Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007867.1 Hibiscus syriacus cultivar Beakdansim tig00110239_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3477501
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 17 of 18
Found at i:3162976 original size:19 final size:19
Alignment explanation
Indices: 3162928--3162977 Score: 75
Period size: 19 Copynumber: 2.6 Consensus size: 19
3162918 TATTATTAAA
*
3162928 ATTATTATTATTATTTATT
1 ATTATTATTAATATTTATT
3162947 ATTATTATTAATA-TTATT
1 ATTATTATTAATATTTATT
3162965 ATTTATTATTAAT
1 A-TTATTATTAAT
3162978 TACAAGCCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
18 6 0.21
19 23 0.79
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (19 bp):
ATTATTATTAATATTTATT
Found at i:3164159 original size:15 final size:14
Alignment explanation
Indices: 3164141--3164192 Score: 56
Period size: 15 Copynumber: 3.7 Consensus size: 14
3164131 TATTTTGCAA
3164141 TTTAATATTATTACT
1 TTTAATATTATTA-T
3164156 TTTAA-A-T-TTAT
1 TTTAATATTATTAT
3164167 TTTAAATATTATTAT
1 TTT-AATATTATTAT
3164182 TTATAATATTA
1 TT-TAATATTA
3164193 ATTTGTTATT
Statistics
Matches: 32, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
11 4 0.12
12 5 0.16
13 2 0.06
14 2 0.06
15 18 0.56
16 1 0.03
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (14 bp):
TTTAATATTATTAT
Found at i:3164220 original size:17 final size:17
Alignment explanation
Indices: 3164198--3164231 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
3164188 TATTAATTTG
3164198 TTATTACTTTT-ATATTA
1 TTATTA-TTTTCATATTA
3164215 TTATTATTTTCATATTA
1 TTATTATTTTCATATTA
3164232 GTCACATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (17 bp):
TTATTATTTTCATATTA
Found at i:3164246 original size:4 final size:4
Alignment explanation
Indices: 3164237--3164263 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
3164227 TATTAGTCAC
3164237 ATAA ATAA ATAA ATAA ATAA ATAA ATA
1 ATAA ATAA ATAA ATAA ATAA ATAA ATA
3164264 TATATATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAA
Found at i:3164268 original size:2 final size:2
Alignment explanation
Indices: 3164261--3164286 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
3164251 AAATAAATAA
3164261 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
3164287 TAAATAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3165760 original size:15 final size:15
Alignment explanation
Indices: 3165740--3165777 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
3165730 TTTTTCAAAC
3165740 AAAGCATGGAACTAG
1 AAAGCATGGAACTAG
3165755 AAAGCATGGAACTAG
1 AAAGCATGGAACTAG
3165770 AAAGCATG
1 AAAGCATG
3165778 AGGTTAAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.47, C:0.13, G:0.26, T:0.13
Consensus pattern (15 bp):
AAAGCATGGAACTAG
Found at i:3171680 original size:114 final size:114
Alignment explanation
Indices: 3171480--3171698 Score: 368
Period size: 114 Copynumber: 1.9 Consensus size: 114
3171470 CATGTTCTCG
*
3171480 TAGTAGAAATAAGGAAACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTT
1 TAGTAGAAATAAGGAAACCCAATAGCATCTTCTGGAAATGTTCTTTGAGTTATCTGATCTGATTT
* *
3171545 GGTATGAACCCCAAAACCAATCATTGGATTTGAAAGATGATTTTGCTCA
66 GGTAGGAACCCCAAAACCAATCATTGGAATTGAAAGATGATTTTGCTCA
* *
3171594 TAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAATGTTCTTTGAGTTATCTGATCTGGTTC
1 TAGTAGAAATAAGGAAACCCAATAGCATCTTCTGGAAATGTTCTTTGAGTTATCTGATCTGATT-
*
3171659 T-GTAGGAACCCCAGAACCAATCATTGGAATTGAAAGATGA
65 TGGTAGGAACCCCAAAACCAATCATTGGAATTGAAAGATGA
3171699 ACTGCATGAT
Statistics
Matches: 98, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
114 97 0.99
115 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.31
Consensus pattern (114 bp):
TAGTAGAAATAAGGAAACCCAATAGCATCTTCTGGAAATGTTCTTTGAGTTATCTGATCTGATTT
GGTAGGAACCCCAAAACCAATCATTGGAATTGAAAGATGATTTTGCTCA
Found at i:3173838 original size:54 final size:52
Alignment explanation
Indices: 3173735--3173888 Score: 199
Period size: 54 Copynumber: 3.0 Consensus size: 52
3173725 TGATTGAGAA
**
3173735 ATCTGAGCAAAAGCCACAGAAAAGGATGAATGTGTTGTCAAATACTTTACAAAC
1 ATCTGAGCAAAAGCCACAGAAAAGGATGAATGTGTTGTCAAATGTTTTAC--AC
3173789 ATCTGAGCAAAAGCCACAGAAAAGGATGAATGTGTTGTCAAATGTTTT--AC
1 ATCTGAGCAAAAGCCACAGAAAAGGATGAATGTGTTGTCAAATGTTTTACAC
* * *
3173839 ATCTAAGCAGAAA-CCACATG-AAATGATGCATGTGTTGTCAAATGTTTTAC
1 ATCTGAGCA-AAAGCCACA-GAAAAGGATGAATGTGTTGTCAAATGTTTTAC
3173889 TAACCAGTTA
Statistics
Matches: 91, Mismatches: 5, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
50 41 0.45
51 4 0.04
54 46 0.51
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.26
Consensus pattern (52 bp):
ATCTGAGCAAAAGCCACAGAAAAGGATGAATGTGTTGTCAAATGTTTTACAC
Found at i:3173872 original size:50 final size:50
Alignment explanation
Indices: 3173735--3173888 Score: 186
Period size: 50 Copynumber: 3.0 Consensus size: 50
3173725 TGATTGAGAA
* * *
3173735 ATCTGAGCAAAAGCCACAGAAAAGGATGAATGTGTTGTCAAATACTTTACAAAC
1 ATCTAAGCAAAAGCCACAGAAAAGGATGAATGTGTTGTCAAAT-GTTT---TAC
*
3173789 ATCTGAGCAAAAGCCACAGAAAAGGATGAATGTGTTGTCAAATGTTTTAC
1 ATCTAAGCAAAAGCCACAGAAAAGGATGAATGTGTTGTCAAATGTTTTAC
* *
3173839 ATCTAAGCAGAAA-CCACATG-AAATGATGCATGTGTTGTCAAATGTTTTAC
1 ATCTAAGCA-AAAGCCACA-GAAAAGGATGAATGTGTTGTCAAATGTTTTAC
3173889 TAACCAGTTA
Statistics
Matches: 93, Mismatches: 5, Indels: 8
0.88 0.05 0.08
Matches are distributed among these distances:
50 43 0.46
51 4 0.04
53 3 0.03
54 43 0.46
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.26
Consensus pattern (50 bp):
ATCTAAGCAAAAGCCACAGAAAAGGATGAATGTGTTGTCAAATGTTTTAC
Found at i:3174270 original size:22 final size:22
Alignment explanation
Indices: 3174244--3174320 Score: 136
Period size: 22 Copynumber: 3.5 Consensus size: 22
3174234 ATCTAAACTC
3174244 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
*
3174266 TTCAAAGATGATAGGTTCTCTT
1 TTCAAAGATGATAGATTCTCTT
*
3174288 TTTAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
3174310 TTCAAAGATGA
1 TTCAAAGATGA
3174321 AAGCTTTATG
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 51 1.00
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.40
Consensus pattern (22 bp):
TTCAAAGATGATAGATTCTCTT
Found at i:3175053 original size:31 final size:31
Alignment explanation
Indices: 3175018--3175085 Score: 118
Period size: 31 Copynumber: 2.2 Consensus size: 31
3175008 CTACAGTGCA
*
3175018 TGATGTTTCCAAAAAGCCTTCGGGAGCTTTT
1 TGATGTTTCCAAAAAGCCTTCAGGAGCTTTT
*
3175049 TGATGTTTCCAAAAAGCCTTCAGGATCTTTT
1 TGATGTTTCCAAAAAGCCTTCAGGAGCTTTT
3175080 TGATGT
1 TGATGT
3175086 CTTCAAAGCC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.38
Consensus pattern (31 bp):
TGATGTTTCCAAAAAGCCTTCAGGAGCTTTT
Found at i:3175279 original size:76 final size:76
Alignment explanation
Indices: 3175049--3175665 Score: 1020
Period size: 76 Copynumber: 8.1 Consensus size: 76
3175039 GGGAGCTTTT
* * *
3175049 TGATGTTTCCAAAAAGCCTTCAGGATCTTTTTGATGTCTTCAAAGCCTTAGGGTCATCTGTAAGT
1 TGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGT
3175114 CCTACAGTGCA
66 CCTACAGTGCA
*
3175125 TGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTTGATGATTTCAAAGCCTTAGGGTCATCTGTAAG
1 TGATGTTTCCAAAAAGCCTTCGGGAGC-TTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAG
3175190 TCCTACAGTGCA
65 TCCTACAGTGCA
3175202 TGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGT
1 TGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGT
*
3175267 CCAACAGTGCA
66 CCTACAGTGCA
* *
3175278 TGATGTTTCCAAAAAGCCATCGGGAGCTTTTTGATGTTTTCAAAACCTTAGGGTCATCTGTAAGT
1 TGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGT
3175343 CCTACAGTGCA
66 CCTACAGTGCA
*
3175354 TGATGTTTCCAAAAAGCATTCGGGAGCTTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGT
1 TGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGT
*
3175419 CCTGCAGTGCA
66 CCTACAGTGCA
* *
3175430 TGATGTTTCCAAAAAGCCTTCAGGAGCTTTTTGATGTTTTCAAA-CCTTCGGGTCATCTGTAAGT
1 TGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGT
* *
3175494 TCTGCAGTGCA
66 CCTACAGTGCA
* * * *
3175505 TGATGTTTCCAAAAAAACCTTCAGGAGCTTTTTGATGTTTTCAAAACCTTAGGGTCATCTTTAAG
1 TGATGTTTCC-AAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAG
**
3175570 TCCTGTAGTGCA
65 TCCTACAGTGCA
*
3175582 TGATGTTTCCAAAAAGCCTTCGGGAACTTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGT
1 TGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGT
*
3175647 CCTGCAGTGCA
66 CCTACAGTGCA
3175658 TGATGTTT
1 TGATGTTT
3175666 TTTAAGACCT
Statistics
Matches: 510, Mismatches: 28, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
75 39 0.08
76 360 0.71
77 111 0.22
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (76 bp):
TGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGT
CCTACAGTGCA
Found at i:3175827 original size:3 final size:3
Alignment explanation
Indices: 3175819--3175884 Score: 96
Period size: 3 Copynumber: 21.3 Consensus size: 3
3175809 TTTTTCTTAA
**
3175819 ATT ATT ATT AAA ATT ATT ATT ATT ATTT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT
3175865 ATT ATT ATT ATTT ATT ATT A
1 ATT ATT ATT A-TT ATT ATT A
3175885 ATTACAAGCC
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
3 51 0.89
4 6 0.11
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:3175857 original size:31 final size:31
Alignment explanation
Indices: 3175819--3175884 Score: 114
Period size: 31 Copynumber: 2.1 Consensus size: 31
3175809 TTTTTCTTAA
3175819 ATTATTATTAAAATTATTATTATTATTTATT
1 ATTATTATTAAAATTATTATTATTATTTATT
**
3175850 ATTATTATTATTATTATTATTATTATTTATT
1 ATTATTATTAAAATTATTATTATTATTTATT
3175881 ATTA
1 ATTA
3175885 ATTACAAGCC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (31 bp):
ATTATTATTAAAATTATTATTATTATTTATT
Found at i:3177110 original size:15 final size:14
Alignment explanation
Indices: 3177092--3177172 Score: 62
Period size: 15 Copynumber: 5.7 Consensus size: 14
3177082 TATTTTGTAA
3177092 TTTAATATTATTACT
1 TTTAATATTATTA-T
3177107 TTTAA-A-T-TTAT
1 TTTAATATTATTAT
3177118 TTTAAATATTATTAT
1 TTT-AATATTATTAT
3177133 TTATAATATTAATT-T
1 TT-TAATATT-ATTAT
* *
3177148 GTTATTATATATTAT
1 TTTAATAT-TATTAT
*
3177163 TTTCATATTA
1 TTTAATATTA
3177173 GTCAAATAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 17
0.71 0.07 0.23
Matches are distributed among these distances:
11 4 0.08
12 5 0.09
13 2 0.04
14 12 0.23
15 26 0.49
16 4 0.08
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.60
Consensus pattern (14 bp):
TTTAATATTATTAT
Found at i:3177185 original size:4 final size:4
Alignment explanation
Indices: 3177176--3177200 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
3177166 CATATTAGTC
3177176 AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT A
3177201 TATATATATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:3179093 original size:23 final size:21
Alignment explanation
Indices: 3179067--3179109 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
3179057 ACACAACTAA
3179067 AATTAGAAACAATATCATAAATT
1 AATTA-AAAC-ATATCATAAATT
*
3179090 AATTAAAACCTATCATAAAT
1 AATTAAAACATATCATAAAT
3179110 AAAAATGTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 10 0.53
22 4 0.21
23 5 0.26
ACGTcount: A:0.56, C:0.12, G:0.02, T:0.30
Consensus pattern (21 bp):
AATTAAAACATATCATAAATT
Found at i:3180586 original size:3 final size:3
Alignment explanation
Indices: 3180580--3180644 Score: 100
Period size: 3 Copynumber: 22.3 Consensus size: 3
3180570 TAAAAAAAAG
3180580 TAA TAA TAA TAA T-A TAA TAA TAA TAA T-A TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
3180626 TAA TAA T-A TAA TTAA TAA T
1 TAA TAA TAA TAA -TAA TAA T
3180645 TTTTTTCGAG
Statistics
Matches: 58, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
2 6 0.10
3 49 0.84
4 3 0.05
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:3180599 original size:14 final size:14
Alignment explanation
Indices: 3180580--3180644 Score: 107
Period size: 14 Copynumber: 4.7 Consensus size: 14
3180570 TAAAAAAAAG
3180580 TAATAATAATAATA
1 TAATAATAATAATA
3180594 TAATAATAATAATA
1 TAATAATAATAATA
3180608 TAATAATAAT-A-A
1 TAATAATAATAATA
3180620 TAATAATAATAATA
1 TAATAATAATAATA
3180634 TAATTAATAAT
1 TAA-TAATAAT
3180645 TTTTTTCGAG
Statistics
Matches: 48, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
12 11 0.23
13 2 0.04
14 28 0.58
15 7 0.15
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
TAATAATAATAATA
Found at i:3181693 original size:11 final size:11
Alignment explanation
Indices: 3181677--3181701 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
3181667 AGGAAAGGCG
3181677 GGCTAATATAC
1 GGCTAATATAC
3181688 GGCTAATATAC
1 GGCTAATATAC
3181699 GGC
1 GGC
3181702 GTTACTGGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (11 bp):
GGCTAATATAC
Found at i:3182183 original size:162 final size:162
Alignment explanation
Indices: 3181916--3182431 Score: 663
Period size: 162 Copynumber: 3.1 Consensus size: 162
3181906 GTCTCGAAAA
* * * * *
3181916 GACAAAACCGGTAAAGCGGTACCGGATATATTGAAAGTGTTGATACTTTAATATAAGTATCGACA
1 GACAAAACCGGTAAAGAGCTACCGGATATATTGAAAGAGTAGATACTTTAATAAAAGTATCGACA
3181981 CTTTGTGAATTTAAAAGAGAAGCAGTTTTAGAACCTATAAAGTGTCGATACTTTATAACAATGTA
66 CTTTGTGAATTTAAAAGAGAAGCAGTTTTAGAACCTATAAAGTGTCGATACTTTATAACAATGTA
*
3182046 TCGATCCACAACGATATAACAGGTAAAAATAT
131 TCGAACCACAACGATATAACAGGTAAAAATAT
* *
3182078 GACAAAACCGGTATAGAGCTACCGGATATATTGAAAGAGTAGATACTTTAATAAAAGTGTCGACA
1 GACAAAACCGGTAAAGAGCTACCGGATATATTGAAAGAGTAGATACTTTAATAAAAGTATCGACA
** *
3182143 CTTTGTGAATTTAAAAGAGAAGCAGTTTTAGTGCCTATAAAGTGTCGATATTTTATAACAATGTA
66 CTTTGTGAATTTAAAAGAGAAGCAGTTTTAGAACCTATAAAGTGTCGATACTTTATAACAATGTA
3182208 TCGAACCACAACGATATAACAGGTAAAAATAT
131 TCGAACCACAACGATATAACAGGTAAAAATAT
* * *
3182240 GACAAAACCGGTCTCTAAAGGACAAAACTGGTATAGAGTGACCGGATATATTGAAAGTGTCGATA
1 GACAAAACCGG----T--------AAA---G---AG-CT-ACCGGATATATTGAAAGAGTAGATA
* ** *
3182305 CTTTAATATAAGTATCGACACTTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGCCAATAAAGTGT
46 CTTTAATAAAAGTATCGACACTTTGTGAATTTAAAAGAGAAGCAGTTTTAGAACCTATAAAGTGT
* * *
3182370 CGATACTTTATAAAAATGTATCGATCCATAACGATATAACAGGTAAAAATAT
111 CGATACTTTATAACAATGTATCGAACCACAACGATATAACAGGTAAAAATAT
3182422 GACAAAACCG
1 GACAAAACCG
3182432 ATCTCTAAAT
Statistics
Matches: 311, Mismatches: 23, Indels: 20
0.88 0.06 0.06
Matches are distributed among these distances:
162 162 0.52
166 1 0.00
174 2 0.01
177 1 0.00
180 2 0.01
181 1 0.00
182 142 0.46
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (162 bp):
GACAAAACCGGTAAAGAGCTACCGGATATATTGAAAGAGTAGATACTTTAATAAAAGTATCGACA
CTTTGTGAATTTAAAAGAGAAGCAGTTTTAGAACCTATAAAGTGTCGATACTTTATAACAATGTA
TCGAACCACAACGATATAACAGGTAAAAATAT
Found at i:3182307 original size:182 final size:181
Alignment explanation
Indices: 3182078--3182495 Score: 656
Period size: 182 Copynumber: 2.3 Consensus size: 181
3182068 GTAAAAATAT
* * * *
3182078 GACAAAACCGGTATAGAGCTACCGGATATATTGAAAGAGTAGATACTTTAATAAAAGTGTCGACA
1 GACAAAACTGGTATAGAG-TACCGGATATATTGAAAGTGTCGATACTTTAATAAAAGTATCGACA
* * * *
3182143 CTTTGTGAATTTAAAAGAGAAGCAGTTTTAGTGCCTATAAAGTGTCGATATTTTATAACAATGTA
65 CTTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTA
*
3182208 TCGAACCACAACGATATAACAGGTAAAAATATGACAAAACCGGTCTCTAAAG
130 TCGAACCACAACGATATAACAGGTAAAAATATGACAAAACCGATCTCTAAAG
*
3182260 GACAAAACTGGTATAGAGTGACCGGATATATTGAAAGTGTCGATACTTTAATATAAGTATCGACA
1 GACAAAACTGGTATAGAGT-ACCGGATATATTGAAAGTGTCGATACTTTAATAAAAGTATCGACA
3182325 CTTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTA
65 CTTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTA
* * *
3182390 TCGATCCATAACGATATAACAGGTAAAAATATGACAAAACCGATCTCTAAAT
130 TCGAACCACAACGATATAACAGGTAAAAATATGACAAAACCGATCTCTAAAG
* * * *
3182442 GACAAAACTAGTAAAGTGTTACAGGATATATTGAAAGTGTCGATACTTTAATAA
1 GACAAAACTGGTATAGAG-TACCGGATATATTGAAAGTGTCGATACTTTAATAA
3182496 GTACGCGTAA
Statistics
Matches: 216, Mismatches: 18, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
181 1 0.00
182 214 0.99
183 1 0.00
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.28
Consensus pattern (181 bp):
GACAAAACTGGTATAGAGTACCGGATATATTGAAAGTGTCGATACTTTAATAAAAGTATCGACAC
TTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTAT
CGAACCACAACGATATAACAGGTAAAAATATGACAAAACCGATCTCTAAAG
Found at i:3183769 original size:38 final size:38
Alignment explanation
Indices: 3183718--3183794 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
3183708 TGTAAATACG
3183718 TTGATACAAAATATAATAACTATAACATTATATATTGT
1 TTGATACAAAATATAATAACTATAACATTATATATTGT
3183756 TTGATACAAAATATAATAACTATAACATTATATATTGT
1 TTGATACAAAATATAATAACTATAACATTATATATTGT
3183794 T
1 T
3183795 AAAAATGTAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.47, C:0.08, G:0.05, T:0.40
Consensus pattern (38 bp):
TTGATACAAAATATAATAACTATAACATTATATATTGT
Found at i:3183788 original size:19 final size:19
Alignment explanation
Indices: 3183728--3183789 Score: 54
Period size: 19 Copynumber: 3.3 Consensus size: 19
3183718 TTGATACAAA
3183728 ATATAATAACTATAACATT
1 ATATAATAACTATAACATT
* *** **
3183747 ATATATTGTTTGAT-ACAAA
1 ATATAATAACT-ATAACATT
3183766 ATATAATAACTATAACATT
1 ATATAATAACTATAACATT
3183785 ATATA
1 ATATA
3183790 TTGTTAAAAA
Statistics
Matches: 29, Mismatches: 12, Indels: 4
0.64 0.27 0.09
Matches are distributed among these distances:
18 2 0.07
19 25 0.86
20 2 0.07
ACGTcount: A:0.50, C:0.08, G:0.03, T:0.39
Consensus pattern (19 bp):
ATATAATAACTATAACATT
Found at i:3184463 original size:22 final size:23
Alignment explanation
Indices: 3184412--3184467 Score: 62
Period size: 24 Copynumber: 2.5 Consensus size: 23
3184402 TAACGTTTTT
*
3184412 ATTTT-TTATATAAAATGATAGT
1 ATTTTATTATATAAAATGATAGA
* *
3184434 ATAGTTATTATATAAAATTATA-A
1 AT-TTTATTATATAAAATGATAGA
3184457 ATTTTATTATA
1 ATTTTATTATA
3184468 AATGCAGGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
22 10 0.36
23 4 0.14
24 14 0.50
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (23 bp):
ATTTTATTATATAAAATGATAGA
Found at i:3184873 original size:21 final size:21
Alignment explanation
Indices: 3184849--3184889 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
3184839 AAAACAATCA
3184849 AGAGTCGAAAAGAAACTTGAG
1 AGAGTCGAAAAGAAACTTGAG
* *
3184870 AGAGTCGAAGAGACACTTGA
1 AGAGTCGAAAAGAAACTTGA
3184890 TATGCATAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.44, C:0.12, G:0.29, T:0.15
Consensus pattern (21 bp):
AGAGTCGAAAAGAAACTTGAG
Found at i:3185700 original size:115 final size:115
Alignment explanation
Indices: 3185498--3185727 Score: 460
Period size: 115 Copynumber: 2.0 Consensus size: 115
3185488 TCCGACGTTG
3185498 CAACGTTGAAGCCTACGGAATGGGTTGGCGGTGTTGTAAGTAAAAAGTACAAAATGTTAAAACCT
1 CAACGTTGAAGCCTACGGAATGGGTTGGCGGTGTTGTAAGTAAAAAGTACAAAATGTTAAAACCT
3185563 ATTGAATATGTTCTAATTGTGTAATTAATTTTGTTAGTCTATTGATTTTC
66 ATTGAATATGTTCTAATTGTGTAATTAATTTTGTTAGTCTATTGATTTTC
3185613 CAACGTTGAAGCCTACGGAATGGGTTGGCGGTGTTGTAAGTAAAAAGTACAAAATGTTAAAACCT
1 CAACGTTGAAGCCTACGGAATGGGTTGGCGGTGTTGTAAGTAAAAAGTACAAAATGTTAAAACCT
3185678 ATTGAATATGTTCTAATTGTGTAATTAATTTTGTTAGTCTATTGATTTTC
66 ATTGAATATGTTCTAATTGTGTAATTAATTTTGTTAGTCTATTGATTTTC
3185728 TCGCCTGGAC
Statistics
Matches: 115, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
115 115 1.00
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.37
Consensus pattern (115 bp):
CAACGTTGAAGCCTACGGAATGGGTTGGCGGTGTTGTAAGTAAAAAGTACAAAATGTTAAAACCT
ATTGAATATGTTCTAATTGTGTAATTAATTTTGTTAGTCTATTGATTTTC
Found at i:3186797 original size:19 final size:19
Alignment explanation
Indices: 3186773--3186821 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
3186763 AATGTAGGGT
3186773 TAATTTTGTATA-AGATTTA
1 TAATTTTGTATACA-ATTTA
3186792 TAATTTTGTATACAATTTA
1 TAATTTTGTATACAATTTA
3186811 TAATTTTGTAT
1 TAATTTTGTAT
3186822 GTGAATGTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
19 28 0.97
20 1 0.03
ACGTcount: A:0.35, C:0.02, G:0.08, T:0.55
Consensus pattern (19 bp):
TAATTTTGTATACAATTTA
Found at i:3187149 original size:15 final size:15
Alignment explanation
Indices: 3187129--3187167 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
3187119 GTCCAGTATG
3187129 GTTCCCAAACATAAA
1 GTTCCCAAACATAAA
*
3187144 GTTCCCAAACGTAAA
1 GTTCCCAAACATAAA
*
3187159 GTTTCCAAA
1 GTTCCCAAA
3187168 AAATAGGTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.41, C:0.26, G:0.10, T:0.23
Consensus pattern (15 bp):
GTTCCCAAACATAAA
Found at i:3188136 original size:199 final size:199
Alignment explanation
Indices: 3187288--3188144 Score: 931
Period size: 199 Copynumber: 4.3 Consensus size: 199
3187278 ATATCGGTTT
* * *
3187288 TATACTGGTTTTAT-ATGAGAATAGGTCTACATAATGTATCGACACTTTTGAAATTGGTGTCGAT
1 TATACCGGTTTTATGA-GAGAATAGGTCTACATAAAGTATCGACACTTTT-AAATTTGTGTCGAT
* * *
3187352 ACTTTTTGTCCAGAATGAATGCCCAAAATGGTGAACGCATAAAGTGTCTATACATTTATAAAAAG
64 ACTTTTTGTCCAGAAGGAATGCCCAAAATGGTGCACGCATAAAGTGTCGATACATTTATAAAAAG
*
3187417 TATCGATCCCAGAAACATCGAAACCCATAATTATAATGTAATAGGTAAATTTACAATATAACCGA
129 TATCGATCCCAGAAACATCGAAACCCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGA
* *
3187482 AATAAC
194 TATAAA
* * **
3187488 TATACCAGTTTTATGAGAGAATAGGTCTACATAATGTATCGACACTTATGGAATTTGTGTCGATA
1 TATACCGGTTTTATGAGAGAATAGGTCTACATAAAGTATCGACACTT-TTAAATTTGTGTCGATA
* * * * * *
3187553 CTGTTTGTCTAGAAGGAATGCCCAAAA--G-G---G----AAGTGTCGATAAATTTTTTAAAATT
65 CTTTTTGTCCAGAAGGAATGCCCAAAATGGTGCACGCATAAAGTGTCGATACATTTATAAAAAGT
* * * ** * *
3187608 ATTGAT-CCAGAGACATCAAAACCCATAATTATAATGTAATAGGT-AATGTTGTAATGTAACTGG
130 ATCGATCCCAGAAACATCGAAACCCATAATTATAATGTAATAGGTAAAT-TTACAATGTAACCGA
3187671 TATAAA
194 TATAAA
* * *
3187677 TATACCGGTTTTATGTA-AGAATAAGTCTACATAATGTATCGACACTTTTTAATTATGTGTCGAT
1 TATACCGGTTTTATG-AGAGAATAGGTCTACATAAAGTATCGACACTTTTAAATT-TGTGTCGAT
* * * *
3187741 ACATTTCGTCCAGAATGAATGCCCAAAAAAATGGTGCACGCATAAAGTGTCAATACATTTATAAA
64 ACTTTTTGTCCAGAAGGAATGCCC---AAAATGGTGCACGCATAAAGTGTCGATACATTTATAAA
* * * *
3187806 AAATATCGATCCCAGAAACATCGAAACCCATGATTATAATGTAATAGGTAATTTTTCAATGTAAC
126 AAGTATCGATCCCAGAAACATCGAAACCCATAATTATAATGTAATAGGTAAATTTACAATGTAAC
*
3187871 CGGTATAAA
191 CGATATAAA
* * *
3187880 TATACCGGTTTTATGCGAGAATAGGTCTAGA-AAA-TACATCGACACTTCTAGAATTTGTGTCGA
1 TATACCGGTTTTATGAGAGAATAGGTCTACATAAAGT--ATCGACACTTTTA-AATTTGTGTCGA
* * * * * *
3187943 TACTTTTTGTCTAGAAGGAAAG-CCAAAAGGGTGCACCCATTAAGTGTCGATACATTTTTAAAAA
63 TACTTTTTGTCCAGAAGGAATGCCCAAAATGGTGCACGCATAAAGTGTCGATACATTTATAAAAA
* * * * *
3188007 GTGTCGATCCCAAAAACATCGAAATCGATAATTATAATGTAATAGGTAAATTTCCAATGTAACCG
128 GTATCGATCCCAGAAACATCGAAACCCATAATTATAATGTAATAGGTAAATTTACAATGTAACCG
3188072 ATATAAA
193 ATATAAA
* ** * * * *
3188079 AATATTGGTTTTATGAGAAAATAGGTC-AGCAGAAAGTATTGACAATTGTTAAATTTGTGTCGAT
1 TATACCGGTTTTATGAGAGAATAGGTCTA-CATAAAGTATCGACACTT-TTAAATTTGTGTCGAT
3188143 AC
64 AC
3188145 CATTTTAAAA
Statistics
Matches: 550, Mismatches: 79, Indels: 57
0.80 0.12 0.08
Matches are distributed among these distances:
188 8 0.01
189 121 0.22
190 26 0.05
192 4 0.01
194 2 0.00
195 1 0.00
197 1 0.00
198 3 0.01
199 144 0.26
200 85 0.15
201 4 0.01
202 29 0.05
203 116 0.21
204 6 0.01
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (199 bp):
TATACCGGTTTTATGAGAGAATAGGTCTACATAAAGTATCGACACTTTTAAATTTGTGTCGATAC
TTTTTGTCCAGAAGGAATGCCCAAAATGGTGCACGCATAAAGTGTCGATACATTTATAAAAAGTA
TCGATCCCAGAAACATCGAAACCCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGATA
TAAA
Found at i:3191019 original size:24 final size:24
Alignment explanation
Indices: 3190974--3191021 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
3190964 ATGTAATTGG
* * *
3190974 AGTTTGAATTTTAATTTCAATTTT
1 AGTTTGAATTTCAATATAAATTTT
*
3190998 AGTTTGAGTTTCAATATAAATTTT
1 AGTTTGAATTTCAATATAAATTTT
3191022 GGCTCCACTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.31, C:0.04, G:0.10, T:0.54
Consensus pattern (24 bp):
AGTTTGAATTTCAATATAAATTTT
Found at i:3191867 original size:21 final size:21
Alignment explanation
Indices: 3191841--3192003 Score: 137
Period size: 21 Copynumber: 7.6 Consensus size: 21
3191831 CATATAAAAT
3191841 TGTCCCGAAGGACCACATATA
1 TGTCCCGAAGGACCACATATA
* * *
3191862 TGTCCCGAAGGACCGCGTAGAA
1 TGTCCCGAAGGACCACATA-TA
* *
3191884 TTGTCCTGAAGGACCACATAGAA
1 -TGTCCCGAAGGACCACATA-TA
* *
3191907 TTCTCCCTAAGGACCACATATA
1 -TGTCCCGAAGGACCACATATA
* * *
3191929 TGTTCCAAAGGACCAAATATA
1 TGTCCCGAAGGACCACATATA
* *
3191950 TGTCCCAAAGGACCGCATATA
1 TGTCCCGAAGGACCACATATA
** * *
3191971 TGTTTCAAAGGATCACATATA
1 TGTCCCGAAGGACCACATATA
*
3191992 TGTCCTGAAGGA
1 TGTCCCGAAGGA
3192004 TCGCGTAGAA
Statistics
Matches: 115, Mismatches: 25, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
21 77 0.67
22 2 0.02
23 36 0.31
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.23
Consensus pattern (21 bp):
TGTCCCGAAGGACCACATATA
Found at i:3191894 original size:23 final size:23
Alignment explanation
Indices: 3191838--3191926 Score: 94
Period size: 23 Copynumber: 4.0 Consensus size: 23
3191828 TGCCATATAA
*
3191838 AATTGTCCCGAAGGACCACATA-
1 AATTGTCCTGAAGGACCACATAG
* * * *
3191860 TA-TGTCCCGAAGGACCGCGTAG
1 AATTGTCCTGAAGGACCACATAG
3191882 AATTGTCCTGAAGGACCACATAG
1 AATTGTCCTGAAGGACCACATAG
*
3191905 AATTCTCCCT-AAGGACCACATA
1 AATTGT-CCTGAAGGACCACATA
3191927 TATGTTCCAA
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
21 17 0.30
22 2 0.04
23 34 0.61
24 3 0.05
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (23 bp):
AATTGTCCTGAAGGACCACATAG
Found at i:3194095 original size:16 final size:17
Alignment explanation
Indices: 3194074--3194112 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
3194064 ATATTTATGG
*
3194074 AAAATATT-TTGAGAGT
1 AAAATATTGATGAGAGT
3194090 AAAATATTGATGAGAGT
1 AAAATATTGATGAGAGT
3194107 ATAAAT
1 A-AAAT
3194113 GAGTCAAGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 8 0.40
17 8 0.40
18 4 0.20
ACGTcount: A:0.49, C:0.00, G:0.18, T:0.33
Consensus pattern (17 bp):
AAAATATTGATGAGAGT
Found at i:3196633 original size:183 final size:181
Alignment explanation
Indices: 3196274--3196641 Score: 711
Period size: 181 Copynumber: 2.0 Consensus size: 181
3196264 AGAAATTCAA
3196274 AAAG-AAGATAAGAGTGAAAATGATGAGTTTGAAAAAGAAATTGTTTGTGCAAGAGAGAGAGGGA
1 AAAGAAAGATAAGAGTGAAAATGATGAGTTTGAAAAAGAAATTGTTTGTGCAAGAGAGAGAGGGA
3196338 GTTCAATTTCTTTTTGCACTAACAACCTTAACCATTCTTCTTCTATTCTTGATTTCATTGTTGCA
66 GTTCAATTTCTTTTTGCACTAACAACCTTAACCATTCTTCTTCTATTCTTGATTTCATTGTTGCA
3196403 TGATGACGAGAAGAGCACTTCAAGAGACATTTCAAACACATTGCCAATCTT
131 TGATGACGAGAAGAGCACTTCAAGAGACATTTCAAACACATTGCCAATCTT
3196454 AAAGAAAGATAAGAGTGAAAATGATGAGTTTGAAAAAGAAATTGTTTGTGCAAGAGAGAGAGGGA
1 AAAGAAAGATAAGAGTGAAAATGATGAGTTTGAAAAAGAAATTGTTTGTGCAAGAGAGAGAGGGA
3196519 GTTCAATTTCTTTTTGCACTAACAACCTTAACCATTCTTCTTCTATTCTTGAATTTTCATTGTTG
66 GTTCAATTTCTTTTTGCACTAACAACCTTAACCATTCTTCTTCTATTCTTG-A-TTTCATTGTTG
3196584 CATGATGACGAGAAGAGCACTTCAAGAGACATTTCAAACACATTGCCAATCTT
129 CATGATGACGAGAAGAGCACTTCAAGAGACATTTCAAACACATTGCCAATCTT
3196637 AAAGA
1 AAAGA
3196642 TGATCGAACA
Statistics
Matches: 185, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
180 4 0.02
181 111 0.60
182 1 0.01
183 69 0.37
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (181 bp):
AAAGAAAGATAAGAGTGAAAATGATGAGTTTGAAAAAGAAATTGTTTGTGCAAGAGAGAGAGGGA
GTTCAATTTCTTTTTGCACTAACAACCTTAACCATTCTTCTTCTATTCTTGATTTCATTGTTGCA
TGATGACGAGAAGAGCACTTCAAGAGACATTTCAAACACATTGCCAATCTT
Found at i:3197497 original size:17 final size:17
Alignment explanation
Indices: 3197472--3197511 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
3197462 GTACGTTGTT
*
3197472 CATTAAAGCATGCATTG
1 CATTTAAGCATGCATTG
* *
3197489 CATTTAAGCATGTATTT
1 CATTTAAGCATGCATTG
3197506 CATTTA
1 CATTTA
3197512 GGGAAGTAGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (17 bp):
CATTTAAGCATGCATTG
Found at i:3197562 original size:30 final size:31
Alignment explanation
Indices: 3197523--3197580 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
3197513 GGAAGTAGTT
* *
3197523 CATTTATGCATCTAGTT-ATTTAATAAACTA
1 CATTCATGCATCTAGTTCATTGAATAAACTA
*
3197553 CATTCATGCATTTAGTTCATTGAATAAA
1 CATTCATGCATCTAGTTCATTGAATAAA
3197581 GTTATTTCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 15 0.62
31 9 0.38
ACGTcount: A:0.36, C:0.14, G:0.09, T:0.41
Consensus pattern (31 bp):
CATTCATGCATCTAGTTCATTGAATAAACTA
Found at i:3197591 original size:18 final size:18
Alignment explanation
Indices: 3197568--3197609 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
3197558 ATGCATTTAG
3197568 TTCATTGAATAAAGTTAT
1 TTCATTGAATAAAGTTAT
*
3197586 TTCATTGAATAATGTTAT
1 TTCATTGAATAAAGTTAT
3197604 TTCATT
1 TTCATT
3197610 AATCAAACTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.33, C:0.07, G:0.10, T:0.50
Consensus pattern (18 bp):
TTCATTGAATAAAGTTAT
Found at i:3205080 original size:27 final size:27
Alignment explanation
Indices: 3205041--3205118 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
3205031 GAATCAATAT
* *
3205041 TTTTTCATTTGCATTTGA-ATATTTACA
1 TTTTGCATCTGCATTT-ACATATTTACA
* *
3205068 TTTTGCATCTGCATTTACATCTTTGCA
1 TTTTGCATCTGCATTTACATATTTACA
*
3205095 TTTTGCATCTGCATTT-CATTTTTA
1 TTTTGCATCTGCATTTACATATTTA
3205119 AGCATTTTCA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
26 7 0.16
27 37 0.84
ACGTcount: A:0.21, C:0.17, G:0.09, T:0.54
Consensus pattern (27 bp):
TTTTGCATCTGCATTTACATATTTACA
Found at i:3205109 original size:13 final size:13
Alignment explanation
Indices: 3205066--3205110 Score: 56
Period size: 13 Copynumber: 3.4 Consensus size: 13
3205056 TGAATATTTA
3205066 CATTTTGCATCTG
1 CATTTTGCATCTG
*
3205079 CA-TTTACATCTTTG
1 CATTTTGCATC--TG
3205093 CATTTTGCATCTG
1 CATTTTGCATCTG
3205106 CATTT
1 CATTT
3205111 CATTTTTAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
12 7 0.26
13 9 0.33
14 4 0.15
15 7 0.26
ACGTcount: A:0.18, C:0.22, G:0.11, T:0.49
Consensus pattern (13 bp):
CATTTTGCATCTG
Found at i:3208962 original size:9 final size:9
Alignment explanation
Indices: 3208944--3208990 Score: 69
Period size: 9 Copynumber: 5.3 Consensus size: 9
3208934 ACAATTGAAG
*
3208944 AAAAGGAAA
1 AAAAGAAAA
3208953 AAAAG-AAA
1 AAAAGAAAA
3208961 AAAAGAAAA
1 AAAAGAAAA
*
3208970 AAAAGAAGA
1 AAAAGAAAA
3208979 AAAAGAAAA
1 AAAAGAAAA
3208988 AAA
1 AAA
3208991 CAAAGAAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
8 8 0.23
9 27 0.77
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (9 bp):
AAAAGAAAA
Found at i:3208970 original size:17 final size:18
Alignment explanation
Indices: 3208940--3209001 Score: 85
Period size: 18 Copynumber: 3.6 Consensus size: 18
3208930 TATTACAATT
*
3208940 GAAG-AAAAGGAAAAAAA
1 GAAGAAAAAGAAAAAAAA
3208957 GAA-AAAAAGAAAAAAAA
1 GAAGAAAAAGAAAAAAAA
3208974 GAAGAAAAAGAAAAAAACA
1 GAAGAAAAAGAAAAAAA-A
3208993 -AAGAAAAAG
1 GAAGAAAAAG
3209002 GGACTAGAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
17 18 0.44
18 22 0.54
19 1 0.02
ACGTcount: A:0.81, C:0.02, G:0.18, T:0.00
Consensus pattern (18 bp):
GAAGAAAAAGAAAAAAAA
Found at i:3208973 original size:18 final size:18
Alignment explanation
Indices: 3208950--3209000 Score: 68
Period size: 17 Copynumber: 2.7 Consensus size: 18
3208940 GAAGAAAAGG
3208950 AAAAAAAGAAAAAAAG-A
1 AAAAAAAGAAAAAAAGAA
3208967 AAAAAAAGAAGAAAAAGAAA
1 AAAAAAAGAA-AAAAAG-AA
3208987 AAAACAAAGAAAAA
1 AAAA-AAAGAAAAA
3209001 GGGACTAGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
17 10 0.33
18 6 0.20
20 8 0.27
21 6 0.20
ACGTcount: A:0.86, C:0.02, G:0.12, T:0.00
Consensus pattern (18 bp):
AAAAAAAGAAAAAAAGAA
Found at i:3208999 original size:9 final size:8
Alignment explanation
Indices: 3208944--3208990 Score: 67
Period size: 8 Copynumber: 5.6 Consensus size: 8
3208934 ACAATTGAAG
*
3208944 AAAAGGAA
1 AAAAAGAA
3208952 AAAAAGAA
1 AAAAAGAA
3208960 AAAAAGAAA
1 AAAAAG-AA
3208969 AAAAAGAA
1 AAAAAGAA
3208977 GAAAAAGAA
1 -AAAAAGAA
3208986 AAAAA
1 AAAAA
3208991 CAAAGAAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
8 20 0.56
9 16 0.44
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (8 bp):
AAAAAGAA
Found at i:3210054 original size:32 final size:32
Alignment explanation
Indices: 3210013--3210096 Score: 132
Period size: 32 Copynumber: 2.6 Consensus size: 32
3210003 AAGCAAAAGA
* * *
3210013 GGGCATCTTTGAAGATTCAACATCAAATGTTT
1 GGGCATCTTTGGAGATTCAACATCAAATATTG
3210045 GGGCATCTTTGGAGATTCAACATCAAATATTG
1 GGGCATCTTTGGAGATTCAACATCAAATATTG
*
3210077 GGGCATCTTTGGATATTCAA
1 GGGCATCTTTGGAGATTCAA
3210097 TATCCTGATG
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 48 1.00
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.33
Consensus pattern (32 bp):
GGGCATCTTTGGAGATTCAACATCAAATATTG
Found at i:3210671 original size:128 final size:128
Alignment explanation
Indices: 3210443--3210983 Score: 486
Period size: 128 Copynumber: 4.2 Consensus size: 128
3210433 TACGGATGGC
* * * * *
3210443 AGATCTCCTCATCACGTAGGAGCCGTGTCACCCCAGATAACTAGCCGTCCTCATCACGTAGGAA-
1 AGATCTCCTCATTATGTAGGAGCCGTGTCAACCCAGATAACCAGCCATCCTCATCACGTAGGAAC
* * * *
3210507 TCATGTTATCACCTTTAGATGGCCAGAACTCTTCATCACACATGAGTCGTGTCATCAACTGACT
66 T-GTGTTATCGCCTTTAGATGGCCAGAACTCTTCATCACGCATGAGTCGTGTCATCACCTGACT
* * * *
3210571 AGATCTCCTCATTATGTAAGAGCTGTGTCAACCCAGATAGCCAGCCATCCTTATCACGTAGGAAC
1 AGATCTCCTCATTATGTAGGAGCCGTGTCAACCCAGATAACCAGCCATCCTCATCACGTAGGAAC
* * * * * ** *
3210636 TGTGTTATCGCCTTTAGATGG-CATG-CCGTCCTCATCGCGTAGGAACCGTGTCATCACCCGACT
66 TGTGTTATCGCCTTTAGATGGCCA-GAAC-TCTTCATCACGCATGAGTCGTGTCATCACCTGACT
* * *
3210699 AGATTTCCTCATTATGTAGGAACCGTGTCACCCCAGATAACCAGCCATCCTCATCACGTAGGAAC
1 AGATCTCCTCATTATGTAGGAGCCGTGTCAACCCAGATAACCAGCCATCCTCATCACGTAGGAAC
* * * * *
3210764 CGAGTTATCAG-CTTTAGATGGCCAGAACTATTCATCACGGATGAGTTGTGTCATCACCTGACCT
66 TGTGTTATC-GCCTTTAGATGGCCAGAACTCTTCATCACGCATGAGTCGTGTCATCACCTGA-CT
* *** * ** * *
3210828 -GATCTCCTCATTATGTAGGAGTCGTGTCAATCTTTGATAAACA-AAACTCTTCATCACGTATGA
1 AGATCTCCTCATTATGTAGGAGCCGTGTCAA-CCCAGATAACCAGCCA-TCCTCATCACGTAGGA
* * ** * *
3210891 GCTGTGTTATCACCTTTCCTAAAGATGGCCAAGAACTCTTCATTGCGTATAAG-CAGTGTCATC-
64 ACTGTGTTATCGCC-TT--T--AGATGGCC-AGAACTCTTCATCACGCATGAGTC-GTGTCATCA
3210954 CTCTGACT
122 C-CTGACT
*
3210962 AGATTTCCTCATTATGTAGGAG
1 AGATCTCCTCATTATGTAGGAG
3210984 TTTTGTCACC
Statistics
Matches: 331, Mismatches: 63, Indels: 31
0.78 0.15 0.07
Matches are distributed among these distances:
127 3 0.01
128 227 0.69
129 38 0.11
130 2 0.01
132 1 0.00
134 11 0.03
135 49 0.15
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (128 bp):
AGATCTCCTCATTATGTAGGAGCCGTGTCAACCCAGATAACCAGCCATCCTCATCACGTAGGAAC
TGTGTTATCGCCTTTAGATGGCCAGAACTCTTCATCACGCATGAGTCGTGTCATCACCTGACT
Found at i:3213567 original size:16 final size:17
Alignment explanation
Indices: 3213533--3213571 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
3213523 GCAGACCAAC
*
3213533 TTTTGTCTTAAAAAATG
1 TTTTTTCTTAAAAAATG
*
3213550 TTTTTTCTT-AAAATTG
1 TTTTTTCTTAAAAAATG
3213566 TTTTTT
1 TTTTTT
3213572 AAAAGACGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 12 0.60
17 8 0.40
ACGTcount: A:0.26, C:0.05, G:0.08, T:0.62
Consensus pattern (17 bp):
TTTTTTCTTAAAAAATG
Found at i:3215694 original size:19 final size:19
Alignment explanation
Indices: 3215670--3215706 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
3215660 CAACACCTAG
3215670 GACAAGAGAGACGACAACC
1 GACAAGAGAGACGACAACC
* *
3215689 GACAAGGGAGATGACAAC
1 GACAAGAGAGACGACAAC
3215707 GGAGGCATCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.46, C:0.22, G:0.30, T:0.03
Consensus pattern (19 bp):
GACAAGAGAGACGACAACC
Found at i:3215781 original size:17 final size:17
Alignment explanation
Indices: 3215746--3215781 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
3215736 AAGATTAAGG
*
3215746 TTAGGGATTTGAGATTT
1 TTAGGGATTTGAGACTT
*
3215763 TTAGGGATTTGTGACTT
1 TTAGGGATTTGAGACTT
3215780 TT
1 TT
3215782 TTTTTATAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.19, C:0.03, G:0.28, T:0.50
Consensus pattern (17 bp):
TTAGGGATTTGAGACTT
Found at i:3216353 original size:31 final size:29
Alignment explanation
Indices: 3216297--3216368 Score: 83
Period size: 31 Copynumber: 2.4 Consensus size: 29
3216287 AGATATTTAA
*
3216297 AAAGATATATTTTAAAGTGATAATAAAAAT
1 AAAGATATATTTTAAAGTGAAAAT-AAAAT
*
3216327 AAAGTATATATTTTACAA-TTAAAATAAAAT
1 AAAG-ATATATTTTA-AAGTGAAAATAAAAT
*
3216357 AAAAATATATTT
1 AAAGATATATTT
3216369 AATAAATTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
29 8 0.22
30 12 0.32
31 15 0.41
32 2 0.05
ACGTcount: A:0.57, C:0.01, G:0.06, T:0.36
Consensus pattern (29 bp):
AAAGATATATTTTAAAGTGAAAATAAAAT
Found at i:3216374 original size:20 final size:21
Alignment explanation
Indices: 3216349--3216393 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
3216339 TTACAATTAA
*
3216349 AATAAAATAA-AAATATATTT
1 AATAAAATAAGAAAAATATTT
*
3216369 AATAAATTAAGAAAAATATTT
1 AATAAAATAAGAAAAATATTT
3216390 AATA
1 AATA
3216394 TCTTAAAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 9 0.41
21 13 0.59
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (21 bp):
AATAAAATAAGAAAAATATTT
Found at i:3216384 original size:29 final size:29
Alignment explanation
Indices: 3216321--3216386 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 29
3216311 AAGTGATAAT
*
3216321 AAAAATAAAGTATATATTTTACAATTAAA
1 AAAAATAAAGAATATATTTTACAATTAAA
*
3216350 ATAAAATAAA-AATATATTTAATA-AATTAAG
1 A-AAAATAAAGAATATATTT--TACAATTAAA
3216380 AAAAATA
1 AAAAATA
3216387 TTTAATATCT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
29 15 0.47
30 15 0.47
31 2 0.06
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.32
Consensus pattern (29 bp):
AAAAATAAAGAATATATTTTACAATTAAA
Found at i:3220651 original size:32 final size:30
Alignment explanation
Indices: 3220609--3220681 Score: 119
Period size: 32 Copynumber: 2.4 Consensus size: 30
3220599 AGAGTCAAGG
*
3220609 GTTACCTATGTCCTTCGGGACATATGGACAA
1 GTTACCTATGTCCTTCGGGACAAATGGAC-A
3220640 GATTACCTATGTCCTTCGGGACAAATGGACA
1 G-TTACCTATGTCCTTCGGGACAAATGGACA
3220671 GTTACCTATGT
1 GTTACCTATGT
3220682 TCGTTGAAAC
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
30 10 0.25
31 3 0.08
32 27 0.68
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (30 bp):
GTTACCTATGTCCTTCGGGACAAATGGACA
Found at i:3220698 original size:30 final size:32
Alignment explanation
Indices: 3220610--3220698 Score: 94
Period size: 32 Copynumber: 2.8 Consensus size: 32
3220600 GAGTCAAGGG
**
3220610 TTACCTATGTCCTTCGGGACATATGGACAAGA
1 TTACCTATGTCCTTCGAAACATATGGACAAGA
** *
3220642 TTACCTATGTCCTTCGGGACAAATGGAC-AG-
1 TTACCTATGTCCTTCGAAACATATGGACAAGA
*
3220672 TTACCTATGTTCGTT-GAAACATATGGA
1 TTACCTATG-TCCTTCGAAACATATGGA
3220699 TAGTGGTCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
30 18 0.35
31 6 0.12
32 27 0.53
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.30
Consensus pattern (32 bp):
TTACCTATGTCCTTCGAAACATATGGACAAGA
Found at i:3221111 original size:23 final size:23
Alignment explanation
Indices: 3221048--3221101 Score: 99
Period size: 23 Copynumber: 2.3 Consensus size: 23
3221038 GCTTTTTATA
3221048 TGATATGATAGTATTAATTGCAT
1 TGATATGATAGTATTAATTGCAT
*
3221071 TGATATGATAGTATTAATTGTAT
1 TGATATGATAGTATTAATTGCAT
3221094 TGATATGA
1 TGATATGA
3221102 GTAGAGTAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.35, C:0.02, G:0.19, T:0.44
Consensus pattern (23 bp):
TGATATGATAGTATTAATTGCAT
Found at i:3226626 original size:15 final size:15
Alignment explanation
Indices: 3226606--3226646 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
3226596 TCAAGTCTTA
3226606 GATATCAATGATATG
1 GATATCAATGATATG
3226621 GATATCAATGATATG
1 GATATCAATGATATG
*
3226636 GATAACAATGA
1 GATATCAATGA
3226647 CACTGATCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.44, C:0.07, G:0.20, T:0.29
Consensus pattern (15 bp):
GATATCAATGATATG
Found at i:3229667 original size:225 final size:223
Alignment explanation
Indices: 3229235--3229923 Score: 679
Period size: 225 Copynumber: 3.1 Consensus size: 223
3229225 TTGACTGTAA
* * * * * * * *
3229235 TTTGTCTTAACTCAACGGTGAGGAGCCATTTTCCAATCTAATC-TATTTGAAGTTAATCTTAACT
1 TTTGGCTTAACTCAACGGTGAGGAGCCACTTTCCAGTCAAATCGT-TTTAAAGTCAATCTCAAAT
* * * * *** * *
3229299 CCAC--AACGAAGGACATTGTGTTTGAAAGCCAATTCAAAATCGACAT-CATTATAGCATAACTC
65 CCACGGAA-G-AGGATATTGGGTTCGAAAGTCAATTTGGAATC-AAATACATTATAGCTTAACTC
* * * *
3229361 AACGGTGAAGAACTAGTTTCCAATTGAAGTTTTCAGGCCATGTTTCAACTTCACGATGAAGAATA
127 AACGGCG-AGAACTAGTTTCCAATTGAAGTTTTCAGG-CAGGTTTCAACTTCACGACGAAGGATA
** *
3229426 CTTGACTAGGAAGTACATCAAGAACCGACTGCAT
190 CTTGACCCGAAAGTACATCAAGAACCGACTGCAT
* * * *
3229460 TTTGGCTTAACTTAGCGGTGATGATCCACTTTCCAGTCAAATC-TTTTCAAAGTCAATCTCAAAT
1 TTTGGCTTAACTCAACGGTGAGGAGCCACTTTCCAGTCAAATCGTTTT-AAAGTCAATCTCAAAT
* *
3229524 CCACGGAAGAGGATATTGGGTTCGAAA-TCCAATTTGGAGTCAAATACATTCTAGCTTAACTCAA
65 CCACGGAAGAGGATATTGGGTTCGAAAGT-CAATTTGGAATCAAATACATTATAGCTTAACTCAA
* * * *
3229588 CGACGAGAAGCTAGTTTCCAATTGAAGTTTTCAGGCTAGGCTTCAACTTAATGACGAAGGATACT
129 CGGCGAGAA-CTAGTTTCCAATTGAAGTTTTCAGGC-AGGTTTCAACTTCACGACGAAGGATACT
*
3229653 TGACCCGAAAGTACATCAAGAACTGACTGCAT
192 TGACCCGAAAGTACATCAAGAACCGACTGCAT
* * * *
3229685 TTTGGCTTAACTCAACTGTGAGGAGCCATTTTCCAGTCAAATCGTTTTGAAGTTAATCTCAAATC
1 TTTGGCTTAACTCAACGGTGAGGAGCCACTTTCCAGTCAAATCGTTTTAAAGTCAATCTCAAATC
* ** * ** * ** **
3229750 CATGGTGGAGGATATTGGGTTTGAAAGTCAATTTGGAATTGATTGTATTATAGCTTAACTCAGTG
66 CACGGAAGAGGATATTGGGTTCGAAAGTCAATTTGGAATCAAATACATTATAGCTTAACTCAACG
* * * * * * * *
3229815 GGGAGGAACTAGTTTCTAGTTAAAGTTTTTAAGACAGGTTTCAACTTCACGACAAATGATACTTG
131 GCGA-GAACTAGTTTCCAATTGAAG-TTTTCAGGCAGGTTTCAACTTCACGACGAAGGATACTTG
* *
3229880 ACCCGAAAGCACATCAAGAACCAACTGCAT
194 ACCCGAAAGTACATCAAGAACCGACTGCAT
*
3229910 TTTGCCTTAACTCA
1 TTTGGCTTAACTCA
3229924 GTTACGGTGA
Statistics
Matches: 381, Mismatches: 72, Indels: 22
0.80 0.15 0.05
Matches are distributed among these distances:
224 11 0.03
225 352 0.92
226 16 0.04
227 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (223 bp):
TTTGGCTTAACTCAACGGTGAGGAGCCACTTTCCAGTCAAATCGTTTTAAAGTCAATCTCAAATC
CACGGAAGAGGATATTGGGTTCGAAAGTCAATTTGGAATCAAATACATTATAGCTTAACTCAACG
GCGAGAACTAGTTTCCAATTGAAGTTTTCAGGCAGGTTTCAACTTCACGACGAAGGATACTTGAC
CCGAAAGTACATCAAGAACCGACTGCAT
Found at i:3229938 original size:225 final size:220
Alignment explanation
Indices: 3229345--3230017 Score: 631
Period size: 225 Copynumber: 3.0 Consensus size: 220
3229335 AAATCGACAT
* * * * * *
3229345 CATTATAGCATAACTCAACGGTGAAGAACTAGTTTCCAATTGAAGTTTTCAGGCCATGTTTCAAC
1 CATTATAGCTTAACTCAACGGCG-AGAACTAGTTTCCAATTGAAGTTTTTAAGACAGGTTTCAAC
* ** * *
3229410 TTCACGATGAAGAATACTTGACTAGGAAGTACATCAAGAACCGACTGCATTTTGGCTTAACTTAG
65 TTCACGACGAAG-ATACTTGACCCGAAAGTACATCAAGAACCGACTGCATTTTGGCTTAACTCAG
* * * **
3229475 -CGGTGATGATCCACTTTCCAGTCAAATCTTTTCAAAGTCAATCTCAAATCCACGGAAGAGGATA
129 TCGGTGA-G--CCATTTTCCAGTCAAATCTTTT-GAAGTCAATCTCAAATCCATGGTGGAGGATA
*
3229539 TTGGGTTCGAAATCCAATTTGGAGTCAAATA
190 TTGGGTTCGAAATCCAATTTGGAATCAAATA
* * * * *
3229570 CATTCTAGCTTAACTCAACGACGAGAAGCTAGTTTCCAATTGAAG-TTTTCAGGCTAGGCTTCAA
1 CATTATAGCTTAACTCAACGGCGAGAA-CTAGTTTCCAATTGAAGTTTTTAAGAC-AGGTTTCAA
* * *
3229634 CTTAATGACGAAGGATACTTGACCCGAAAGTACATCAAGAACTGACTGCATTTTGGCTTAACTCA
64 CTTCACGACGAA-GATACTTGACCCGAAAGTACATCAAGAACCGACTGCATTTTGGCTTAACTC-
*
3229699 ACTGT-GAG-GAGCCATTTTCCAGTCAAATCGTTTTGAAGTTAATCTCAAATCCATGGTGGAGGA
127 A--GTCG-GTGAGCCATTTTCCAGTCAAATC-TTTTGAAGTCAATCTCAAATCCATGGTGGAGGA
* ** * *
3229762 TATTGGGTTTGAAAGT-CAATTTGGAATTGATTG
188 TATTGGGTTCGAAA-TCCAATTTGGAATCAAATA
* ** * * * *
3229795 TATTATAGCTTAACTCAGTGGGGAGGAACTAGTTTCTAGTTAAAGTTTTTAAGACAGGTTTCAAC
1 CATTATAGCTTAACTCAACGGCGA-GAACTAGTTTCCAATTGAAGTTTTTAAGACAGGTTTCAAC
* * * *
3229860 TTCACGACAAATGATACTTGACCCGAAAGCACATCAAGAACCAACTGCATTTTGCCTTAACTCAG
65 TTCACGACGAA-GATACTTGACCCGAAAGTACATCAAGAACCGACTGCATTTTGGCTTAACTCAG
** * * * * *
3229925 TTACGGTGAGCCATCTTT-CAAACAGATCTTTTTGAAGTCAATTTCAACTCCAT-ATGAAGGATA
129 -T-CGGTGAGCCAT-TTTCCAGTCAAATC-TTTTGAAGTCAATCTCAAATCCATGGTGGAGGATA
* * **
3229988 TTGGGTTCTAAAACCAATTCAGAATCAAAT
190 TTGGGTTCGAAATCCAATTTGGAATCAAAT
3230018 GTTGTCTAAC
Statistics
Matches: 363, Mismatches: 67, Indels: 37
0.78 0.14 0.08
Matches are distributed among these distances:
222 1 0.00
223 1 0.00
224 40 0.11
225 295 0.81
226 20 0.06
227 1 0.00
228 4 0.01
229 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (220 bp):
CATTATAGCTTAACTCAACGGCGAGAACTAGTTTCCAATTGAAGTTTTTAAGACAGGTTTCAACT
TCACGACGAAGATACTTGACCCGAAAGTACATCAAGAACCGACTGCATTTTGGCTTAACTCAGTC
GGTGAGCCATTTTCCAGTCAAATCTTTTGAAGTCAATCTCAAATCCATGGTGGAGGATATTGGGT
TCGAAATCCAATTTGGAATCAAATA
Found at i:3230913 original size:3 final size:3
Alignment explanation
Indices: 3230905--3231067 Score: 55
Period size: 3 Copynumber: 52.0 Consensus size: 3
3230895 ATTTTATCTT
** * *
3230905 TTA TTA TTA TTA TTTA TTA TTA CCAA TTA TCA TTAA TTA CTA CTTA TTA
1 TTA TTA TTA TTA -TTA TTA TTA -TTA TTA TTA TT-A TTA TTA -TTA TTA
* *** * *
3230954 TTAA TTA TTA TTA -TA TACA TTA TTA TTA CCC TTA TTA GTA TTA TACA
1 TT-A TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* * * *
3231001 TAA TTA TTA -TA TAA TTTA ATA TTA -CA TTA TTA TCTA TT- TTAA TTA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA T-TA TTA TT-A TTA
* *
3231046 TTA CTA TCTA TTA TTA GTA TTA
1 TTA TTA T-TA TTA TTA TTA TTA
3231068 CTTTTAATTA
Statistics
Matches: 114, Mismatches: 31, Indels: 30
0.65 0.18 0.17
Matches are distributed among these distances:
2 7 0.06
3 81 0.71
4 26 0.23
ACGTcount: A:0.36, C:0.09, G:0.01, T:0.54
Consensus pattern (3 bp):
TTA
Found at i:3230914 original size:13 final size:12
Alignment explanation
Indices: 3230888--3230926 Score: 53
Period size: 13 Copynumber: 3.2 Consensus size: 12
3230878 AATTTCATTG
3230888 TATTTTTATT-T
1 TATTTTTATTAT
3230899 TATCTTTTATTAT
1 TAT-TTTTATTAT
3230912 TATTATTTATTAT
1 TATT-TTTATTAT
3230925 TA
1 TA
3230927 CCAATTATCA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 3 0.12
12 8 0.32
13 14 0.56
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.72
Consensus pattern (12 bp):
TATTTTTATTAT
Found at i:3230996 original size:43 final size:43
Alignment explanation
Indices: 3230949--3231048 Score: 109
Period size: 43 Copynumber: 2.3 Consensus size: 43
3230939 AATTACTACT
* * *
3230949 TATTATTAATTATTATTATATACA-TTATTATTACCCTTATTA-G
1 TATTATTAATTATTATTATATA-ATTTAATATTA-CATTATTATC
*
3230992 TATTA-TACATAATTATTATATAATTTAATATTACATTATTATC
1 TATTATTA-ATTATTATTATATAATTTAATATTACATTATTATC
3231035 TATT-TTAATTATTA
1 TATTATTAATTATTA
3231049 CTATCTATTA
Statistics
Matches: 48, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
42 16 0.33
43 32 0.67
ACGTcount: A:0.38, C:0.07, G:0.01, T:0.54
Consensus pattern (43 bp):
TATTATTAATTATTATTATATAATTTAATATTACATTATTATC
Found at i:3231030 original size:23 final size:25
Alignment explanation
Indices: 3231003--3231059 Score: 73
Period size: 23 Copynumber: 2.3 Consensus size: 25
3230993 ATTATACATA
3231003 ATTATTATATAATTTAA-TATTAC-
1 ATTATTATATAATTTAATTATTACT
* *
3231026 ATTATTATCTATTTTAATTATTACT
1 ATTATTATATAATTTAATTATTACT
3231051 ATCTATTAT
1 AT-TATTAT
3231060 TAGTATTACT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 15 0.52
24 6 0.21
25 2 0.07
26 6 0.21
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56
Consensus pattern (25 bp):
ATTATTATATAATTTAATTATTACT
Found at i:3231066 original size:19 final size:19
Alignment explanation
Indices: 3231026--3231069 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
3231016 TTAATATTAC
* *
3231026 ATTATTATCTATTTTAATT
1 ATTACTATCTATTTTAAGT
3231045 ATTACTATCTATTATT-AGT
1 ATTACTATCTATT-TTAAGT
3231064 ATTACT
1 ATTACT
3231070 TTTAATTATC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 20 0.91
20 2 0.09
ACGTcount: A:0.32, C:0.09, G:0.02, T:0.57
Consensus pattern (19 bp):
ATTACTATCTATTTTAAGT
Found at i:3233370 original size:16 final size:15
Alignment explanation
Indices: 3233351--3233380 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
3233341 TTCATATTAT
3233351 TAATTATATTTAATAC
1 TAATTATA-TTAATAC
3233367 TAATTATATTAATA
1 TAATTATATTAATA
3233381 AATTGCAGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATATTAATAC
Found at i:3233876 original size:39 final size:39
Alignment explanation
Indices: 3233822--3233996 Score: 242
Period size: 39 Copynumber: 4.5 Consensus size: 39
3233812 CAAGTCAAAT
* * *
3233822 ATATGCACCGTAGTGCTTACATATAAGGTTGTGCCCACC
1 ATATGCACCGAAGTGCTTACACATAAGGTCGTGCCCACC
*
3233861 ATATGCACCGAAGTGCTTACACACAAGGTCGTGCCCACC
1 ATATGCACCGAAGTGCTTACACATAAGGTCGTGCCCACC
* * * *
3233900 ATTTGCACCGAAGTGCTTACAAATAAGATCGTTCCCACC
1 ATATGCACCGAAGTGCTTACACATAAGGTCGTGCCCACC
** *
3233939 ATATGCACTAAAGTGCTTACACATAAGGTCATGCCCACC
1 ATATGCACCGAAGTGCTTACACATAAGGTCGTGCCCACC
*
3233978 ATATGCACCGAAGTACTTA
1 ATATGCACCGAAGTGCTTA
3233997 ATCGATATGC
Statistics
Matches: 117, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 117 1.00
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (39 bp):
ATATGCACCGAAGTGCTTACACATAAGGTCGTGCCCACC
Found at i:3234256 original size:34 final size:37
Alignment explanation
Indices: 3234212--3234313 Score: 158
Period size: 34 Copynumber: 2.8 Consensus size: 37
3234202 TTTCGTCCTA
3234212 CTAGGATTCAAACTCCTAAAAATAGGATAGA-A-TTT
1 CTAGGATTCAAACTCCTAAAAATAGGATAGACATTTT
*
3234247 -TAGGATTCAAACTTCTAAAAATAGGATA-ACATTTT
1 CTAGGATTCAAACTCCTAAAAATAGGATAGACATTTT
3234282 GCTAGGATTCAAACTCCTAAAAATAGGATAGA
1 -CTAGGATTCAAACTCCTAAAAATAGGATAGA
3234314 GTTCTACTAA
Statistics
Matches: 60, Mismatches: 2, Indels: 7
0.87 0.03 0.10
Matches are distributed among these distances:
33 1 0.02
34 28 0.47
35 3 0.05
37 27 0.45
38 1 0.02
ACGTcount: A:0.43, C:0.14, G:0.15, T:0.28
Consensus pattern (37 bp):
CTAGGATTCAAACTCCTAAAAATAGGATAGACATTTT
Found at i:3234339 original size:37 final size:37
Alignment explanation
Indices: 3234209--3234347 Score: 160
Period size: 37 Copynumber: 3.8 Consensus size: 37
3234199 ATTTTTCGTC
3234209 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
*
3234246 -T--TAGGATTCAAACTTCTAAAAATAGGATA-ACATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGA-ATT
* * *
3234280 TTGCTAGGATTCAAACTCCTAAAAATAGGATAGAGTT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
* * * * *
3234317 CTACTAAGATTTAAATTTCTAAAGATAGGAT
1 CTACTAGGATTCAAACTCCTAAAAATAGGAT
3234348 CCACAAGCAC
Statistics
Matches: 87, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
33 1 0.01
34 30 0.34
35 1 0.01
36 1 0.01
37 53 0.61
38 1 0.01
ACGTcount: A:0.42, C:0.13, G:0.14, T:0.31
Consensus pattern (37 bp):
CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
Found at i:3234743 original size:18 final size:17
Alignment explanation
Indices: 3234704--3234746 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
3234694 ATTATATGGA
3234704 TATT-TTATTCATTTAT
1 TATTATTATTCATTTAT
*
3234720 TTTTATTATTCATGTTAT
1 TATTATTATTCAT-TTAT
3234738 TATTATTAT
1 TATTATTAT
3234747 ATGTATATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 3 0.13
17 8 0.35
18 12 0.52
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (17 bp):
TATTATTATTCATTTAT
Found at i:3237711 original size:8 final size:8
Alignment explanation
Indices: 3237698--3237736 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
3237688 GAATATTTCA
*
3237698 TGCATTCT
1 TGCATTTT
3237706 TGCA-TTT
1 TGCATTTT
3237713 TGCATTTT
1 TGCATTTT
*
3237721 TGCCTTTT
1 TGCATTTT
3237729 TGCATTTT
1 TGCATTTT
3237737 CATCTACATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
7 6 0.22
8 21 0.78
ACGTcount: A:0.10, C:0.18, G:0.13, T:0.59
Consensus pattern (8 bp):
TGCATTTT
Found at i:3238881 original size:9 final size:10
Alignment explanation
Indices: 3238863--3238892 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
3238853 AGAAAAGAAG
*
3238863 CAAAAAAAAA
1 CAAAGAAAAA
3238873 CAAAGAAAAA
1 CAAAGAAAAA
3238883 CAAAGAAAAA
1 CAAAGAAAAA
3238893 AGAGAAACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.83, C:0.10, G:0.07, T:0.00
Consensus pattern (10 bp):
CAAAGAAAAA
Found at i:3238908 original size:33 final size:32
Alignment explanation
Indices: 3238842--3238927 Score: 86
Period size: 33 Copynumber: 2.6 Consensus size: 32
3238832 AGATCCAATC
3238842 AAGAAGAAAAAAGAAAAGAAGCAAAAAAAAAC-A
1 AAGAA-AAAAAAGAAAA-AAGCAAAAAAAAACAA
*
3238875 AAGAAAAACAAAGAAAAAAG-AGAAACAAGAACAA
1 AAGAAAAA-AAAGAAAAAAGCA-AAA-AAAAACAA
*
3238909 AAGGAAAAAAAGGAAAAAA
1 AA-GAAAAAAAAGAAAAAA
3238928 ACAAGAATCA
Statistics
Matches: 46, Mismatches: 2, Indels: 9
0.81 0.04 0.16
Matches are distributed among these distances:
31 1 0.02
32 9 0.20
33 18 0.39
34 12 0.26
35 6 0.13
ACGTcount: A:0.78, C:0.06, G:0.16, T:0.00
Consensus pattern (32 bp):
AAGAAAAAAAAGAAAAAAGCAAAAAAAAACAA
Found at i:3238915 original size:16 final size:17
Alignment explanation
Indices: 3238846--3238927 Score: 59
Period size: 17 Copynumber: 4.9 Consensus size: 17
3238836 CCAATCAAGA
3238846 AGAAA-AAAGAAAAGAAG
1 AGAAACAAAGAAAA-AAG
*
3238863 CA-AAA-AAA-AACAAAG
1 -AGAAACAAAGAAAAAAG
*
3238878 AAAAACAAAGAAAAAAG
1 AGAAACAAAGAAAAAAG
3238895 AGAAAC-AAGAACAAAAG
1 AGAAACAAAGAA-AAAAG
*
3238912 -GAAAAAAAGGAAAAAA
1 AGAAACAAA-GAAAAAA
3238928 ACAAGAATCA
Statistics
Matches: 54, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
14 1 0.02
15 6 0.11
16 15 0.28
17 28 0.52
18 4 0.07
ACGTcount: A:0.78, C:0.06, G:0.16, T:0.00
Consensus pattern (17 bp):
AGAAACAAAGAAAAAAG
Found at i:3239606 original size:22 final size:22
Alignment explanation
Indices: 3239578--3239632 Score: 110
Period size: 22 Copynumber: 2.5 Consensus size: 22
3239568 GCTATCCCAT
3239578 CAAACCTTTGAGCATCAAATGC
1 CAAACCTTTGAGCATCAAATGC
3239600 CAAACCTTTGAGCATCAAATGC
1 CAAACCTTTGAGCATCAAATGC
3239622 CAAACCTTTGA
1 CAAACCTTTGA
3239633 CCAAACACAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.36, C:0.27, G:0.13, T:0.24
Consensus pattern (22 bp):
CAAACCTTTGAGCATCAAATGC
Found at i:3240058 original size:18 final size:18
Alignment explanation
Indices: 3240035--3240070 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
3240025 TCAACATCAA
* *
3240035 ATATTGGGGCATTTTTGG
1 ATATTGAGGCATCTTTGG
3240053 ATATTGAGGCATCTTTGG
1 ATATTGAGGCATCTTTGG
3240071 GGATTCAACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.19, C:0.08, G:0.31, T:0.42
Consensus pattern (18 bp):
ATATTGAGGCATCTTTGG
Found at i:3240539 original size:36 final size:36
Alignment explanation
Indices: 3240492--3240612 Score: 197
Period size: 36 Copynumber: 3.3 Consensus size: 36
3240482 ATTGAAAACA
* * *
3240492 TTTCCCTTGAAATAAATTTCGTCTCTCTTGATATAG
1 TTTCCCTTGAAATAAATTTTGTCTCTCTTGAGACAG
*
3240528 TTTCCCTTGAAACAAAATTTTGTCTCTCTTGAGACAG
1 TTTCCCTTGAAA-TAAATTTTGTCTCTCTTGAGACAG
3240565 TTTCCCTTGAAATAAATTTTGTCTCTCTTGAGACAG
1 TTTCCCTTGAAATAAATTTTGTCTCTCTTGAGACAG
3240601 TTTCCCTTGAAA
1 TTTCCCTTGAAA
3240613 CAAAATATTT
Statistics
Matches: 79, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
36 47 0.59
37 32 0.41
ACGTcount: A:0.26, C:0.21, G:0.12, T:0.41
Consensus pattern (36 bp):
TTTCCCTTGAAATAAATTTTGTCTCTCTTGAGACAG
Found at i:3240613 original size:138 final size:138
Alignment explanation
Indices: 3240433--3240817 Score: 450
Period size: 138 Copynumber: 2.8 Consensus size: 138
3240423 GATTGCTTTT
* * *
3240433 TTAAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA-TTGAAAACATTTCC
1 TTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACA-AAACATTTGAAAACATTTCA
* * * *
3240497 CTTGAAATAAATTTCGTCTCTCTTGATATAGTTTCCCTTGAAACAAAATTTTGTCTCTCTTGAGA
65 CTTGAAACAAATTTCGTCTCCCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCTCTTGAGA
3240562 CAGTTTCCC
130 CAGTTTCCC
* * * * ** * *
3240571 TTGAAATAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATATTTGAATATGTTTTAT
1 TTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAACATTTGAAAACATTTCAC
** * * *
3240636 TTGAAACAAATTTCGTCTCCCTTGAGACAGTTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGAC
66 TTGAAACAAATTTCGTCTCCCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCTCTTGAGAC
*
3240701 AGTTTCTC
131 AGTTTCCC
* * *** *
3240709 TTAAAACAAATTTCGTCTATCTTGAGACAGTTTCCCTTGAAACAAAATC-TTTGAATTTATTTCC
1 TTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAA-CATTTGAAAACATTTCA
* * * * *
3240773 CCTAAAACAAATTTTGTCTCCCTTGAGACAGTTACTCTTGAAACA
65 CTTGAAACAAATTTCGTCTCCCTTGAGACAGTTTCCCTTGAAACA
3240818 CAAAATCTTC
Statistics
Matches: 207, Mismatches: 38, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
137 4 0.02
138 203 0.98
ACGTcount: A:0.30, C:0.19, G:0.12, T:0.39
Consensus pattern (138 bp):
TTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAACATTTGAAAACATTTCAC
TTGAAACAAATTTCGTCTCCCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCTCTTGAGAC
AGTTTCCC
Found at i:3240640 original size:102 final size:102
Alignment explanation
Indices: 3240534--3240718 Score: 282
Period size: 102 Copynumber: 1.8 Consensus size: 102
3240524 ATAGTTTCCC
* *
3240534 TTGAAACAAAATTTTGTCTCTCTTGAGACAGTTTCCCTT-GAAATAAATTTTGTCTCTCTTGAGA
1 TTGAAAC-AAATTTCGTCTCCCTTGAGACAGTTTCCCTTGGAAATAAATTTTGTCTCTCTTGAGA
*
3240598 CAGTTTCCCTTGAAACAAAATATTTGAATATGTTTTAT
65 CAGTTTCCCTTAAAACAAAATATTTGAATATGTTTTAT
** * *
3240636 TTGAAACAAATTTCGTCTCCCTTGAGACAGTTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGAC
1 TTGAAACAAATTTCGTCTCCCTTGAGACAGTTTCCCTTGGAAATAAATTTTGTCTCTCTTGAGAC
*
3240701 AGTTTCTCTTAAAACAAA
66 AGTTTCCCTTAAAACAAA
3240719 TTTCGTCTAT
Statistics
Matches: 74, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
101 27 0.36
102 47 0.64
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (102 bp):
TTGAAACAAATTTCGTCTCCCTTGAGACAGTTTCCCTTGGAAATAAATTTTGTCTCTCTTGAGAC
AGTTTCCCTTAAAACAAAATATTTGAATATGTTTTAT
Found at i:3240739 original size:36 final size:36
Alignment explanation
Indices: 3240636--3240754 Score: 157
Period size: 36 Copynumber: 3.3 Consensus size: 36
3240626 TATGTTTTAT
* *
3240636 TTGAAACAAATTTCGTCTCCCTTGAGACAGTTTCTT
1 TTGAAACAAATTTCGTCTCTCTTGAGACAGTTTCTC
* * *
3240672 TTGGAACTAAGTTTTGTCTCTCTTGAGACAGTTTCTC
1 TTGAAAC-AAATTTCGTCTCTCTTGAGACAGTTTCTC
* * *
3240709 TTAAAACAAATTTCGTCTATCTTGAGACAGTTTCCC
1 TTGAAACAAATTTCGTCTCTCTTGAGACAGTTTCTC
3240745 TTGAAACAAA
1 TTGAAACAAA
3240755 ATCTTTGAAT
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
36 40 0.57
37 30 0.43
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.38
Consensus pattern (36 bp):
TTGAAACAAATTTCGTCTCTCTTGAGACAGTTTCTC
Found at i:3240814 original size:65 final size:65
Alignment explanation
Indices: 3240710--3240888 Score: 223
Period size: 65 Copynumber: 2.7 Consensus size: 65
3240700 CAGTTTCTCT
* ** * **
3240710 TAAAACAAATTTCGTCTATCTTGAGACAGTTTCCCTTGAAACAAAATCTTTGAATTTATTTCCCC
1 TAAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAAATCTTCAAATTTATTTCCCC
*
3240775 TAAAACAAATTTTGTCTCCCTTGAGACAGTTACTCTTGAAACACAAAATCTTCAAATTTATTTCC
1 TAAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTG-AA-ACAAAATCTTCAAATTTATTTCC
*
3240840 CT
64 CC
* * * *
3240842 TAAAACATAATTTTGTTTCCCTTGAGACCGTTTTTCATGAAACAAAA
1 TAAAACA-AATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAAA
3240889 GATATCTTTG
Statistics
Matches: 98, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
65 33 0.34
66 8 0.08
67 31 0.32
68 26 0.27
ACGTcount: A:0.34, C:0.21, G:0.09, T:0.36
Consensus pattern (65 bp):
TAAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAAATCTTCAAATTTATTTCCCC
Found at i:3241721 original size:105 final size:107
Alignment explanation
Indices: 3241489--3241945 Score: 579
Period size: 105 Copynumber: 4.3 Consensus size: 107
3241479 GCCATCCGCG
* * *
3241489 ATTTCAACTCCACGACGGAGGATATCGTGGAAC-TCGAGACAACACAAGTTCAACTTCACAACGA
1 ATTTCAACTTCACAACGAAGGATAT--TGG-ACTTCGAGACAACACAAGTTCAACTTCACAACGA
* *
3241553 AGGGA-CGACTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCA
63 AGGGACCG-CTGCTTGTCAACAAACAACTTCCCAATTTCAGAGCCA
* *
3241598 ATTTCAACTTCACAACGAAGGATATTGGACTTC-AGACAACGCAAGTTCAACTTCACGACGAAGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTTCGAGACAACACAAGTTCAACTTCACAACGAAGG
3241662 GACCGCTGCTTGTCAAC-AACAACTTCCCAATTTCAGAGCCA
66 GACCGCTGCTTGTCAACAAACAACTTCCCAATTTCAGAGCCA
* ** *
3241703 ATTTCAACTTCACAACGAAGGATATTGGAC-TCCAGACAATGCAAGTTCAACTTCACGACGAAGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTTCGAGACAACACAAGTTCAACTTCACAACGAAGG
**
3241767 GACCGCTGCTTGTCAAC-AACAACTTCCCAATCCCAGAGCCA
66 GACCGCTGCTTGTCAACAAACAACTTCCCAATTTCAGAGCCA
* * *
3241808 ATTTCAACTTCATAATGAAGGATATTAGAC-TCGAGACAACACAAGTTCAACTTCACAACGAAGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTTCGAGACAACACAAGTTCAACTTCACAACGAAGG
* * * * * **
3241872 GACAGCTGGTTGTCAACAAAAAATTTCTC-GGTTCTAGAGCCA
66 GACCGCTGCTTGTCAACAAACAACTTCCCAATTTC-AGAGCCA
** *
3241914 ATTTCAACTTCATGACGGAGGATATTGGACTT
1 ATTTCAACTTCACAACGAAGGATATTGGACTT
3241946 GGAACAATGC
Statistics
Matches: 312, Mismatches: 30, Indels: 14
0.88 0.08 0.04
Matches are distributed among these distances:
104 2 0.01
105 195 0.62
106 85 0.27
107 8 0.03
109 22 0.07
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (107 bp):
ATTTCAACTTCACAACGAAGGATATTGGACTTCGAGACAACACAAGTTCAACTTCACAACGAAGG
GACCGCTGCTTGTCAACAAACAACTTCCCAATTTCAGAGCCA
Found at i:3242536 original size:34 final size:37
Alignment explanation
Indices: 3242492--3242593 Score: 167
Period size: 34 Copynumber: 2.8 Consensus size: 37
3242482 TTTCGTCCTA
3242492 CTAGGATTCAAACTCCTAAAAATAGGATAGA-A-TTT
1 CTAGGATTCAAACTCCTAAAAATAGGATAGACATTTT
3242527 -TAGGATTCAAACTCCTAAAAATAGGATA-ACATTTT
1 CTAGGATTCAAACTCCTAAAAATAGGATAGACATTTT
3242562 GCTAGGATTCAAACTCCTAAAAATAGGATAGA
1 -CTAGGATTCAAACTCCTAAAAATAGGATAGA
3242594 GTTCTACTAA
Statistics
Matches: 62, Mismatches: 0, Indels: 7
0.90 0.00 0.10
Matches are distributed among these distances:
33 1 0.02
34 29 0.47
35 3 0.05
37 28 0.45
38 1 0.02
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.27
Consensus pattern (37 bp):
CTAGGATTCAAACTCCTAAAAATAGGATAGACATTTT
Found at i:3243023 original size:18 final size:17
Alignment explanation
Indices: 3242984--3243026 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
3242974 ATTATATGGA
*
3242984 TATT-TTATTTATTTAT
1 TATTATTATTCATTTAT
*
3243000 TTTTATTATTCATGTTAT
1 TATTATTATTCAT-TTAT
3243018 TATTATTAT
1 TATTATTAT
3243027 ATGTATATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 3 0.14
17 7 0.32
18 12 0.55
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (17 bp):
TATTATTATTCATTTAT
Found at i:3243283 original size:57 final size:55
Alignment explanation
Indices: 3243196--3243306 Score: 145
Period size: 57 Copynumber: 2.0 Consensus size: 55
3243186 CTTTTAATAG
3243196 TTTATTTATATACATATTATTAATATATATATCTTA-ATTATTTTTTTGATTATTTC
1 TTTATTTATATACATATTATTAATATATATAT-TTATATTATTTTTTT-ATTATTTC
* * *
3243252 TTTATTTATGTAATATATTA-TAATTTTATATATTTATATTATTTTTTTATTATTT
1 TTTATTTATAT-ACATATTATTAA-TATATATATTTATATTATTTTTTTATTATTT
3243307 TCATTTTTTT
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
56 23 0.47
57 26 0.53
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.64
Consensus pattern (55 bp):
TTTATTTATATACATATTATTAATATATATATTTATATTATTTTTTTATTATTTC
Found at i:3243289 original size:21 final size:20
Alignment explanation
Indices: 3243265--3243306 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
3243255 ATTTATGTAA
3243265 TATATTATAATTTTATATATT
1 TATATTATAATTTTAT-TATT
**
3243286 TATATTATTTTTTTATTATT
1 TATATTATAATTTTATTATT
3243306 T
1 T
3243307 TCATTTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (20 bp):
TATATTATAATTTTATTATT
Found at i:3243302 original size:17 final size:17
Alignment explanation
Indices: 3243282--3243329 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
3243272 TAATTTTATA
3243282 TATTTATATTATTTTTT
1 TATTTATATTATTTTTT
*
3243299 TA-TTATTTTCATTTTTT
1 TATTTATATT-ATTTTTT
*
3243316 TATTCATTATTATT
1 TATTTA-TATTATT
3243330 ATATTATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
16 6 0.24
17 11 0.44
18 5 0.20
19 3 0.12
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.73
Consensus pattern (17 bp):
TATTTATATTATTTTTT
Found at i:3248592 original size:13 final size:13
Alignment explanation
Indices: 3248563--3248599 Score: 58
Period size: 12 Copynumber: 2.9 Consensus size: 13
3248553 AGGGTACCAA
3248563 AAAAATTAAAATT
1 AAAAATTAAAATT
3248576 -AAAATTAAAATT
1 AAAAATTAAAATT
*
3248588 AAAAATTGAAAT
1 AAAAATTAAAAT
3248600 AAGCCAAACA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 12 0.55
13 10 0.45
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.30
Consensus pattern (13 bp):
AAAAATTAAAATT
Found at i:3248599 original size:6 final size:6
Alignment explanation
Indices: 3248564--3248591 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
3248554 GGGTACCAAA
3248564 AAAATT AAAATT AAAATT AAAATT AAAA
1 AAAATT AAAATT AAAATT AAAATT AAAA
3248592 ATTGAAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (6 bp):
AAAATT
Found at i:3254195 original size:20 final size:20
Alignment explanation
Indices: 3254162--3254200 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
3254152 TCAGCTGAGT
* *
3254162 AGTATCGATACCGAGGGGAG
1 AGTATCAATACCGAAGGGAG
*
3254182 AGTATCAATGCCGAAGGGA
1 AGTATCAATACCGAAGGGA
3254201 AGGTATTGAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.33, C:0.15, G:0.36, T:0.15
Consensus pattern (20 bp):
AGTATCAATACCGAAGGGAG
Found at i:3254713 original size:55 final size:55
Alignment explanation
Indices: 3254646--3254844 Score: 285
Period size: 55 Copynumber: 3.6 Consensus size: 55
3254636 AAGTGTGCAA
*
3254646 AAACTTAAGAAATTCATACTAAGTGGATGAATTTTCGTATGGCCACTTTATGTGT
1 AAACTTAAGAAATTCATACTAAGTGGATGAATTTTCGTATGGGCACTTTATGTGT
* *
3254701 AAACTTAAGAAATTCATACTAAGTGGATGAATTTCCGTATGGGCAATTTATGTGT
1 AAACTTAAGAAATTCATACTAAGTGGATGAATTTTCGTATGGGCACTTTATGTGT
* *
3254756 AAACTTAA-AGAATTCATACTAAGTGGATGAATTTTCGTATGGGCACTTTATTTGCA
1 AAACTTAAGA-AATTCATACTAAGTGGATGAATTTTCGTATGGGCACTTTATGTG-T
* * * *
3254812 AAAC-TAGGAAAATCATACTAAGTGTATAAATTT
1 AAACTTAAGAAATTCATACTAAGTGGATGAATTT
3254845 CTATATTGGT
Statistics
Matches: 130, Mismatches: 11, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
54 1 0.01
55 124 0.95
56 5 0.04
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.35
Consensus pattern (55 bp):
AAACTTAAGAAATTCATACTAAGTGGATGAATTTTCGTATGGGCACTTTATGTGT
Found at i:3259184 original size:17 final size:17
Alignment explanation
Indices: 3259148--3259194 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
3259138 ATTTTTTTAT
3259148 TTTTAATAATAAAAACAA
1 TTTTAA-AATAAAAACAA
3259166 TTTTAAAATAATAAA-AA
1 TTTTAAAATAA-AAACAA
3259183 TTTTAAAA-AAAA
1 TTTTAAAATAAAA
3259195 CCCGTGTTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
15 2 0.07
16 2 0.07
17 15 0.54
18 9 0.32
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (17 bp):
TTTTAAAATAAAAACAA
Found at i:3262826 original size:24 final size:24
Alignment explanation
Indices: 3262794--3262847 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
3262784 GTATTCGAAA
3262794 TTTGATCTTGGTCAATACCCAGAC
1 TTTGATCTTGGTCAATACCCAGAC
* *
3262818 TTTGATCTTGGTCAATACTCAGAT
1 TTTGATCTTGGTCAATACCCAGAC
3262842 TTTGAT
1 TTTGAT
3262848 GATGTTTCTG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.41
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCAGAC
Found at i:3265068 original size:18 final size:18
Alignment explanation
Indices: 3265045--3265079 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
3265035 AGAAAAAGGC
*
3265045 AATCAAAATCGCAATCAA
1 AATCAAAATCCCAATCAA
3265063 AATCAAAATCCCAATCA
1 AATCAAAATCCCAATCA
3265080 CAACCGGCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.26, G:0.03, T:0.17
Consensus pattern (18 bp):
AATCAAAATCCCAATCAA
Found at i:3265391 original size:140 final size:140
Alignment explanation
Indices: 3265139--3265404 Score: 496
Period size: 140 Copynumber: 1.9 Consensus size: 140
3265129 AAACGTTGTA
3265139 TTATGTGTAAACTTTTAAAATTTTCAGTAAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
1 TTATGTGTAAACTTTTAAAATTTTCAGTAAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
*
3265204 TGATCTGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTGACTAT
66 TGATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTGACTAT
3265269 TATGTGTATT
131 TATGTGTATT
* * *
3265279 TTATGTGTAAACTTTTAACATTTTCAGTTAGGTATGTATTAGTAACTTGAGTTTGAACATTGCTA
1 TTATGTGTAAACTTTTAAAATTTTCAGTAAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
3265344 TGATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTGA
66 TGATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTGA
3265405 TTATCGCAAC
Statistics
Matches: 122, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
140 122 1.00
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.42
Consensus pattern (140 bp):
TTATGTGTAAACTTTTAAAATTTTCAGTAAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
TGATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTGACTAT
TATGTGTATT
Found at i:3265404 original size:20 final size:20
Alignment explanation
Indices: 3265379--3265617 Score: 190
Period size: 20 Copynumber: 12.8 Consensus size: 20
3265369 TTACACATTC
*
3265379 ATTTGAATATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
* *
3265399 ATTTGATTATCGCAACTC-A
1 ATTTGACTATCGCAACGCGA
*
3265418 A----A-TATTGCAACGCGA
1 ATTTGACTATCGCAACGCGA
*
3265433 ATTTGACTATCGCAACACGA
1 ATTTGACTATCGCAACGCGA
*
3265453 ATATGACTATCGCAACGC-A
1 ATTTGACTATCGCAACGCGA
*
3265472 A----A-AATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
3265487 ATTTGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
* * *
3265507 ATTTGATTATCGCAACGGGT
1 ATTTGACTATCGCAACGCGA
** *
3265527 ATTTGACTATTACAACGAGA
1 ATTTGACTATCGCAACGCGA
3265547 A----A--ATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
* *
3265561 ATTTGACTATCACAACACGA
1 ATTTGACTATCGCAACGCGA
* * *
3265581 ATTTGATTATCGCAACGGGT
1 ATTTGACTATCGCAACGCGA
3265601 ATTTGACTATCGCAACG
1 ATTTGACTATCGCAACG
3265618 AGAAAATCGC
Statistics
Matches: 172, Mismatches: 29, Indels: 36
0.73 0.12 0.15
Matches are distributed among these distances:
14 29 0.17
15 6 0.03
16 1 0.01
18 1 0.01
19 6 0.03
20 129 0.75
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.26
Consensus pattern (20 bp):
ATTTGACTATCGCAACGCGA
Found at i:3265456 original size:34 final size:34
Alignment explanation
Indices: 3265383--3265456 Score: 112
Period size: 34 Copynumber: 2.2 Consensus size: 34
3265373 ACATTCATTT
* *
3265383 GAATATCGCAACGCGAATTTGATTATCGCAACTC
1 GAATATCGCAACGCGAATTTGACTATCGCAACAC
* *
3265417 AAATATTGCAACGCGAATTTGACTATCGCAACAC
1 GAATATCGCAACGCGAATTTGACTATCGCAACAC
3265451 GAATAT
1 GAATAT
3265457 GACTATCGCA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.26
Consensus pattern (34 bp):
GAATATCGCAACGCGAATTTGACTATCGCAACAC
Found at i:3265464 original size:54 final size:54
Alignment explanation
Indices: 3265379--3265523 Score: 227
Period size: 54 Copynumber: 2.7 Consensus size: 54
3265369 TTACACATTC
* * * *
3265379 ATTTGAATATCGCAACGCGAATTTGATTATCGCAACTCAAATATTGCAACGCGA
1 ATTTGACTATCGCAACGCGAATTTGATTATCGCAACGCAAAAATCGCAACGCGA
* * *
3265433 ATTTGACTATCGCAACACGAATATGACTATCGCAACGCAAAAATCGCAACGCGA
1 ATTTGACTATCGCAACGCGAATTTGATTATCGCAACGCAAAAATCGCAACGCGA
3265487 ATTTGACTATCGCAACGCGAATTTGATTATCGCAACG
1 ATTTGACTATCGCAACGCGAATTTGATTATCGCAACG
3265524 GGTATTTGAC
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 81 1.00
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (54 bp):
ATTTGACTATCGCAACGCGAATTTGATTATCGCAACGCAAAAATCGCAACGCGA
Found at i:3265502 original size:74 final size:74
Alignment explanation
Indices: 3265424--3265666 Score: 319
Period size: 74 Copynumber: 3.3 Consensus size: 74
3265414 CTCAAATATT
** * *
3265424 GCAACGCGAATTTGACTATCGCAACACGAATATGACTATCGCAACGCA-AAAATCGCAACGCGAA
1 GCAACGCGAATTTGACTATCGCAACGGGTATTTGACTATCGCAACG-AGAAAATCGCAACGCGAA
3265488 TTTGACTATC
65 TTTGACTATC
* **
3265498 GCAACGCGAATTTGATTATCGCAACGGGTATTTGACTATTACAACGAGAAAATCGCAACGCGAAT
1 GCAACGCGAATTTGACTATCGCAACGGGTATTTGACTATCGCAACGAGAAAATCGCAACGCGAAT
3265563 TTGACTATC
66 TTGACTATC
* * * * *
3265572 ACAACACGAATTTGATTATCGCAACGGGTATTTGACTATCGCAACGAGAAAATCGCAAAGCGTAT
1 GCAACGCGAATTTGACTATCGCAACGGGTATTTGACTATCGCAACGAGAAAATCGCAACGCGAAT
* *
3265637 TAGACTATT
66 TTGACTATC
* *
3265646 GCAACGC-AAATTGACTTTCGC
1 GCAACGCGAATTTGACTATCGC
3265667 GTTGCGATTT
Statistics
Matches: 148, Mismatches: 20, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
73 12 0.08
74 136 0.92
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.24
Consensus pattern (74 bp):
GCAACGCGAATTTGACTATCGCAACGGGTATTTGACTATCGCAACGAGAAAATCGCAACGCGAAT
TTGACTATC
Found at i:3265597 original size:54 final size:54
Alignment explanation
Indices: 3265495--3265597 Score: 134
Period size: 54 Copynumber: 1.9 Consensus size: 54
3265485 GAATTTGACT
* * ** * *
3265495 ATCGCAACGCGAATTTGATTATCGCAACGGGTATTTGACTATTACAACGAGAAA
1 ATCGCAACGCGAATTTGACTATCACAACACGAATTTGACTATCACAACGAGAAA
* *
3265549 ATCGCAACGCGAATTTGACTATCACAACACGAATTTGATTATCGCAACG
1 ATCGCAACGCGAATTTGACTATCACAACACGAATTTGACTATCACAACG
3265598 GGTATTTGAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 41 1.00
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.25
Consensus pattern (54 bp):
ATCGCAACGCGAATTTGACTATCACAACACGAATTTGACTATCACAACGAGAAA
Found at i:3265685 original size:20 final size:20
Alignment explanation
Indices: 3265660--3265698 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
3265650 CGCAAATTGA
*
3265660 CTTTCGCGTTGCGATTTTGT
1 CTTTCGCATTGCGATTTTGT
3265680 CTTTCGCATTGCGATTTTG
1 CTTTCGCATTGCGATTTTG
3265699 AGTTTATCGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.08, C:0.21, G:0.23, T:0.49
Consensus pattern (20 bp):
CTTTCGCATTGCGATTTTGT
Found at i:3267870 original size:18 final size:18
Alignment explanation
Indices: 3267847--3267913 Score: 71
Period size: 20 Copynumber: 3.5 Consensus size: 18
3267837 GAAACTTAAA
*
3267847 ATCGCAACACGAATGACT
1 ATCGCAACGCGAATGACT
3267865 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCG--AATGACT
* *
3267885 ATTGCAATGCGAATTTGACT
1 ATCGCAACGCGAA--TGACT
3267905 ATCGCAACG
1 ATCGCAACG
3267914 AGAGAATCGC
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
18 12 0.30
20 28 0.70
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.21
Consensus pattern (18 bp):
ATCGCAACGCGAATGACT
Found at i:3267883 original size:20 final size:20
Alignment explanation
Indices: 3267858--3267913 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
3267848 TCGCAACACG
3267858 AATGACTATCGCAACGCGAA
1 AATGACTATCGCAACGCGAA
* *
3267878 AATGACTATTGCAATGCGAA
1 AATGACTATCGCAACGCGAA
**
3267898 TTTGACTATCGCAACG
1 AATGACTATCGCAACG
3267914 AGAGAATCGC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.23
Consensus pattern (20 bp):
AATGACTATCGCAACGCGAA
Found at i:3268055 original size:18 final size:18
Alignment explanation
Indices: 3268032--3268081 Score: 91
Period size: 18 Copynumber: 2.8 Consensus size: 18
3268022 TTTACTAAGC
*
3268032 AATCTATGTGAAATGGTT
1 AATCTAAGTGAAATGGTT
3268050 AATCTAAGTGAAATGGTT
1 AATCTAAGTGAAATGGTT
3268068 AATCTAAGTGAAAT
1 AATCTAAGTGAAAT
3268082 TACGAGTAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.40, C:0.06, G:0.20, T:0.34
Consensus pattern (18 bp):
AATCTAAGTGAAATGGTT
Found at i:3269868 original size:19 final size:20
Alignment explanation
Indices: 3269809--3269895 Score: 115
Period size: 20 Copynumber: 4.5 Consensus size: 20
3269799 TCTGAAACTT
3269809 AAAATCGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
3269829 AAAATCGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
** *
3269849 ACTATCGCAACGCG-AAATG
1 AAAATCGCAACACGAAAATG
* *
3269868 AAAATCGCAACGCGAAACT-
1 AAAATCGCAACACGAAAATG
3269887 AAAATCGCA
1 AAAATCGCA
3269896 TTGCGATTAT
Statistics
Matches: 60, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
19 26 0.43
20 34 0.57
ACGTcount: A:0.49, C:0.23, G:0.16, T:0.11
Consensus pattern (20 bp):
AAAATCGCAACACGAAAATG
Found at i:3270285 original size:26 final size:22
Alignment explanation
Indices: 3270268--3270318 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
3270258 GATGGAGATA
3270268 GATGGATTTCGTCGGAGATGGG
1 GATGGATTTCGTCGGAGATGGG
*
3270290 GATTGATTTCGTCGGAGATGGG
1 GATGGATTTCGTCGGAGATGGG
*
3270312 GACGGAT
1 GATGGAT
3270319 GTCGCCTTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.20, C:0.10, G:0.43, T:0.27
Consensus pattern (22 bp):
GATGGATTTCGTCGGAGATGGG
Found at i:3270509 original size:20 final size:20
Alignment explanation
Indices: 3270484--3270757 Score: 225
Period size: 20 Copynumber: 13.7 Consensus size: 20
3270474 GCGCTTTGAA
3270484 AATCGCATTGCGATAGTCAG
1 AATCGCATTGCGATAGTCAG
*
3270504 AATCGCGTTGCGATAGTCAG
1 AATCGCATTGCGATAGTCAG
3270524 AATCGCATTGCGATAGTCAG
1 AATCGCATTGCGATAGTCAG
* * * *
3270544 AATCTCGTTGCAATAGTCAT
1 AATCGCATTGCGATAGTCAG
* *
3270564 AATCGCATTGCGAT-TTACAT
1 AATCGCATTGCGATAGT-CAG
* *
3270584 ATTCGCATTGCG-GAGTC-G
1 AATCGCATTGCGATAGTCAG
* *
3270602 GATCGCGTTGCGATAGTCAG
1 AATCGCATTGCGATAGTCAG
3270622 AATCGCATTGCGATAGTCAG
1 AATCGCATTGCGATAGTCAG
* * * *
3270642 AATCTCGTTGCAATAGTCAT
1 AATCGCATTGCGATAGTCAG
* *
3270662 AATCGCATTGCGAT-TTACAT
1 AATCGCATTGCGATAGT-CAG
* *
3270682 ATTCGCATTGCGATAGTCGGAA
1 AATCGCATTGCGATAGTC--AG
** * * *
3270704 AATCGCAACGCGA-ATTTAAAA
1 AATCGCATTGCGATA-GT-CAG
*
3270725 AATCGCAATGCGATAGTCAG
1 AATCGCATTGCGATAGTCAG
*
3270745 AATCGCGTTGCGA
1 AATCGCATTGCGA
3270758 ATCCGGAAAC
Statistics
Matches: 201, Mismatches: 42, Indels: 22
0.76 0.16 0.08
Matches are distributed among these distances:
18 9 0.04
19 7 0.03
20 155 0.77
21 17 0.08
22 13 0.06
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.27
Consensus pattern (20 bp):
AATCGCATTGCGATAGTCAG
Found at i:3270674 original size:98 final size:99
Alignment explanation
Indices: 3270486--3270702 Score: 400
Period size: 98 Copynumber: 2.2 Consensus size: 99
3270476 GCTTTGAAAA
*
3270486 TCGCATTGCGATAGTCAGAATCGCGTTGCGATAGTCAGAATCGCATTGCGATAGTCAGAATCTCG
1 TCGCATTGCGATAGTC-GGATCGCGTTGCGATAGTCAGAATCGCATTGCGATAGTCAGAATCTCG
3270551 TTGCAATAGTCATAATCGCATTGCGATTTACATAT
65 TTGCAATAGTCATAATCGCATTGCGATTTACATAT
*
3270586 TCGCATTGCG-GAGTCGGATCGCGTTGCGATAGTCAGAATCGCATTGCGATAGTCAGAATCTCGT
1 TCGCATTGCGATAGTCGGATCGCGTTGCGATAGTCAGAATCGCATTGCGATAGTCAGAATCTCGT
3270650 TGCAATAGTCATAATCGCATTGCGATTTACATAT
66 TGCAATAGTCATAATCGCATTGCGATTTACATAT
3270684 TCGCATTGCGATAGTCGGA
1 TCGCATTGCGATAGTCGGA
3270703 AAATCGCAAC
Statistics
Matches: 113, Mismatches: 3, Indels: 3
0.95 0.03 0.03
Matches are distributed among these distances:
98 92 0.81
99 11 0.10
100 10 0.09
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.29
Consensus pattern (99 bp):
TCGCATTGCGATAGTCGGATCGCGTTGCGATAGTCAGAATCGCATTGCGATAGTCAGAATCTCGT
TGCAATAGTCATAATCGCATTGCGATTTACATAT
Found at i:3270716 original size:22 final size:22
Alignment explanation
Indices: 3270691--3270743 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 22
3270681 TATTCGCATT
**
3270691 GCGATAGTCGGAAAATCGCAAC
1 GCGATAGTCAAAAAATCGCAAC
* * *
3270713 GCGA-ATTTAAAAAATCGCAAT
1 GCGATAGTCAAAAAATCGCAAC
3270734 GCGATAGTCA
1 GCGATAGTCA
3270744 GAATCGCGTT
Statistics
Matches: 23, Mismatches: 7, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.40, C:0.19, G:0.23, T:0.19
Consensus pattern (22 bp):
GCGATAGTCAAAAAATCGCAAC
Found at i:3277486 original size:31 final size:31
Alignment explanation
Indices: 3277451--3277511 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
3277441 AATGTTCTCT
3277451 GGGCCTACCTAAGAAAATCATTGGGGCCTCG
1 GGGCCTACCTAAGAAAATCATTGGGGCCTCG
3277482 GGGCCTACCTAAGAAAATCATTGGGGCCTC
1 GGGCCTACCTAAGAAAATCATTGGGGCCTC
3277512 AGAGCTTACC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.26, C:0.26, G:0.28, T:0.20
Consensus pattern (31 bp):
GGGCCTACCTAAGAAAATCATTGGGGCCTCG
Found at i:3292640 original size:60 final size:60
Alignment explanation
Indices: 3292565--3292690 Score: 162
Period size: 60 Copynumber: 2.1 Consensus size: 60
3292555 ATCCCTATTT
* * * *
3292565 TAAATTAGCCCTTAAACTGTTAAATATTCTAATTTCATCCTCAAACTATGATACTCTTTC
1 TAAATTAACCCTTAAACTGTTAAATATTATAATTTCATCCTCAAACTATGACACTCATTC
* * ** * *
3292625 TAAATTAATCCTTAAACTTTTGCATATTATAATTTCATCCTTAAACTATGACCCTCATTC
1 TAAATTAACCCTTAAACTGTTAAATATTATAATTTCATCCTCAAACTATGACACTCATTC
3292685 TAAATT
1 TAAATT
3292691 GTCCCCAAAC
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
60 56 1.00
ACGTcount: A:0.34, C:0.21, G:0.04, T:0.41
Consensus pattern (60 bp):
TAAATTAACCCTTAAACTGTTAAATATTATAATTTCATCCTCAAACTATGACACTCATTC
Found at i:3294406 original size:28 final size:28
Alignment explanation
Indices: 3294374--3294430 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
3294364 ACATGAGTTA
*
3294374 ATCATGTATATGAGCGTTAAACTATATC
1 ATCATGTATATGAGAGTTAAACTATATC
3294402 ATCATGTATATGAGAGTTAAACTATATC
1 ATCATGTATATGAGAGTTAAACTATATC
3294430 A
1 A
3294431 CCACTTTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (28 bp):
ATCATGTATATGAGAGTTAAACTATATC
Found at i:3295961 original size:21 final size:21
Alignment explanation
Indices: 3295910--3295961 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 21
3295900 AAAATGTTTA
* *
3295910 AAATAAAATTTACTAAAAGTAT
1 AAAT-AAATTTACTAAAAATAC
*
3295932 AAAGT-AATTTTCTAAAAATAC
1 AAA-TAAATTTACTAAAAATAC
3295953 AAATAAATT
1 AAATAAATT
3295962 AAAATTCATC
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
20 1 0.04
21 20 0.80
22 3 0.12
23 1 0.04
ACGTcount: A:0.58, C:0.06, G:0.04, T:0.33
Consensus pattern (21 bp):
AAATAAATTTACTAAAAATAC
Found at i:3296249 original size:20 final size:19
Alignment explanation
Indices: 3296200--3296255 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 19
3296190 GAAAAAAGAA
3296200 AATAAATTAATTAATAAATC
1 AATAAATT-ATTAATAAATC
3296220 AATAATATTATTAAT-AATAC
1 AATAA-ATTATTAATAAAT-C
*
3296240 TAATAAATTAATAATA
1 -AATAAATTATTAATA
3296256 TTCGATTAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
19 3 0.10
20 20 0.65
21 8 0.26
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.38
Consensus pattern (19 bp):
AATAAATTATTAATAAATC
Found at i:3299523 original size:15 final size:15
Alignment explanation
Indices: 3299512--3299570 Score: 52
Period size: 14 Copynumber: 3.9 Consensus size: 15
3299502 GGAAATATAT
3299512 TAAA-AAATAATAAA
1 TAAACAAATAATAAA
3299526 TAAACAAATAA-AAA
1 TAAACAAATAATAAA
* *
3299540 CAAATCAAATAGAAAAAA
1 TAAA-CAAAT--AATAAA
3299558 TAAA-AAATAATAA
1 TAAACAAATAATAA
3299571 TAATAAAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
14 14 0.38
15 11 0.30
16 4 0.11
17 2 0.05
18 6 0.16
ACGTcount: A:0.76, C:0.05, G:0.02, T:0.17
Consensus pattern (15 bp):
TAAACAAATAATAAA
Found at i:3300817 original size:3 final size:3
Alignment explanation
Indices: 3300811--3300849 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
3300801 TAATTTTTTT
3300811 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
3300850 ATAAATAAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:3300873 original size:22 final size:24
Alignment explanation
Indices: 3300848--3300899 Score: 56
Period size: 25 Copynumber: 2.2 Consensus size: 24
3300838 TAATAATAAT
3300848 AAATAAATAA-ATA-AATGTTT-TA
1 AAATAAATAATATATAAT-TTTATA
*
3300870 AAATCATATAATATATAATTTTATA
1 AAAT-AAATAATATATAATTTTATA
3300895 AAATA
1 AAATA
3300900 TTTTTAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
22 4 0.16
23 5 0.20
24 7 0.28
25 9 0.36
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (24 bp):
AAATAAATAATATATAATTTTATA
Found at i:3300916 original size:37 final size:37
Alignment explanation
Indices: 3300865--3300962 Score: 112
Period size: 39 Copynumber: 2.6 Consensus size: 37
3300855 TAAATAAATG
* *
3300865 TTTTAAAATC-ATATAATATATAATTTTATAAA-ATAT
1 TTTTAAAAACTATATAATATATAATTTTAAAAACAT-T
*
3300901 TTTTAAAAACTATATATTATACGT-ATTTTAAAAACATT
1 TTTTAAAAACTATATAATATA--TAATTTTAAAAACATT
3300939 TTTTAAAAAACTATATAATATATA
1 TTTT-AAAAACTATATAATATATA
3300963 TAGATATATA
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
36 9 0.17
37 10 0.19
38 14 0.27
39 19 0.37
ACGTcount: A:0.49, C:0.05, G:0.01, T:0.45
Consensus pattern (37 bp):
TTTTAAAAACTATATAATATATAATTTTAAAAACATT
Found at i:3301213 original size:18 final size:18
Alignment explanation
Indices: 3301171--3301213 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
3301161 TGTATTAACG
3301171 TTTATATTTCATTCTTTA
1 TTTATATTTCATTCTTTA
* * * *
3301189 ATGATATTTCATTGTTTC
1 TTTATATTTCATTCTTTA
3301207 TTTATAT
1 TTTATAT
3301214 ATACGTGATT
Statistics
Matches: 19, Mismatches: 6, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.23, C:0.09, G:0.05, T:0.63
Consensus pattern (18 bp):
TTTATATTTCATTCTTTA
Found at i:3301340 original size:16 final size:17
Alignment explanation
Indices: 3301299--3301346 Score: 64
Period size: 16 Copynumber: 2.9 Consensus size: 17
3301289 TTGGCTTTGG
*
3301299 ATCTT-TTTATTTTATTT
1 ATCTTATTTACTTT-TTT
3301316 ATCTTATTTACTTTTTT
1 ATCTTATTTACTTTTTT
3301333 AT-TTATTTACTTTT
1 ATCTTATTTACTTTT
3301347 AAACTTTGGT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
16 12 0.41
17 10 0.34
18 7 0.24
ACGTcount: A:0.19, C:0.08, G:0.00, T:0.73
Consensus pattern (17 bp):
ATCTTATTTACTTTTTT
Found at i:3304792 original size:137 final size:137
Alignment explanation
Indices: 3304542--3304816 Score: 525
Period size: 137 Copynumber: 2.0 Consensus size: 137
3304532 AAAGCCTATA
3304542 AAAGACTCCAGTTGTCGGTCCTACTATCGAGGAGCTTGTGTATCCCCCAAGTTTTGAATCAACGA
1 AAAGACTCCAGTTGTCGGTCCTACTATCGAGGAGCTTGTGTATCCCCCAAGTTTTGAATCAACGA
3304607 CTAACATTGGAAAATCCTCAGTTGTTGGTTCCTCCAAAAGAACGTTGTATCCCCCTGGCTTTACA
66 CTAACATTGGAAAATCCTCAGTTGTTGGTTCCTCCAAAAGAACGTTGTATCCCCCTGGCTTTACA
3304672 CCACCAC
131 CCACCAC
3304679 AAAGACTCCAGTTGTCGGTCCTACTATCGAGGAGCTTGTGTATCCCCCAAGTTTTGAATCAACGA
1 AAAGACTCCAGTTGTCGGTCCTACTATCGAGGAGCTTGTGTATCCCCCAAGTTTTGAATCAACGA
*
3304744 CTAACATTGGAAAATCCTCAGTTGTTGGTTCCTCC-GAAGAACGCTTGTATCCCCCTGGCTTTAC
66 CTAACATTGGAAAATCCTCAGTTGTTGGTTCCTCCAAAAGAACG-TTGTATCCCCCTGGCTTTAC
3304808 ACCACCAC
130 ACCACCAC
3304816 A
1 A
3304817 CGTCCGAGCT
Statistics
Matches: 136, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
136 7 0.05
137 129 0.95
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.28
Consensus pattern (137 bp):
AAAGACTCCAGTTGTCGGTCCTACTATCGAGGAGCTTGTGTATCCCCCAAGTTTTGAATCAACGA
CTAACATTGGAAAATCCTCAGTTGTTGGTTCCTCCAAAAGAACGTTGTATCCCCCTGGCTTTACA
CCACCAC
Found at i:3308803 original size:112 final size:112
Alignment explanation
Indices: 3308458--3309067 Score: 641
Period size: 112 Copynumber: 5.4 Consensus size: 112
3308448 TAATTTGCTA
* * * * *
3308458 ATTTGATATTCCCTGAGTGACAGCGGAAAAAATCTACCTCGATTAAATGAATCAACCTCCACCAG
1 ATTTGATATTCCCTGAGTGACAGCGGAACAAATCTTCCCCGATTCAATGAATCAA-CTCCTCCAG
* * *
3308523 ATCTGATATTCCCTTCAGAAGAAGC-GAAACAGATCCCTCACTTTCTAG
65 ATATGATATTCCCTTCAGAAGAAGCAG-AACAAATCCCTCACTTTCAAG
* * * * * * * *
3308571 ATTTGATATTCCGTTAGTGCCAGTGGAAAAAATCTACCCCAATTCAATGAATTAACCTCCTCCAG
1 ATTTGATATTCCCTGAGTGACAGCGGAACAAATCTTCCCCGATTCAATGAATCAA-CTCCTCCAG
* * * *
3308636 ATATGATATTCCCTTCAGAAGAAGCGGAACAAATCCCCCACTTCCTAG
65 ATATGATATTCCCTTCAGAAGAAGCAGAACAAATCCCTCACTTTCAAG
* * * * * *
3308684 ATTTGATATTTCCTAAGTGACAGTGGAACAAATCTTCCCCTATTCAATGGATCAACTCCTCCATA
1 ATTTGATATTCCCTGAGTGACAGCGGAACAAATCTTCCCCGATTCAATGAATCAACTCCTCCAGA
* *
3308749 TATGATGTTCCCTTCAGAAGAAGCAGAACAAATCCCTCTCTTTCAAG
66 TATGATATTCCCTTCAGAAGAAGCAGAACAAATCCCTCACTTTCAAG
* * * * *
3308796 ATATGATATTCCCTGAGTGACTGCGGAACAAATCTTCACCGATTCAATGGATCAACTCCTTCAGA
1 ATTTGATATTCCCTGAGTGACAGCGGAACAAATCTTCCCCGATTCAATGAATCAACTCCTCCAGA
* *
3308861 TATGATATTCCCTTCAGAAGAAGCAGAACATATCCCTCTCTTTCAAG
66 TATGATATTCCCTTCAGAAGAAGCAGAACAAATCCCTCACTTTCAAG
* * * * ** **
3308908 ATTTGATATTCCCTGGGTGACAACAGAACAAATCTGCCCTAATTCAATGAATCAACTCC-CTTGG
1 ATTTGATATTCCCTGAGTGACAGCGGAACAAATCTTCCCCGATTCAATGAATCAACTCCTC-CAG
* * * ** *** **
3308972 ATCTGATATTCCCTTTAGAAAAAGTGGAACAAATATAT-TTTTTCCAAG
65 ATATGATATTCCCTTCAGAAGAAGCAGAACAAATCCCTCACTTT-CAAG
* * * *
3309020 ATTTGATATTCCCTGAGTGACAACAGAACAAGTCTGCCCCGATTCAAT
1 ATTTGATATTCCCTGAGTGACAGCGGAACAAATCTTCCCCGATTCAAT
3309068 CTTCCCTGAG
Statistics
Matches: 427, Mismatches: 67, Indels: 7
0.85 0.13 0.01
Matches are distributed among these distances:
111 4 0.01
112 278 0.65
113 144 0.34
114 1 0.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (112 bp):
ATTTGATATTCCCTGAGTGACAGCGGAACAAATCTTCCCCGATTCAATGAATCAACTCCTCCAGA
TATGATATTCCCTTCAGAAGAAGCAGAACAAATCCCTCACTTTCAAG
Done.