Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007867.1 Hibiscus syriacus cultivar Beakdansim tig00110239_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3477501
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 12 of 18
Found at i:2121981 original size:46 final size:46
Alignment explanation
Indices: 2121931--2122128 Score: 270
Period size: 46 Copynumber: 4.3 Consensus size: 46
2121921 CAAAACGAAT
* **
2121931 CCATAAATGAAATGAATGAAAGGATGCATTAAGGCATGAAATAATG
1 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
* * ** * *
2121977 CCATAAATAAAATGCGTGAAATAATGCATTAAGGCATCAAAGGATT
1 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
*
2122023 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATT
1 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
** * *
2122069 CCATATTTGAAATGCATGAAAGGATGCATTAAGACATAAAAGGATG
1 CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
2122115 CCATAAATGAAATG
1 CCATAAATGAAATG
2122129 TATACTGGTA
Statistics
Matches: 131, Mismatches: 21, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 131 1.00
ACGTcount: A:0.45, C:0.11, G:0.21, T:0.23
Consensus pattern (46 bp):
CCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
Found at i:2122061 original size:20 final size:20
Alignment explanation
Indices: 2122036--2122115 Score: 70
Period size: 20 Copynumber: 3.7 Consensus size: 20
2122026 TAAATGAAAT
2122036 GCATGAAAGGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
* *
2122056 GCATGAAAGGATTCCATATTTGAAAT
1 GCATGAAAGGA-TGC--A-TT--AAG
2122082 GCATGAAAGGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
* *
2122102 ACATAAAAGGATGC
1 GCATGAAAGGATGC
2122116 CATAAATGAA
Statistics
Matches: 48, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
20 25 0.52
21 2 0.04
22 2 0.04
23 2 0.04
24 2 0.04
25 2 0.04
26 13 0.27
ACGTcount: A:0.41, C:0.11, G:0.25, T:0.23
Consensus pattern (20 bp):
GCATGAAAGGATGCATTAAG
Found at i:2122087 original size:26 final size:25
Alignment explanation
Indices: 2122010--2122093 Score: 79
Period size: 26 Copynumber: 3.5 Consensus size: 25
2122000 ATGCATTAAG
* *
2122010 GCATCAAAGGATTCCATAAATGAAAT
1 GCATGAAAGGATTCCAT-ATTGAAAT
* *
2122036 GCATGAAAGGA-TGC--ATT--AAG
1 GCATGAAAGGATTCCATATTGAAAT
2122056 GCATGAAAGGATTCCATATTTGAAAT
1 GCATGAAAGGATTCCATA-TTGAAAT
2122082 GCATGAAAGGAT
1 GCATGAAAGGAT
2122094 GCATTAAGAC
Statistics
Matches: 46, Mismatches: 6, Indels: 12
0.72 0.09 0.19
Matches are distributed among these distances:
20 13 0.28
21 2 0.04
22 2 0.04
23 1 0.02
24 2 0.04
25 2 0.04
26 24 0.52
ACGTcount: A:0.42, C:0.12, G:0.23, T:0.24
Consensus pattern (25 bp):
GCATGAAAGGATTCCATATTGAAAT
Found at i:2123171 original size:28 final size:28
Alignment explanation
Indices: 2123140--2123227 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
2123130 TTAAAAAAGA
2123140 AAGGCGGCTAGCGGCTGTCAAAATAATC
1 AAGGCGGCTAGCGGCTGTCAAAATAATC
* ** * **
2123168 AAGGCTTGCTTCCAAGCT-T-AAAA-AAGA
1 AAGGC-GGCTAGC-GGCTGTCAAAATAATC
2123195 AAGGCGGCTAGCGGCTGTCAAAATAATC
1 AAGGCGGCTAGCGGCTGTCAAAATAATC
2123223 AAGGC
1 AAGGC
2123228 TTGCTTGCAC
Statistics
Matches: 43, Mismatches: 12, Indels: 10
0.66 0.18 0.15
Matches are distributed among these distances:
25 3 0.07
26 5 0.12
27 11 0.26
28 16 0.37
29 5 0.12
30 3 0.07
ACGTcount: A:0.35, C:0.20, G:0.26, T:0.18
Consensus pattern (28 bp):
AAGGCGGCTAGCGGCTGTCAAAATAATC
Found at i:2123208 original size:55 final size:55
Alignment explanation
Indices: 2123124--2123233 Score: 220
Period size: 55 Copynumber: 2.0 Consensus size: 55
2123114 TATTAATTTC
2123124 CCAAGCTTAAAAAAGAAAGGCGGCTAGCGGCTGTCAAAATAATCAAGGCTTGCTT
1 CCAAGCTTAAAAAAGAAAGGCGGCTAGCGGCTGTCAAAATAATCAAGGCTTGCTT
2123179 CCAAGCTTAAAAAAGAAAGGCGGCTAGCGGCTGTCAAAATAATCAAGGCTTGCTT
1 CCAAGCTTAAAAAAGAAAGGCGGCTAGCGGCTGTCAAAATAATCAAGGCTTGCTT
2123234 GCACGTGAAG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.20
Consensus pattern (55 bp):
CCAAGCTTAAAAAAGAAAGGCGGCTAGCGGCTGTCAAAATAATCAAGGCTTGCTT
Found at i:2134689 original size:146 final size:146
Alignment explanation
Indices: 2134425--2134814 Score: 518
Period size: 146 Copynumber: 2.7 Consensus size: 146
2134415 TATTTTCTGT
* * * * * * * *
2134425 AAGTATGGATACTTGTTGTGCCGATATCGATACTTTTATTCAAGTATGCTTGTCAAATAATTTGC
1 AAGTATCGATACTTCTTATGCCGATATGGATATTTTTATTCCAGTATACTTGTCAAACAATTTGC
** **
2134490 ATGCCAAATGTATCGATACACATTATAAAAGTATTGATATTTATAATTTCGAAAAAATGTATGCA
66 ACACCAAATGTATCGATACACATTATAAAAGTATCAATATTTATAATTTCGAAAAAATGTATGCA
*
2134555 -AGATATGAAAATGTCC
131 GAG-TATGAAAATGTCA
* *
2134571 AAGTATCGATACTTCTTATGTCGATATGGATATTTTTATTCCAGTATACTTGTCACACAATTTGC
1 AAGTATCGATACTTCTTATGCCGATATGGATATTTTTATTCCAGTATACTTGTCAAACAATTTGC
* * * *
2134636 ACACCAAATGTATTGATACACATTATTATAGTATCAATATTTATAATTTCGAAACAATGTATGCA
66 ACACCAAATGTATCGATACACATTATAAAAGTATCAATATTTATAATTTCGAAAAAATGTATGCA
*
2134701 GAGTATGAAAATTTCA
131 GAGTATGAAAATGTCA
** *
2134717 AAGTATCGATACTTCTTACACCGATATGGATATTTTTATTCCAGTATGA-TTCTCAAACAATTTG
1 AAGTATCGATACTTCTTATGCCGATATGGATATTTTTATTCCAGTAT-ACTTGTCAAACAATTTG
*
2134781 CACACAAAATGTATCGATACACA-TAT-AAAGTATC
65 CACACCAAATGTATCGATACACATTATAAAAGTATC
2134815 GATACTTGGA
Statistics
Matches: 214, Mismatches: 28, Indels: 6
0.86 0.11 0.02
Matches are distributed among these distances:
144 7 0.03
145 3 0.01
146 201 0.94
147 3 0.01
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (146 bp):
AAGTATCGATACTTCTTATGCCGATATGGATATTTTTATTCCAGTATACTTGTCAAACAATTTGC
ACACCAAATGTATCGATACACATTATAAAAGTATCAATATTTATAATTTCGAAAAAATGTATGCA
GAGTATGAAAATGTCA
Found at i:2135118 original size:196 final size:199
Alignment explanation
Indices: 2134717--2135473 Score: 1001
Period size: 199 Copynumber: 3.8 Consensus size: 199
2134707 GAAAATTTCA
* ** * * *
2134717 AAGTATCGATACTTCTTACACCGATATGGATATTTTTATTCCAGTATGATTCTCAAACAATTTGC
1 AAGTATCGATACTT-TTATATAGTTATCGATACTTTTATTCCAGTATGATTCTCAAACAATTTGC
* *
2134782 ACACAAAATGTATCGATACAC--ATATAAAGTATCGATACTTGGAATTT-TGGAACCTATTACTT
65 ACGCAAAATGTATCGATACACATATATAAAGTATCGATACTTGGAATTTCT-AAACCTATTACTT
* *
2134844 TAAAGTAATAGGTAAATTAACAATGTAAAC-GAAAAAAGTCTACCGGTATAATGATAATAGGCAT
129 TAAAGTAATAGGTAAATTAACAATGTAAACAGTAAAAA-TCTACCAGTATAATGATAATAGGCAT
2134908 AAATACC
193 AAATACC
* * *
2134915 AAGTATCGATACTCTTTATATAGTTAT-GATATTTTTATTCTAGTATGATTCTCAAACAATTTGG
1 AAGTATCGATACT-TTTATATAGTTATCGATACTTTTATTCCAGTATGATTCTCAAACAATTTGC
* ** *
2134979 ATGCAAAATGTATCG-T-TTCATGTATAAAGTATCGATACTTGGAATTT-TAAACCTATTACTTT
65 ACGCAAAATGTATCGATACACATATATAAAGTATCGATACTTGGAATTTCTAAACCTATTACTTT
* * * *
2135041 AAAGTAAAAGGTAAATTAACAATGTAAACAGTAAAAATATACTAGTATAATGAAAATAGGCATAA
130 AAAGTAATAGGTAAATTAACAATGTAAACAGTAAAAATCTACCAGTATAATGATAATAGGCATAA
*
2135106 ATACA
195 ATACC
* * * * * *
2135111 AAGTATCGATACTTTTATATAGGTATCAATACTTTTCTTCTAGTATGCTTCTCAATCAATTTGCA
1 AAGTATCGATACTTTTATATAGTTATCGATACTTTTATTCCAGTATGATTCTCAAACAATTTGCA
* * * *
2135176 TGCAAAATGTATTGATACACATATATAAAGTAAT-GATACTTGAAATTTCGAAACCTATTACTTT
66 CGCAAAATGTATCGATACACATATATAAAGT-ATCGATACTTGGAATTTCTAAACCTATTACTTT
* * *
2135240 AAAGTAATAGGTAAATTAACAATGTAAACGGTAAAAGTCTACCAGTATAATGATAATAGGCGTAA
130 AAAGTAATAGGTAAATTAACAATGTAAACAGTAAAAATCTACCAGTATAATGATAATAGGCATAA
2135305 ATACC
195 ATACC
* * *
2135310 AAGTATTGATACTTTTATATAGTTATGGATACTTTTATTCCAGTATGCTTCTCAAACAATTTGCA
1 AAGTATCGATACTTTTATATAGTTATCGATACTTTTATTCCAGTATGATTCTCAAACAATTTGCA
* * * **
2135375 CGCAAAGTATATCGATACACATATAGAAAGTATCGATACTTATAATTTCTAAACCTATTACTTTA
66 CGCAAAATGTATCGATACACATATATAAAGTATCGATACTTGGAATTTCTAAACCTATTACTTTA
* *
2135440 AAGTAATAGGTAAATTAACAAAGTACACAGTAAA
131 AAGTAATAGGTAAATTAACAATGTAAACAGTAAA
2135474 CGCTTCTACT
Statistics
Matches: 491, Mismatches: 58, Indels: 19
0.86 0.10 0.03
Matches are distributed among these distances:
195 13 0.03
196 128 0.26
197 81 0.16
198 47 0.10
199 222 0.45
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.34
Consensus pattern (199 bp):
AAGTATCGATACTTTTATATAGTTATCGATACTTTTATTCCAGTATGATTCTCAAACAATTTGCA
CGCAAAATGTATCGATACACATATATAAAGTATCGATACTTGGAATTTCTAAACCTATTACTTTA
AAGTAATAGGTAAATTAACAATGTAAACAGTAAAAATCTACCAGTATAATGATAATAGGCATAAA
TACC
Found at i:2135556 original size:15 final size:15
Alignment explanation
Indices: 2135536--2135566 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
2135526 ATATATAAAG
2135536 TATCGATAATTATAA
1 TATCGATAATTATAA
2135551 TATCGATAATTATAA
1 TATCGATAATTATAA
2135566 T
1 T
2135567 TTTGAAACCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.42
Consensus pattern (15 bp):
TATCGATAATTATAA
Found at i:2137569 original size:14 final size:15
Alignment explanation
Indices: 2137550--2137578 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
2137540 TCAAGCATTT
2137550 AACAATCCA-AAACA
1 AACAATCCAGAAACA
2137564 AACAATCCAGAAACA
1 AACAATCCAGAAACA
2137579 TAAAAAACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.62, C:0.28, G:0.03, T:0.07
Consensus pattern (15 bp):
AACAATCCAGAAACA
Found at i:2139584 original size:20 final size:21
Alignment explanation
Indices: 2139493--2139587 Score: 77
Period size: 21 Copynumber: 4.4 Consensus size: 21
2139483 GGCCTTGTGC
*
2139493 ATCGATGCACATTCAAGACGTGC
1 ATCGATGCACATTCAAG--GTGT
* * * *
2139516 ATCGGTGCACCTACATGGTGT
1 ATCGATGCACATTCAAGGTGT
*
2139537 ATCGATGCACATTCAAGGATGC
1 ATCGATGCACATTCAAGG-TGT
*
2139559 ATCGATGCAC-TGT-TAGGTGT
1 ATCGATGCACAT-TCAAGGTGT
2139579 ATCGATGCA
1 ATCGATGCA
2139588 TGAAGCACAA
Statistics
Matches: 58, Mismatches: 12, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
20 11 0.19
21 21 0.36
22 13 0.22
23 13 0.22
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.26
Consensus pattern (21 bp):
ATCGATGCACATTCAAGGTGT
Found at i:2145371 original size:64 final size:65
Alignment explanation
Indices: 2145258--2145400 Score: 193
Period size: 64 Copynumber: 2.2 Consensus size: 65
2145248 TGCACTAAGA
*
2145258 GTGCATCGATGCATAAAATGCATTCAATGTTTCAAAATAGCCAGAGTGCATCGATGCATGG-TTT
1 GTGCATCGATGCATAAAATGCATTCAATGTTTCAAAATAGCCAGAGTGCATCGATGCATGGATTG
* ** *
2145322 GTGCATCGATGCATAAAATGCATTCGATG-TTCAATTTAATCCATG-GTGCATCGATGCATGGAT
1 GTGCATCGATGCATAAAATGCATTCAATGTTTCAAAAT-AGCCA-GAGTGCATCGATGCATGGAT
2145385 TG
64 TG
*
2145387 GTGCATCGGTGCAT
1 GTGCATCGATGCAT
2145401 CACTTTGAAA
Statistics
Matches: 70, Mismatches: 6, Indels: 5
0.86 0.07 0.06
Matches are distributed among these distances:
63 6 0.09
64 48 0.69
65 16 0.23
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (65 bp):
GTGCATCGATGCATAAAATGCATTCAATGTTTCAAAATAGCCAGAGTGCATCGATGCATGGATTG
Found at i:2146656 original size:21 final size:19
Alignment explanation
Indices: 2146630--2146677 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 19
2146620 GTCCGCGTTC
2146630 TTTTATATAATATACACTATA
1 TTTTATATAATATACA-T-TA
* *
2146651 TTTTATATATTATATATTA
1 TTTTATATAATATACATTA
2146670 TTTTATAT
1 TTTTATAT
2146678 TGTATATTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 10 0.40
20 1 0.04
21 14 0.56
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (19 bp):
TTTTATATAATATACATTA
Found at i:2146666 original size:2 final size:2
Alignment explanation
Indices: 2146633--2146856 Score: 102
Period size: 2 Copynumber: 117.5 Consensus size: 2
2146623 CGCGTTCTTT
* *
2146633 TA TA TA -A TA TA CA CTA TA T- TT TA TA TA T- TA TA TA T- TA T-
1 TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
2146671 TT TA TA T- TG TA TA T- TA TA GTA GTA TA TA GTA TA TGA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA -TA -TA TA TA -TA TA T-A TA TA TA
*
2146713 T- TA TA TA GTC T- TA TA TA T- TA TA T- TA TA GTA TA TA TA TA TA
1 TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA
2146753 TA GTA TA TA GTA TA TA GTA TA TA GTA T- TA TA T- TA TA TA TA TA
1 TA -TA TA TA -TA TA TA -TA TA TA -TA TA TA TA TA TA TA TA TA TA
2146795 TA -A TA T- TA TA GT- TA T- TA TA GT- TA TA T- TA TA TA TA T- TA
1 TA TA TA TA TA TA -TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA
2146832 GTA T- TA TA T- TA T- TA -A TA TA T- TA TA T
1 -TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
2146857 TATTATTACT
Statistics
Matches: 178, Mismatches: 6, Indels: 76
0.68 0.02 0.29
Matches are distributed among these distances:
1 25 0.14
2 128 0.72
3 25 0.14
ACGTcount: A:0.41, C:0.01, G:0.06, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2146688 original size:5 final size:5
Alignment explanation
Indices: 2146663--2146877 Score: 124
Period size: 5 Copynumber: 41.6 Consensus size: 5
2146653 TTATATATTA
* * * *
2146663 TATAT TATTT TATATT GTATAT TATAG TAGTA- TATAG TATAT GATA-
1 TATAT TATAT TATA-T -TATAT TATAT TA-TAT TATAT TATAT TATAT
* * *
2146709 TATAT TATA- TAGTCTT ATATAT TATAT TATAG TATA- TATAT ATATAG
1 TATAT TATAT TA-T-AT -TATAT TATAT TATAT TATAT TATAT -TATAT
* *
2146756 TATA- TAGTA- TATAG TATA- TAGTAT TATAT TATAT ATATAT AATAT
1 TATAT TA-TAT TATAT TATAT TA-TAT TATAT TATAT -TATAT TATAT
* *
2146801 TATAG T-TAT TATAGT TATAT TATA- TATAT TAGTAT TATAT TATTAA
1 TATAT TATAT TATA-T TATAT TATAT TATAT TA-TAT TATAT TA-TAT
2146847 TATAT TATAT TATTAT TACTTAT TATAT TAT
1 TATAT TATAT TA-TAT TA--TAT TATAT TAT
2146878 TTTCATTTAT
Statistics
Matches: 171, Mismatches: 16, Indels: 46
0.73 0.07 0.20
Matches are distributed among these distances:
4 24 0.14
5 99 0.58
6 35 0.20
7 11 0.06
8 2 0.01
ACGTcount: A:0.40, C:0.01, G:0.07, T:0.53
Consensus pattern (5 bp):
TATAT
Found at i:2146700 original size:7 final size:7
Alignment explanation
Indices: 2146680--2146835 Score: 112
Period size: 7 Copynumber: 22.1 Consensus size: 7
2146670 TTTTATATTG
*
2146680 TATATTA
1 TATAGTA
2146687 TAGTAGTA
1 TA-TAGTA
2146695 TATAGTA
1 TATAGTA
2146702 TAT-GATA
1 TATAG-TA
*
2146709 TATATTA
1 TATAGTA
*
2146716 TATAGTC
1 TATAGTA
2146723 T-TA-TA
1 TATAGTA
2146728 TATTA-TA
1 TA-TAGTA
2146735 TTATAGTA
1 -TATAGTA
*
2146743 TATATATA
1 TATA-GTA
2146751 TATAGTA
1 TATAGTA
2146758 TATAGTA
1 TATAGTA
2146765 TATAGTA
1 TATAGTA
2146772 TATAGTA
1 TATAGTA
*
2146779 TTATATTA
1 -TATAGTA
2146787 TATA-TA
1 TATAGTA
*
2146793 TATAATA
1 TATAGTA
2146800 TTATAGTTA
1 -TATAG-TA
2146809 TTATAGT-
1 -TATAGTA
*
2146816 TATATTA
1 TATAGTA
2146823 TATA-TA
1 TATAGTA
2146829 T-TAGTA
1 TATAGTA
2146835 T
1 T
2146836 TATATTATTA
Statistics
Matches: 125, Mismatches: 10, Indels: 29
0.76 0.06 0.18
Matches are distributed among these distances:
5 4 0.03
6 20 0.16
7 66 0.53
8 27 0.22
9 8 0.06
ACGTcount: A:0.41, C:0.01, G:0.08, T:0.50
Consensus pattern (7 bp):
TATAGTA
Found at i:2146857 original size:56 final size:56
Alignment explanation
Indices: 2146647--2146859 Score: 185
Period size: 56 Copynumber: 3.8 Consensus size: 56
2146637 TAATATACAC
* *
2146647 TATATTTTATATATTATATATTATT-TT-ATAT-TGTATATTATAG-TAGTATATAG-
1 TATATTATATATATTATATAGTATTATTAATATAT-TATATTATAGTTA-TATATAGT
* * * *
2146700 TATATGATATATATTATATAGTCTTATATATTATATTATAGTATA-TATATATATAG-
1 TATATTATATATATTATATAGTATTAT-TAATATATTATATTATAGT-TATATATAGT
*
2146756 TATA-TAGTATATAGTATATAGTATTATATTATATATATATAATATTATAGTTAT-TATAGT
1 TATATTA-TATATATTATATAGTA-T-TATTA-ATATAT-T-ATATTATAGTTATATATAGT
2146816 TATATTATATATATTAGTATTA-TATTATTAATATATTATATTAT
1 TATATTATATATATTA-TA-TAGTATTATTAATATATTATATTAT
2146860 TATTACTTAT
Statistics
Matches: 131, Mismatches: 12, Indels: 31
0.75 0.07 0.18
Matches are distributed among these distances:
53 21 0.16
54 1 0.01
55 2 0.02
56 43 0.33
57 7 0.05
58 14 0.11
59 11 0.08
60 23 0.18
61 7 0.05
62 2 0.02
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (56 bp):
TATATTATATATATTATATAGTATTATTAATATATTATATTATAGTTATATATAGT
Found at i:2146888 original size:18 final size:18
Alignment explanation
Indices: 2146833--2146878 Score: 69
Period size: 16 Copynumber: 2.7 Consensus size: 18
2146823 TATATATTAG
*
2146833 TATTATATTATTAATA--
1 TATTATATTATTATTACT
2146849 TATTATATTATTATTACT
1 TATTATATTATTATTACT
2146867 TATTATATTATT
1 TATTATATTATT
2146879 TTCATTTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
16 15 0.56
18 12 0.44
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (18 bp):
TATTATATTATTATTACT
Found at i:2148210 original size:7 final size:7
Alignment explanation
Indices: 2148188--2148223 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
2148178 TGGATCGAAC
2148188 TTTTAAA
1 TTTTAAA
2148195 -TTT-AA
1 TTTTAAA
2148200 TTTTAAA
1 TTTTAAA
2148207 TTTTAAA
1 TTTTAAA
2148214 TTTT-AA
1 TTTTAAA
2148220 TTTT
1 TTTT
2148224 CACAATTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
5 2 0.07
6 12 0.44
7 13 0.48
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (7 bp):
TTTTAAA
Found at i:2148221 original size:13 final size:14
Alignment explanation
Indices: 2148188--2148223 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
2148178 TGGATCGAAC
2148188 TTTTAAA-TTT-AA
1 TTTTAAATTTTAAA
2148200 TTTTAAATTTTAAA
1 TTTTAAATTTTAAA
2148214 TTTT-AATTTT
1 TTTTAAATTTT
2148224 CACAATTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 7 0.32
13 9 0.41
14 6 0.27
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (14 bp):
TTTTAAATTTTAAA
Found at i:2153609 original size:23 final size:23
Alignment explanation
Indices: 2153579--2153625 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
2153569 GGGATGAACC
2153579 AGCAGTGAACGAGCCCATAAAAG
1 AGCAGTGAACGAGCCCATAAAAG
2153602 AGCAGTGAACGAGCCCATAAAAG
1 AGCAGTGAACGAGCCCATAAAAG
2153625 A
1 A
2153626 AGATGAAGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.45, C:0.21, G:0.26, T:0.09
Consensus pattern (23 bp):
AGCAGTGAACGAGCCCATAAAAG
Found at i:2164877 original size:20 final size:19
Alignment explanation
Indices: 2164816--2164881 Score: 75
Period size: 20 Copynumber: 3.5 Consensus size: 19
2164806 GCATTCATGA
*
2164816 GGTATCGATACCTGAAGAAC
1 GGTATCGATACCT-AAGGAC
*
2164836 AGTATCGATACC-AAGG--
1 GGTATCGATACCTAAGGAC
2164852 GGTATCGATACCATAAGGAC
1 GGTATCGATACC-TAAGGAC
2164872 GGTATCGATA
1 GGTATCGATA
2164882 TCATCTTTGA
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
16 11 0.28
18 7 0.18
20 21 0.54
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.21
Consensus pattern (19 bp):
GGTATCGATACCTAAGGAC
Found at i:2165459 original size:30 final size:30
Alignment explanation
Indices: 2165423--2165483 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
2165413 AGTCGAGGGT
* *
2165423 TACCTATGTCCTTTAGGACATAAGGATAGG
1 TACCTATGTCCTTCAAGACATAAGGATAGG
*
2165453 TACCTATGTCCTTCAAGACATATGGATAGG
1 TACCTATGTCCTTCAAGACATAAGGATAGG
2165483 T
1 T
2165484 CCTTCGGGAC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (30 bp):
TACCTATGTCCTTCAAGACATAAGGATAGG
Found at i:2168827 original size:7 final size:7
Alignment explanation
Indices: 2168811--2168984 Score: 74
Period size: 7 Copynumber: 23.4 Consensus size: 7
2168801 TAATACACAC
*
2168811 TATATTT
1 TATATTA
2168818 TATA-TA
1 TATATTA
*
2168824 T-TATTT
1 TATATTA
*
2168830 TATATTG
1 TATATTA
2168837 TATATTA
1 TATATTA
*
2168844 TAGTATGCA
1 TA-TAT-TA
2168853 TATAGTATA
1 TATA-T-TA
2168862 TGATATT-
1 T-ATATTA
2168869 TATTATTA
1 TA-TATTA
2168877 TAT-TATA
1 TATAT-TA
2168884 TATATTA
1 TATATTA
2168891 TATATTA
1 TATATTA
2168898 TAGTA-TA
1 TA-TATTA
2168905 TATATT-
1 TATATTA
2168911 TAGTATTATA
1 TA-TA-T-TA
2168921 TATAGTTA
1 TATA-TTA
*
2168929 TATTTTACA
1 TATATT--A
2168938 TATATTA
1 TATATTA
*
2168945 -GTATTA
1 TATATTA
2168951 TATTATTAA
1 TA-TATT-A
2168960 TATATTA
1 TATATTA
*
2168967 TATTGTTA
1 TA-TATTA
*
2168975 TTTATTA
1 TATATTA
2168982 TAT
1 TAT
2168985 TATTTTCATT
Statistics
Matches: 129, Mismatches: 16, Indels: 44
0.68 0.08 0.23
Matches are distributed among these distances:
5 2 0.02
6 15 0.12
7 57 0.44
8 30 0.23
9 20 0.16
10 5 0.04
ACGTcount: A:0.37, C:0.01, G:0.06, T:0.56
Consensus pattern (7 bp):
TATATTA
Found at i:2168895 original size:33 final size:32
Alignment explanation
Indices: 2168811--2168982 Score: 107
Period size: 33 Copynumber: 5.0 Consensus size: 32
2168801 TAATACACAC
* *
2168811 TATATTTTATATATTAT-TTTATATTGTA-TAT
1 TATATTATATATATTATATTGATATT-TATTAT
* *
2168842 TATAGTATGCATATAGTATA-TGATATTTATTAT
1 TATATTAT--ATATATTATATTGATATTTATTAT
* *
2168875 TATATTATATATATTATATATTATAGTATATATATT
1 TATATTATATATATTATAT-TGATA-TTTAT-TA-T
* *
2168911 TAGTATTATATATAGTTATATTTTACATATATTAGTAT
1 TA-TATTATATATA-TTATA--TT-GATAT-TTATTAT
*
2168949 TATATTATTAATATATTATATTGTTATTTATTAT
1 TATATTA-T-ATATATTATATTGATATTTATTAT
2168983 ATTATTTTCA
Statistics
Matches: 110, Mismatches: 14, Indels: 31
0.71 0.09 0.20
Matches are distributed among these distances:
31 15 0.14
32 2 0.02
33 28 0.25
34 10 0.09
35 5 0.05
36 5 0.05
37 16 0.15
38 14 0.13
39 9 0.08
40 6 0.05
ACGTcount: A:0.37, C:0.01, G:0.06, T:0.56
Consensus pattern (32 bp):
TATATTATATATATTATATTGATATTTATTAT
Found at i:2168949 original size:6 final size:5
Alignment explanation
Indices: 2168811--2168987 Score: 87
Period size: 5 Copynumber: 33.6 Consensus size: 5
2168801 TAATACACAC
* * * *
2168811 TATAT TTTA- TATAT TATTT TATATT GTATAT TATAG TATGCA- TATAG
1 TATAT TATAT TATAT TATAT TATA-T -TATAT TATAT TAT--AT TATAT
* *
2168858 TATAT GATATT TATTAT TATAT TATA- TATATT ATATAT TATAG TATA-
1 TATAT TATA-T TA-TAT TATAT TATAT TATA-T -TATAT TATAT TATAT
* *
2168905 TATATT TAGTAT TATA- TATAGT TATAT TTTACA TATAT TAGTAT TATAT
1 TATA-T TA-TAT TATAT TATA-T TATAT TATA-T TATAT TA-TAT TATAT
* *
2168954 TATTAA TATAT TATAT TGTTAT T-TAT TATAT TAT
1 TA-TAT TATAT TATAT T-ATAT TATAT TATAT TAT
2168988 TTTCATTTAT
Statistics
Matches: 135, Mismatches: 16, Indels: 42
0.70 0.08 0.22
Matches are distributed among these distances:
4 20 0.15
5 66 0.49
6 36 0.27
7 13 0.10
ACGTcount: A:0.37, C:0.01, G:0.06, T:0.56
Consensus pattern (5 bp):
TATAT
Found at i:2168984 original size:22 final size:22
Alignment explanation
Indices: 2168886--2168984 Score: 57
Period size: 22 Copynumber: 4.4 Consensus size: 22
2168876 ATATTATATA
*
2168886 TATTATATATTATA--GTATATA
1 TATTATATATTATATTGT-TATT
2168907 TATT-TAGTATTATATATAGTTATAT
1 TATTATA-TATTATAT-T-GTTAT-T
*
2168932 T-TTACATATATTAGTATT-ATA-T
1 TATT--ATATATTA-TATTGTTATT
2168954 TATTAATATATTATATTGTTATT
1 TATT-ATATATTATATTGTTATT
2168977 TATTATAT
1 TATTATAT
2168985 TATTTTCATT
Statistics
Matches: 61, Mismatches: 4, Indels: 25
0.68 0.04 0.28
Matches are distributed among these distances:
20 2 0.03
21 15 0.25
22 16 0.26
23 7 0.11
24 7 0.11
25 3 0.05
26 6 0.10
27 5 0.08
ACGTcount: A:0.37, C:0.01, G:0.05, T:0.57
Consensus pattern (22 bp):
TATTATATATTATATTGTTATT
Found at i:2169543 original size:24 final size:25
Alignment explanation
Indices: 2169497--2169544 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
2169487 ACCATCGGAA
*
2169497 CAACAAAAAAACCACTAGAAATACG
1 CAACAAAAAAACCACAAGAAATACG
*
2169522 CAACAAAAAAACCA-AAGCAATAC
1 CAACAAAAAAACCACAAGAAATAC
2169545 ACTACATAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.62, C:0.25, G:0.06, T:0.06
Consensus pattern (25 bp):
CAACAAAAAAACCACAAGAAATACG
Found at i:2170220 original size:10 final size:9
Alignment explanation
Indices: 2170184--2170212 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
2170174 AGTTTAGTCC
2170184 TTTTTA-TT
1 TTTTTATTT
2170192 TTTTTATTT
1 TTTTTATTT
2170201 TTTTTATTT
1 TTTTTATTT
2170210 TTT
1 TTT
2170213 CTTCTTTTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 6 0.30
9 14 0.70
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (9 bp):
TTTTTATTT
Found at i:2179453 original size:6 final size:6
Alignment explanation
Indices: 2179442--2179467 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
2179432 TAAACAACCA
2179442 TATATT TATATT TATATT TATATT TA
1 TATATT TATATT TATATT TATATT TA
2179468 ATGACCTACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (6 bp):
TATATT
Found at i:2183469 original size:53 final size:52
Alignment explanation
Indices: 2183308--2183470 Score: 218
Period size: 53 Copynumber: 3.1 Consensus size: 52
2183298 CTAATGTAAT
2183308 GAAATGGTAATTCACAAACTCATTATGAATACCATGGATGCACACATAGTGCC
1 GAAATGGTAATTCACAAACTCATTATGAATA-CATGGATGCACACATAGTGCC
* * * *
2183361 AAAATGGTAATTCCCAAACTCATTATGAATACTATGGTTGCACACATAGTTCC
1 GAAATGGTAATTCACAAACTCATTATGAATAC-ATGGATGCACACATAGTGCC
* * * * *
2183414 GAAATGGTAATTCACAAACTTATTAAGAATATCAGGGATGCATACAAAGTGCC
1 GAAATGGTAATTCACAAACTCATTATGAATA-CATGGATGCACACATAGTGCC
2183467 GAAA
1 GAAA
2183471 GTACACATAA
Statistics
Matches: 95, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
52 1 0.01
53 93 0.98
54 1 0.01
ACGTcount: A:0.39, C:0.18, G:0.17, T:0.26
Consensus pattern (52 bp):
GAAATGGTAATTCACAAACTCATTATGAATACATGGATGCACACATAGTGCC
Found at i:2184100 original size:20 final size:20
Alignment explanation
Indices: 2184055--2184105 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
2184045 TTTTCAATTA
*
2184055 CAGTATCGATACCTTCCTCT
1 CAGTATCGATACCTTCCACT
**
2184075 TGGTATCGATACC-TCCACAT
1 CAGTATCGATACCTTCCAC-T
2184095 CAGTATCGATA
1 CAGTATCGATA
2184106 ATACTTTAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
19 4 0.16
20 21 0.84
ACGTcount: A:0.25, C:0.29, G:0.14, T:0.31
Consensus pattern (20 bp):
CAGTATCGATACCTTCCACT
Found at i:2197357 original size:3 final size:3
Alignment explanation
Indices: 2197349--2197405 Score: 62
Period size: 3 Copynumber: 19.0 Consensus size: 3
2197339 TTCCTCACTC
* * *
2197349 TCA TCA TCA TCA TCA TCA TCA TCA TCA CCA CCA -CAA CCA TCA TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC-A TCA TCA TCA
*
2197394 TCG TCA TCA TCA
1 TCA TCA TCA TCA
2197406 GGAGCAGATA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
2 1 0.02
3 46 0.96
4 1 0.02
ACGTcount: A:0.33, C:0.39, G:0.02, T:0.26
Consensus pattern (3 bp):
TCA
Found at i:2198497 original size:191 final size:191
Alignment explanation
Indices: 2198173--2198556 Score: 768
Period size: 191 Copynumber: 2.0 Consensus size: 191
2198163 AAACATCTAA
2198173 TGGGCCCCTTATCGACACCGTTTTTCGCCCGGGAGAGGAAAAAACTTAGTACGACTTGGGGGTTT
1 TGGGCCCCTTATCGACACCGTTTTTCGCCCGGGAGAGGAAAAAACTTAGTACGACTTGGGGGTTT
2198238 TCCTTTGAAAAGATTTTGAAATATTTCGGAGTCGCCATCGACCTTTTGTGTTAGGTAAGTCGAAT
66 TCCTTTGAAAAGATTTTGAAATATTTCGGAGTCGCCATCGACCTTTTGTGTTAGGTAAGTCGAAT
2198303 ACCTAAAAATTTTCTTTATAAGTGTTTTTAAGACAACATCTTTTTAAAAGATAAATTAGTT
131 ACCTAAAAATTTTCTTTATAAGTGTTTTTAAGACAACATCTTTTTAAAAGATAAATTAGTT
2198364 TGGGCCCCTTATCGACACCGTTTTTCGCCCGGGAGAGGAAAAAACTTAGTACGACTTGGGGGTTT
1 TGGGCCCCTTATCGACACCGTTTTTCGCCCGGGAGAGGAAAAAACTTAGTACGACTTGGGGGTTT
2198429 TCCTTTGAAAAGATTTTGAAATATTTCGGAGTCGCCATCGACCTTTTGTGTTAGGTAAGTCGAAT
66 TCCTTTGAAAAGATTTTGAAATATTTCGGAGTCGCCATCGACCTTTTGTGTTAGGTAAGTCGAAT
2198494 ACCTAAAAATTTTCTTTATAAGTGTTTTTAAGACAACATCTTTTTAAAAGATAAATTAGTT
131 ACCTAAAAATTTTCTTTATAAGTGTTTTTAAGACAACATCTTTTTAAAAGATAAATTAGTT
2198555 TG
1 TG
2198557 CGTGTAACCA
Statistics
Matches: 193, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
191 193 1.00
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (191 bp):
TGGGCCCCTTATCGACACCGTTTTTCGCCCGGGAGAGGAAAAAACTTAGTACGACTTGGGGGTTT
TCCTTTGAAAAGATTTTGAAATATTTCGGAGTCGCCATCGACCTTTTGTGTTAGGTAAGTCGAAT
ACCTAAAAATTTTCTTTATAAGTGTTTTTAAGACAACATCTTTTTAAAAGATAAATTAGTT
Found at i:2199490 original size:15 final size:14
Alignment explanation
Indices: 2199470--2199503 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
2199460 TAAAATGAAC
2199470 ATAAAGTCCTAAATA
1 ATAAAG-CCTAAATA
*
2199485 ATAAAGCTTAAATA
1 ATAAAGCCTAAATA
2199499 ATAAA
1 ATAAA
2199504 TACTAAAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.59, C:0.09, G:0.06, T:0.26
Consensus pattern (14 bp):
ATAAAGCCTAAATA
Found at i:2200524 original size:2 final size:2
Alignment explanation
Indices: 2200517--2200594 Score: 156
Period size: 2 Copynumber: 39.0 Consensus size: 2
2200507 TTTCTAACCC
2200517 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2200559 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2200595 CTTGAACTAA
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 76 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2201407 original size:38 final size:39
Alignment explanation
Indices: 2201364--2201476 Score: 97
Period size: 39 Copynumber: 2.9 Consensus size: 39
2201354 GTGAGGTGTA
*
2201364 TTTTGTTTTAAG-AAAAATAATCTCAAGT-GAGAT-AAATC
1 TTTTGTTTCAAGTAAAAAT-ATCTCAA-TCGAGATAAAATC
* *
2201402 TTTTGTTTCGAGTAAAACTATCTCAATCGAGATAAAATC
1 TTTTGTTTCAAGTAAAAATATCTCAATCGAGATAAAATC
* * ** * * *
2201441 TTCTGTTTCGAGGGAAACTATCTCAAGCAAGATAAA
1 TTTTGTTTCAAGTAAAAATATCTCAATCGAGATAAA
2201477 GTTCATTTCA
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
37 1 0.02
38 22 0.34
39 41 0.64
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (39 bp):
TTTTGTTTCAAGTAAAAATATCTCAATCGAGATAAAATC
Found at i:2201451 original size:20 final size:20
Alignment explanation
Indices: 2201392--2201452 Score: 56
Period size: 19 Copynumber: 3.1 Consensus size: 20
2201382 AATCTCAAGT
*
2201392 GAGAT-AAATCTTTTGTTTC
1 GAGATAAAATCTTCTGTTTC
***
2201411 GAG-TAAAA-CTATCTCAATC
1 GAGATAAAATCT-TCTGTTTC
2201430 GAGATAAAATCTTCTGTTTC
1 GAGATAAAATCTTCTGTTTC
2201450 GAG
1 GAG
2201453 GGAAACTATC
Statistics
Matches: 31, Mismatches: 7, Indels: 7
0.69 0.16 0.16
Matches are distributed among these distances:
18 3 0.10
19 13 0.42
20 13 0.42
21 2 0.06
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Consensus pattern (20 bp):
GAGATAAAATCTTCTGTTTC
Found at i:2201451 original size:39 final size:39
Alignment explanation
Indices: 2201383--2201514 Score: 121
Period size: 39 Copynumber: 3.5 Consensus size: 39
2201373 AAGAAAAATA
* *
2201383 ATCTCAAGT-GAGAT-AAATCTTTTGTTTCGAGTAAAACT
1 ATCTCAA-TCGAGATAAAATCTTCTGTTTCGAGGAAAACT
*
2201421 ATCTCAATCGAGATAAAATCTTCTGTTTCGAGGGAAACT
1 ATCTCAATCGAGATAAAATCTTCTGTTTCGAGGAAAACT
* * * * * *
2201460 ATCTCAAGCAAGAT-AAA-GTTC-ATTTCAAGGGAAACT
1 ATCTCAATCGAGATAAAATCTTCTGTTTCGAGGAAAACT
* *
2201496 ATCTCAAGCAAGATAAAAT
1 ATCTCAATCGAGATAAAAT
2201515 TTGTTTCAAG
Statistics
Matches: 82, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
36 27 0.33
37 7 0.09
38 15 0.18
39 33 0.40
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.30
Consensus pattern (39 bp):
ATCTCAATCGAGATAAAATCTTCTGTTTCGAGGAAAACT
Found at i:2201498 original size:36 final size:36
Alignment explanation
Indices: 2201416--2201748 Score: 231
Period size: 36 Copynumber: 9.1 Consensus size: 36
2201406 GTTTCGAGTA
* * *
2201416 AAACTATCTCAATCGAGATAAAATCTTCTGTTTCGAGGG
1 AAACTATCTCAAGCAAGATAAAA--TT-TGTTTCAAGGG
* **
2201455 AAACTATCTCAAGCAAGATAAAGTTCATTTCAAGGG
1 AAACTATCTCAAGCAAGATAAAATTTGTTTCAAGGG
*
2201491 AAACTATCTCAAGCAAGATAAAATTTGTTTCAAGAG
1 AAACTATCTCAAGCAAGATAAAATTTGTTTCAAGGG
* ** *
2201527 AAACTGTCTCAAGGGAGACAAAATTTGTTTCAAGGG
1 AAACTATCTCAAGCAAGATAAAATTTGTTTCAAGGG
* * * ** * *
2201563 AAACTTTTTCATGGGAGACAAAATTTTGTTTCAAGAG
1 AAACTATCTCAAGCAAGATAAAA-TTTGTTTCAAGGG
* ** *
2201600 AAACTGTCTCAAGGGAGATGAAATTTGTTTCAAGGG
1 AAACTATCTCAAGCAAGATAAAATTTGTTTCAAGGG
* * *
2201636 AAGCTGTCTCAAG--GGATACGAAATTTGTTTCAAGGG
1 AAACTATCTCAAGCAAGATA--AAATTTGTTTCAAGGG
* * * ** * *
2201672 AAGCTGTCTCTAG-AGAGGCAAAACTTTGTTTCTAGAG
1 AAACTATCTCAAGCA-AGATAAAA-TTTGTTTCAAGGG
* * ** * *
2201709 AAATTGTCTCAAGGGAGACAAAATTTGTTTCGAGGG
1 AAACTATCTCAAGCAAGATAAAATTTGTTTCAAGGG
2201745 AAAC
1 AAAC
2201749 AGATTCAAAG
Statistics
Matches: 245, Mismatches: 42, Indels: 17
0.81 0.14 0.06
Matches are distributed among these distances:
34 3 0.01
36 160 0.65
37 60 0.24
38 2 0.01
39 20 0.08
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (36 bp):
AAACTATCTCAAGCAAGATAAAATTTGTTTCAAGGG
Found at i:2201611 original size:73 final size:72
Alignment explanation
Indices: 2201482--2202085 Score: 389
Period size: 73 Copynumber: 8.5 Consensus size: 72
2201472 ATAAAGTTCA
* ** *
2201482 TTTCAAGGGAAACTATCTCAAGCAAGATAAAATTTGTTTCAAGAGAAACTGTCTCAAGGGAGACA
1 TTTCAAGGGAAACTTTCTCAAGGGAGACAAAATTTGTTTCAAGAGAAACTGTCTCAAGGGAGACA
2201547 AAATTTG
66 AAATTTG
* * *
2201554 TTTCAAGGGAAACTTTTTCATGGGAGACAAAATTTTGTTTCAAGAGAAACTGTCTCAAGGGAGAT
1 TTTCAAGGGAAACTTTCTCAAGGGAGACAAAA-TTTGTTTCAAGAGAAACTGTCTCAAGGGAGAC
*
2201619 GAAATTTG
65 AAAATTTG
* * * * * * * * *
2201627 TTTCAAGGGAAGCTGTCTCAAGGGATACGAAATTTGTTTCAAGGGAAGCTGTCTCTAGAGAGGCA
1 TTTCAAGGGAAACTTTCTCAAGGGAGACAAAATTTGTTTCAAGAGAAACTGTCTCAAGGGAGACA
2201692 AAACTTTG
66 AAA-TTTG
* * * * *
2201700 TTTCTAGAGAAA-TTGTCTCAAGGGAGACAAAATTTGTTTCGAGGGAAACAGAT-TCAA---AG-
1 TTTCAAGGGAAACTT-TCTCAAGGGAGACAAAATTTGTTTCAAGAGAAACTG-TCTCAAGGGAGA
**
2201759 --ATTTTGTG
64 CAAAATT-TG
* * * *
2201767 TTTCAAGAGAAACTGTCTCAAGAGTGACAAAATTTGTTTCAAGAGAAACTGTCTCAAGGGAGACA
1 TTTCAAGGGAAACTTTCTCAAGGGAGACAAAATTTGTTTCAAGAGAAACTGTCTCAAGGGAGACA
*
2201832 AAA-CTG
66 AAATTTG
* * * * * * * *
2201838 TCTCAAGGGAGAAAAAACTGTCTTAAGGGTGACAAAACTTGTTTCAAGGGAATCTGTCTCAAGAG
1 TTTCAA-GG-G---AAACTTTCTCAAGGGAGACAAAATTTGTTTCAAGAGAAACTGTCTCAAGGG
2201903 AGACAAAATTTG
61 AGACAAAATTTG
* * * * **
2201915 TTT-AAGAGAAA-TGTTTTCAA---AG-----TTTATGTTTCAAGGGAAACAATCTCAAGGGAGA
1 TTTCAAGGGAAACT-TTCTCAAGGGAGACAAAATT-TGTTTCAAGAGAAACTGTCTCAAGGGAGA
*
2201970 CAAACCTTTG
64 CAAA-ATTTG
* * * *
2201980 TTACAAGGGAAACATAT-TCAA---AG----ATTTTGGTTTCAAGAGAAACTGTCTCAAGAGAGA
1 TTTCAAGGGAAAC-TTTCTCAAGGGAGACAAAATTT-GTTTCAAGAGAAACTGTCTCAAGGGAGA
2202037 CAAAATTTG
64 CAAAATTTG
* * * * * *
2202046 TTCTGAAAGGAAAATGTCTCAAGTGATACAAAATTTGTTT
1 TT-TCAAGGGAAACTTTCTCAAGGGAGACAAAATTTGTTT
2202086 TTTAGAGAAA
Statistics
Matches: 416, Mismatches: 80, Indels: 71
0.73 0.14 0.13
Matches are distributed among these distances:
63 1 0.00
64 29 0.07
65 6 0.01
66 25 0.06
67 92 0.22
68 3 0.01
70 6 0.01
71 14 0.03
72 57 0.14
73 117 0.28
74 6 0.01
75 1 0.00
76 55 0.13
77 4 0.01
ACGTcount: A:0.37, C:0.13, G:0.22, T:0.28
Consensus pattern (72 bp):
TTTCAAGGGAAACTTTCTCAAGGGAGACAAAATTTGTTTCAAGAGAAACTGTCTCAAGGGAGACA
AAATTTG
Found at i:2201624 original size:109 final size:108
Alignment explanation
Indices: 2201444--2202085 Score: 458
Period size: 109 Copynumber: 6.0 Consensus size: 108
2201434 TAAAATCTTC
* * * * ** * * **
2201444 TGTTTCGAGGGAAACTATCTCAAGCA-AGATAAAGTTCATTTCAAGGGAAACTATCTCAAGCAAG
1 TGTTTCAAGGGAAACTGTCTCAAG-AGAGACAAAATTTGTTTCAAGAGAAACTGTCTCAAGGGAG
2201508 ATAAAATTTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATT
65 ATAAAATTTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATT
* * * *
2201552 TGTTTCAAGGGAAACTTTTTCATGGGAGACAAAATTTTGTTTCAAGAGAAACTGTCTCAAGGGAG
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA-TTTGTTTCAAGAGAAACTGTCTCAAGGGAG
* * * * *
2201617 ATGAAATTTGTTTCAAGGGAAGCTGTCTCAAGGGATACGAAATT
65 ATAAAATTTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATT
* * * * *
2201661 TGTTTCAAGGGAAGCTGTCTCTAGAGAGGCAAAACTTTGTTTCTAGAGAAATTGTCTCAAGGGAG
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA-TTTGTTTCAAGAGAAACTGTCTCAAGGGAG
* * * * **
2201726 ACAAAATTTGTTTCGAGGGAAACAGAT-TCAA---AG---ATTTT
65 ATAAAATTTGTTTCAAGAGAAACTG-TCTCAAGGGAGACAAAATT
* *
2201764 GTGTTTCAAGAGAAACTGTCTCAAGAGTGACAAAATTTGTTTCAAGAGAAACTGTCTCAAGGGAG
1 -TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACTGTCTCAAGGGAG
* * * * * *
2201829 ACAAAA-CTGTCTCAAGGGAGAAAAAACTGTCTTAAGGGTGACAAAACT
65 ATAAAATTTGTTTCAA--GAG---AAACTGTCTCAAGGGAGACAAAATT
* *
2201877 TGTTTCAAGGGAATCTGTCTCAAGAGAGACAAAATTTGTTT-AAGAGAAA-TGTTTTCAA---AG
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACTG-TCTCAAGGGAG
* ** *
2201937 -T----TTATGTTTCAAGGGAAACAATCTCAAGGGAGACAAACCTT
65 ATAAAATT-TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAA-ATT
* * * *
2201978 TGTTACAAGGGAAACATAT-TC-A-A-AG----ATTTTGGTTTCAAGAGAAACTGTCTCAAGAGA
1 TGTTTCAAGGGAAAC-TGTCTCAAGAGAGACAAAATTT-GTTTCAAGAGAAACTGTCTCAAGGGA
* * * * *
2202035 GACAAAATTTGTTCTGAA-AGGAAAATGTCTCAAGTGATACAAAATT
64 GATAAAATTTGTT-TCAAGA-GAAACTGTCTCAAGGGAGACAAAATT
2202081 TGTTT
1 TGTTT
2202086 TTTAGAGAAA
Statistics
Matches: 418, Mismatches: 82, Indels: 73
0.73 0.14 0.13
Matches are distributed among these distances:
94 4 0.01
95 4 0.01
96 13 0.03
97 2 0.00
98 2 0.00
99 3 0.01
100 19 0.05
101 16 0.04
102 8 0.02
103 49 0.12
104 54 0.13
105 7 0.02
106 2 0.00
107 8 0.02
108 28 0.07
109 142 0.34
110 4 0.01
111 13 0.03
112 38 0.09
113 2 0.00
ACGTcount: A:0.37, C:0.13, G:0.22, T:0.28
Consensus pattern (108 bp):
TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACTGTCTCAAGGGAGA
TAAAATTTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATT
Found at i:2201810 original size:36 final size:36
Alignment explanation
Indices: 2201765--2201925 Score: 173
Period size: 36 Copynumber: 4.4 Consensus size: 36
2201755 AAAGATTTTG
*
2201765 TGTTTCAAGAGAAACTGTCTCAAGAGTGACAAAATT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT
* *
2201801 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAA-C
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT
* * * * *
2201836 TGTCTCAAGGGAGAAAAAACTGTCTTAAGGGTGACAAAACT
1 TGTTTCAA--GAG---AAACTGTCTCAAGAGAGACAAAATT
* *
2201877 TGTTTCAAGGGAATCTGTCTCAAGAGAGACAAAATT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT
2201913 TGTTT-AAGAGAAA
1 TGTTTCAAGAGAAA
2201926 TGTTTTCAAA
Statistics
Matches: 103, Mismatches: 16, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
35 13 0.13
36 57 0.55
37 3 0.03
39 2 0.02
40 21 0.20
41 7 0.07
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.25
Consensus pattern (36 bp):
TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT
Found at i:2201860 original size:40 final size:41
Alignment explanation
Indices: 2201776--2201888 Score: 121
Period size: 40 Copynumber: 2.9 Consensus size: 41
2201766 GTTTCAAGAG
* * * *
2201776 AAACTGTCTCAAGAGTGACAAAATTTGTTTCAA--GAG---
1 AAACTGTCTCAAGGGAGACAAAACTTGTCTCAAGGGAGAAA
2201812 AAACTGTCTCAAGGGAGACAAAAC-TGTCTCAAGGGAGAAA
1 AAACTGTCTCAAGGGAGACAAAACTTGTCTCAAGGGAGAAA
* * *
2201852 AAACTGTCTTAAGGGTGACAAAACTTGTTTCAAGGGA
1 AAACTGTCTCAAGGGAGACAAAACTTGTCTCAAGGGA
2201889 ATCTGTCTCA
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
35 7 0.11
36 21 0.33
37 3 0.05
40 22 0.34
41 11 0.17
ACGTcount: A:0.39, C:0.15, G:0.23, T:0.23
Consensus pattern (41 bp):
AAACTGTCTCAAGGGAGACAAAACTTGTCTCAAGGGAGAAA
Found at i:2201886 original size:21 final size:20
Alignment explanation
Indices: 2201812--2201888 Score: 109
Period size: 20 Copynumber: 3.8 Consensus size: 20
2201802 GTTTCAAGAG
2201812 AAACTGTCTCAAGGGAGACA
1 AAACTGTCTCAAGGGAGACA
*
2201832 AAACTGTCTCAAGGGAGAAA
1 AAACTGTCTCAAGGGAGACA
* *
2201852 AAACTGTCTTAAGGGTGACA
1 AAACTGTCTCAAGGGAGACA
*
2201872 AAACTTGTTTCAAGGGA
1 AAAC-TGTCTCAAGGGA
2201889 ATCTGTCTCA
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
20 40 0.82
21 9 0.18
ACGTcount: A:0.39, C:0.16, G:0.25, T:0.21
Consensus pattern (20 bp):
AAACTGTCTCAAGGGAGACA
Found at i:2201947 original size:176 final size:173
Alignment explanation
Indices: 2201484--2201992 Score: 433
Period size: 176 Copynumber: 2.9 Consensus size: 173
2201474 AAAGTTCATT
* * ** * *
2201484 TCAAGGGAAACTATCTCAAGCA-AGATAAAA-TTTGTTTCAAGAGAAACTGTCTCAAGGGAGACA
1 TCAAGGGAAACTGTCTCTAG-AGAGGCAAAACTTTGTTTCAAGAGAAATTGTCTCAAGAGAGACA
* ** *
2201547 AAATTTGTTTCAAGGGAAACTTTTTCATGGGAGACAAAATTTTGTTTCAAGAGAAACTGTCTCAA
65 AAATTTGTTTCAAGAGAAA------CA---GATTCAAAGTTTTGTTTCAAGAGAAACTGTCTCAA
** * * ** *
2201612 GGGAGATGAAATTTGTTTCAAGGGAAGCTGTCTCAAGGGATACGAAATTTGTT
121 GGGAGACAAAATTTGTTTCAAGGGAAACTGTCTCAAGGGAGACGAAAACTGTC
* * *
2201665 TCAAGGGAAGCTGTCTCTAGAGAGGCAAAACTTTGTTTCTAGAGAAATTGTCTCAAGGGAGACAA
1 TCAAGGGAAACTGTCTCTAGAGAGGCAAAACTTTGTTTCAAGAGAAATTGTCTCAAGAGAGACAA
* * * *
2201730 AATTTGTTTCGAGGGAAACAGATTCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCAAGAGTGAC
66 AATTTGTTTCAAGAGAAACAGATTCAAAG--TTT-TGTTTCAAGAGAAACTGTCTCAAGGGAGAC
*
2201795 AAAATTTGTTTCAAGAGAAACTGTCTCAAGGGAGAC-AAAACTGTC
128 AAAATTTGTTTCAAGGGAAACTGTCTCAAGGGAGACGAAAACTGTC
* *
2201840 TCAAGGGAGAAAAAACTGTCT-TA-AGGGTGACAAAAC-TTGTTTCAAG-GGAATCTGTCTCAAG
1 TCAA-GG-G---AAACTGTCTCTAGAGAG-G-CAAAACTTTGTTTCAAGAGAAAT-TGTCTCAAG
* * * **
2201901 AGAGACAAAATTTGTTT-AAGAGAAA-TGTTTTCAAAGTTTATGTTTCAAGGGAAACAATCTCAA
58 AGAGACAAAATTTGTTTCAAGAGAAACAG-ATTCAAAGTTT-TGTTTCAAGAGAAACTGTCTCAA
* *
2201964 GGGAGACAAACCTTTGTTACAAGGGAAAC
121 GGGAGACAAA-ATTTGTTTCAAGGGAAAC
2201993 ATATTCAAAG
Statistics
Matches: 274, Mismatches: 39, Indels: 34
0.79 0.11 0.10
Matches are distributed among these distances:
173 6 0.02
175 13 0.05
176 94 0.34
177 17 0.06
178 20 0.07
179 37 0.14
180 15 0.05
181 23 0.08
182 49 0.18
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.27
Consensus pattern (173 bp):
TCAAGGGAAACTGTCTCTAGAGAGGCAAAACTTTGTTTCAAGAGAAATTGTCTCAAGAGAGACAA
AATTTGTTTCAAGAGAAACAGATTCAAAGTTTTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAA
ATTTGTTTCAAGGGAAACTGTCTCAAGGGAGACGAAAACTGTC
Found at i:2202029 original size:67 final size:64
Alignment explanation
Indices: 2201877--2202048 Score: 202
Period size: 67 Copynumber: 2.6 Consensus size: 64
2201867 TGACAAAACT
* * ** *
2201877 TGTTTCAAGGGAATCTGTCTCAAGAGAGACAAAATTTGTTTAAGAGAAATGTTTTCAAAGTTTA
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTGTTCAAGAGAAACATATTCAAAGTTTA
** * * *
2201941 TGTTTCAAGGGAAACAATCTCAAGGGAGACAAACCTTTGTTACAAGGGAAACATATTCAAAGATT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAA-ATTTGTT-CAAGAGAAACATATTCAAAG-TT
2202006 T-
63 TA
*
2202007 TGGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTC
1 T-GTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTGTTC
2202049 TGAAAGGAAA
Statistics
Matches: 89, Mismatches: 15, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
64 29 0.33
65 7 0.08
66 22 0.25
67 31 0.35
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (64 bp):
TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTGTTCAAGAGAAACATATTCAAAGTTTA
Found at i:2202096 original size:37 final size:36
Alignment explanation
Indices: 2202015--2202084 Score: 95
Period size: 37 Copynumber: 1.9 Consensus size: 36
2202005 TTTGGTTTCA
*
2202015 AGAGAAACTGTCTCAAGAGAGACAAAATTTGTTCTG
1 AGAGAAAATGTCTCAAGAGAGACAAAATTTGTTCTG
* * *
2202051 AAAGGAAAATGTCTCAAGTGATACAAAATTTGTT
1 AGA-GAAAATGTCTCAAGAGAGACAAAATTTGTT
2202085 TTTTAGAGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
36 2 0.07
37 27 0.93
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.27
Consensus pattern (36 bp):
AGAGAAAATGTCTCAAGAGAGACAAAATTTGTTCTG
Found at i:2202138 original size:74 final size:71
Alignment explanation
Indices: 2202052--2202191 Score: 181
Period size: 72 Copynumber: 1.9 Consensus size: 71
2202042 TTTGTTCTGA
* * * * *
2202052 AAGGAAAATGTCTCAAGTGATACAAAATTTGTTTTTTAGAGAAAACAATCTTAAGTGAGATTAAT
1 AAGGAAAATGTCTCAAGCGAGACAAAATTTG-TTCTTAG-GAAAACAATCTCAAGTGAGATCAAT
2202117 TTTATTTT
64 TTTATTTT
* * *
2202125 AAGGAAAATTGTCTCCAGCGAGACAAAATTTGTTCTTAGGAAAACTATCTCATGTGAGATCAATT
1 AAGGAAAA-TGTCTCAAGCGAGACAAAATTTGTTCTTAGGAAAACAATCTCAAGTGAGATCAATT
2202190 TT
65 TT
2202192 GTTCTAAATA
Statistics
Matches: 58, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
72 24 0.41
73 14 0.24
74 20 0.34
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (71 bp):
AAGGAAAATGTCTCAAGCGAGACAAAATTTGTTCTTAGGAAAACAATCTCAAGTGAGATCAATTT
TATTTT
Found at i:2202308 original size:67 final size:67
Alignment explanation
Indices: 2202221--2202446 Score: 232
Period size: 67 Copynumber: 3.4 Consensus size: 67
2202211 TTTGGAAAAA
* * ** *
2202221 TGTCTCAAGCA-AGACGAAATTTGTTCTGAGAGAGGCGATCTCAAAGATTTTGTGTTTCAAGAGA
1 TGTCTCAAG-AGAGACAAAATTTGTTCTAAGAGAAACGATTTCAAAGATTTTGTGTTTCAAGAGA
2202285 AAC
65 AAC
* * * *
2202288 TGTCTCAAGAGAGACAAAATTTGTT-TCAAGAGAAATGTTTTCAAAG--TTTATGTTTCAAGGGA
1 TGTCTCAAGAGAGACAAAATTTGTTCT-AAGAGAAACGATTTCAAAGATTTTGTGTTTCAAGAGA
2202350 AAC
65 AAC
* * *
2202353 AGTCTCAAGGGAGACAAAACTTTGTTAC-AAGGGAAAC-ATATTCAAAGATTTTG-GTTTCAAGA
1 TGTCTCAAGAGAGACAAAA-TTTGTT-CTAAGAGAAACGAT-TTCAAAGATTTTGTGTTTCAAGA
2202415 GAAAC
63 GAAAC
* *
2202420 TGTCTCAATAGATACAAAATTTGTTCT
1 TGTCTCAAGAGAGACAAAATTTGTTCT
2202447 GAAAGGAAAA
Statistics
Matches: 130, Mismatches: 20, Indels: 19
0.77 0.12 0.11
Matches are distributed among these distances:
65 36 0.28
66 28 0.22
67 63 0.48
68 3 0.02
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.30
Consensus pattern (67 bp):
TGTCTCAAGAGAGACAAAATTTGTTCTAAGAGAAACGATTTCAAAGATTTTGTGTTTCAAGAGAA
AC
Found at i:2202494 original size:37 final size:36
Alignment explanation
Indices: 2202412--2202481 Score: 88
Period size: 37 Copynumber: 1.9 Consensus size: 36
2202402 TTTGGTTTCA
* *
2202412 AGAGAAACTGTCTCAATAGATACAAAATTTGTTCTG
1 AGAGAAAATGTCTCAATAGATAAAAAATTTGTTCTG
*
2202448 AAAGGAAAATGTCTCAAGT-GATAAAAAATTTGTT
1 AGA-GAAAATGTCTCAA-TAGATAAAAAATTTGTT
2202482 TTTTAGAGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
36 2 0.07
37 26 0.90
38 1 0.03
ACGTcount: A:0.43, C:0.10, G:0.17, T:0.30
Consensus pattern (36 bp):
AGAGAAAATGTCTCAATAGATAAAAAATTTGTTCTG
Found at i:2202660 original size:396 final size:396
Alignment explanation
Indices: 2201877--2202662 Score: 1405
Period size: 397 Copynumber: 2.0 Consensus size: 396
2201867 TGACAAAACT
* *
2201877 TGTTTCAAGGGAATCTGTCTCAAGAGAGACAAAATTTGTTTAAGAGAAATGTTTTCAAAGTTTAT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTTAAGAGAAATGTTTTCAAAGTTTAT
*
2201942 GTTTCAAGGGAAACAATCTCAAGGGAGACAAACCTTTGTTACAAGGGAAACATATTCAAAGATTT
66 GTTTCAAGGGAAACAATCTCAAGGGAGACAAAACTTTGTTACAAGGGAAACATATTCAAAGATTT
2202007 TGGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTCTGAAAGGAAAATGTCTCAAGTGA
131 TGGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTCTGAAAGGAAAATGTCTCAAGTGA
*
2202072 TACAAAATTTGTTTTTTAGAGAAAACAATCTTAAGTGAGATTAATTTTATTTTAAGGAAAATTGT
196 TAAAAAATTTGTTTTTTAGAGAAAACAATCTTAAGTGAGATTAATTTTATTTTAAGGAAAATTGT
2202137 CTCCAGCGAGACAAAATTTGTTCTTAGGAAAACTATCTCATGTGAGATCAATTTTGTTCTAAATA
261 CTCCAGCGAGACAAAATTTGTTCTTAGGAAAACTATCTCATGTGAGATCAATTTTGTTCTAAATA
* *
2202202 TTTCAAAATTTTGGAAAAATGTCTCAAGCAAGACGAAATTTGTTCTGAGAGAGGCGATCTCAAAG
326 TTTCAAAATTTTGGAAAAATGTCTCAAGCAAGACGAAATTTGTTCTGAGAGAGACAATCTCAAAG
2202267 ATTTTG
391 ATTTTG
2202273 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAATGTTTTCAAAGTTTA
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTT-AAGAGAAATGTTTTCAAAGTTTA
*
2202338 TGTTTCAAGGGAAACAGTCTCAAGGGAGACAAAACTTTGTTACAAGGGAAACATATTCAAAGATT
65 TGTTTCAAGGGAAACAATCTCAAGGGAGACAAAACTTTGTTACAAGGGAAACATATTCAAAGATT
* *
2202403 TTGGTTTCAAGAGAAACTGTCTCAATAGATACAAAATTTGTTCTGAAAGGAAAATGTCTCAAGTG
130 TTGGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTCTGAAAGGAAAATGTCTCAAGTG
* *
2202468 ATAAAAAATTTGTTTTTTAGAGAAAATAATCTCT-AGTGAGATTAATTTTATTTTAAGGAACATT
195 ATAAAAAATTTGTTTTTTAGAGAAAACAATCT-TAAGTGAGATTAATTTTATTTTAAGGAAAATT
*
2202532 GTCTCCAGCGATACAAAA-TTGTTCTTAGGAAAACTATCTCATGTGAGATCAATTTTGTTCTAAA
259 GTCTCCAGCGAGACAAAATTTGTTCTTAGGAAAACTATCTCATGTGAGATCAATTTTGTTCTAAA
* * *
2202596 TATTTCAAAATTTTGGGAAAATGTCTCAAGCAAGACGAAGTTTGTTTTGAGAGAGACAATCTCAA
324 TATTTCAAAATTTTGGAAAAATGTCTCAAGCAAGACGAAATTTGTTCTGAGAGAGACAATCTCAA
2202661 AG
389 AG
2202663 GATTATAAAC
Statistics
Matches: 373, Mismatches: 15, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
396 147 0.39
397 225 0.60
398 1 0.00
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.32
Consensus pattern (396 bp):
TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTTAAGAGAAATGTTTTCAAAGTTTAT
GTTTCAAGGGAAACAATCTCAAGGGAGACAAAACTTTGTTACAAGGGAAACATATTCAAAGATTT
TGGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTCTGAAAGGAAAATGTCTCAAGTGA
TAAAAAATTTGTTTTTTAGAGAAAACAATCTTAAGTGAGATTAATTTTATTTTAAGGAAAATTGT
CTCCAGCGAGACAAAATTTGTTCTTAGGAAAACTATCTCATGTGAGATCAATTTTGTTCTAAATA
TTTCAAAATTTTGGAAAAATGTCTCAAGCAAGACGAAATTTGTTCTGAGAGAGACAATCTCAAAG
ATTTTG
Found at i:2209059 original size:13 final size:13
Alignment explanation
Indices: 2209043--2209072 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
2209033 GGAGATCCAA
2209043 ACCCTCAATCCTC
1 ACCCTCAATCCTC
2209056 ACCCTCAATCCTC
1 ACCCTCAATCCTC
2209069 ACCC
1 ACCC
2209073 ATTATAGGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.23, C:0.57, G:0.00, T:0.20
Consensus pattern (13 bp):
ACCCTCAATCCTC
Found at i:2213445 original size:19 final size:20
Alignment explanation
Indices: 2213408--2213445 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
2213398 AAGAGGGTTT
2213408 GGGTTTTGATATGGTTTGAG
1 GGGTTTTGATATGGTTTGAG
2213428 GGGTTTTGATAT-GTTTGA
1 GGGTTTTGATATGGTTTGA
2213446 ATGAATAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.16, C:0.00, G:0.37, T:0.47
Consensus pattern (20 bp):
GGGTTTTGATATGGTTTGAG
Found at i:2215026 original size:30 final size:30
Alignment explanation
Indices: 2214812--2215033 Score: 237
Period size: 30 Copynumber: 7.4 Consensus size: 30
2214802 ATAGTCATTA
* * *
2214812 TTCTGATTCTGTATGGGACCACATTCCACG
1 TTCTGATTCTGTATGGGACTACGTTCCCCG
* * * * * **
2214842 TTCTAATTTTGTATCGGACAACATTCCTTG
1 TTCTGATTCTGTATGGGACTACGTTCCCCG
* *
2214872 TTCTGATTCTGTATGAGACTACGTTTCCCG
1 TTCTGATTCTGTATGGGACTACGTTCCCCG
*
2214902 TTCTAATTCTGTATGGGACTACGTTCCCCG
1 TTCTGATTCTGTATGGGACTACGTTCCCCG
* * * *
2214932 TTCTGATTCTGCATGAGACTATGTTCCCCA
1 TTCTGATTCTGTATGGGACTACGTTCCCCG
* * * *
2214962 TTCTGATTCTGTACGCGACTATGTTCCTCG
1 TTCTGATTCTGTATGGGACTACGTTCCCCG
*
2214992 TTCTGATTCTATATGGGACTACGTTCCCCG
1 TTCTGATTCTGTATGGGACTACGTTCCCCG
*
2215022 TTCTGTTTCTGT
1 TTCTGATTCTGT
2215034 TTGAAATCCT
Statistics
Matches: 157, Mismatches: 35, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 157 1.00
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (30 bp):
TTCTGATTCTGTATGGGACTACGTTCCCCG
Found at i:2217171 original size:48 final size:48
Alignment explanation
Indices: 2217100--2217196 Score: 185
Period size: 48 Copynumber: 2.0 Consensus size: 48
2217090 TACGGGATTG
*
2217100 AAACTTATAACTTATTATCTGCAGTCTGATGGATTATTTGAGCTAGTT
1 AAACTTATAACTTATTATCTGCAGTCTGATGGATTATTTGAGCGAGTT
2217148 AAACTTATAACTTATTATCTGCAGTCTGATGGATTATTTGAGCGAGTT
1 AAACTTATAACTTATTATCTGCAGTCTGATGGATTATTTGAGCGAGTT
2217196 A
1 A
2217197 TTCAGATTTT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.40
Consensus pattern (48 bp):
AAACTTATAACTTATTATCTGCAGTCTGATGGATTATTTGAGCGAGTT
Found at i:2222120 original size:21 final size:21
Alignment explanation
Indices: 2222081--2222120 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
2222071 AAGGAAGATT
*
2222081 AATGAAATGATAAAGATAAGG
1 AATGAAATGATAAAAATAAGG
2222102 AATGAAATGA-AATAAATAA
1 AATGAAATGATAA-AAATAA
2222121 AGGATAGAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.62, C:0.00, G:0.17, T:0.20
Consensus pattern (21 bp):
AATGAAATGATAAAAATAAGG
Found at i:2226284 original size:11 final size:11
Alignment explanation
Indices: 2226235--2226290 Score: 53
Period size: 11 Copynumber: 5.2 Consensus size: 11
2226225 CCTTTTGAAT
2226235 TTCTTTTTCTT-
1 TTCTTTTT-TTC
*
2226246 TTCTTTTCTT-
1 TTCTTTTTTTC
2226256 TTCTTTTTTTC
1 TTCTTTTTTTC
**
2226267 TGATTTTTTTC
1 TTCTTTTTTTC
*
2226278 TTCTTTTTGTC
1 TTCTTTTTTTC
2226289 TT
1 TT
2226291 TACTTTTTTG
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
10 11 0.30
11 26 0.70
ACGTcount: A:0.02, C:0.16, G:0.04, T:0.79
Consensus pattern (11 bp):
TTCTTTTTTTC
Found at i:2226640 original size:22 final size:21
Alignment explanation
Indices: 2226614--2226654 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
2226604 GTTGCGGAAT
2226614 TGATGGTGCTGATGGATGAAGA
1 TGATGGTGCTGAT-GATGAAGA
*
2226636 TGATGGTGTTGATGATGAA
1 TGATGGTGCTGATGATGAA
2226655 ATGGAGATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.27, C:0.02, G:0.39, T:0.32
Consensus pattern (21 bp):
TGATGGTGCTGATGATGAAGA
Found at i:2234541 original size:17 final size:17
Alignment explanation
Indices: 2234516--2234560 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
2234506 ACCTATTCAT
*
2234516 AATACAAAATA-ATATAA
1 AATAAAAAATACATAT-A
*
2234533 AATAAAAAATACATGTA
1 AATAAAAAATACATATA
2234550 AATAAAAAATA
1 AATAAAAAATA
2234561 GTATTATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 22 0.88
18 3 0.12
ACGTcount: A:0.71, C:0.04, G:0.02, T:0.22
Consensus pattern (17 bp):
AATAAAAAATACATATA
Found at i:2241293 original size:21 final size:21
Alignment explanation
Indices: 2241269--2241326 Score: 71
Period size: 23 Copynumber: 2.7 Consensus size: 21
2241259 TGTGCACTAG
*
2241269 GTATTGATACCCCTTCAACGT
1 GTATCGATACCCCTTCAACGT
* *
2241290 GTATCGATACCCTCTTTGAATGT
1 GTATCGATACCC-C-TTCAACGT
2241313 GTATCGATACCCCT
1 GTATCGATACCCCT
2241327 ATAAGGGTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
21 12 0.38
22 2 0.06
23 18 0.56
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.34
Consensus pattern (21 bp):
GTATCGATACCCCTTCAACGT
Found at i:2244508 original size:27 final size:27
Alignment explanation
Indices: 2244477--2244529 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
2244467 AAATCAGAAA
*
2244477 TAAATTAGTGACCAAAACATAAAATAC
1 TAAATCAGTGACCAAAACATAAAATAC
* *
2244504 TAAATCAGTGACCTAAATATAAAATA
1 TAAATCAGTGACCAAAACATAAAATA
2244530 TGCATAAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.55, C:0.13, G:0.08, T:0.25
Consensus pattern (27 bp):
TAAATCAGTGACCAAAACATAAAATAC
Found at i:2246442 original size:55 final size:55
Alignment explanation
Indices: 2245907--2246432 Score: 526
Period size: 55 Copynumber: 9.6 Consensus size: 55
2245897 TCTTCAAATG
* * * * * ***
2245907 ACGGGTCTGCTCCCTATTCTTTCAGGGAGTATA-AGACTCAAACAATCTTTGGAAA
1 ACGGGTCCGCTCTCTATTCCTTCAGAGAGTATAGA-ACTCGAACAATCTTCATAAA
* * ** * *
2245962 ATGTGTATGCTCCCTATTCATTCATG-GAGTATA-AGACTCGAACAATCTTCA-ATAA
1 ACGGGTCCGCTCTCTATTCCTTCA-GAGAGTATAGA-ACTCGAACAATCTTCATA-AA
* * * * * *
2246017 ATGGGTCCGCTCCCTA-TCCGTTCAGGGAATGTAGAACTCGAACAATCTTTATAAA
1 ACGGGTCCGCTCTCTATTCC-TTCAGAGAGTATAGAACTCGAACAATCTTCATAAA
* * ** * *
2246072 ATGAGTATGCTCTCTATTCCTTCGGAGAGTATAGAATTCGAACAATCTTCA-ACAA
1 ACGGGTCCGCTCTCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCATA-AA
* * * *
2246127 GCTGGTCCGCTCTCTATTCCTTCAGAGAGTATAGAACTCGAATAATCTTTATAAA
1 ACGGGTCCGCTCTCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCATAAA
* * *
2246182 ACGGGTCCGCTCTCTATTCTTTCACAGGGTATAGAACTCGAACAATCTTCATAAA
1 ACGGGTCCGCTCTCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCATAAA
* **
2246237 ATGGGTCATCTCTCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCATAAA
1 ACGGGTCCGCTCTCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCATAAA
2246292 ACGGGTCCGCTCTCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCATAAA
1 ACGGGTCCGCTCTCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCATAAA
** * * * *
2246347 ATAGGTTCGTTCTCTATTCCTTCAGAGAGTATAAAACTCAAACAATCTTCA-ACAA
1 ACGGGTCCGCTCTCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCATA-AA
** * *
2246402 ACAAGTCCGTTCTCTATTCCTTCAAAGAGTA
1 ACGGGTCCGCTCTCTATTCCTTCAGAGAGTA
2246433 CAGGACTCAA
Statistics
Matches: 401, Mismatches: 60, Indels: 20
0.83 0.12 0.04
Matches are distributed among these distances:
54 6 0.01
55 388 0.97
56 7 0.02
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (55 bp):
ACGGGTCCGCTCTCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCATAAA
Found at i:2246499 original size:37 final size:37
Alignment explanation
Indices: 2246458--2246579 Score: 165
Period size: 37 Copynumber: 3.3 Consensus size: 37
2246448 AACAAAAGAG
*
2246458 TTTGCTTCACTACTCTTCCTTGAAGGCTTATAG-ATGA
1 TTTGCTTCACTACTCTTCCGTGAAGGCTTA-AGTATGA
*
2246495 TTTGCTTCACTACTCTTCCGTGAAGGCTTAAGTTTGA
1 TTTGCTTCACTACTCTTCCGTGAAGGCTTAAGTATGA
* * *
2246532 ATTGCTTCACTACTATTCCGTGAAGGCTTAAGTTTGA
1 TTTGCTTCACTACTCTTCCGTGAAGGCTTAAGTATGA
* *
2246569 ATTACTTCACT
1 TTTGCTTCACT
2246580 GTTTTTTCGT
Statistics
Matches: 79, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
36 2 0.03
37 77 0.97
ACGTcount: A:0.22, C:0.21, G:0.16, T:0.40
Consensus pattern (37 bp):
TTTGCTTCACTACTCTTCCGTGAAGGCTTAAGTATGA
Found at i:2247908 original size:9 final size:9
Alignment explanation
Indices: 2247896--2247955 Score: 59
Period size: 9 Copynumber: 6.3 Consensus size: 9
2247886 TATTTTTCTC
2247896 TTTTTCA-T
1 TTTTTCATT
2247904 TTTTTCATTAT
1 TTTTTCA-T-T
2247915 TTTTTCATT
1 TTTTTCATT
*
2247924 ATTTTCATT
1 TTTTTCATT
2247933 ATTCTTTCATT
1 -TT-TTTCATT
*
2247944 ATTTTCATT
1 TTTTTCATT
2247953 TTT
1 TTT
2247956 ATCTTTTTAT
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
8 7 0.16
9 18 0.42
10 3 0.07
11 15 0.35
ACGTcount: A:0.17, C:0.12, G:0.00, T:0.72
Consensus pattern (9 bp):
TTTTTCATT
Found at i:2247918 original size:11 final size:11
Alignment explanation
Indices: 2247902--2247948 Score: 71
Period size: 11 Copynumber: 4.5 Consensus size: 11
2247892 TCTCTTTTTC
2247902 ATTTTTTCATT
1 ATTTTTTCATT
2247913 ATTTTTTCATT
1 ATTTTTTCATT
2247924 A--TTTTCATT
1 ATTTTTTCATT
*
2247933 ATTCTTTCATT
1 ATTTTTTCATT
2247944 ATTTT
1 ATTTT
2247949 CATTTTTATC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
9 9 0.28
11 23 0.72
ACGTcount: A:0.19, C:0.11, G:0.00, T:0.70
Consensus pattern (11 bp):
ATTTTTTCATT
Found at i:2247919 original size:20 final size:20
Alignment explanation
Indices: 2247896--2247952 Score: 98
Period size: 20 Copynumber: 2.9 Consensus size: 20
2247886 TATTTTTCTC
2247896 TTTTTCATT-TTTTCATTAT
1 TTTTTCATTATTTTCATTAT
2247915 TTTTTCATTATTTTCATTAT
1 TTTTTCATTATTTTCATTAT
*
2247935 TCTTTCATTATTTTCATT
1 TTTTTCATTATTTTCATT
2247953 TTTATCTTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
19 9 0.25
20 27 0.75
ACGTcount: A:0.18, C:0.12, G:0.00, T:0.70
Consensus pattern (20 bp):
TTTTTCATTATTTTCATTAT
Found at i:2257565 original size:45 final size:47
Alignment explanation
Indices: 2257498--2257604 Score: 164
Period size: 45 Copynumber: 2.3 Consensus size: 47
2257488 CCATGCTTTG
*
2257498 TTATTCACAAAAACAAATCCTAACCGCATGATATCTAATTCGCATGC-
1 TTATTCA-AAAAATAAATCCTAACCGCATGATATCTAATTCGCATGCA
*
2257545 TTATTCAAAAAATAAA-CCTAACCGCATGATATCTAGTTCGCATGCA
1 TTATTCAAAAAATAAATCCTAACCGCATGATATCTAATTCGCATGCA
2257591 TTTATTCAAAAAAT
1 -TTATTCAAAAAAT
2257605 GAAAATAAAT
Statistics
Matches: 56, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
45 28 0.50
46 8 0.14
47 20 0.36
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (47 bp):
TTATTCAAAAAATAAATCCTAACCGCATGATATCTAATTCGCATGCA
Found at i:2260167 original size:27 final size:27
Alignment explanation
Indices: 2260135--2260187 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
2260125 AAATCAGAAA
2260135 TAAATCAGTGACC-AAACCATAAAATAC
1 TAAATCAGTGACCTAAA-CATAAAATAC
*
2260162 TAAATCAGTGACCTAAATATAAAATA
1 TAAATCAGTGACCTAAACATAAAATA
2260188 TGCATAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 21 0.88
28 3 0.12
ACGTcount: A:0.53, C:0.17, G:0.08, T:0.23
Consensus pattern (27 bp):
TAAATCAGTGACCTAAACATAAAATAC
Found at i:2266100 original size:17 final size:16
Alignment explanation
Indices: 2266069--2266107 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
2266059 GAATCCAACC
2266069 ATATTATTATAAATAA
1 ATATTATTATAAATAA
*
2266085 ATATTGTTATTAAATAA
1 ATATTATTA-TAAATAA
2266102 AT-TTAT
1 ATATTAT
2266108 ATATTTACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 11 0.55
17 9 0.45
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (16 bp):
ATATTATTATAAATAA
Found at i:2266112 original size:17 final size:17
Alignment explanation
Indices: 2266069--2266112 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
2266059 GAATCCAACC
2266069 ATATTATTA-TAAATAA
1 ATATTATTATTAAATAA
*
2266085 ATATTGTTATTAAATAA
1 ATATTATTATTAAATAA
2266102 AT-TTATATATT
1 ATATTAT-TATT
2266113 TACAAACTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 11 0.46
17 13 0.54
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (17 bp):
ATATTATTATTAAATAA
Found at i:2272552 original size:15 final size:15
Alignment explanation
Indices: 2272500--2272559 Score: 68
Period size: 15 Copynumber: 4.0 Consensus size: 15
2272490 GTACATACCT
*
2272500 TCATTATCACCACCA
1 TCATCATCACCACCA
* *
2272515 TGATCATCACTACCA
1 TCATCATCACCACCA
*
2272530 -CATCCATCACCATCA
1 TCAT-CATCACCACCA
2272545 TCATCATCACCACCA
1 TCATCATCACCACCA
2272560 CTTTACGTCG
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
14 2 0.06
15 31 0.86
16 3 0.08
ACGTcount: A:0.33, C:0.42, G:0.02, T:0.23
Consensus pattern (15 bp):
TCATCATCACCACCA
Found at i:2276939 original size:2 final size:2
Alignment explanation
Indices: 2276927--2276982 Score: 80
Period size: 2 Copynumber: 29.0 Consensus size: 2
2276917 TTGTGCATTG
* *
2276927 TA TA TA AA TA TA TA TA -A TA TA TA TA TA TC TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2276968 TA T- TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA
2276983 AATAGGTTAT
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
1 2 0.04
2 46 0.96
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:2276967 original size:27 final size:27
Alignment explanation
Indices: 2276929--2276981 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
2276919 GTGCATTGTA
2276929 TATAAATATATATAATATATATATATC
1 TATAAATATATATAATATATATATATC
* *
2276956 TATATATATATATATTATATATATAT
1 TATAAATATATATAATATATATATAT
2276982 AAATAGGTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (27 bp):
TATAAATATATATAATATATATATATC
Found at i:2276969 original size:29 final size:29
Alignment explanation
Indices: 2276927--2276982 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
2276917 TTGTGCATTG
2276927 TATATAAATATATATAATATATATATATC
1 TATATAAATATATATAATATATATATATC
* *
2276956 TATATATATATATATTATATATATATA
1 TATATAAATATATATAATATATATATA
2276983 AATAGGTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (29 bp):
TATATAAATATATATAATATATATATATC
Found at i:2284742 original size:16 final size:17
Alignment explanation
Indices: 2284708--2284746 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
2284698 TTTGTAAATA
2284708 AATAA-ATTTATTTAAT
1 AATAATATTTATTTAAT
*
2284724 AATAATATTTATTT-GT
1 AATAATATTTATTTAAT
2284740 AATAATA
1 AATAATA
2284747 AGAATAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 13 0.62
17 8 0.38
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (17 bp):
AATAATATTTATTTAAT
Found at i:2288374 original size:39 final size:39
Alignment explanation
Indices: 2288320--2288397 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
2288310 CATGTGCGGT
2288320 TCACAATGCATGTAATTTCCATGTTACGCTCCATGATTG
1 TCACAATGCATGTAATTTCCATGTTACGCTCCATGATTG
2288359 TCACAATGCATGTAATTTCCATGTTACGCTCCATGATTG
1 TCACAATGCATGTAATTTCCATGTTACGCTCCATGATTG
2288398 ATCTATGTCA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (39 bp):
TCACAATGCATGTAATTTCCATGTTACGCTCCATGATTG
Found at i:2291599 original size:16 final size:16
Alignment explanation
Indices: 2291580--2291610 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
2291570 ACCCTAAACG
2291580 TTTTTCCCTTTTTTCT
1 TTTTTCCCTTTTTTCT
*
2291596 TTTTTCCTTTTTTTC
1 TTTTTCCCTTTTTTC
2291611 GACTTAGGTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTTTCCCTTTTTTCT
Found at i:2306056 original size:5 final size:5
Alignment explanation
Indices: 2306046--2306081 Score: 63
Period size: 5 Copynumber: 7.2 Consensus size: 5
2306036 TCTTTTGCAC
*
2306046 TTTTA TTTTA TTTTG TTTTA TTTTA TTTTA TTTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA T
2306082 CTTTGCAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:2307291 original size:15 final size:17
Alignment explanation
Indices: 2307271--2307302 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
2307261 TTCTTGAAAT
2307271 AAATCAT-T-TGGGTAG
1 AAATCATGTCTGGGTAG
2307286 AAATCATGTCTGGGTAG
1 AAATCATGTCTGGGTAG
2307303 GATTACTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.31, C:0.09, G:0.28, T:0.31
Consensus pattern (17 bp):
AAATCATGTCTGGGTAG
Found at i:2311305 original size:134 final size:131
Alignment explanation
Indices: 2311031--2311335 Score: 346
Period size: 134 Copynumber: 2.3 Consensus size: 131
2311021 CGTATAAGTC
* ** *
2311031 ATGTCATCTC-CCGACCAGACCTCCTCATCACATAGGAGTCGTGTCACCCCTCAGATAACCAGAC
1 ATGTCATC-CACCGACCA-ACCTCCTCATCACGTAGGAACCATGTCACCCCTCAGATAACCAGAC
* * *
2311095 GTCCTCATCACGTAGAAACTGTGTTATCATCCCTAAAGATGGTCTATCATCCTCATCACGTAGGA
64 ATCCTCATCACGTAGAAACTGCGTTATCATCCCTAAAGATGGACTATCATCCTCATCACGTAGGA
2311160 ACG
129 ACG
* * *
2311163 GTGTCATCCACCGACCATACCTCCTCATCACGTAGGAACCATGTCACCCCT-AGATAATCAGTCA
1 ATGTCATCCACCGACCA-ACCTCCTCATCACGTAGGAACCATGTCACCCCTCAGATAACCAGACA
* * * * * *
2311227 TCCTCATCGCGTAGGAACTGCGTTATCACCCTTCCTAAAGAT-GACATGTCGTCCTCATCACGTT
65 TCCTCATCACGTAGAAACTGCGTTATCA---TCCCTAAAGATGGAC-TATCATCCTCATCACGTA
*
2311291 GGAACT
126 GGAACG
*
2311297 ATGTCATCCACCGACCAAGTCGTCCTCATCACGTAGGAA
1 ATGTCATCCACCGACCAA--CCTCCTCATCACGTAGGAA
2311336 TAATGTCATC
Statistics
Matches: 146, Mismatches: 20, Indels: 11
0.82 0.11 0.06
Matches are distributed among these distances:
131 36 0.25
132 43 0.29
133 3 0.02
134 46 0.32
135 18 0.12
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (131 bp):
ATGTCATCCACCGACCAACCTCCTCATCACGTAGGAACCATGTCACCCCTCAGATAACCAGACAT
CCTCATCACGTAGAAACTGCGTTATCATCCCTAAAGATGGACTATCATCCTCATCACGTAGGAAC
G
Found at i:2311342 original size:41 final size:41
Alignment explanation
Indices: 2311274--2311354 Score: 137
Period size: 41 Copynumber: 2.0 Consensus size: 41
2311264 AAGATGACAT
*
2311274 GTCGTCCTCATCACGTTGGAACTATGTCATCCACCGACCAA
1 GTCGTCCTCATCACGTAGGAACTATGTCATCCACCGACCAA
2311315 GTCGTCCTCATCACGTAGGAA-TAATGTCATCCACCGACCA
1 GTCGTCCTCATCACGTAGGAACT-ATGTCATCCACCGACCA
2311355 GATATCATCA
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
40 1 0.03
41 37 0.97
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.23
Consensus pattern (41 bp):
GTCGTCCTCATCACGTAGGAACTATGTCATCCACCGACCAA
Found at i:2311345 original size:175 final size:176
Alignment explanation
Indices: 2311139--2311519 Score: 439
Period size: 175 Copynumber: 2.2 Consensus size: 176
2311129 AAAGATGGTC
** * * *
2311139 TATCATCCTCATCACGTAGGAACGGTGTCATCCACCGACCATACCTCCTCATCACGTAGGAACCA
1 TATC-TCCTCATCACGTAGGAACAATGTCATCCACCGACCAGACATCATCATCACGTAGGAACCA
* * *
2311204 TGTCACCCCTAGATAATCAGTCATCCTCATCGCGTAGGAA-CTGCGTTATCACCCT-T-CCTAAA
65 TGTCACCCCTAGATAACCAATCATCCTCATCGCGTAGGAATC-GCGTTATCACCATATCCCTAAA
* * * * *
2311266 GATGA-CATGTCGTCCTCATCACGTTGGAACTATGTCATCCACCGACCA
129 GATAACCA-GTCATCCTCATCACGTAGGAACCATGTCATCCACCAACCA
* * * *
2311314 -AGTCGTCCTCATCACGTAGGAATAATGTCATCCACCGACCAGATATCATCATCATGTAGGAGCC
1 TA-TC-TCCTCATCACGTAGGAACAATGTCATCCACCGACCAGACATCATCATCACGTAGGAACC
* * * * *
2311378 GTGTCACCCCTAGATAACCAATTATCCTCATCGTGTAGGAATCGTGTTATCACTATATCCCTAAA
64 ATGTCACCCCTAGATAACCAATCATCCTCATCGCGTAGGAATCGCGTTATCACCATATCCCTAAA
* *
2311443 GATAACCAGTCATCCTCATCACGTAGGAACCGTGTCATCCACTAACCA
129 GATAACCAGTCATCCTCATCACGTAGGAACCATGTCATCCACCAACCA
* * *
2311491 TATCTCATCATCACGTAGGAGCCATGTCA
1 TATCTCCTCATCACGTAGGAACAATGTCA
2311520 CCCCTAGATA
Statistics
Matches: 171, Mismatches: 29, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
174 1 0.01
175 98 0.57
176 23 0.13
177 46 0.27
178 3 0.02
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (176 bp):
TATCTCCTCATCACGTAGGAACAATGTCATCCACCGACCAGACATCATCATCACGTAGGAACCAT
GTCACCCCTAGATAACCAATCATCCTCATCGCGTAGGAATCGCGTTATCACCATATCCCTAAAGA
TAACCAGTCATCCTCATCACGTAGGAACCATGTCATCCACCAACCA
Found at i:2311470 original size:136 final size:134
Alignment explanation
Indices: 2311314--2311656 Score: 400
Period size: 136 Copynumber: 2.5 Consensus size: 134
2311304 CCACCGACCA
* ** * *
2311314 AGTCGTCCTCATCACGTAGGAATAATGTCATCCACCGACCAGATATCATCATCATGTAGGAGCCG
1 AGTCATCCTCATCACGTAGGAATCGTGTCATCCACCGACCATATATCATCATCACGTAGGAGCCG
** ** * *
2311379 TGTCACCCCTAGATAACCAATTATCCTCATCGTGTAGGAATCGTGTTATCACTATATCCCTAAAG
66 TGTCACCCCTAGATAACCAACCATCCTCATCACGTAGGAACCGTGTTATCACCAT-T-CCTAAAG
2311444 ATAACC
129 ATAACC
* ** * *
2311450 AGTCATCCTCATCACGTAGGAACCGTGTCATCCACTAACCATATCTCATCATCACGTAGGAGCCA
1 AGTCATCCTCATCACGTAGGAATCGTGTCATCCACCGACCATATATCATCATCACGTAGGAGCCG
* * *
2311515 TGTCACCCCTAGATAACCAACCGTCCTCATCACGTAGGAACCGTGTTATCGCCCTTCCTAAAGAT
66 TGTCACCCCTAGATAACCAACCATCCTCATCACGTAGGAACCGTGTTATCACCATTCCTAAAGAT
** *
2311580 GGCT
131 AACC
* * * * * *
2311584 AG-AACTCTTCATCACGTATGAGTCGTATCATCCACCGACCATATATCCTCATCACGTAGGAGCC
1 AGTCA-TCCTCATCACGTAGGAATCGTGTCATCCACCGACCATATATCATCATCACGTAGGAGCC
2311648 GTGTCACCC
65 GTGTCACCC
2311657 TTAAACGACC
Statistics
Matches: 173, Mismatches: 33, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
133 1 0.01
134 70 0.40
135 1 0.01
136 101 0.58
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (134 bp):
AGTCATCCTCATCACGTAGGAATCGTGTCATCCACCGACCATATATCATCATCACGTAGGAGCCG
TGTCACCCCTAGATAACCAACCATCCTCATCACGTAGGAACCGTGTTATCACCATTCCTAAAGAT
AACC
Found at i:2311502 original size:40 final size:43
Alignment explanation
Indices: 2311458--2311560 Score: 115
Period size: 43 Copynumber: 2.5 Consensus size: 43
2311448 CCAGTCATCC
* * *
2311458 TCATCACGTAGGAACCGTGTCA-TCC-A-CTAACCATATC-TCA
1 TCATCACGTAGGAACCGTGTCACCCCTAGATAACCA-ACCGTCA
* * *
2311498 TCATCACGTAGGAGCCATGTCACCCCTAGATAACCAACCGTCC
1 TCATCACGTAGGAACCGTGTCACCCCTAGATAACCAACCGTCA
2311541 TCATCACGTAGGAACCGTGT
1 TCATCACGTAGGAACCGTGT
2311561 TATCGCCCTT
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
40 20 0.39
41 2 0.04
42 3 0.06
43 26 0.51
ACGTcount: A:0.28, C:0.33, G:0.17, T:0.22
Consensus pattern (43 bp):
TCATCACGTAGGAACCGTGTCACCCCTAGATAACCAACCGTCA
Found at i:2313641 original size:33 final size:35
Alignment explanation
Indices: 2313584--2313660 Score: 97
Period size: 34 Copynumber: 2.3 Consensus size: 35
2313574 CTTTTACTTT
2313584 ATTTTATTTATTTTTCAGCACTTTAA-ATTACAGC
1 ATTTTATTTATTTTTCAGCACTTTAACATTACAGC
* * *
2313618 ATTTTATTT-TTTTT-ATGCCCTTTAACTTTTCAGC
1 ATTTTATTTATTTTTCA-GCACTTTAACATTACAGC
2313652 ATTTTATTT
1 ATTTTATTT
2313661 CAATCCTTTC
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
32 1 0.03
33 13 0.34
34 24 0.63
ACGTcount: A:0.23, C:0.14, G:0.05, T:0.57
Consensus pattern (35 bp):
ATTTTATTTATTTTTCAGCACTTTAACATTACAGC
Found at i:2314104 original size:5 final size:5
Alignment explanation
Indices: 2314094--2314129 Score: 63
Period size: 5 Copynumber: 7.2 Consensus size: 5
2314084 TCTTTTGCAC
*
2314094 TTTTA TTTTA TTTTG TTTTA TTTTA TTTTA TTTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA T
2314130 CTTTGCAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:2319393 original size:12 final size:12
Alignment explanation
Indices: 2319362--2319411 Score: 59
Period size: 12 Copynumber: 4.2 Consensus size: 12
2319352 TTGATATTTT
2319362 TAAATAATAATTA
1 TAAAT-ATAATTA
*
2319375 -AAA-ATAAATA
1 TAAATATAATTA
2319385 TAAATATAATTA
1 TAAATATAATTA
*
2319397 TAATTATAATTA
1 TAAATATAATTA
2319409 TAA
1 TAA
2319412 TTTTAGGGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
10 6 0.19
11 3 0.09
12 23 0.72
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
TAAATATAATTA
Found at i:2319412 original size:6 final size:6
Alignment explanation
Indices: 2319378--2319413 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
2319368 ATAATTAAAA
* *
2319378 ATAAAT ATAAAT ATAATT ATAATT ATAATT ATAATT
1 ATAATT ATAATT ATAATT ATAATT ATAATT ATAATT
2319414 TTAGGGAAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (6 bp):
ATAATT
Found at i:2322792 original size:11 final size:11
Alignment explanation
Indices: 2322778--2322808 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
2322768 AAATATTAAA
2322778 AAAATGAAATT
1 AAAATGAAATT
2322789 AAAATGAAATT
1 AAAATGAAATT
2322800 AAAAT-AAAT
1 AAAATGAAAT
2322809 AAATAAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.20
11 16 0.80
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (11 bp):
AAAATGAAATT
Found at i:2322822 original size:9 final size:9
Alignment explanation
Indices: 2322802--2322833 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
2322792 ATGAAATTAA
2322802 AATAAATA-
1 AATAAATAT
2322810 AATAAATAT
1 AATAAATAT
2322819 AATAAATAT
1 AATAAATAT
2322828 AATAAA
1 AATAAA
2322834 AAAAGGAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 8 0.35
9 15 0.65
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (9 bp):
AATAAATAT
Found at i:2322846 original size:21 final size:22
Alignment explanation
Indices: 2322819--2322879 Score: 72
Period size: 22 Copynumber: 2.8 Consensus size: 22
2322809 AAATAAATAT
2322819 AATAAATATAATAAAAAAAGGA
1 AATAAATATAATAAAAAAAGGA
* **
2322841 AA-AAATAATAATAAAAATATTA
1 AATAAAT-ATAATAAAAAAAGGA
2322863 AATAAA-ATAATAAAAAA
1 AATAAATATAATAAAAAA
2322880 TATATATAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
21 14 0.42
22 16 0.48
23 3 0.09
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.21
Consensus pattern (22 bp):
AATAAATATAATAAAAAAAGGA
Found at i:2322847 original size:34 final size:34
Alignment explanation
Indices: 2322800--2322888 Score: 85
Period size: 34 Copynumber: 2.6 Consensus size: 34
2322790 AAATGAAATT
*
2322800 AAAATAAATAAATAAATATAATAAATA-T-AATAAA
1 AAAAGAAA-AAATAAATATAA-AAATATTAAATAAA
2322834 AAAAGGAAAAAAT-AATAATAAAAATATTAAATAAA
1 AAAA-GAAAAAATAAAT-ATAAAAATATTAAATAAA
* * *
2322869 ATAATAAAAAATATATATAA
1 AAAAGAAAAAATAAATATAA
2322889 GTTAAGATAA
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
33 8 0.17
34 24 0.52
35 14 0.30
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (34 bp):
AAAAGAAAAAATAAATATAAAAATATTAAATAAA
Found at i:2322865 original size:40 final size:43
Alignment explanation
Indices: 2322800--2322878 Score: 110
Period size: 40 Copynumber: 1.9 Consensus size: 43
2322790 AAATGAAATT
* *
2322800 AAAATAAATAAATAAATATAATAAATATAATAA-AAAAAGGAA
1 AAAATAAATAAATAAAAATAATAAATAAAATAATAAAAAGGAA
*
2322842 AAAAT-AAT-AATAAAAATATTAAATAAAATAATAAAAA
1 AAAATAAATAAATAAAAATAATAAATAAAATAATAAAAA
2322879 ATATATATAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
40 20 0.61
41 8 0.24
42 5 0.15
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.23
Consensus pattern (43 bp):
AAAATAAATAAATAAAAATAATAAATAAAATAATAAAAAGGAA
Found at i:2322939 original size:2 final size:2
Alignment explanation
Indices: 2322932--2322961 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
2322922 ATAATAGTAA
2322932 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2322962 GAGGGGAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2323529 original size:100 final size:101
Alignment explanation
Indices: 2323407--2323609 Score: 399
Period size: 100 Copynumber: 2.0 Consensus size: 101
2323397 CCCGATACCA
2323407 GATCCGGAGCCCGTTTCCCCTAAAGATAACCCAATCGACGTAGATCTAAGCCGAGATCTTCGGCT
1 GATCCGGAGCCCGTTTCCCCTAAAGATAACCCAATCGACGTAGATCTAAGCCGAGATCTTCGGCT
2323472 TCCTTACCTTTTGCGATGGCTTCTCAC-TTCCCGAC
66 TCCTTACCTTTTGCGATGGCTTCTCACTTTCCCGAC
2323507 GATCCGGAGCCCGTTTCCCCTAAAGATAACCCAATCGACGTAGATCTAAGCCGAGATCTTCGGCT
1 GATCCGGAGCCCGTTTCCCCTAAAGATAACCCAATCGACGTAGATCTAAGCCGAGATCTTCGGCT
2323572 TCCTTACCTTTTGCGATGGCTTCTCACTTTCCCGAC
66 TCCTTACCTTTTGCGATGGCTTCTCACTTTCCCGAC
2323608 GA
1 GA
2323610 GCCTCCTTCG
Statistics
Matches: 102, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
100 92 0.90
101 10 0.10
ACGTcount: A:0.21, C:0.33, G:0.19, T:0.27
Consensus pattern (101 bp):
GATCCGGAGCCCGTTTCCCCTAAAGATAACCCAATCGACGTAGATCTAAGCCGAGATCTTCGGCT
TCCTTACCTTTTGCGATGGCTTCTCACTTTCCCGAC
Found at i:2324239 original size:20 final size:20
Alignment explanation
Indices: 2324214--2324280 Score: 68
Period size: 20 Copynumber: 3.4 Consensus size: 20
2324204 AAAAAAGATA
2324214 AATAATAATAAGTAATAAAT
1 AATAATAATAAGTAATAAAT
** *
2324234 AATAATAA-AAAAAAGAAAAT
1 AATAATAATAAGTAA-TAAAT
2324254 AATAATAAT-AGTAAATAAAT
1 AATAATAATAAGT-AATAAAT
2324274 -ATAATAA
1 AATAATAA
2324281 AAAACATTTT
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
19 11 0.29
20 25 0.66
21 2 0.05
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.25
Consensus pattern (20 bp):
AATAATAATAAGTAATAAAT
Found at i:2324254 original size:37 final size:40
Alignment explanation
Indices: 2324204--2324284 Score: 125
Period size: 39 Copynumber: 2.1 Consensus size: 40
2324194 ACAAAACGAG
2324204 AAAAAAGATAAATAATAAT-A-AGT-AATAAATAATAATAA
1 AAAAAAGATAAATAATAATAATAGTAAATAAAT-ATAATAA
2324242 AAAAAAGA-AAATAATAATAATAGTAAATAAATATAATAA
1 AAAAAAGATAAATAATAATAATAGTAAATAAATATAATAA
2324281 AAAA
1 AAAA
2324285 CATTTTTAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
37 10 0.25
38 9 0.22
39 14 0.35
40 7 0.17
ACGTcount: A:0.73, C:0.00, G:0.05, T:0.22
Consensus pattern (40 bp):
AAAAAAGATAAATAATAATAATAGTAAATAAATATAATAA
Found at i:2324370 original size:37 final size:37
Alignment explanation
Indices: 2324280--2324418 Score: 118
Period size: 32 Copynumber: 3.9 Consensus size: 37
2324270 AAATATAATA
*
2324280 AAAAACATTTTTAAAAC-TATATA-ATATATGTGTTT--
1 AAAAACA-TTTTAAAACTTATATATATATATAT-TTTAC
2324315 --AAA-ATTTTCAAAAC-TATATA-ATATATATTTT-C
1 AAAAACATTTT-AAAACTTATATATATATATATTTTAC
*
2324347 AAAAATTATTTTAAAAACTTATATATTATATATATTTTAC
1 AAAAA-CATTTT-AAAACTTATATA-TATATATATTTTAC
* *
2324387 AAAAACGTTTTAAAATTTATATATATATATAT
1 AAAAACATTTTAAAACTTATATATATATATAT
2324419 ATATATATAT
Statistics
Matches: 89, Mismatches: 5, Indels: 18
0.79 0.04 0.16
Matches are distributed among these distances:
31 7 0.08
32 19 0.21
33 3 0.03
34 3 0.03
36 10 0.11
37 15 0.17
38 11 0.12
39 15 0.17
40 6 0.07
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.45
Consensus pattern (37 bp):
AAAAACATTTTAAAACTTATATATATATATATTTTAC
Found at i:2324411 original size:2 final size:2
Alignment explanation
Indices: 2324404--2324428 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
2324394 TTTTAAAATT
2324404 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
2324429 GTTTTTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2324448 original size:86 final size:84
Alignment explanation
Indices: 2324329--2324512 Score: 223
Period size: 84 Copynumber: 2.2 Consensus size: 84
2324319 TTTTCAAAAC
*
2324329 TATATA-ATATATATTTTCAAAAATTATTTTAAAAACTTATATATTATATATAT-TTTACAAAAA
1 TATATATATATATATTTTCAAAAATTATTTTAAAAAC-TATATAATATATATATGTTT-C--AAA
**
2324392 CGTTTTAAAATTTAT-ATATATA
62 CGTTTTAAAAACTATAATATATA
** * * *
2324414 TATATATATATATATGTTTTTAAAA-TGTTTTAAAATCTATATAATATATATATGTTTCAAATGT
1 TATATATATATATAT-TTTCAAAAATTATTTTAAAAACTATATAATATATATATGTTTCAAACGT
2324478 TTTAAAAACTATAATATATA
65 TTTAAAAACTATAATATATA
2324498 TATATATATATATAT
1 TATATATATATATAT
2324513 ATATATATAT
Statistics
Matches: 87, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
83 15 0.17
84 22 0.25
85 22 0.25
86 21 0.24
87 7 0.08
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.48
Consensus pattern (84 bp):
TATATATATATATATTTTCAAAAATTATTTTAAAAACTATATAATATATATATGTTTCAAACGTT
TTAAAAACTATAATATATA
Found at i:2324470 original size:38 final size:38
Alignment explanation
Indices: 2324412--2324762 Score: 307
Period size: 37 Copynumber: 9.5 Consensus size: 38
2324402 TTTATATATA
* *
2324412 TATATATATATATATATGTTTTTAAAATGTTTTAAAATC
1 TATATA-ATATATATATATTTTTAAAATGTTTTAAAAAC
* *
2324451 TATAT-A-ATATATATATGTTTCAAATGTTTTAAAAAC
1 TATATAATATATATATATTTTTAAAATGTTTTAAAAAC
* * * * * * *
2324487 --TATAATATATATATATATAT-ATAT-ATATATATA-
1 TATATAATATATATATATTTTTAAAATGTTTTAAAAAC
* * *
2324520 TATAT-ATATATATATATATATATAATGTTTTAAAAAC
1 TATATAATATATATATATTTTTAAAATGTTTTAAAAAC
* *
2324557 TATATGATATATATATGTTTTTAAAAATGTTTTAAAAAC
1 TATATAATATATATATATTTTT-AAAATGTTTTAAAAAC
* *
2324596 TATAT-AT-TTTATATATTTTCAAAATGTTTTTAAAAAC
1 TATATAATATATATATATTTTTAAAATG-TTTTAAAAAC
* * *
2324633 TGTAT-AT-TATACATATTTTCAAAATGTTTTAAAAAC
1 TATATAATATATATATATTTTTAAAATGTTTTAAAAAC
* * *
2324669 TATATAATATATATATGTTTTCAAAAATATTTTAAAAAC
1 TATATAATATATATATATTTT-TAAAATGTTTTAAAAAC
* * *
2324708 T-TAT-ATATCATATATATTTTCAAAATGTTTTCAAAAT
1 TATATAATAT-ATATATATTTTTAAAATGTTTTAAAAAC
*
2324745 TATATAATATATAAATAT
1 TATATAATATATATATAT
2324763 ATATATTATA
Statistics
Matches: 258, Mismatches: 38, Indels: 33
0.78 0.12 0.10
Matches are distributed among these distances:
34 24 0.09
35 9 0.03
36 63 0.24
37 69 0.27
38 48 0.19
39 45 0.17
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (38 bp):
TATATAATATATATATATTTTTAAAATGTTTTAAAAAC
Found at i:2324498 original size:2 final size:2
Alignment explanation
Indices: 2324487--2324543 Score: 107
Period size: 2 Copynumber: 29.0 Consensus size: 2
2324477 TTTTAAAAAC
2324487 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2324528 TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA
2324544 ATGTTTTAAA
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 53 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:2324513 original size:86 final size:85
Alignment explanation
Indices: 2324329--2324514 Score: 220
Period size: 86 Copynumber: 2.2 Consensus size: 85
2324319 TTTTCAAAAC
*
2324329 TATATA-ATATATATTTTCAAAAATTATTTTAAAAACTTATATATTATATATATTTTACAAAAAC
1 TATATATATATATATTTTCAAAAATTATTTTAAAAACTTATATAATATATATATTTTAC-AAAAC
*
2324393 GTTTTAAAATTTATATATATA
65 GTTTTAAAATTAATATATATA
** * *
2324414 TATATATATATATATGTTTTTAAAA-TGTTTTAAAATC-TATATAATATATATATGTTT-C-AAA
1 TATATATATATATAT-TTTCAAAAATTATTTTAAAAACTTATATAATATATATAT-TTTACAAAA
*
2324475 TGTTTTAAAAACTATAATATATATA
64 CGTTTT-AAAA-T-TAATATATATA
2324500 TATATATATATATAT
1 TATATATATATATAT
2324515 ATATATATAT
Statistics
Matches: 88, Mismatches: 7, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
83 8 0.09
84 4 0.05
85 23 0.26
86 46 0.52
87 7 0.08
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.48
Consensus pattern (85 bp):
TATATATATATATATTTTCAAAAATTATTTTAAAAACTTATATAATATATATATTTTACAAAACG
TTTTAAAATTAATATATATA
Found at i:2324566 original size:28 final size:27
Alignment explanation
Indices: 2324504--2324583 Score: 83
Period size: 26 Copynumber: 3.0 Consensus size: 27
2324494 TATATATATA
* * * * *
2324504 TATATATATATATATATATATATATA-
1 TATATATATATATATGTTTTTAAAAAC
2324530 TATATATATATATAATG-TTTTAAAAAC
1 TATATATATATAT-ATGTTTTTAAAAAC
2324557 TATATGATATATATATGTTTTTAAAAA
1 TATAT-ATATATATATGTTTTTAAAAA
2324584 TGTTTTAAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 18 0.40
27 10 0.22
28 17 0.38
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.47
Consensus pattern (27 bp):
TATATATATATATATGTTTTTAAAAAC
Found at i:2324574 original size:27 final size:28
Alignment explanation
Indices: 2324530--2324583 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
2324520 TATATATATA
2324530 TATATATATATATAATG-TTTTAAAAAC
1 TATATATATATATAATGTTTTTAAAAAC
2324557 TATATGATATATAT-ATGTTTTTAAAAA
1 TATAT-ATATATATAATGTTTTTAAAAA
2324584 TGTTTTAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
27 8 0.32
28 17 0.68
ACGTcount: A:0.46, C:0.02, G:0.06, T:0.46
Consensus pattern (28 bp):
TATATATATATATAATGTTTTTAAAAAC
Found at i:2324627 original size:37 final size:36
Alignment explanation
Indices: 2324414--2324757 Score: 306
Period size: 36 Copynumber: 9.4 Consensus size: 36
2324404 TATATATATA
* * *
2324414 TATATATATATATATGTTTTTAAAATGTTTTAAAATC
1 TATATAT-TATATATATTTTCAAAATGTTTTAAAAAC
*
2324451 TATATAATATATATATGTTTC-AAATGTTTTAAAAAC
1 TATATATTATATATAT-TTTCAAAATGTTTTAAAAAC
* * * * * *
2324487 TATA-A-TATATATATATAT-ATATAT-ATATATATA-
1 TATATATTATATATAT-TTTCA-AAATGTTTTAAAAAC
* *
2324520 TATATATATATATATATATAT-ATAATGTTTTAAAAAC
1 TATATAT-TATATATAT-TTTCAAAATGTTTTAAAAAC
* *
2324557 TATATGATATATATATGTTTTTAAAAATGTTTTAAAAAC
1 TATAT-AT-TATATAT-ATTTTCAAAATGTTTTAAAAAC
*
2324596 TATATATTTTATATATTTTCAAAATGTTTTTAAAAAC
1 TATATATTATATATATTTTCAAAATG-TTTTAAAAAC
* *
2324633 TGTATATTATACATATTTTCAAAATGTTTTAAAAAC
1 TATATATTATATATATTTTCAAAATGTTTTAAAAAC
* *
2324669 TATATAATATATATATGTTTTCAAAAATATTTTAAAAAC
1 TATAT-AT-TATATATATTTTC-AAAATGTTTTAAAAAC
* * *
2324708 TTATATATCATATATATTTTCAAAATGTTTTCAAAAT
1 -TATATATTATATATATTTTCAAAATGTTTTAAAAAC
*
2324745 TATATAATATATA
1 TATATATTATATA
2324758 AATATATATA
Statistics
Matches: 254, Mismatches: 37, Indels: 33
0.78 0.11 0.10
Matches are distributed among these distances:
33 4 0.02
34 17 0.07
35 6 0.02
36 80 0.31
37 68 0.27
38 36 0.14
39 38 0.15
40 5 0.02
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (36 bp):
TATATATTATATATATTTTCAAAATGTTTTAAAAAC
Found at i:2325470 original size:161 final size:162
Alignment explanation
Indices: 2325186--2325589 Score: 476
Period size: 161 Copynumber: 2.5 Consensus size: 162
2325176 AATTTATTGA
* * * * * * * *
2325186 CAGATAGCCTTTCTTTCCTTGAGCTATGTTGTAAATGATGTGCCTTCGGGTTGAGTGGAATCGAA
1 CAGATAACCCTTCTATCCTTGAGTTATGCT-TAAATGATGTGCCTTCGAGCTGAGTGTAATCGAA
* * *
2325251 CTCGAAGGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGGTGCCTTTGA
65 CTCGAAGGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATCCTGCAAATAATGGTGCCTCTGA
** *
2325316 GCTAAGTG-GAATTGAACTCGAAGGTC-TTTG-G
130 GCTAAGTGTG-ATCAAACTCAAAGGTCTTTTGTG
* *
2325347 CAGATAACCCTTCTCTCCTTGAGTTATGCTATAAATGATGTGTC-TCTGAGCTGAGTGTAATCGA
1 CAGATAACCCTTCTATCCTTGAGTTATGCT-TAAATGATGTGCCTTC-GAGCTGAGTGTAATCGA
*
2325411 ACTCGAAGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATCCTGCAAATAATGGTGCCTCTG
64 ACTCGAAGGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATCCTGCAAATAATGGTGCCTCTG
* *
2325476 AGCTGAGTGTGGTCAAACTCAAAGGTCTTTTGTTAG
129 AGCTAAGTGTGATCAAACTCAAAGGTCTTTTG-T-G
* * * * * *
2325512 TAGATAACCCTTCTAGCCTTGAGTTATACTTCAAATGATATGCCTTGGAGCTGAGCT-TAGTCGA
1 CAGATAACCCTTCTATCCTTGAGTTATGCTT-AAATGATGTGCCTTCGAGCTGAG-TGTAATCGA
2325576 ACTCGAAGGTCTTT
64 ACTCGAAGGTCTTT
2325590 TGGTGATAAA
Statistics
Matches: 207, Mismatches: 27, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
160 2 0.01
161 132 0.64
162 5 0.02
164 1 0.00
165 65 0.31
166 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (162 bp):
CAGATAACCCTTCTATCCTTGAGTTATGCTTAAATGATGTGCCTTCGAGCTGAGTGTAATCGAAC
TCGAAGGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATCCTGCAAATAATGGTGCCTCTGAG
CTAAGTGTGATCAAACTCAAAGGTCTTTTGTG
Found at i:2325579 original size:84 final size:82
Alignment explanation
Indices: 2325246--2326129 Score: 517
Period size: 84 Copynumber: 10.7 Consensus size: 82
2325236 TTGAGTGGAA
* * *
2325246 TCGAACTCGAAGGTC-TTTG--GCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGGT
1 TCGAACTCGAAGGTCTTTTGTTGCAGATAACCCTTCTAGACTTAAGTTAT-CTTCAAATGAT-GT
* * * *
2325308 GCCTTTGAGCTAAG-TGGAA
64 GCCTTGGAGCTGAGCT-TAG
* *** *
2325327 TTGAACTCGAAGGTC-TTTG--GCAGATAACCCTTCTCTCCTTGAGTTATGCTAT-AAATGATGT
1 TCGAACTCGAAGGTCTTTTGTTGCAGATAACCCTTCTAGACTTAAGTTAT-CT-TCAAATGATGT
* *
2325388 GTCTCT-GAGCTGAG-TGTAA
64 GCCT-TGGAGCTGAGCT-TAG
* * * * *
2325407 TCGAACTCGAAGGTC-TTTG--GCAGATAGCCCTTCTCGACTTAAGCTATCCTGCAAATAATGGT
1 TCGAACTCGAAGGTCTTTTGTTGCAGATAACCCTTCTAGACTTAAGTTAT-CTTCAAATGAT-GT
*
2325469 GCCTCT-GAGCTGAG-TGTGG
64 GCCT-TGGAGCTGAGCT-TAG
* * * * * *
2325488 TCAAACTCAAAGGTCTTTTGTTAGTAGATAACCCTTCTAGCCTTGAGTTATACTTCAAATGATAT
1 TCGAACTCGAAGGTCTTTTGTT-GCAGATAACCCTTCTAGACTTAAGTTAT-CTTCAAATGATGT
2325553 GCCTTGGAGCTGAGCTTAG
64 GCCTTGGAGCTGAGCTTAG
* * * ** * *
2325572 TCGAACTCGAAGGTCTTTTGGTGATAAATAACCCTTCTAG-CATTGGGTTATGTTGTAAATGATG
1 TCGAACTCGAAGGTCTTTTGTTG-CAGATAACCCTTCTAGAC-TTAAGTTATCTT-CAAATGATG
* * *
2325636 TGCCCTCGAAGCTGAG-TGTAA
63 TG-CCTTGGAGCTGAGCT-TAG
* * *
2325657 TCGAACTCGAGGGTC-TTTG--GCAGATAACCCTTCTCA-ACTTAAGTTATGTTGCAAATGATAT
1 TCGAACTCGAAGGTCTTTTGTTGCAGATAACCCTTCT-AGACTTAAGTTATCTT-CAAATGATGT
* *
2325718 GCCTTGGAGTTGAGCGTAG
64 GCCTTGGAGCTGAGCTTAG
* * * * * *
2325737 TCGAACTCGAAGGTCTTTTGGTGACAGATAACTCTTCTAGGCTTGAGTTATGTTGTAAATGATGT
1 TCGAACTCGAAGGTCTTTTGTTG-CAGATAACCCTTCTAGACTTAAGTTATCTT-CAAATGATGT
*** *
2325802 GCCCTCAAAGCTGAG-TGTAA
64 G-CCTTGGAGCTGAGCT-TAG
* * * * * * *
2325822 TTGAACTCGAGGGTC-TTTG--GTAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
1 TCGAACTCGAAGGTCTTTTGTTGCAGATAACCCTTCTAGACTTAAGTTAT-CTTCAAATGATGTG
* *
2325884 CCTTGGAGCTGATCGTAG
65 CCTTGGAGCTGAGCTTAG
* * ** * * * *
2325902 TCAAACTCAAAGGTCTTGGGTTGGCAGATAACCTTTCTTGACTTAAGTTATGATGT-AAATGATA
1 TCGAACTCGAAGGTCTTTTGTT-GCAGATAACCCTTCTAGACTTAAGTTAT-CT-TCAAATGATG
* * *
2325966 TACTTTGGAGCTGAG-TGTAA
63 TGCCTTGGAGCTGAGCT-TAG
* * *** * *
2325986 TCGAACTCGAAGGTCTTTGGATGACAGATAGTGCTTCTCGACTTAAGTTATGCTGCAAATGATGT
1 TCGAACTCGAAGGTCTTTTGTTG-CAGATAACCCTTCTAGACTTAAGTTAT-CTTCAAATGATGT
* * *
2326051 GCCTTGGGGATGAGCGTAG
64 GCCTTGGAGCTGAGCTTAG
* * * *
2326070 TCAAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTACAAAT
1 TCGAACTCGAAGGTCTTTTGTT-GCAGATAACCCTTCTAGACTTAAGTTAT-CTTCAAAT
2326130 AGTTCCTTAA
Statistics
Matches: 632, Mismatches: 134, Indels: 71
0.76 0.16 0.08
Matches are distributed among these distances:
80 113 0.18
81 152 0.24
82 9 0.01
83 8 0.01
84 266 0.42
85 84 0.13
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (82 bp):
TCGAACTCGAAGGTCTTTTGTTGCAGATAACCCTTCTAGACTTAAGTTATCTTCAAATGATGTGC
CTTGGAGCTGAGCTTAG
Found at i:2325684 original size:165 final size:165
Alignment explanation
Indices: 2325249--2326121 Score: 731
Period size: 165 Copynumber: 5.3 Consensus size: 165
2325239 AGTGGAATCG
* * * * *
2325249 AACTCGAAGGTC-TTT-G-G-CAGATAACCCTTCTCG-ACTTAAGCTATGCTGCAAATGATGGTG
1 AACTCGAAGGTCTTTTGGTGACAGATAACCCTTCTAGCA-TTGAGTTATGTTGTAAATGAT-GTG
* * * * * * *** *
2325309 CCTTTG-AGCTAAGTGGAATTGAACTCGAAGGTCTTTGGCAGATAACCCTTCTCTCCTTGAGTTA
64 CCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTTGGCAGATAACCCTTCTAGACTTAAGTTA
** * * * * *
2325373 TGCTATAAATGATGTGTCTCT-GAGCTGAGTGTAATCG
129 TGCTGCAAATGATATGCCT-TGGAGCTGAGCGTAGTCA
* * * * ** * *
2325410 AACTCGAAGGTC-TTT-G-G-CAGATAGCCCTTCTCG-ACTTAAGCTATCCTGCAAATAATGGTG
1 AACTCGAAGGTCTTTTGGTGACAGATAACCCTTCTAGCA-TTGAGTTATGTTGTAAATGAT-GTG
** * * * * * *
2325470 -CCTCTG-AGCTGAGTGTGGTCAAACTCAAAGGTCTTTTGTTAGTAGATAACCCTTCTAGCCTTG
64 CCCTC-GAAGCTGAGTGTAATCGAACTCGAGGGTC-TTTG---GCAGATAACCCTTCTAGACTTA
* * * *
2325533 AGTTATACTTCAAATGATATGCCTTGGAGCTGAGCTTAGTCG
124 AGTTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCA
* * *
2325575 AACTCGAAGGTCTTTTGGTGATAAATAACCCTTCTAGCATTGGGTTATGTTGTAAATGATGTGCC
1 AACTCGAAGGTCTTTTGGTGACAGATAACCCTTCTAGCATTGAGTTATGTTGTAAATGATGTGCC
2325640 CTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTTGGCAGATAACCCTTCTCA-ACTTAAGTTAT
66 CTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTTGGCAGATAACCCTTCT-AGACTTAAGTTAT
* * *
2325704 GTTGCAAATGATATGCCTTGGAGTTGAGCGTAGTCG
130 GCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCA
*
2325740 AACTCGAAGGTCTTTTGGTGACAGATAACTCTTCTAGGC-TTGAGTTATGTTGTAAATGATGTGC
1 AACTCGAAGGTCTTTTGGTGACAGATAACCCTTCTA-GCATTGAGTTATGTTGTAAATGATGTGC
* * * * * *
2325804 CCTCAAAGCTGAGTGTAATTGAACTCGAGGGTCTTTGGTAGATAGCCCTTCTCGACTTAAGCTAT
65 CCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTTGGCAGATAACCCTTCTAGACTTAAGTTAT
* *
2325869 GCTGCAAATGATGTGCCTTGGAGCTGATCGTAGTCA
130 GCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCA
* * * * * * * *
2325905 AACTCAAAGGTC-TTGGGTTGGCAGATAACCTTTCTTG-ACTTAAGTTATGATGTAAATGATAT-
1 AACTCGAAGGTCTTTTGG-TGACAGATAACCCTTCTAGCA-TTGAGTTATGTTGTAAATGATGTG
* * * * * *** *
2325967 ACTTTGGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGATGACAGATAGTGCTTCTCGACTTAA
64 CCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTT-G--G-CAGATAACCCTTCTAGACTTAA
* * *
2326032 GTTATGCTGCAAATGATGTGCCTTGGGGATGAGCGTAGTCA
125 GTTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCA
* * *
2326073 AACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATG
1 AACTCGAAGGTCTTTTGGTGACAGATAACCCTTCTAGCATTGAGTTATG
2326122 CTACAAATAG
Statistics
Matches: 595, Mismatches: 92, Indels: 43
0.82 0.13 0.06
Matches are distributed among these distances:
160 2 0.00
161 78 0.13
162 4 0.01
164 36 0.06
165 309 0.52
166 6 0.01
167 2 0.00
168 102 0.17
169 55 0.09
170 1 0.00
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.32
Consensus pattern (165 bp):
AACTCGAAGGTCTTTTGGTGACAGATAACCCTTCTAGCATTGAGTTATGTTGTAAATGATGTGCC
CTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTTGGCAGATAACCCTTCTAGACTTAAGTTATG
CTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCA
Found at i:2325799 original size:249 final size:241
Alignment explanation
Indices: 2325210--2326123 Score: 807
Period size: 249 Copynumber: 3.7 Consensus size: 241
2325200 TTCCTTGAGC
* * * *
2325210 TATGTTGTAAATGATGTGCCTTCGG-GTTGAGTGGAATCGAACTCGAAGGTCTTTG-G-CAGATA
1 TATGTTGCAAATGATATGCCTT-GGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTGACAGATA
* * * * * *
2325272 ACCCTTCTCGACTTAAGCTATGCTGCAAATGATGGTGCCTTTGAGCTAAGTGGAATTGAACTCGA
65 ACCCTTCTAGACTTAAGTTATGCTGCAAATGAT-GTGCCTTGGAGCTGAGTGTAATCGAACTCGA
** * * *
2325337 AGGTCTTTGGCAGATAACCCTTCTCTCCTTGAGTTATGCTATAAATGATGTGTCTCTGAGCTGAG
129 AGGTCTTTGGCAGATAACCCTTCTAGCATTGAGTTATGCTGTAAATGATGTGCCTC-GAGCTGAG
* *
2325402 TGTAATCGAACTCGAAGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGC
193 TGTAATCGAACTCGAAGGTCTTTGGCAGATAACCCTTCTCGACTTAAGT
** * * ** * * * *
2325451 TATCCTGCAAATAATGGTGCCTCT-GAGCTGAGTGTGGTCAAACTCAAAGGTCTTTTGTTAGTAG
1 TATGTTGCAAATGAT-ATGCCT-TGGAGCTGAGTGTAATCGAACTCGAAGGTC-TTTGTGA-CAG
* * * * * *
2325515 ATAACCCTTCTAGCCTTGAGTTATACTTCAAATGATATGCCTTGGAGCTGAGCT-TAGTCGAACT
62 ATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAG-TGTAATCGAACT
* * * *
2325579 CGAAGGTCTTTTGGTGATAAATAACCCTTCTAGCATTGGGTTATGTTGTAAATGATGTGCCCTCG
126 CGAAGGTC-TTT-G-G-CAGATAACCCTTCTAGCATTGAGTTATGCTGTAAATGATGTG-CCTCG
* *
2325644 AAGCTGAGTGTAATCGAACTCGAGGGTCTTTGGCAGATAACCCTTCTCAACTTAAGT
186 -AGCTGAGTGTAATCGAACTCGAAGGTCTTTGGCAGATAACCCTTCTCGACTTAAGT
* * *
2325701 TATGTTGCAAATGATATGCCTTGGAGTTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTGACAGAT
1 TATGTTGCAAATGATATGCCTTGGAGCTGAGTGTAATCGAACTCGAAGGTC-TTT-GTGACAGAT
* * * * * *** *
2325766 AACTCTTCTAGGCTTGAGTTATGTTGTAAATGATGTGCCCTCAAAGCTGAGTGTAATTGAACTCG
64 AACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTG-CCTTGGAGCTGAGTGTAATCGAACTCG
* * * * * * * *
2325831 AGGGTCTTTGGTAGATAGCCCTTCTCG-ACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTG
128 AAGGTCTTTGGCAGATAACCCTTCTAGCA-TTGAGTTATGCTGTAAATGATGTGCC-TCGAGCTG
* * * * *
2325895 A-TCGTAGTCAAACTCAAAGGTCTTGGGTTGGCAGATAACCTTTCTTGACTTAAGT
191 AGT-GTAATCGAACTCGAAGGTC-T---TTGGCAGATAACCCTTCTCGACTTAAGT
* * * *
2325950 TATGATGTAAATGATATACTTTGGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGATGACAGAT
1 TATGTTGCAAATGATATGCCTTGGAGCTGAGTGTAATCGAACTCGAAGGTCTTT-G-TGACAGAT
*** * * * * * *
2326015 AGTGCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGGGATGAGCGTAGTCAAACTCGA
64 AACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGTGTAATCGAACTCGA
*
2326080 AGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCT
129 AGGTC---T-TTGGCAGATAACCCTTCTAGCATTGAGTTATGCT
2326124 ACAAATAGTT
Statistics
Matches: 534, Mismatches: 108, Indels: 51
0.77 0.16 0.07
Matches are distributed among these distances:
241 12 0.02
242 26 0.05
243 5 0.01
244 1 0.00
245 52 0.10
246 71 0.13
247 2 0.00
248 31 0.06
249 211 0.40
250 95 0.18
251 1 0.00
252 27 0.05
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (241 bp):
TATGTTGCAAATGATATGCCTTGGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTGACAGATAA
CCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGTGTAATCGAACTCGAAG
GTCTTTGGCAGATAACCCTTCTAGCATTGAGTTATGCTGTAAATGATGTGCCTCGAGCTGAGTGT
AATCGAACTCGAAGGTCTTTGGCAGATAACCCTTCTCGACTTAAGT
Found at i:2330181 original size:10 final size:11
Alignment explanation
Indices: 2330166--2330194 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
2330156 GCAAAAGATG
2330166 AAAATAAAAT-
1 AAAATAAAATA
2330176 AAAATAAAATA
1 AAAATAAAATA
2330187 AAAATAAA
1 AAAATAAA
2330195 GAAAAGTTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:2331396 original size:3 final size:3
Alignment explanation
Indices: 2331390--2331417 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
2331380 AAAATAAGAA
2331390 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
2331418 GTAAATGTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:2331477 original size:26 final size:25
Alignment explanation
Indices: 2331448--2331496 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
2331438 ATATTAGGGA
* *
2331448 AAAATAAATAAAAAATATACAAAATT
1 AAAATAAA-AAAAAACATAAAAAATT
2331474 AAAATAAAAAAAAACATAAAAAA
1 AAAATAAAAAAAAACATAAAAAA
2331497 CCACTTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 13 0.62
26 8 0.38
ACGTcount: A:0.80, C:0.04, G:0.00, T:0.16
Consensus pattern (25 bp):
AAAATAAAAAAAAACATAAAAAATT
Found at i:2332616 original size:8 final size:7
Alignment explanation
Indices: 2332598--2332630 Score: 57
Period size: 7 Copynumber: 4.6 Consensus size: 7
2332588 AATATGTAAT
2332598 AAAAAAG
1 AAAAAAG
2332605 AAAAAAG
1 AAAAAAG
2332612 AAAAAAG
1 AAAAAAG
2332619 AAAAAAAG
1 -AAAAAAG
2332627 AAAA
1 AAAA
2332631 TAATAATAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 18 0.72
8 7 0.28
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:2332617 original size:14 final size:15
Alignment explanation
Indices: 2332598--2332630 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
2332588 AATATGTAAT
2332598 AAAAAAG-AAAAAAG
1 AAAAAAGAAAAAAAG
2332612 AAAAAAGAAAAAAAG
1 AAAAAAGAAAAAAAG
2332627 AAAA
1 AAAA
2332631 TAATAATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (15 bp):
AAAAAAGAAAAAAAG
Found at i:2332698 original size:37 final size:37
Alignment explanation
Indices: 2332657--2333032 Score: 196
Period size: 37 Copynumber: 9.9 Consensus size: 37
2332647 TTAATATAAT
* *
2332657 AAAAAACATTTTTAAAACTATATA-ATATATGTGTTTA
1 AAAAAACATTTTAAAAACTATATATATATATAT-TTTA
* *
2332694 AAAAATA-ATTTTCAAAACTATATA-ATATATATTTTC
1 AAAAA-ACATTTTAAAAACTATATATATATATATTTTA
***
2332730 AAAAATTGTTTTAAAAACTTATATATTATATATATTTTA
1 AAAAAACATTTTAAAAAC-TATATA-TATATATATTTTA
* *
2332769 CAAAAACATTTTAAAAATTATATATATATATATATATATA
1 AAAAAACATTTTAAAAACTATATATATATATAT-T-T-TA
* ** *
2332809 TATTTTAAAATGTTTTAAAAACTATATAATATATATATGTTTT
1 -A---AAAAACATTTTAAAAACTATAT-ATATATATAT-TTTA
* ** ***
2332852 CAAAATTA-TTTAAAAACTATATA-ATATATA-AAAA
1 AAAAAACATTTTAAAAACTATATATATATATATTTTA
** * *
2332886 AATTTAAAATGTTTTAAAAACTATATGATATATACATGTTTT
1 AA---AAAACATTTTAAAAACTATAT-ATATATATAT-TTTA
* **
2332928 TAAAAATGTTTTAAAAACTATATATTATATATATTTT-
1 AAAAAACATTTTAAAAACTATATA-TATATATATTTTA
* *** *
2332965 CAAAATGTTTTTAAAAACTATATATTATACATATTTT-
1 AAAAAACATTTTAAAAACTATATA-TATATATATTTTA
* **
2333002 -CAAAATGTTTTAAAAACTATATA-ATATATAT
1 AAAAAACATTTTAAAAACTATATATATATATAT
2333033 GTATATGTTT
Statistics
Matches: 270, Mismatches: 47, Indels: 47
0.74 0.13 0.13
Matches are distributed among these distances:
34 8 0.03
36 43 0.16
37 80 0.30
38 40 0.15
39 59 0.22
40 8 0.03
42 1 0.00
43 1 0.00
44 19 0.07
45 11 0.04
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (37 bp):
AAAAAACATTTTAAAAACTATATATATATATATTTTA
Found at i:2332794 original size:2 final size:2
Alignment explanation
Indices: 2332787--2332811 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
2332777 TTTTAAAAAT
2332787 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
2332812 TTTAAAATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2332814 original size:47 final size:43
Alignment explanation
Indices: 2332749--2332846 Score: 126
Period size: 44 Copynumber: 2.2 Consensus size: 43
2332739 TTTAAAAACT
*
2332749 TATATAT-TATATATATTTTACAAAAACATTTTAAAAATTATATATA
1 TATATATATATATATATTTT---AAAACATTTTAAAAACTATATA-A
**
2332795 TATATATATATATATATTTTAAAATGTTTTAAAAACTATATAA
1 TATATATATATATATATTTTAAAACATTTTAAAAACTATATAA
2332838 TATATATAT
1 TATATATAT
2332847 GTTTTCAAAA
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
43 10 0.21
44 19 0.40
46 7 0.15
47 12 0.25
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (43 bp):
TATATATATATATATATTTTAAAACATTTTAAAAACTATATAA
Found at i:2332857 original size:38 final size:38
Alignment explanation
Indices: 2332793--2333116 Score: 360
Period size: 38 Copynumber: 8.5 Consensus size: 38
2332783 AAATTATATA
2332793 TATATATATATATATATATTTT-AAAATGTTTTAAAAAC
1 TATATA-ATATATATATATTTTCAAAATGTTTTAAAAAC
*
2332831 TATATAATATATATATGTTTTCAAAAT-TATTTAAAAAC
1 TATATAATATATATATATTTTCAAAATGT-TTTAAAAAC
* * *
2332869 TATATAATATATAAAAAAATTT-AAAATGTTTTAAAAAC
1 TATATAATATAT-ATATATTTTCAAAATGTTTTAAAAAC
* * * *
2332907 TATATGATATATACATGTTTTTAAAAATGTTTTAAAAAC
1 TATATAATATATATAT-ATTTTCAAAATGTTTTAAAAAC
2332946 TATAT-AT-TATATATATTTTCAAAATGTTTTTAAAAAC
1 TATATAATATATATATATTTTCAAAATG-TTTTAAAAAC
*
2332983 TATAT-AT-TATACATATTTTCAAAATGTTTTAAAAAC
1 TATATAATATATATATATTTTCAAAATGTTTTAAAAAC
2333019 TATATAATATATATGTATATGTTTTCAAAAATGTTTTAAAAAC
1 TATATAATATATA--TATA--TTTTC-AAAATGTTTTAAAAAC
* * *
2333062 T-TATACAT-CATATATATTTTCAAAATGTTTTCAAAAT
1 TATATA-ATATATATATATTTTCAAAATGTTTTAAAAAC
* *
2333099 TATATTATATATACATAT
1 TATATAATATATATATAT
2333117 ATATATTATA
Statistics
Matches: 248, Mismatches: 21, Indels: 34
0.82 0.07 0.11
Matches are distributed among these distances:
36 25 0.10
37 77 0.31
38 81 0.33
39 27 0.11
40 7 0.03
42 12 0.05
43 19 0.08
ACGTcount: A:0.46, C:0.06, G:0.04, T:0.45
Consensus pattern (38 bp):
TATATAATATATATATATTTTCAAAATGTTTTAAAAAC
Found at i:2333960 original size:161 final size:161
Alignment explanation
Indices: 2333694--2334567 Score: 497
Period size: 165 Copynumber: 5.3 Consensus size: 161
2333684 GACCAATTTA
* * *
2333694 TTGACAGATAACCCTTCTCGCCTTGAGTTATGCTGTAAATGATGTACCTTCGGGATGAGTGGAAT
1 TTGACAGATAACCCTTCTCGCCTTCAGTTATGCTGCAAATGATGTACCTTCGAGATGAGTGGAAT
* * *
2333759 CGAACTCGAAGGTCTTTGGCAGATAACCCTTCTTGACTTAAGCTATGCTGGAAATGATGGTGCCT
66 CGAACTCGAAGGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAACGATGGTGCCT
2333824 TTGAGCTAAGTGGAATCCAACTCGAAGGTCT
131 TTGAGCTAAGTGGAATCCAACTCGAAGGTCT
* * *
2333855 TTGACAGATAACCCTTCTCGCTTTCAGTTATGCTGCAAATGATGTACC-TCTGAGTTGAGTGTAA
1 TTGACAGATAACCCTTCTCGCCTTCAGTTATGCTGCAAATGATGTACCTTC-GAGATGAGTGGAA
* *
2333919 TCGAACTCGAAGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGTTGCAAACGATGGTGCC
65 TCGAACTCGAAGGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAACGATGGTGCC
* * * * * *
2333984 TCTAAACTGAGCGTGG--TCAAACTTGAAGGTCTTTT
130 TTTGAGCT-A-AGTGGAATCCAACTCGAAGGTC---T
** * * * * * * * * * * *
2334019 GTTGGTAGATAACCCTTCTAGCCTTGAGTTATGCTACAAATGATATGCCTTGGAGCTAAGCGTAG
1 -TTGACAGATAACCCTTCTCGCCTTCAGTTATGCTGCAAATGATGTACCTTCGAGATGAGTGGAA
* * * * * ** * * * *
2334084 TCAAACTTGAAGGTCTTTTAGTGATAAATAACCCTTCTAGTA-TTGGGTTATGTTGTAAATGAT-
65 TCGAACTCGAAGGTC-TTT-G-G-CAGATAACCCTTCTCG-ACTTAAGCTATGCTGCAAACGATG
* * * * * * * *
2334147 ATTCCCTCGAAGCTGAGTGTAATCAAACTCGAGGGTCT
125 GTGCCTTTG-AGCTAAGTGGAATCCAACTCGAAGGTCT
* * * * * * * * * * * *
2334185 TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGT
1 TTGACAGATAACCCTTCTCGCCTTCAGTTATGCTGCAAATGATGTACCTTCGAGATGAGTGGAAT
* * * * * ** * * *
2334250 CGAACTCGAATGTCTTTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATATTGTAAATGAT-AT
66 CGAACTCGAAGGTC-TTT-G-G-CAGATAACCCTTCTCGACTTAAGCTATGCTGCAAACGATGGT
* * * * * *
2334314 GCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCT
127 GCCTTTG-AGCTAAGTGGAATCCAACTCGAAGGTCT
* ** * ** * * * *
2334350 TTGGCAGATAGTCCTTATCTACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGATCGTGG-
1 TTGACAGATAACCCTTCTCGCCTTCAGTTATGCTGCAAATGATGTACCTTCGAGATGA--GTGGA
* * * *
2334414 -TCGAACTCGAAGGTCTTTGGTTGGCATATAACCCTTATCGACTTAAGTTATGCTGCAAATGAT-
64 ATCGAACTCGAAGGTC--T--TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAACGATG
* * * * * * *
2334477 ATACCTTGGACCTGAGTGTAATCGAACTCGAAGGTCCTTT
125 GTGCCTTTGAGCTAAGTGGAATCCAACTCGAAGGT-C--T
* * * * * *
2334517 TATGGCAGATAGCCCTTCTCGACTTAAGCTATGCTACAAATGATGTACCTT
1 T-TGACAGATAACCCTTCTCGCCTTCAGTTATGCTGCAAATGATGTACCTT
2334568 GGGACGAGCA
Statistics
Matches: 588, Mismatches: 99, Indels: 45
0.80 0.14 0.06
Matches are distributed among these distances:
160 2 0.00
161 133 0.23
162 1 0.00
163 4 0.01
164 25 0.04
165 312 0.53
166 8 0.01
167 9 0.02
168 49 0.08
169 44 0.07
170 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.32
Consensus pattern (161 bp):
TTGACAGATAACCCTTCTCGCCTTCAGTTATGCTGCAAATGATGTACCTTCGAGATGAGTGGAAT
CGAACTCGAAGGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAACGATGGTGCCT
TTGAGCTAAGTGGAATCCAACTCGAAGGTCT
Done.