genome.fa.s7866.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007866.1 Hibiscus syriacus cultivar Beakdansim tig00110238_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49304

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
554--679	30	4.2	29	82	7	146	23	21	19	35	1.96
554--691	58	2.3	60	87	9	203	22	21	21	35	1.96
552--702	31	5.0	31	81	8	179	21	20	21	35	1.96
3488--3532	21	2.1	21	87	0	63	31	28	24	15	1.96
4350--4505	31	5.0	31	88	1	224	21	20	21	36	1.95
4352--4505	62	2.5	62	91	4	249	21	20	21	36	1.95
11347--11393	21	2.3	20	92	7	78	14	21	29	34	1.93
11348--11393	10	4.6	10	89	10	76	13	21	30	34	1.91
11406--11436	13	2.4	13	94	0	53	16	48	19	16	1.81
18565--18603	11	3.8	11	83	16	57	15	17	28	38	1.91
18620--18667	21	2.5	18	90	10	69	14	45	16	22	1.84
18630--18660	13	2.4	13	100	0	62	16	48	16	19	1.81
18679--18754	29	2.6	29	87	0	98	21	9	27	42	1.83
22594--22714	42	2.9	42	83	0	161	26	19	19	34	1.96
22733--22840	37	2.9	37	85	0	153	42	19	18	19	1.89
22843--23260	55	7.6	55	86	1	480	29	16	23	29	1.97
27010--27039	7	4.3	7	91	0	51	83	0	3	13	0.77
28694--28756	27	2.7	21	71	28	56	38	20	15	25	1.92
28700--28753	27	2.0	27	100	0	108	37	22	18	22	1.95
31188--31229	21	2.0	21	95	0	75	7	11	14	66	1.43
32308--32768	134	3.5	134	86	3	628	31	19	19	29	1.97
33306--33644	45	7.6	45	80	4	276	43	18	16	21	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33576--34521	38	23.9	38	75	9	759	37	17	19	25	1.93
33576--34556	118	8.2	118	77	8	817	37	17	19	25	1.93
33571--34556	80	12.4	78	79	6	757	37	16	19	25	1.93
36361--36451	18	5.1	18	83	12	66	5	16	0	78	0.94
36361--36411	9	5.9	9	80	15	63	9	11	0	78	0.97
36377--36510	9	14.2	9	74	11	81	5	17	0	76	1.00
36393--36479	12	7.2	12	74	18	65	3	19	1	75	1.00
36400--36508	18	5.4	21	80	14	90	3	19	0	76	0.99
36480--36535	29	1.9	29	85	0	76	5	21	0	73	1.03
42848--42907	21	3.0	21	73	14	72	5	16	15	63	1.47
42847--42907	18	3.2	18	76	13	68	4	16	16	62	1.49
42678--43105	233	1.8	233	91	2	716	16	26	18	38	1.92

Tables:   1

The End!