAAGCATG
130 TCCACTATGGTCTAGAAGCATG
*
855491 TGGCTCAAATTTGGTAAAAAGAGACTTAAAATAAATGACGAATTGAAGAAATAAAGAGATTATGA
1 TGGTTCAAATTTGGTAAAAAGAGACTTAAAATAAATGACGAATTGAAGAAATAAAGAGATTATGA
* * *
855556 AAATTTCAAAGATTAAATTGAAAAATAAAAAAATTGTTATAAAAAAGATGAATTGAAAGTACACA
66 AAAATTCAAAGACTAAATTG--AAA-AAAAAAA---TTATAAAAAAGAAGAATTGAAAGTACACA
*
855621 TGTATTCTACTATGGTCTAGAAGCATG
125 TGTATTCCACTATGGTCTAGAAGCATG
* * * * *
855648 TGGTTCAAATTTGGTAAAAATAAACTTAAAATGAAGGAGGAATTGAAGAAATAA
1 TGGTTCAAATTTGGTAAAAAGAGACTTAAAATAAATGACGAATTGAAGAAATAA
855702 TAAAATAGGA
Statistics
Matches: 184, Mismatches: 20, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
150 1 0.01
151 73 0.40
153 3 0.02
154 7 0.04
157 100 0.54
ACGTcount: A:0.49, C:0.07, G:0.18, T:0.26
Consensus pattern (151 bp):
TGGTTCAAATTTGGTAAAAAGAGACTTAAAATAAATGACGAATTGAAGAAATAAAGAGATTATGA
AAAATTCAAAGACTAAATTGAAAAAAAAAATTATAAAAAAGAAGAATTGAAAGTACACATGTATT
CCACTATGGTCTAGAAGCATG
Found at i:860163 original size:38 final size:38
Alignment explanation
Indices: 860121--860359 Score: 204
Period size: 36 Copynumber: 6.3 Consensus size: 38
860111 TTTATAATAT
*
860121 ATATATATATATTATATAATTTTGAAAACATTTTAAAA
1 ATATATATATATTATATAATTTTTAAAACATTTTAAAA
* *
860159 ATATATATGATA--A-ATAGTTTTTAAAAAATTTTAAAA
1 ATATATAT-ATATTATATAATTTTTAAAACATTTTAAAA
* * * *
860195 ACACATATATATTATATAGTTTTTAAAACATTTTGAAA
1 ATATATATATATTATATAATTTTTAAAACATTTTAAAA
*
860233 ATATATATA-A-TATAAAATTTTTAAAACATTTTGAATTTGAA
1 ATATATATATATTATATAATTTTTAAAACATTTT-AA----AA
* * * *
860274 AGCATTTATATATTATATAGTTTTTAAAACGTTTTTAAAA
1 A-TATATATATATTATATAATTTTTAAAAC-ATTTTAAAA
* * ** *
860314 ATAAATATATAATATATAA-TTTTAAAGTATTTTTAAA
1 ATATATATATATTATATAATTTTTAAAACATTTTAAAA
860351 AT-TATATAT
1 ATATATATAT
860360 TATATAGATT
Statistics
Matches: 161, Mismatches: 27, Indels: 28
0.75 0.12 0.13
Matches are distributed among these distances:
35 3 0.02
36 52 0.32
37 13 0.08
38 43 0.27
39 16 0.10
40 3 0.02
41 3 0.02
42 6 0.04
43 1 0.01
44 17 0.11
45 4 0.02
ACGTcount: A:0.48, C:0.03, G:0.05, T:0.45
Consensus pattern (38 bp):
ATATATATATATTATATAATTTTTAAAACATTTTAAAA
Found at i:860203 original size:74 final size:74
Alignment explanation
Indices: 860125--860336 Score: 219
Period size: 74 Copynumber: 2.7 Consensus size: 74
860115 TAATATATAT
* *
860125 ATATATATTATATAATTTTGAAAACATTTTAAAAATATATATGATA-AATAGTTTTTAAAAAATT
1 ATATATATTATATAATTTTGAAAACATTTTAAAAATATATATAATATAA-AATTTTTAAAAAATT
860189 TTAAAAACAC
65 TTAAAAACAC
* * * *
860199 ATATATATTATATAGTTTTTAAAACATTTTGAAAATATATATAATATAAAATTTTTAAAACATTT
1 ATATATATTATATAATTTTGAAAACATTTTAAAAATATATATAATATAAAATTTTTAAAAAATTT
*
860264 TGAATTTGAAAGCAT
66 T-AA----AAA-CAC
* * * * *
860279 TTATATATTATATAGTTTTTAAAACGTTTTTAAAAATAAATATATAATATATAATTTT
1 ATATATATTATATAATTTTGAAAAC-ATTTTAAAAAT--ATATATAATATAAAATTTT
860337 AAAGTATTTT
Statistics
Matches: 117, Mismatches: 11, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
74 57 0.49
75 4 0.03
79 3 0.03
80 26 0.22
81 9 0.08
83 18 0.15
ACGTcount: A:0.48, C:0.03, G:0.05, T:0.44
Consensus pattern (74 bp):
ATATATATTATATAATTTTGAAAACATTTTAAAAATATATATAATATAAAATTTTTAAAAAATTT
TAAAAACAC
Found at i:860406 original size:5 final size:5
Alignment explanation
Indices: 860387--860470 Score: 57
Period size: 5 Copynumber: 16.4 Consensus size: 5
860377 AAATATTCTT
* * ** *
860387 TTTTA GTTTA TTTTTA TTTTA ATTTA -TTTA CCTT- TTTTA TTTAA TTTTA
1 TTTTA TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
860436 -TTTA TTACTTA TTTTA TTTTTA TTTTCA TTTTA TT
1 TTTTA TT--TTA TTTTA -TTTTA TTTT-A TTTTA TT
860471 GCAGGGTCCA
Statistics
Matches: 63, Mismatches: 8, Indels: 16
0.72 0.09 0.18
Matches are distributed among these distances:
4 10 0.16
5 34 0.54
6 14 0.22
7 5 0.08
ACGTcount: A:0.21, C:0.05, G:0.01, T:0.73
Consensus pattern (5 bp):
TTTTA
Found at i:860448 original size:34 final size:34
Alignment explanation
Indices: 860384--860449 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
860374 GAAAAATATT
* *
860384 CTTTTTTAGTTTATTTTTATTTTAATTTATTTAC
1 CTTTTTTAGTTTAATTTTATTTTAACTTATTTAC
*
860418 CTTTTTTA-TTTAATTTTATTTATTACTTATTT
1 CTTTTTTAGTTTAATTTTATTT-TAACTTATTT
860450 TATTTTTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 12 0.43
34 16 0.57
ACGTcount: A:0.21, C:0.06, G:0.02, T:0.71
Consensus pattern (34 bp):
CTTTTTTAGTTTAATTTTATTTTAACTTATTTAC
Found at i:860451 original size:22 final size:21
Alignment explanation
Indices: 860387--860460 Score: 71
Period size: 22 Copynumber: 3.4 Consensus size: 21
860377 AAATATTCTT
860387 TTTTAGTTTATTTTTATTTTAA
1 TTTTA-TTTATTTTTATTTTAA
860409 -TTTATTTACCTTTTT-TATTTAA
1 TTTTATTTA--TTTTTAT-TTTAA
* *
860431 TTTTATTTATTACTTATTTTAT
1 TTTTATTTATT-TTTATTTTAA
860453 TTTTATTT
1 TTTTATTT
860461 TCATTTTATT
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
20 4 0.09
21 7 0.16
22 24 0.55
23 9 0.20
ACGTcount: A:0.22, C:0.04, G:0.01, T:0.73
Consensus pattern (21 bp):
TTTTATTTATTTTTATTTTAA
Found at i:860460 original size:27 final size:29
Alignment explanation
Indices: 860393--860466 Score: 93
Period size: 27 Copynumber: 2.7 Consensus size: 29
860383 TCTTTTTTAG
860393 TTTATTTTTATTTTAATTTATTTACCTTT
1 TTTATTTTTATTTTAATTTATTTACCTTT
*
860422 TTTA-TTTAATTTT-ATTTA-TTA-CTTAT
1 TTTATTTTTATTTTAATTTATTTACCTT-T
*
860448 TTTATTTTTATTTTCATTT
1 TTTATTTTTATTTTAATTT
860467 TATTGCAGGG
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
25 3 0.08
26 8 0.20
27 13 0.32
28 12 0.30
29 4 0.10
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.73
Consensus pattern (29 bp):
TTTATTTTTATTTTAATTTATTTACCTTT
Found at i:860470 original size:11 final size:11
Alignment explanation
Indices: 860386--860467 Score: 55
Period size: 11 Copynumber: 7.4 Consensus size: 11
860376 AAAATATTCT
*
860386 TTTTTAGTTTA
1 TTTTTATTTTA
860397 TTTTTATTTTA
1 TTTTTATTTTA
*
860408 -ATTTA-TTTA
1 TTTTTATTTTA
860417 CCTTTTT-TATTTA
1 --TTTTTAT-TTTA
*
860430 ATTTTA-TTTA
1 TTTTTATTTTA
*
860440 TTACTTATTTTA
1 TT-TTTATTTTA
860452 TTTTTATTTTCA
1 TTTTTATTTT-A
860464 TTTT
1 TTTT
860468 ATTGCAGGGT
Statistics
Matches: 55, Mismatches: 7, Indels: 17
0.70 0.09 0.22
Matches are distributed among these distances:
9 4 0.07
10 9 0.16
11 24 0.44
12 14 0.25
13 4 0.07
ACGTcount: A:0.21, C:0.05, G:0.01, T:0.73
Consensus pattern (11 bp):
TTTTTATTTTA
Found at i:861678 original size:21 final size:19
Alignment explanation
Indices: 861650--861712 Score: 58
Period size: 21 Copynumber: 3.2 Consensus size: 19
861640 CTTATTACTA
861650 TTTT-TTTATCTTATATTTT
1 TTTTGTTTAT-TTATATTTT
861669 TTTTGGTTTATTTAATACTTTT
1 TTTT-GTTTATTT-ATA-TTTT
* *
861691 TATTGTTT-TTTGTATTTT
1 TTTTGTTTATTTATATTTT
861709 TTTT
1 TTTT
861713 TATTTTTCCT
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
18 7 0.19
19 6 0.16
20 5 0.14
21 12 0.32
22 7 0.19
ACGTcount: A:0.14, C:0.03, G:0.06, T:0.76
Consensus pattern (19 bp):
TTTTGTTTATTTATATTTT
Found at i:861749 original size:4 final size:4
Alignment explanation
Indices: 861732--861812 Score: 62
Period size: 4 Copynumber: 20.5 Consensus size: 4
861722 TTTGATTTGT
* * * * *
861732 TTTA TTTG TTTA TTTA -TT- TTTA TTTTA TTTA TATA TATA TATA TATA
1 TTTA TTTA TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TTTA TTTA TTTA
861779 TTATA TTT- TTTGA TTTA TTTA -TTA TTTA TTTA TT
1 TT-TA TTTA TTT-A TTTA TTTA TTTA TTTA TTTA TT
861813 CTCTCTAACA
Statistics
Matches: 66, Mismatches: 4, Indels: 14
0.79 0.05 0.17
Matches are distributed among these distances:
3 10 0.15
4 45 0.68
5 11 0.17
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.70
Consensus pattern (4 bp):
TTTA
Found at i:865785 original size:77 final size:77
Alignment explanation
Indices: 865658--865811 Score: 254
Period size: 77 Copynumber: 2.0 Consensus size: 77
865648 CTAGCCTGAC
* * *
865658 AAAGGTAATTATACTTTACAATAAAGCTTGAGTTGTCCCTCTAGAGCAATTGGTTAAACTCCCCA
1 AAAGGTAATTATACTATACAATAAAGCTTGAGTTGTCCCTCTAAAGCAATTGGTTAAACACCCCA
865723 GCTCTATGGATT
66 GCTCTATGGATT
* *
865735 AAAGGTAATTATACTATACAATAAAGTTTGAGTTGTCCCTCTAAAGCAATTGGTTAAACACCCCG
1 AAAGGTAATTATACTATACAATAAAGCTTGAGTTGTCCCTCTAAAGCAATTGGTTAAACACCCCA
*
865800 GCTTTATGGATT
66 GCTCTATGGATT
865812 TAGCTAGCCA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
77 71 1.00
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Consensus pattern (77 bp):
AAAGGTAATTATACTATACAATAAAGCTTGAGTTGTCCCTCTAAAGCAATTGGTTAAACACCCCA
GCTCTATGGATT
Found at i:867156 original size:84 final size:83
Alignment explanation
Indices: 866962--867903 Score: 760
Period size: 84 Copynumber: 11.4 Consensus size: 83
866952 GTCTGTCAGT
* * * * * * * * * *
866962 AAAGACCTTCGAGTTCGACTACGCTCAGCTCTAAAGAACATCATATGCAGCATAGCTCAAGGCTA
1 AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTACAACATAACTTAAGTCGA
* * *
867027 GAAGGGCTATATGCCACC
66 GAAGGGTTATCTGCAACC
* *
867045 -AAGACCTTCGAGTTCGACTACGCTCAGCTCCATGGCATATCATTTACAACATAACTTAAGTCGA
1 AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTACAACATAACTTAAGTCGA
*
867109 GAAGGGTTATCTGCCAAGC
66 GAAGGGTTATCTG-CAACC
* * * * ** *
867128 AAAGACCTTTGAGCTCAACTACGCTCAGCTCCAAGGCACATCATTTGCAGTATAGCTTAAGTCGA
1 AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTACAACATAACTTAAGTCGA
867193 GAAGGGTTATCTG---CC
66 GAAGGGTTATCTGCAACC
* * * * * * * * * * *
867208 AAAGACCCTCGAGTTTGATTACACTCAACTTCGAGGGCACATTATTTATAGA-ATAACTCAAGGC
1 AAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTACA-ACATAACTTAAGTC
* * * **
867272 TATAAGGGTTATATGTGACC
64 GAGAAGGGTTATCTGCAACC
* * *
867292 AAAAGACCTTCGATTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAACATAACTTAAGTCG
1 -AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTACAACATAACTTAAGTCG
* *
867357 AGAAGGGCTATTTG---CC
65 AGAAGGGTTATCTGCAACC
* * * * * * * *
867373 AAAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAACATAACTCAAGGCT
1 AAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTACAACATAACTTAAGTCG
* * **
867438 AGAATGGTTATATGTGACC
65 AGAAGGGTTATCTGCAACC
* * * * **
867457 AAAAGACCTTCGAGTTCGACTACGTTCAGCTCTAAGGCATATCATTTGCAGTATAACTTAAGTCG
1 -AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTACAACATAACTTAAGTCG
867522 AGAAGGGTTATCTGTCAACC
65 AGAAGGGTTATCTG-CAACC
* * *
867542 AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTACAGCATAGCTTAAGTTGA
1 AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTACAACATAACTTAAGTCGA
*
867607 GAAGGGCTATCTG---CC
66 GAAGGGTTATCTGCAACC
* * * * **** * * * *
867622 AAAG-CCCTCGAGTTCGATTACACTCATCTTTGTGGGCACATCATTTACAATATAACTCAAGGCT
1 AAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTACAACATAACTTAAGTCG
*
867686 AGAAGGGTTATTTGTC-ACC
65 AGAAGGGTTATCTG-CAACC
* * * * * * * * *
867705 AAAGACCCTCGAGTTTGATTACACTCAGCTTCGAGGGCACATCATTTACAACATAACTCAAGGCT
1 AAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTACAACATAACTTAAGTCG
*
867770 AGAAGGGTTATATGTC-ACC
65 AGAAGGGTTATCTG-CAACC
* * * * ** * * *
867789 AAAGACCTTCGAGTTCGGCTACACTCAGCTCCAAGACACATTATTTGTAGCATAGCTTAAGTCAA
1 AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTACAACATAACTTAAGTCGA
*
867854 GAAGGGATATCTGCCAACC
66 GAAGGGTTATCTG-CAACC
* * *
867873 AATGACCTTCGAGTTCGATTACACTCAGCTC
1 AAAGACCTTCGAGTTCGACTACGCTCAGCTC
867904 AGAGGCAAAC
Statistics
Matches: 691, Mismatches: 147, Indels: 41
0.79 0.17 0.05
Matches are distributed among these distances:
79 20 0.03
80 89 0.13
81 77 0.11
82 63 0.09
83 47 0.07
84 344 0.50
85 51 0.07
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (83 bp):
AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTACAACATAACTTAAGTCGA
GAAGGGTTATCTGCAACC
Found at i:867319 original size:165 final size:164
Alignment explanation
Indices: 866962--867902 Score: 935
Period size: 165 Copynumber: 5.7 Consensus size: 164
866952 GTCTGTCAGT
* * * * * * * *
866962 AAAGACCTTCGAGTTCGACTACGCTCAGCTCTAAAGAACATCATATGCAGCATAGCTCAAGGCTA
1 AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGA
* * * * * * * *
867027 GAAGGGCTATATGCCACCAAGACCTTCGAGTTCGACTACGCTCAGC-TCCATGGCATATCATTTA
66 GAAGGGTTATCTGCCA--AAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTA
* * * * ** *
867091 CAACATAACTTAAGTCGAGAAGGGTTATCTGCCAAGC
129 CAACATAACTCAAGGCTAGAAGGGTTATATG-TGACC
* * * * *
867128 AAAGACCTTTGAGCTCAACTACGCTCAGCTCCAAGGCACATCATTTGCAGTATAGCTTAAGTCGA
1 AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGA
* * * *
867193 GAAGGGTTATCTGCCAAAGACCCTCGAGTTTGATTACACTCAACTTCGAGGGCACATTATTTATA
66 GAAGGGTTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACA
*
867258 GA-ATAACTCAAGGCTATAAGGGTTATATGTGACC
131 -ACATAACTCAAGGCTAGAAGGGTTATATGTGACC
* * *
867292 AAAAGACCTTCGATTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAACATAACTTAAGTCG
1 -AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCG
* *
867357 AGAAGGGCTATTTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTAC
65 AGAAGGGTTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTAC
*
867422 AACATAACTCAAGGCTAGAATGGTTATATGTGACC
130 AACATAACTCAAGGCTAGAAGGGTTATATGTGACC
* * * *
867457 AAAAGACCTTCGAGTTCGACTACGTTCAGCTCTAAGGCATATCATTTGCAGTATAACTTAAGTCG
1 -AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCG
* * * * *
867522 AGAAGGGTTATCTGTCAACCAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCAT
65 AGAAGGGTTATCTG----CCAAAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCAT
* * * * * *
867586 TTACAGCATAGCTTAA-GTTGAGAAGGG--CTATCTG-CC
126 TTACAACATAACTCAAGGCT-AGAAGGGTTATATGTGACC
* * * * **** * ** * * *
867622 AAAG-CCCTCGAGTTCGATTACACTCATCTTTGTGGGCACATCATTTACAATATAACTCAAGGCT
1 AAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTGCAGCATAACTTAAGTCG
* *
867686 AGAAGGGTTATTTGTCACCAAAGACCCTCGAGTTTGATTACACTCAGCTTCGAGGGCACATCATT
65 AGAAGGGTTATCTG---CCAAAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATT
*
867751 TACAACATAACTCAAGGCTAGAAGGGTTATATGTCACC
127 TACAACATAACTCAAGGCTAGAAGGGTTATATGTGACC
* * * * * * *
867789 AAAGACCTTCGAGTTCGGCTACACTCAGCTCCAAGACACATTATTTGTAGCATAGCTTAAGTCAA
1 AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGA
* *
867854 GAAGGGATATCTGCCAACCAATGACCTTCGAGTTCGATTACACTCAGCT
66 GAAGGGTTATCTGCC-A--AA-GACCCTCGAGTTCGATTACACTCAGCT
867903 CAGAGGCAAA
Statistics
Matches: 636, Mismatches: 119, Indels: 38
0.80 0.15 0.05
Matches are distributed among these distances:
163 47 0.07
164 103 0.16
165 260 0.41
166 78 0.12
167 43 0.07
168 77 0.12
169 28 0.04
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (164 bp):
AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGA
GAAGGGTTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACA
ACATAACTCAAGGCTAGAAGGGTTATATGTGACC
Found at i:867530 original size:249 final size:247
Alignment explanation
Indices: 866962--867902 Score: 1023
Period size: 249 Copynumber: 3.8 Consensus size: 247
866952 GTCTGTCAGT
* * * * * * * *
866962 AAAGACCTTCGAGTTCGACTACGCTCAGC-TCTAAAGAACATCATATGCAGCATAGCTCAAGGCT
1 AAAGACCCTCGAGTTCGACTACACTCAGCTTCGAAGGCACATCATTTACAGCATAACTCAAGGCT
* * * *
867026 AGAAGGGCTATATGCCACC-AAGACCTTCGAGTTCGACTACGCTCAGCTCCATGGCATATCATTT
66 AGAAGGGTTATATGTCACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
* * * * * * *
867090 ACAACATAACTTAAGTCGAGAAGGGTTATCTGCCAAGCAAAGACCTTTGAGCTCAACTACGCTCA
131 ACAACATAACTTAAGTCGAGAAGGGCTATCTG-C---CAAAGACCCTCGAGTTCGATTACACTCA
* * * * * * * * * *
867155 GC-TCCAAGGCACATCATTTGCAGTATAGCTTAAGTCGAGAAGGGT-TATCTG-CC
192 GCTTCGAGGGCACATCATTTACAATATAACTCAAGGCTAGAAGGTTATATGTGACC
* * * * * * *
867208 AAAGACCCTCGAGTTTGATTACACTCAACTTCGAGGGCACATTATTTATAGAATAACTCAAGGCT
1 AAAGACCCTCGAGTTCGACTACACTCAGCTTCGAAGGCACATCATTTACAGCATAACTCAAGGCT
* * * *
867273 ATAAGGGTTATATGTGACCAAAAGACCTTCGATTTCGACTACGCTCAGCTCCAAGGCATATCATT
66 AGAAGGGTTATATGTCACC-AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
* *
867338 TGCAACATAACTTAAGTCGAGAAGGGCTATTTGCCAAAGACCCTCGAGTTCGATTACACTCAGCT
130 TACAACATAACTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCT
*
867403 TCGAGGGCACATCATTTACAACATAACTCAAGGCTAGAATGGTTATATGTGACC
195 TCGAGGGCACATCATTTACAATATAACTCAAGGCTAGAA-GGTTATATGTGACC
* ** * * * * * *
867457 AAAAGACCTTCGAGTTCGACTACGTTCAGC-TCTAAGGCATATCATTTGCAGTATAACTTAAGTC
1 -AAAGACCCTCGAGTTCGACTACACTCAGCTTCGAAGGCACATCATTTACAGCATAACTCAAGGC
* *
867521 GAGAAGGGTTATCTGTCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCAT
65 TAGAAGGGTTATATGTC-ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCAT
* * * *
867586 TTACAGCATAGCTTAAGTTGAGAAGGGCTATCTGCCAAAG-CCCTCGAGTTCGATTACACTCATC
129 TTACAACATAACTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGC
* * * *
867650 TTTGTGGGCACATCATTTACAATATAACTCAAGGCTAGAAGGGTTATTTGTCACC
194 TTCGAGGGCACATCATTTACAATATAACTCAAGGCTAGAA-GGTTATATGTGACC
* * * *
867705 AAAGACCCTCGAGTTTGATTACACTCAGCTTCGAGGGCACATCATTTACAACATAACTCAAGGCT
1 AAAGACCCTCGAGTTCGACTACACTCAGCTTCGAAGGCACATCATTTACAGCATAACTCAAGGCT
* * * *
867770 AGAAGGGTTATATGTCACCAAAGACCTTCGAGTTCGGCTACACTCAGCTCCAAGACACATTATTT
66 AGAAGGGTTATATGTCACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
** * * * * *
867835 GTAGCATAGCTTAAGTCAAGAAGGGATATCTGCCAACCAATGACCTTCGAGTTCGATTACACTCA
131 ACAACATAACTTAAGTCGAGAAGGGCTATCTGCC-A--AA-GACCCTCGAGTTCGATTACACTCA
867900 GCT
192 GCT
867903 CAGAGGCAAA
Statistics
Matches: 580, Mismatches: 100, Indels: 24
0.82 0.14 0.03
Matches are distributed among these distances:
245 24 0.04
246 54 0.09
247 141 0.24
248 120 0.21
249 189 0.33
250 28 0.05
251 1 0.00
252 23 0.04
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (247 bp):
AAAGACCCTCGAGTTCGACTACACTCAGCTTCGAAGGCACATCATTTACAGCATAACTCAAGGCT
AGAAGGGTTATATGTCACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
ACAACATAACTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTT
CGAGGGCACATCATTTACAATATAACTCAAGGCTAGAAGGTTATATGTGACC
Found at i:868596 original size:36 final size:36
Alignment explanation
Indices: 868551--868699 Score: 165
Period size: 36 Copynumber: 4.1 Consensus size: 36
868541 TATAATATAT
* * *
868551 ATATGTATATATTATATAATTTTGAAAACATTTTGA
1 ATATATATATATTATATAGTTTTTAAAACATTTTGA
*
868587 ATATATATATGA-GATATAGTTTTTAAAACATTTTTGAAA
1 ATATATATAT-ATTATATAGTTTTTAAAACA-TTTTG--A
* *
868626 ACATATATATATTATATAGTTTTTAAAACATTCTGA
1 ATATATATATATTATATAGTTTTTAAAACATTTTGA
* * * *
868662 AAATATATATAATATATAGTTTTTAAAAAAATTTGA
1 ATATATATATATTATATAGTTTTTAAAACATTTTGA
868698 AT
1 AT
868700 TTGAAAGCAT
Statistics
Matches: 95, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
36 57 0.60
37 6 0.06
38 5 0.05
39 27 0.28
ACGTcount: A:0.45, C:0.03, G:0.07, T:0.44
Consensus pattern (36 bp):
ATATATATATATTATATAGTTTTTAAAACATTTTGA
Found at i:868654 original size:75 final size:78
Alignment explanation
Indices: 868556--868733 Score: 236
Period size: 75 Copynumber: 2.3 Consensus size: 78
868546 TATATATATG
* * * * * *
868556 TATATATTATATAATTTTGAAAACATTTTGAATATATATATGAGATATAGTTTTT-AAAACA-TT
1 TATATATTATATAGTTTTTAAAACATTCTGAAAATATATATAAGATATAGTTTTTAAAAAAATTT
868619 -TTTGAAAACATA
66 ATTTGAAAACATA
*
868631 TATATATTATATAGTTTTTAAAACATTCTGAAAATATATATAATATATAGTTTTTAAAAAAATTT
1 TATATATTATATAGTTTTTAAAACATTCTGAAAATATATATAAGATATAGTTTTTAAAAAAATTT
* *
868696 GAATTTGAAAGCATT
66 --ATTTGAAAACATA
868711 TATATATTATATAGTTTTTAAAA
1 TATATATTATATAGTTTTTAAAA
868734 ATAAATATAT
Statistics
Matches: 89, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
75 49 0.55
76 5 0.06
77 2 0.02
80 33 0.37
ACGTcount: A:0.44, C:0.03, G:0.07, T:0.45
Consensus pattern (78 bp):
TATATATTATATAGTTTTTAAAACATTCTGAAAATATATATAAGATATAGTTTTTAAAAAAATTT
ATTTGAAAACATA
Found at i:868774 original size:12 final size:12
Alignment explanation
Indices: 868753--868787 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
868743 TAATATATAA
868753 TTTT-AAAATAT
1 TTTTAAAAATAT
868764 TTTTAAAAATAT
1 TTTTAAAAATAT
868776 TTTTAAAAATAT
1 TTTTAAAAATAT
868788 ATATTATATG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 4 0.17
12 19 0.83
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (12 bp):
TTTTAAAAATAT
Found at i:870121 original size:15 final size:15
Alignment explanation
Indices: 870101--870168 Score: 52
Period size: 15 Copynumber: 4.7 Consensus size: 15
870091 CTTTGATTTG
870101 TTTATTTATTTTTAT
1 TTTATTTATTTTTAT
* *
870116 TTTATTTATATATAT
1 TTTATTTATTTTTAT
* *
870131 ATTATATA-TTTT-T
1 TTTATTTATTTTTAT
**
870144 TGGATTTATTTATTA-
1 TTTATTTATTT-TTAT
870159 TTTATTTATT
1 TTTATTTATT
870169 CTCTCTAACA
Statistics
Matches: 38, Mismatches: 12, Indels: 6
0.68 0.21 0.11
Matches are distributed among these distances:
13 5 0.13
14 4 0.11
15 29 0.76
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (15 bp):
TTTATTTATTTTTAT
Found at i:870163 original size:11 final size:11
Alignment explanation
Indices: 870101--870168 Score: 57
Period size: 11 Copynumber: 5.9 Consensus size: 11
870091 CTTTGATTTG
870101 TTTATTTATT-
1 TTTATTTATTA
870111 TTTATTTTATTTA
1 TTTA-TTTA-TTA
* *
870124 TATATATATTA
1 TTTATTTATTA
* *
870135 TATATTTTTTGGA
1 TTTATTTATT--A
870148 TTTATTTATTA
1 TTTATTTATTA
870159 TTTATTTATT
1 TTTATTTATT
870169 CTCTCTAACA
Statistics
Matches: 47, Mismatches: 6, Indels: 9
0.76 0.10 0.15
Matches are distributed among these distances:
10 4 0.09
11 26 0.55
12 5 0.11
13 12 0.26
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (11 bp):
TTTATTTATTA
Found at i:870965 original size:15 final size:15
Alignment explanation
Indices: 870936--870964 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
870926 TCTTTTTCTT
870936 CTTACAAAATCGGGG
1 CTTACAAAATCGGGG
870951 CTTACAAAA-CGGGG
1 CTTACAAAATCGGGG
870965 GGCGATTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.34, C:0.21, G:0.28, T:0.17
Consensus pattern (15 bp):
CTTACAAAATCGGGG
Found at i:876164 original size:52 final size:52
Alignment explanation
Indices: 876047--876279 Score: 150
Period size: 52 Copynumber: 4.3 Consensus size: 52
876037 TTCTTAGTTG
* * * *
876047 TCAAGGAACCCCTAAGAATTAGGCTTAGTTTCCTTTTAAAAACTCA-TTGAAAATCATCA
1 TCAAGAAACCCCTAA-AATCAGGCTTAGTTT-C--TTAAAATCTTATTTG-AAA--AT-A
876106 TCAAGAAACCCCTGAAAATCAGGCTTAGTTTC-TAAAATCTTATTTGAAAATA
1 TCAAGAAACCCCT-AAAATCAGGCTTAGTTTCTTAAAATCTTATTTGAAAATA
* * * * * * *
876158 TCAAGAAATCCCTAACATTTAGGCTTAATTTCTTTGAAAT-TCATTTAAAAATA
1 TCAAGAAACCCCTAA-AATCAGGCTTAGTTTC-TTAAAATCTTATTTGAAAATA
* * * * ** *
876211 TTAAGAAACCCCTAAAATTAGGTTTAGCTTCTTTCAA-CTTCATTTGAAAACA
1 TCAAGAAACCCCTAAAATCAGGCTTAGTTTCTTAAAATCTT-ATTTGAAAATA
* *
876263 ACTAGAAACCCCTAAAA
1 TCAAGAAACCCCTAAAA
876280 ACCAAGTTTA
Statistics
Matches: 142, Mismatches: 25, Indels: 21
0.76 0.13 0.11
Matches are distributed among these distances:
51 7 0.05
52 61 0.43
53 26 0.18
54 5 0.04
55 11 0.08
56 3 0.02
58 1 0.01
59 26 0.18
60 2 0.01
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (52 bp):
TCAAGAAACCCCTAAAATCAGGCTTAGTTTCTTAAAATCTTATTTGAAAATA
Found at i:876217 original size:53 final size:52
Alignment explanation
Indices: 876105--876279 Score: 156
Period size: 52 Copynumber: 3.3 Consensus size: 52
876095 GAAAATCATC
* * * * *
876105 ATCAAGAAACCCCTGAAAATCAGGCTT-AGTT-TCTAAAATCTTATTTGAAAAT
1 ATCAAGAAACCCCT-AAAATTAGGCTTAACTTCTTTCAAAT-TCATTTGAAAAT
* * * * *
876157 ATCAAGAAATCCCTAACATTTAGGCTTAATTTCTTTGAAATTCATTTAAAAAT
1 ATCAAGAAACCCCTAA-AATTAGGCTTAACTTCTTTCAAATTCATTTGAAAAT
* * * * *
876210 ATTAAGAAACCCCTAAAATTAGGTTTAGCTTCTTTCAACTTCATTTGAAAAC
1 ATCAAGAAACCCCTAAAATTAGGCTTAACTTCTTTCAAATTCATTTGAAAAT
* *
876262 AACTAGAAACCCCTAAAA
1 ATCAAGAAACCCCTAAAA
876280 ACCAAGTTTA
Statistics
Matches: 99, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
51 2 0.02
52 64 0.65
53 27 0.27
54 6 0.06
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (52 bp):
ATCAAGAAACCCCTAAAATTAGGCTTAACTTCTTTCAAATTCATTTGAAAAT
Found at i:876468 original size:74 final size:75
Alignment explanation
Indices: 876366--876544 Score: 213
Period size: 74 Copynumber: 2.4 Consensus size: 75
876356 AGGGAAACTA
* * * *
876366 TCTCAAGCGAGATAAATTTTGGTTTTAAGAAAAAAATAT-T-TGAGTGAAATGAATAT-TCTTGT
1 TCTCAAGCGAGACAAAATAT-GTTTTAAGAAAAAAA-ATCTGTGA-TGAAACGAA-ATGTCTTGT
*
876428 TTTGAG-TAAAATG
62 TGTGAGATAAAATG
* *
876441 TCTTAAGCGAGACAAAATATGTTTTAAGAAAAAAAATCTGTTATGAAACGAAATGTCTTGTTGTG
1 TCTCAAGCGAGACAAAATATGTTTTAAGAAAAAAAATCTGTGATGAAACGAAATGTCTTGTTGTG
876506 AGAATAAAATG
66 AG-ATAAAATG
*
876517 TCTCAAGCGAGACAAAGTATGTTTTAAG
1 TCTCAAGCGAGACAAAATATGTTTTAAG
876545 GGAAACTATC
Statistics
Matches: 90, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
73 4 0.04
74 35 0.39
75 18 0.20
76 33 0.37
ACGTcount: A:0.40, C:0.08, G:0.19, T:0.33
Consensus pattern (75 bp):
TCTCAAGCGAGACAAAATATGTTTTAAGAAAAAAAATCTGTGATGAAACGAAATGTCTTGTTGTG
AGATAAAATG
Found at i:876629 original size:36 final size:36
Alignment explanation
Indices: 876517--876611 Score: 136
Period size: 36 Copynumber: 2.6 Consensus size: 36
876507 GAATAAAATG
* * * *
876517 TCTCAAGCGAGACAAAGTATGTTTTAAGGGAAACTA
1 TCTCAAGGGAGACAAAATATGTTTCAAGAGAAACTA
*
876553 TCTCAAGGGAGACAAAATATGTTTCAAGAGAAACTG
1 TCTCAAGGGAGACAAAATATGTTTCAAGAGAAACTA
*
876589 TCTCAAGGGAGACAAAATTTGTT
1 TCTCAAGGGAGACAAAATATGTT
876612 CTTTGCAAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 53 1.00
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.25
Consensus pattern (36 bp):
TCTCAAGGGAGACAAAATATGTTTCAAGAGAAACTA
Found at i:876717 original size:37 final size:37
Alignment explanation
Indices: 876676--876783 Score: 119
Period size: 37 Copynumber: 2.9 Consensus size: 37
876666 TCGGAGAATG
* ** *
876676 TCTCAAGCGAGACGATGCTTGTTTTGAGAGAAAAATA
1 TCTCAAGCGAGACAAAACTTGTTTTAAGAGAAAAATA
* * * *
876713 TCTCAAGTGAAACAAAATTTGTTTTAAGAGAAAAATG
1 TCTCAAGCGAGACAAAACTTGTTTTAAGAGAAAAATA
* *
876750 TCTCAAGCGAGACAAAATTTGTTTTTA-AGAAAAA
1 TCTCAAGCGAGACAAAACTTGTTTTAAGAGAAAAA
876784 CAACTTTGAA
Statistics
Matches: 60, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
36 7 0.12
37 53 0.88
ACGTcount: A:0.42, C:0.11, G:0.19, T:0.29
Consensus pattern (37 bp):
TCTCAAGCGAGACAAAACTTGTTTTAAGAGAAAAATA
Found at i:876884 original size:38 final size:37
Alignment explanation
Indices: 876798--876886 Score: 108
Period size: 37 Copynumber: 2.4 Consensus size: 37
876788 TTTGAAATTA
* *
876798 TTGTTCCGA-AGAAAAATGTCTTAAGTGAAACAAAAT
1 TTGTTTCGAGAGAAAAATGTCTCAAGTGAAACAAAAT
** * *
876834 TTGTTTTAAGAGAAAAATGTCTCAAGTGAAACGACATT
1 TTGTTTCGAGAGAAAAATGTCTCAAGTGAAAC-AAAAT
876872 TTGTTTCGAGAGAAA
1 TTGTTTCGAGAGAAA
876887 CAACACCCAA
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
36 6 0.14
37 21 0.49
38 16 0.37
ACGTcount: A:0.40, C:0.10, G:0.19, T:0.30
Consensus pattern (37 bp):
TTGTTTCGAGAGAAAAATGTCTCAAGTGAAACAAAAT
Found at i:880487 original size:21 final size:21
Alignment explanation
Indices: 880463--880508 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
880453 CTCTCCATGA
*
880463 ATCAAGAGATTCATCATTTGC
1 ATCAAGACATTCATCATTTGC
880484 ATCAAGACATTCATCATTTGC
1 ATCAAGACATTCATCATTTGC
880505 ATCA
1 ATCA
880509 TTTTAAACAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.35, C:0.22, G:0.11, T:0.33
Consensus pattern (21 bp):
ATCAAGACATTCATCATTTGC
Found at i:882275 original size:10 final size:11
Alignment explanation
Indices: 882262--882293 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
882252 ATACAAGGAT
882262 ATAAAATAA-A
1 ATAAAATAATA
882272 ATAAAATAATA
1 ATAAAATAATA
882283 A-AAAATAATA
1 ATAAAATAATA
882293 A
1 A
882294 AAGAATTGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 19 0.90
11 2 0.10
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (11 bp):
ATAAAATAATA
Found at i:886251 original size:36 final size:36
Alignment explanation
Indices: 886210--886482 Score: 429
Period size: 36 Copynumber: 7.6 Consensus size: 36
886200 GACACATCCT
* *
886210 TCCGTTCGACTTGAATCGGAAGTGTCGATGCTTCCT
1 TCCGTTCGACTTGAATCGGAAGTGCCGATGCTTCCC
* * **
886246 TCCGTTCGAATTGAATCGGAAGTGTCGATGCTTCAT
1 TCCGTTCGACTTGAATCGGAAGTGCCGATGCTTCCC
*
886282 TCCGTTCGACTTGAATCGGAAGTGCCGATGCTTCCT
1 TCCGTTCGACTTGAATCGGAAGTGCCGATGCTTCCC
886318 TCCGTTCGACTTGAATCGGAAGTGCCGATGCTTCCC
1 TCCGTTCGACTTGAATCGGAAGTGCCGATGCTTCCC
*
886354 TCCGTTCGACTTGAATCGAAAGTGCCGATGCTTCCC
1 TCCGTTCGACTTGAATCGGAAGTGCCGATGCTTCCC
* * *
886390 TCCGTTCTACTTGAAACGAAAGTGCCGATGCTTCCC
1 TCCGTTCGACTTGAATCGGAAGTGCCGATGCTTCCC
*
886426 TCCGTTCGACTTGAATCGGAAGTGCAGATGCTTCCC
1 TCCGTTCGACTTGAATCGGAAGTGCCGATGCTTCCC
*
886462 TCCATTCGACTTGAATCGGAA
1 TCCGTTCGACTTGAATCGGAA
886483 CAAAATTTTG
Statistics
Matches: 223, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 223 1.00
ACGTcount: A:0.20, C:0.27, G:0.23, T:0.30
Consensus pattern (36 bp):
TCCGTTCGACTTGAATCGGAAGTGCCGATGCTTCCC
Found at i:899494 original size:29 final size:29
Alignment explanation
Indices: 899461--899519 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
899451 ATTTTCACCT
899461 AACTAAATTGATGTAAACAATGACATCAA
1 AACTAAATTGATGTAAACAATGACATCAA
*
899490 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAACAATGACATCAA
899519 A
1 A
899520 TTAATTTAGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.51, C:0.14, G:0.12, T:0.24
Consensus pattern (29 bp):
AACTAAATTGATGTAAACAATGACATCAA
Found at i:903989 original size:35 final size:36
Alignment explanation
Indices: 903941--904014 Score: 123
Period size: 35 Copynumber: 2.1 Consensus size: 36
903931 CTCAAATATT
*
903941 CCAAAGTAATTAATTGGAGAGGAATCCAATTTAATG
1 CCAAAGTAATTAATTAGAGAGGAATCCAATTTAATG
*
903977 CCAAA-TAGTTAATTAGAGAGGAATCCAATTTAATG
1 CCAAAGTAATTAATTAGAGAGGAATCCAATTTAATG
904012 CCA
1 CCA
904015 GCCAGTACAA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
35 31 0.86
36 5 0.14
ACGTcount: A:0.42, C:0.14, G:0.18, T:0.27
Consensus pattern (36 bp):
CCAAAGTAATTAATTAGAGAGGAATCCAATTTAATG
Found at i:910114 original size:21 final size:22
Alignment explanation
Indices: 910085--910163 Score: 83
Period size: 21 Copynumber: 3.7 Consensus size: 22
910075 GAACCCCAGT
* *
910085 GGGGTATCGATTCCCCT-ATGG
1 GGGGAATCGATTCCCCTCAAGG
* *
910106 GGGGAATCGGTTCCCCTTCAAAG
1 GGGGAATCGATTCCCC-TCAAGG
*
910129 GGGGAATCGGTT-CCCTCAAGG
1 GGGGAATCGATTCCCCTCAAGG
910150 GGGG-ATCGATTCCC
1 GGGGAATCGATTCCC
910164 TCTGCACCAA
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
20 6 0.12
21 25 0.51
22 4 0.08
23 14 0.29
ACGTcount: A:0.18, C:0.25, G:0.34, T:0.23
Consensus pattern (22 bp):
GGGGAATCGATTCCCCTCAAGG
Done.