Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007867.1 Hibiscus syriacus cultivar Beakdansim tig00110239_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3477501
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 5 of 18
Found at i:793379 original size:23 final size:21
Alignment explanation
Indices: 793343--793384 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
793333 ATAAATATTA
*
793343 TTATTGAATCAAATATATATAT
1 TTATTGAATAAAATA-ATATAT
793365 TTATATGAATAAAATAATAT
1 TTAT-TGAATAAAATAATAT
793385 TTAATAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.50, C:0.02, G:0.05, T:0.43
Consensus pattern (21 bp):
TTATTGAATAAAATAATATAT
Found at i:794743 original size:3 final size:3
Alignment explanation
Indices: 794735--794769 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
794725 ATTTATTTAT
794735 TAA TAA TAA T-A TAA T-A TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
794770 TTTAAAAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 4 0.13
3 26 0.87
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:795043 original size:5 final size:5
Alignment explanation
Indices: 795035--795070 Score: 65
Period size: 5 Copynumber: 7.4 Consensus size: 5
795025 CATCCCGACC
795035 CGAGA CGAGA CGAGA CGAGA CGAGA CGAGA CG-GA CG
1 CGAGA CGAGA CGAGA CGAGA CGAGA CGAGA CGAGA CG
795071 GCGGCGGCGG
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 4 0.13
5 27 0.87
ACGTcount: A:0.36, C:0.22, G:0.42, T:0.00
Consensus pattern (5 bp):
CGAGA
Found at i:795550 original size:6 final size:6
Alignment explanation
Indices: 795541--795571 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
795531 GCCGTCCGTC
795541 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG T
1 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG T
795572 AATACGTGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.00, C:0.16, G:0.48, T:0.35
Consensus pattern (6 bp):
TCGTGG
Found at i:795679 original size:19 final size:19
Alignment explanation
Indices: 795655--795720 Score: 69
Period size: 19 Copynumber: 3.3 Consensus size: 19
795645 TTAACTATCA
795655 CAACGAATTTGGAAAATCG
1 CAACGAATTTGGAAAATCG
* * **
795674 CAACGACAACTGTAGACTATCG
1 CAACG--AA-TTTGGAAAATCG
795696 CAACGAATTTGGAAAATCG
1 CAACGAATTTGGAAAATCG
795715 CAACGA
1 CAACGA
795721 CAACTGTAGA
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
19 19 0.53
20 2 0.06
21 2 0.06
22 13 0.36
ACGTcount: A:0.41, C:0.21, G:0.20, T:0.18
Consensus pattern (19 bp):
CAACGAATTTGGAAAATCG
Found at i:795697 original size:22 final size:22
Alignment explanation
Indices: 795670--795741 Score: 87
Period size: 22 Copynumber: 3.4 Consensus size: 22
795660 AATTTGGAAA
795670 ATCGCAACGACAACTGTAGACT
1 ATCGCAACGACAACTGTAGACT
* * **
795692 ATCGCAACG--AA-TTTGGAAA
1 ATCGCAACGACAACTGTAGACT
795711 ATCGCAACGACAACTGTAGACT
1 ATCGCAACGACAACTGTAGACT
795733 ATCGCAACG
1 ATCGCAACG
795742 CGAAACGGAA
Statistics
Matches: 39, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
19 13 0.33
20 2 0.05
21 2 0.05
22 22 0.56
ACGTcount: A:0.38, C:0.25, G:0.19, T:0.18
Consensus pattern (22 bp):
ATCGCAACGACAACTGTAGACT
Found at i:795705 original size:41 final size:41
Alignment explanation
Indices: 795648--795741 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
795638 CTTTTTTTTA
*
795648 ACTATCACAACGAATTTGGAAAATCGCAACGACAACTGTAG
1 ACTATCGCAACGAATTTGGAAAATCGCAACGACAACTGTAG
795689 ACTATCGCAACGAATTTGGAAAATCGCAACGACAACTGTAG
1 ACTATCGCAACGAATTTGGAAAATCGCAACGACAACTGTAG
795730 ACTATCGCAACG
1 ACTATCGCAACG
795742 CGAAACGGAA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.23, G:0.18, T:0.19
Consensus pattern (41 bp):
ACTATCGCAACGAATTTGGAAAATCGCAACGACAACTGTAG
Found at i:795758 original size:20 final size:20
Alignment explanation
Indices: 795733--795867 Score: 153
Period size: 20 Copynumber: 6.7 Consensus size: 20
795723 ACTGTAGACT
*
795733 ATCGCAACGCGAAACGGAAA
1 ATCGCAACGCGAAATGGAAA
795753 ATCGCAACGCGAAATGGAAA
1 ATCGCAACGCGAAATGGAAA
** ** *
795773 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGAAATGGAA-A
795794 ATCGCAACGCGAAATGGAAA
1 ATCGCAACGCGAAATGGAAA
** ** *
795814 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGAAATGGAA-A
795835 ATCGCAACGCGAAATGGAAA
1 ATCGCAACGCGAAATGGAAA
795855 ATCGCAACGCGAA
1 ATCGCAACGCGAA
795868 TTTGCGATAG
Statistics
Matches: 92, Mismatches: 21, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
20 62 0.67
21 30 0.33
ACGTcount: A:0.39, C:0.24, G:0.21, T:0.15
Consensus pattern (20 bp):
ATCGCAACGCGAAATGGAAA
Found at i:795761 original size:61 final size:59
Alignment explanation
Indices: 795692--795822 Score: 165
Period size: 61 Copynumber: 2.2 Consensus size: 59
795682 ACTGTAGACT
*
795692 ATCGCAACGAATTTGGAAAATCGCAACGACAACTGT-AGACTATCGCAACGCGAAACGGAAA
1 ATCGCAACGAA-ATGGAAAATCGCAACG-CAACTGTCA-ACTATCGCAACGCGAAACGGAAA
* * * *
795753 ATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCAACTATCGCAACGCGAAATGGAAA
1 ATCGCAA--CGAAATGGAAAATCGCAACGCAACTGTCAACTATCGCAACGCGAAACGGAAA
795814 ATCGCAACG
1 ATCGCAACG
795823 CGATTTTCAA
Statistics
Matches: 62, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
59 2 0.03
61 40 0.65
62 16 0.26
63 4 0.06
ACGTcount: A:0.40, C:0.24, G:0.21, T:0.15
Consensus pattern (59 bp):
ATCGCAACGAAATGGAAAATCGCAACGCAACTGTCAACTATCGCAACGCGAAACGGAAA
Found at i:795799 original size:21 final size:21
Alignment explanation
Indices: 795773--795846 Score: 96
Period size: 21 Copynumber: 3.6 Consensus size: 21
795763 GAAATGGAAA
795773 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGATTTTCAACT
** ** *
795794 ATCGCAACGCGAAATGGAA-A
1 ATCGCAACGCGATTTTCAACT
795814 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGATTTTCAACT
795835 ATCGCAACGCGA
1 ATCGCAACGCGA
795847 AATGGAAAAT
Statistics
Matches: 42, Mismatches: 10, Indels: 2
0.78 0.19 0.04
Matches are distributed among these distances:
20 15 0.36
21 27 0.64
ACGTcount: A:0.34, C:0.27, G:0.19, T:0.20
Consensus pattern (21 bp):
ATCGCAACGCGATTTTCAACT
Found at i:795805 original size:41 final size:41
Alignment explanation
Indices: 795753--795866 Score: 228
Period size: 41 Copynumber: 2.8 Consensus size: 41
795743 GAAACGGAAA
795753 ATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCAACT
795794 ATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCAACT
795835 ATCGCAACGCGAAATGGAAAATCGCAACGCGA
1 ATCGCAACGCGAAATGGAAAATCGCAACGCGA
795867 ATTTGCGATA
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 73 1.00
ACGTcount: A:0.38, C:0.25, G:0.21, T:0.17
Consensus pattern (41 bp):
ATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCAACT
Found at i:795859 original size:61 final size:61
Alignment explanation
Indices: 795733--795867 Score: 155
Period size: 61 Copynumber: 2.2 Consensus size: 61
795723 ACTGTAGACT
* ** * *
795733 ATCGCAACGCGAAACGGAAAATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGAAACGGAAAATCGCAACGCGAAATGCAAAATCGCAACGCGAAATGCAACA
* ** * * *
795794 ATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCAACTATCGCAACGCGAAATGGAA-A
1 ATCGCAACGCGAAACGGAAAATCGCAACGCGAAATGCAA-AATCGCAACGCGAAATGCAACA
795855 ATCGCAACGCGAA
1 ATCGCAACGCGAA
795868 TTTGCGATAG
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
61 47 0.76
62 15 0.24
ACGTcount: A:0.39, C:0.24, G:0.21, T:0.15
Consensus pattern (61 bp):
ATCGCAACGCGAAACGGAAAATCGCAACGCGAAATGCAAAATCGCAACGCGAAATGCAACA
Found at i:796842 original size:24 final size:24
Alignment explanation
Indices: 796798--796843 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
796788 AATATATTAA
* *
796798 TTTTTATAAATATATTTTTTATAT
1 TTTTTATAAATATAATATTTATAT
796822 TTTTTATAAATA-AGATATTTAT
1 TTTTTATAAATATA-ATATTTAT
796844 TTACTTAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 1 0.05
24 18 0.95
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (24 bp):
TTTTTATAAATATAATATTTATAT
Found at i:797101 original size:149 final size:144
Alignment explanation
Indices: 796817--797215 Score: 384
Period size: 149 Copynumber: 2.7 Consensus size: 144
796807 ATATATTTTT
* * * * * *
796817 TATATTTTTTATAAATAAGATATTTATTTACTTAGAAATATCAGAAAATGACTTCTAGTTGCTTT
1 TATATTATTTATAAA-ATGATATTTATTTATTTAAAAATATCAGAAAATGACATCTAGTT-ATTT
** * * * **
796882 AAGACAACCCCTTTTTTAATATTAAAAAAATAAAT-ATTAATAAAACATTTCTCAAAAATAAATT
64 AAGAC-TGCCCTTTCTTAATATT-AAAAAATAAATAAATATTAAAACATTGATCAAAAATAAATT
796946 AAAAAA-TAAAATAAAT-
127 AAAAAATTAAAATAAATA
* *
796962 TAATATATATTTATAAAAGTAGGATATTTATTTATTTAAAAATATCAGAAAAGGAAATCTAGTTA
1 T-ATAT-TATTTATAAAA-T--GATATTTATTTATTTAAAAATATCAGAAAATGACATCTAGTTA
*
797027 TTTTAAGACTGCCCTTTCTTAATATTAAAAAATAAATAAATATTAAAA-ATATGAT-TAAAAT-A
61 -TTTAAGACTGCCCTTTCTTAATATTAAAAAATAAATAAATATTAAAACAT-TGATCAAAAATAA
797089 ATTAACATAAAATTAAAATAAATA
124 ATT-A-A-AAAATTAAAATAAATA
* * * *
797113 TATATTTTTTATAACATGATA-TTA-TTATTTTTAAAATA-CAAGAATATGACATCTAGTTATTT
1 TATATTATTTATAAAATGATATTTATTTA-TTTAAAAATATC-AGAAAATGACATCTAGTTATTT
* * *
797175 AGGACTGCTCTTTCTTAATATTTAAAAATAAATAAATATTA
64 AAGACTGCCCTTTCTTAATATTAAAAAATAAATAAATATTA
797216 TTATTGAATC
Statistics
Matches: 214, Mismatches: 25, Indels: 31
0.79 0.09 0.11
Matches are distributed among these distances:
144 45 0.21
145 29 0.14
146 13 0.06
147 28 0.13
148 26 0.12
149 58 0.27
150 14 0.07
151 1 0.00
ACGTcount: A:0.48, C:0.07, G:0.06, T:0.39
Consensus pattern (144 bp):
TATATTATTTATAAAATGATATTTATTTATTTAAAAATATCAGAAAATGACATCTAGTTATTTAA
GACTGCCCTTTCTTAATATTAAAAAATAAATAAATATTAAAACATTGATCAAAAATAAATTAAAA
AATTAAAATAAATA
Found at i:797229 original size:22 final size:23
Alignment explanation
Indices: 797204--797257 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 23
797194 ATTTAAAAAT
*
797204 AAATAAATATTATTAT-TGAATC
1 AAATAAATATTATTATATGAATA
*
797226 AAATATATA-TATTATATGAATA
1 AAATAAATATTATTATATGAATA
797248 AAAT-AATATT
1 AAATAAATATT
797258 TAATAATTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 9 0.33
22 18 0.67
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.41
Consensus pattern (23 bp):
AAATAAATATTATTATATGAATA
Found at i:798613 original size:3 final size:3
Alignment explanation
Indices: 798605--798636 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
798595 ATTTATTTAT
798605 TAA TAA TAA T-A TAA T-A TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
798637 TTTAAAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
2 4 0.15
3 23 0.85
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:798947 original size:45 final size:45
Alignment explanation
Indices: 798883--798981 Score: 153
Period size: 45 Copynumber: 2.2 Consensus size: 45
798873 CCCGAAGGCT
798883 TTTTGAAAACATCCTGCACTGAAAGTCTTATGGATGACCCAAAGG
1 TTTTGAAAACATCCTGCACTGAAAGTCTTATGGATGACCCAAAGG
* * *
798928 TTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGG
1 TTTTGAAAACATCCTGCACTGAAAGTCTTATGGATGACCCAAAGG
* *
798973 CTTCGAAAA
1 TTTTGAAAA
798982 AATAAAAAAG
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.27
Consensus pattern (45 bp):
TTTTGAAAACATCCTGCACTGAAAGTCTTATGGATGACCCAAAGG
Found at i:799010 original size:121 final size:119
Alignment explanation
Indices: 798818--799057 Score: 363
Period size: 121 Copynumber: 2.0 Consensus size: 119
798808 GAGGTCTTAT
* * * * *
798818 CATCTTGCACTGTAGGTCTTACAGATGACCCGGAGGATTTAAATATCAAAAAGCTCCCGAAGGCT
1 CATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGATTAAAAAATAAAAAAGCTCCCGAAGGCT
798883 TTTTGAAAACATCCTGCACTGAAAGTCTTATGGATGACCCAAAGGTTTTGAAAA
66 TTTTGAAAACATCCTGCACTGAAAGTCTTATGGATGACCCAAAGGTTTTGAAAA
** *
798937 CATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGCTTCGAAAAAATAAAAAAGCTCCCGAAGG
1 CATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGATT--AAAAAATAAAAAAGCTCCCGAAGG
* * *
799002 CTTTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAAAA
64 CTTTTTGAAAACATCCTGCACTGAAAGTCTTATGGATGACCCAAAGGTTTTGAAAA
799058 TATCAAAAAG
Statistics
Matches: 108, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
119 34 0.31
121 74 0.69
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.26
Consensus pattern (119 bp):
CATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGATTAAAAAATAAAAAAGCTCCCGAAGGCT
TTTTGAAAACATCCTGCACTGAAAGTCTTATGGATGACCCAAAGGTTTTGAAAA
Found at i:799057 original size:76 final size:76
Alignment explanation
Indices: 798928--799209 Score: 492
Period size: 76 Copynumber: 3.7 Consensus size: 76
798918 GACCCAAAGG
* * * *
798928 TTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGCTTCGAAAAAATAAAAAAGC
1 TTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAAAATATCAAAAAGC
798993 TCCCGAAGGCT
66 TCCCGAAGGCT
799004 TTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAAAATATCAAAAAGC
1 TTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAAAATATCAAAAAGC
799069 TCCCGAAGGCT
66 TCCCGAAGGCT
799080 TTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAAAATATCAAAAAGC
1 TTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAAAATATCAAAAAGC
799145 TCCCGAAGGCT
66 TCCCGAAGGCT
* * * *
799156 TTTTGAAAACATCATGTATTGTAGGTCTTATGGATGACCCAAAGGTTTTGAAAA
1 TTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAAAA
799210 CATCCTGCAC
Statistics
Matches: 198, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
76 198 1.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (76 bp):
TTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAAAATATCAAAAAGC
TCCCGAAGGCT
Found at i:799224 original size:45 final size:45
Alignment explanation
Indices: 799156--799259 Score: 145
Period size: 45 Copynumber: 2.3 Consensus size: 45
799146 CCCGAAGGCT
* * **
799156 TTTTGAAAACATCATGTATTGTAGGTCTTATGGATGACCCAAAGG
1 TTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCAAAGG
* *
799201 TTTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGG
1 TTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCAAAGG
*
799246 CTTTGAAAACATCA
1 TTTTGAAAACATCA
799260 AAAAAGCTCT
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 51 1.00
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (45 bp):
TTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCAAAGG
Found at i:799237 original size:121 final size:122
Alignment explanation
Indices: 799080--799335 Score: 388
Period size: 122 Copynumber: 2.1 Consensus size: 122
799070 CCCGAAGGCT
** * *
799080 TTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAAAATATC-AAAAAG
1 TTTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAAG
** * *
799144 CTCCCGAAGGCTTTTTGAAAACATCATGTATTGTAGGTCTTATGGATGACCCAAAGG
66 CTCCCGAAGGCTTTTTGAAAACATCATACACTGTAGGTCTTATAGATGACCCAAAGG
799201 TTTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAAG
1 TTTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAAG
* * *
799266 CTCTCGAAGGCTTTTTGAAAACATCCTACACTGTAGGTCTTATAGATGACCCGAAGG
66 CTCCCGAAGGCTTTTTGAAAACATCATACACTGTAGGTCTTATAGATGACCCAAAGG
* *
799323 CTTTAAAAACATC
1 TTTTGAAAACATC
799336 AAAAAGCTCC
Statistics
Matches: 121, Mismatches: 13, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
121 54 0.45
122 67 0.55
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.28
Consensus pattern (122 bp):
TTTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAAG
CTCCCGAAGGCTTTTTGAAAACATCATACACTGTAGGTCTTATAGATGACCCAAAGG
Found at i:799341 original size:198 final size:197
Alignment explanation
Indices: 799004--799609 Score: 641
Period size: 198 Copynumber: 3.1 Consensus size: 197
798994 CCCGAAGGCT
** * *
799004 TTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAAAATATCAAAAAGC
1 TTTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGC
* * * *
799069 TCCCGAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAAAA
66 TCCCGAAGGCTTTTTGAAAACATCCTACACTGTAGGTCTTATAGATGACCCGAAGGCTTTAAAAA
* * * * **
799134 TATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCATGTATTGTAGGTCTTATGGATGACCCAAA
131 CATCAAAAAGCTCCCAAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCAAA
799199 GG
196 GG
799201 TTTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAAG
1 TTTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAACATC-AAAAAG
*
799266 CTCTCGAAGGCTTTTTGAAAACATCCTACACTGTAGGTCTTATAGATGACCCGAAGGCTTTAAAA
65 CTCCCGAAGGCTTTTTGAAAACATCCTACACTGTAGGTCTTATAGATGACCCGAAGGCTTTAAAA
* * *
799331 ACATCAAAAAGCTCCCAAAGGCTTTTTGAAAGCATCCTGCACTGTAGGTCTTACAGATGACCCGA
130 ACATCAAAAAGCTCCCAAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCAA
799396 AGG
195 AGG
* * ** * * *** ** * * * * *** *
799399 GTTTGAAAATATCAAAAAGCTCCTGAAGG-CTTTTTGAAAACATC-ATGTACTGT-AGGTC-TTA
1 TTTTGAAAACATC---CTGC-ACTGTAGGTCTTACAGATGAC-CCGAAG-GCTTTGAAAACATCA
** * * * * *
799460 TGGATG-ACCCAAAGG--TTTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCT
60 -AAAAGCTCCCGAAGGCTTTTTGAAAACATCCTACACTGTAGGTCTTATAGATGACCCGAAGGCT
* * * *
799522 TTAAAAACATCAAAAAAGCTCTCGAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTATAGAT
124 TTAAAAACATC-AAAAAGCTCCCAAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGAT
799587 GACCCAAAGG
188 GACCCAAAGG
*
799597 CTTTGAAAACATC
1 TTTTGAAAACATC
799610 AAAAGCTCCC
Statistics
Matches: 348, Mismatches: 52, Indels: 17
0.83 0.12 0.04
Matches are distributed among these distances:
197 110 0.32
198 205 0.59
199 7 0.02
200 3 0.01
201 13 0.04
202 10 0.03
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (197 bp):
TTTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGC
TCCCGAAGGCTTTTTGAAAACATCCTACACTGTAGGTCTTATAGATGACCCGAAGGCTTTAAAAA
CATCAAAAAGCTCCCAAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCAAA
GG
Found at i:799378 original size:274 final size:274
Alignment explanation
Indices: 798818--799758 Score: 1550
Period size: 274 Copynumber: 3.5 Consensus size: 274
798808 GAGGTCTTAT
* * *
798818 CATCTTGCACTGTAGGTCTTACAGATGACCCGGAGGATTT--AAATATCAAAAAGCTCCCGAAGG
1 CATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGGTTTGAAAATATCAAAAAGCTCCCGAAGG
* *
798881 CTTTTTGAAAACATCCTGCACTGAAAGTCTTATGGATGACCCAAAGGTTTTGAAAACATCCTGCA
66 CTTTTTGAAAACATCATGCACTGTAAGTCTTATGGATGACCCAAAGGTTTTGAAAACATCCTGCA
** * * *
798946 CTGTAGGTCTTATGGATGACCCGAAGGCTTCGAAAAAAT-AAAAAAGCTCCCGAAGGCTTTTTGA
131 CTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAAGCTCTCGAAGGCTTTTTGA
* * * *
799010 AAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAAAATATCAAAAAGCTCCCGA
196 AAACATCCTGCACTGTAGGTCTTATAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCAA
*
799075 AGGCTTTTTGAAAA
261 AGGCTTTTTGAAAG
** *
799089 CATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAAAATATCAAAAAGCTCCCGAAGG
1 CATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGGTTTGAAAATATCAAAAAGCTCCCGAAGG
* * *
799154 CTTTTTGAAAACATCATGTATTGTAGGTCTTATGGATGACCCAAAGGTTTTGAAAACATCCTGCA
66 CTTTTTGAAAACATCATGCACTGTAAGTCTTATGGATGACCCAAAGGTTTTGAAAACATCCTGCA
799219 CTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAAGCTCTCGAAGGCTTTTTGA
131 CTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAAGCTCTCGAAGGCTTTTTGA
* *
799284 AAACATCCTACACTGTAGGTCTTATAGATGACCCGAAGGCTTTAAAAACATCAAAAAGCTCCCAA
196 AAACATCCTGCACTGTAGGTCTTATAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCAA
799349 AGGCTTTTTGAAAG
261 AGGCTTTTTGAAAG
*
799363 CATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGGTTTGAAAATATCAAAAAGCTCCTGAAGG
1 CATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGGTTTGAAAATATCAAAAAGCTCCCGAAGG
* *
799428 CTTTTTGAAAACATCATGTACTGTAGGTCTTATGGATGACCCAAAGGTTTTGAAAACATCCTGCA
66 CTTTTTGAAAACATCATGCACTGTAAGTCTTATGGATGACCCAAAGGTTTTGAAAACATCCTGCA
*
799493 CTGTAGGTCTTACAGATGACCCGAAGGCTTTAAAAACATCAAAAAAGCTCTCGAAGGCTTTTTGA
131 CTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAAGCTCTCGAAGGCTTTTTGA
*
799558 AAACATCCTGCACTGTAGGTCTTATAGATGACCCAAAGGCTTTGAAAACATC-AAAAGCTCCCAA
196 AAACATCCTGCACTGTAGGTCTTATAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCAA
799622 AGGC-TTTTGAAAG
261 AGGCTTTTTGAAAG
* *
799635 CATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGGTTTGAAAACATCAAAAAGCTCCTGAAGG
1 CATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGGTTTGAAAATATCAAAAAGCTCCCGAAGG
* * *
799700 CATTTTGAAAACATCATGCACTGTAAGTCTTACGGATGACCCGAAGGTTTTGAAAACAT
66 CTTTTTGAAAACATCATGCACTGTAAGTCTTATGGATGACCCAAAGGTTTTGAAAACAT
799759 AAAAAAACTC
Statistics
Matches: 630, Mismatches: 37, Indels: 5
0.94 0.06 0.01
Matches are distributed among these distances:
271 35 0.06
272 127 0.20
273 134 0.21
274 334 0.53
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.26
Consensus pattern (274 bp):
CATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGGTTTGAAAATATCAAAAAGCTCCCGAAGG
CTTTTTGAAAACATCATGCACTGTAAGTCTTATGGATGACCCAAAGGTTTTGAAAACATCCTGCA
CTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAAGCTCTCGAAGGCTTTTTGA
AAACATCCTGCACTGTAGGTCTTATAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCAA
AGGCTTTTTGAAAG
Found at i:799389 original size:76 final size:76
Alignment explanation
Indices: 799193--799487 Score: 423
Period size: 76 Copynumber: 3.9 Consensus size: 76
799183 TTATGGATGA
799193 CCCAAAGG--TTTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAAC
1 CCCAAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAAC
799256 ATCAAAAAAGCT
66 ATC-AAAAAGCT
* * * * *
799268 CTCGAAGGCTTTTTGAAAACATCCTACACTGTAGGTCTTATAGATGACCCGAAGGCTTTAAAAAC
1 CCCAAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAAC
799333 ATCAAAAAGCT
66 ATCAAAAAGCT
* * *
799344 CCCAAAGGCTTTTTGAAAGCATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGGTTTGAAAAT
1 CCCAAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAAC
799409 ATCAAAAAGCT
66 ATCAAAAAGCT
** * * ** * *
799420 CCTGAAGGCTTTTTGAAAACATCATGTACTGTAGGTCTTATGGATGACCCAAAGGTTTTGAAAAC
1 CCCAAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAAC
799485 ATC
66 ATC
799488 CTGCACTGTA
Statistics
Matches: 195, Mismatches: 23, Indels: 3
0.88 0.10 0.01
Matches are distributed among these distances:
75 6 0.03
76 134 0.69
77 55 0.28
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (76 bp):
CCCAAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAAC
ATCAAAAAGCT
Found at i:799496 original size:45 final size:45
Alignment explanation
Indices: 799430--799533 Score: 145
Period size: 45 Copynumber: 2.3 Consensus size: 45
799420 CCTGAAGGCT
* **
799430 TTTTGAAAACATCATGTACTGTAGGTCTTATGGATGACCCAAAGG
1 TTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCAAAGG
* *
799475 TTTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGG
1 TTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCAAAGG
* *
799520 CTTTAAAAACATCA
1 TTTTGAAAACATCA
799534 AAAAAGCTCT
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 51 1.00
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (45 bp):
TTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCAAAGG
Found at i:799502 original size:121 final size:122
Alignment explanation
Indices: 799344--799609 Score: 419
Period size: 122 Copynumber: 2.2 Consensus size: 122
799334 TCAAAAAGCT
* * * *
799344 CCCAAAGGCTTTTTGAAAGCATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGGTTTGAAAAT
1 CCCAAAGG--TTTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTAAAAAC
* *
799409 ATC-AAAAAGCTC-CTGAAGGCTTTTTGAAAACATCATGTACTGTAGGTCTTATGGATGA
64 ATCAAAAAAGCTCTC-GAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTATAGATGA
799467 CCCAAAGGTTTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTAAAAACAT
1 CCCAAAGGTTTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTAAAAACAT
*
799532 CAAAAAAGCTCTCGAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTATAGATGA
66 CAAAAAAGCTCTCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTATAGATGA
*
799589 CCCAAAGGCTTTGAAAACATC
1 CCCAAAGGTTTTGAAAACATC
799610 AAAAGCTCCC
Statistics
Matches: 133, Mismatches: 8, Indels: 5
0.91 0.05 0.03
Matches are distributed among these distances:
121 54 0.41
122 70 0.53
123 9 0.07
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.27
Consensus pattern (122 bp):
CCCAAAGGTTTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTAAAAACAT
CAAAAAAGCTCTCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTATAGATGA
Found at i:799531 original size:197 final size:196
Alignment explanation
Indices: 799278--799683 Score: 625
Period size: 197 Copynumber: 2.1 Consensus size: 196
799268 CTCGAAGGCT
*
799278 TTTTGAAAACATCCTACACTGTAGGTCTTATAGATGACCCGAAGGCTTTAAAAACATC-AAAAAG
1 TTTTGAAAACATCCTACACTGTAGGTCTTACAGATGACCCGAAGGCTTTAAAAACATCAAAAAAG
* * *
799342 CTCCCAAAGGCTTTTTGAAAGCATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGGTTTGAAA
66 CTCCCAAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCAAAGGCTTTGAAA
* ** * **
799407 ATATCAAAAAGCTCCTGAAGGCTTTTTGAAAACATCATGTACTGTAGGTCTTATGGATGACCCAA
131 ACATC-AAAAGCTCCCAAAGGC-TTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCAA
799472 AGG
194 AGG
*
799475 TTTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTAAAAACATCAAAAAAG
1 TTTTGAAAACATCCTACACTGTAGGTCTTACAGATGACCCGAAGGCTTTAAAAACATCAAAAAAG
* * *
799540 CTCTCGAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTATAGATGACCCAAAGGCTTTGAAA
66 CTCCCAAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCAAAGGCTTTGAAA
* * *
799605 ACATCAAAAGCTCCCAAAGGCTTTTGAAAGCATCCTGCACTGTAGGTCTTACAGATGACCCGAAG
131 ACATCAAAAGCTCCCAAAGGCTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCAAAG
799670 G
196 G
*
799671 GTTTGAAAACATC
1 TTTTGAAAACATC
799684 AAAAAGCTCC
Statistics
Matches: 190, Mismatches: 18, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
196 51 0.27
197 70 0.37
198 69 0.36
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.26
Consensus pattern (196 bp):
TTTTGAAAACATCCTACACTGTAGGTCTTACAGATGACCCGAAGGCTTTAAAAACATCAAAAAAG
CTCCCAAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCAAAGGCTTTGAAA
ACATCAAAAGCTCCCAAAGGCTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCAAAG
G
Found at i:799738 original size:76 final size:76
Alignment explanation
Indices: 799475--799801 Score: 475
Period size: 76 Copynumber: 4.4 Consensus size: 76
799465 GACCCAAAGG
*
799475 TTTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTAAAAACATCAAAAAAG
1 TTTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAACATC-AAAAAG
*
799540 CTCTCGAAGGCT
65 CTCCCGAAGGCT
* *
799552 TTTTGAAAACATCCTGCACTGTAGGTCTTATAGATGACCCAAAGGCTTTGAAAACATC-AAAAGC
1 TTTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGC
*
799616 TCCCAAAGGC-
66 TCCCGAAGGCT
* *
799626 TTTTGAAAGCATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGGTTTGAAAACATCAAAAAGC
1 TTTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGC
* *
799691 TCCTGAAGGCA
66 TCCCGAAGGCT
* * * * * *
799702 TTTTGAAAACATCATGCACTGTAAGTCTTACGGATGACCCGAAGGTTTTGAAAACATAAAAAAAC
1 TTTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGC
799767 TCCCGAAGGCT
66 TCCCGAAGGCT
799778 TTTTGAAAACA---TGCACTGTAGGTC
1 TTTTGAAAACATCCTGCACTGTAGGTC
799802 CCCGAAGGCT
Statistics
Matches: 227, Mismatches: 21, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
73 12 0.05
74 54 0.24
75 28 0.12
76 78 0.34
77 55 0.24
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (76 bp):
TTTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGC
TCCCGAAGGCT
Found at i:799739 original size:150 final size:151
Alignment explanation
Indices: 799467--799801 Score: 475
Period size: 150 Copynumber: 2.2 Consensus size: 151
799457 TTATGGATGA
799467 CCCAAAGG-TTTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTAAAAACA
1 CCCAAAGGCTTTTG-AAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTAAAAACA
* * * *
799531 TCAAAAAAGCTCTCGAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTATAGATGACCCAAAG
65 TCAAAAAAGCTCTCGAAGGCATTTTGAAAACATCATGCACTGTAAGTCTTACAGATGACCCAAAG
* *
799596 GCTTTGAAAACAT-CAAAAGCT
130 GCTTTGAAAACATAAAAAAACT
* *
799617 CCCAAAGGCTTTTGAAAGCATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGGTTTGAAAACA
1 CCCAAAGGCTTTTGAAA-CATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTAAAAACA
* *
799682 TC-AAAAAGCTC-CTGAAGGCATTTTGAAAACATCATGCACTGTAAGTCTTACGGATGACCCGAA
65 TCAAAAAAGCTCTC-GAAGGCATTTTGAAAACATCATGCACTGTAAGTCTTACAGATGACCCAAA
*
799745 GGTTTTGAAAACATAAAAAAACT
129 GGCTTTGAAAACATAAAAAAACT
* *
799768 CCCGAAGGCTTTTTGAAA-A-CATGCACTGTAGGTC
1 CCCAAAGGC-TTTTGAAACATCCTGCACTGTAGGTC
799802 CCCGAAGGCT
Statistics
Matches: 167, Mismatches: 13, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
149 15 0.09
150 78 0.47
151 66 0.40
152 8 0.05
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.24
Consensus pattern (151 bp):
CCCAAAGGCTTTTGAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTAAAAACAT
CAAAAAAGCTCTCGAAGGCATTTTGAAAACATCATGCACTGTAAGTCTTACAGATGACCCAAAGG
CTTTGAAAACATAAAAAAACT
Found at i:800480 original size:20 final size:20
Alignment explanation
Indices: 800444--800518 Score: 123
Period size: 20 Copynumber: 3.6 Consensus size: 20
800434 AATAAAACTT
800444 TCATCTTTGAAAAGAGAATCTA
1 TCATCTTTG--AAGAGAATCTA
800466 TCATCTTTGAAGAGAATCTA
1 TCATCTTTGAAGAGAATCTA
*
800486 TCATCTTTGAAGATAATCTA
1 TCATCTTTGAAGAGAATCTA
800506 TCATCTTTGAAGA
1 TCATCTTTGAAGA
800519 ATGTAGATGT
Statistics
Matches: 52, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
20 43 0.83
22 9 0.17
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (20 bp):
TCATCTTTGAAGAGAATCTA
Found at i:804665 original size:19 final size:18
Alignment explanation
Indices: 804632--804667 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
804622 TTGTTGATCA
*
804632 CATTTTCAATTAATTCTT
1 CATTTTCAATAAATTCTT
804650 CATTTATCAATAAATTCT
1 CATTT-TCAATAAATTCT
804668 CGAATTCCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.33, C:0.17, G:0.00, T:0.50
Consensus pattern (18 bp):
CATTTTCAATAAATTCTT
Found at i:805685 original size:12 final size:12
Alignment explanation
Indices: 805661--805694 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
805651 GCAAAGGTGC
805661 AAATATAAAATGA
1 AAATAT-AAATGA
*
805674 AAATGTAAATGA
1 AAATATAAATGA
805686 AAATATAAA
1 AAATATAAA
805695 AATGCAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.68, C:0.00, G:0.09, T:0.24
Consensus pattern (12 bp):
AAATATAAATGA
Found at i:805698 original size:20 final size:19
Alignment explanation
Indices: 805673--805724 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 19
805663 ATATAAAATG
*
805673 AAAATGTAAATGAAAATATA
1 AAAATGCAAATGAAAATA-A
*
805693 AAAATGCAAATACAAAATAA
1 AAAATGCAAAT-GAAAATAA
805713 AAAATGCAAATG
1 AAAATGCAAATG
805725 TAATGAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 22 0.79
21 6 0.21
ACGTcount: A:0.65, C:0.06, G:0.10, T:0.19
Consensus pattern (19 bp):
AAAATGCAAATGAAAATAA
Found at i:808979 original size:147 final size:148
Alignment explanation
Indices: 808639--809046 Score: 407
Period size: 147 Copynumber: 2.7 Consensus size: 148
808629 ATATATTTCT
* ** * * * *
808639 TATA-TTTTTATAAATAAGATATTTATTTACTTAGAAATATAAGAAAATAACTTCTAATTACTTT
1 TATATTTTTTATAAATATGATATTTATTTTTTTA-AAATATCAGAAAATGACATCTAATTATTTT
* **
808703 AAGACAGCCCCTTTCTTAATATTAAAAAAATAAATAAATATTAATAAAATATTTCTCTAAAAATA
65 AAGAC--TCCCTTTCTTAATATT-AAAAAATAAATAAATATT-ATAAAATATTGATCTAAAAATA
*
808768 ATTAAAAAAATAAAATAAATTAA
126 ATTAAAAAAATAAAACAAATTAA
** * *
808791 TATATAATTTATAAAAGTATGATATTTATTTATTTAAAAATATCAGAAAATGACATCTATTTATT
1 TATATTTTTTAT-AAA-TATGATATTTATTT-TTTTAAAATATCAGAAAATGACATCTAATTATT
*
808856 TTAAGACTCCCTTTCTTAATGTTAAAAAATAAATAAATATTA-AAAATA-TGAT-T-AAAATAAT
63 TTAAGACTCCCTTTCTTAATATTAAAAAATAAATAAATATTATAAAATATTGATCTAAAAATAA-
*
808917 TTATATAAAATTAAAACAAA-T-A
127 TTA-A-AAAAATAAAACAAATTAA
* * * * ** *
808939 TATATTTTTTTATAAACATGATATTTATTATTTTTAAAATACCAGAATAGGGTATCTAGTTATTT
1 TATA-TTTTTTATAAATATGATATTTATT-TTTTTAAAATATCAGAAAATGACATCTAATTATTT
* *
809004 TAAGACTGCCATTTCTTAATATTTAAAAATAAATAAATATTAT
64 TAAGACT-CCCTTTCTTAATATTAAAAAATAAATAAATATTAT
809047 TATTTAATCA
Statistics
Matches: 215, Mismatches: 30, Indels: 25
0.80 0.11 0.09
Matches are distributed among these distances:
147 53 0.25
148 44 0.20
149 10 0.05
150 18 0.08
151 1 0.00
152 22 0.10
153 19 0.09
154 3 0.01
155 43 0.20
156 2 0.01
ACGTcount: A:0.48, C:0.07, G:0.05, T:0.40
Consensus pattern (148 bp):
TATATTTTTTATAAATATGATATTTATTTTTTTAAAATATCAGAAAATGACATCTAATTATTTTA
AGACTCCCTTTCTTAATATTAAAAAATAAATAAATATTATAAAATATTGATCTAAAAATAATTAA
AAAAATAAAACAAATTAA
Found at i:809076 original size:26 final size:25
Alignment explanation
Indices: 809022--809089 Score: 63
Period size: 26 Copynumber: 2.7 Consensus size: 25
809012 CCATTTCTTA
*
809022 ATATTTAA-AAATAAATAAATATTAT
1 ATATTTAATAAAT-AATATATATTAT
809047 -TATTTAATCAAATATATATATATT-T
1 ATATTTAAT-AAATA-ATATATATTAT
809072 ATA-TTAATAAAATAATAT
1 ATATTTAAT-AAATAATAT
809090 TTAATAATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
24 11 0.30
25 12 0.32
26 14 0.38
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.44
Consensus pattern (25 bp):
ATATTTAATAAATAATATATATTAT
Found at i:810468 original size:3 final size:3
Alignment explanation
Indices: 810460--810491 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
810450 ATTTATTAAT
810460 TAA TAA TAA TAA -AA T-A TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
810492 TTTAAAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
2 4 0.15
3 23 0.85
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:812114 original size:20 final size:20
Alignment explanation
Indices: 812086--812142 Score: 96
Period size: 20 Copynumber: 2.9 Consensus size: 20
812076 ATATATGACC
* *
812086 CTAGGGTATTAATACTATAG
1 CTAGAGTATCAATACTATAG
812106 CTAGAGTATCAATACTATAG
1 CTAGAGTATCAATACTATAG
812126 CTAGAGTATCAATACTA
1 CTAGAGTATCAATACTA
812143 CCCACTTTGT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.32
Consensus pattern (20 bp):
CTAGAGTATCAATACTATAG
Found at i:818014 original size:11 final size:10
Alignment explanation
Indices: 817998--818022 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
817988 TATTTTTTAG
817998 AAAAAAAAAC
1 AAAAAAAAAC
818008 AAAAAAAAAC
1 AAAAAAAAAC
818018 AAAAA
1 AAAAA
818023 GCCAAAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:824561 original size:32 final size:32
Alignment explanation
Indices: 824509--824617 Score: 130
Period size: 32 Copynumber: 3.4 Consensus size: 32
824499 GTGTATGAGA
* *
824509 CACAATAGAGTCAGTATTGCATTCAGATAATG
1 CACAATAAAGTCAATATTGCATTCAGATAATG
* * * *
824541 CATAGTAGAA-TCAATGTTGCATTCAGGTAATG
1 CACAATA-AAGTCAATATTGCATTCAGATAATG
*
824573 CACAATAAAGTTAATATTGCATTCAGATAATG
1 CACAATAAAGTCAATATTGCATTCAGATAATG
*
824605 CACAATAGAGTCA
1 CACAATAAAGTCA
824618 GTGTAACATT
Statistics
Matches: 62, Mismatches: 13, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
31 2 0.03
32 59 0.95
33 1 0.02
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.28
Consensus pattern (32 bp):
CACAATAAAGTCAATATTGCATTCAGATAATG
Found at i:824638 original size:32 final size:32
Alignment explanation
Indices: 824592--824668 Score: 100
Period size: 32 Copynumber: 2.4 Consensus size: 32
824582 GTTAATATTG
*
824592 CATTCAGATAATGCACAATAGAGTCAGTGTAA
1 CATTCAGATAATGCACAACAGAGTCAGTGTAA
* * * * *
824624 CATTTAGATGATGCACAACATAGTTAGTGTTA
1 CATTCAGATAATGCACAACAGAGTCAGTGTAA
824656 CATTCAGATAATG
1 CATTCAGATAATG
824669 TATAGGAACA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (32 bp):
CATTCAGATAATGCACAACAGAGTCAGTGTAA
Found at i:824638 original size:64 final size:64
Alignment explanation
Indices: 824509--824668 Score: 176
Period size: 64 Copynumber: 2.5 Consensus size: 64
824499 GTGTATGAGA
* * * * ** *
824509 CACAATAGAGTCAGTATTGCATTCAGATAATGCATAGTAGAATCAATGTTGCATTCAGGTAATG
1 CACAATAAAGTTAGTATTGCATTCAGATAATGCACAATAGAATCAATGTAACATTCAGATAATG
* * * * *
824573 CACAATAAAGTTAATATTGCATTCAGATAATGCACAATAGAGTCAGTGTAACATTTAGATGATG
1 CACAATAAAGTTAGTATTGCATTCAGATAATGCACAATAGAATCAATGTAACATTCAGATAATG
* * * *
824637 CACAACATAGTTAGTGTTACATTCAGATAATG
1 CACAATAAAGTTAGTATTGCATTCAGATAATG
824669 TATAGGAACA
Statistics
Matches: 79, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
64 79 1.00
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (64 bp):
CACAATAAAGTTAGTATTGCATTCAGATAATGCACAATAGAATCAATGTAACATTCAGATAATG
Found at i:827067 original size:20 final size:20
Alignment explanation
Indices: 827042--827117 Score: 143
Period size: 20 Copynumber: 3.8 Consensus size: 20
827032 GGGTTCGAAT
*
827042 ATCGATATTGGATGAACATA
1 ATCGATATTGGATGAACAGA
827062 ATCGATATTGGATGAACAGA
1 ATCGATATTGGATGAACAGA
827082 ATCGATATTGGATGAACAGA
1 ATCGATATTGGATGAACAGA
827102 ATCGATATTGGATGAA
1 ATCGATATTGGATGAA
827118 TTAGGACAAA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 55 1.00
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (20 bp):
ATCGATATTGGATGAACAGA
Found at i:836379 original size:25 final size:25
Alignment explanation
Indices: 836350--836400 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
836340 TAACTAATGC
836350 AATAGAAGAAATTAATGGTTTTATA
1 AATAGAAGAAATTAATGGTTTTATA
*
836375 AATAGTAGAAATTAATGGTTTTATA
1 AATAGAAGAAATTAATGGTTTTATA
836400 A
1 A
836401 TTTTGGGCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.47, C:0.00, G:0.16, T:0.37
Consensus pattern (25 bp):
AATAGAAGAAATTAATGGTTTTATA
Found at i:841377 original size:16 final size:18
Alignment explanation
Indices: 841345--841379 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
841335 ATATAAAAAC
841345 ATAAAATATAGGATAAAT
1 ATAAAATATAGGATAAAT
841363 ATAAAA-ATA-GATAAAT
1 ATAAAATATAGGATAAAT
841379 A
1 A
841380 AATGAGTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 3 0.18
18 6 0.35
ACGTcount: A:0.66, C:0.00, G:0.09, T:0.26
Consensus pattern (18 bp):
ATAAAATATAGGATAAAT
Found at i:841978 original size:37 final size:36
Alignment explanation
Indices: 841928--842065 Score: 172
Period size: 37 Copynumber: 3.8 Consensus size: 36
841918 GTGCTTGTGG
* * * * *
841928 ATCCTATCTTTAGGAATTTAAATCTTAGTAGAACTCT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTA-AAATCT
* *
841965 ATCCTATTTTTAGGAGTTTGAATCCTAGCAAAATGTT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAAAAT-CT
*
842002 ATCCTATTTTTAGGAGTTTGAATCCTA--AAATTCT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAAAATCT
842036 ATCCTATTTTTAGGAGTTTGAATCCTAGTA
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTA
842066 GGACGAAAAA
Statistics
Matches: 89, Mismatches: 9, Indels: 7
0.85 0.09 0.07
Matches are distributed among these distances:
34 28 0.31
35 4 0.04
36 4 0.04
37 53 0.60
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.42
Consensus pattern (36 bp):
ATCCTATTTTTAGGAGTTTGAATCCTAGTAAAATCT
Found at i:842039 original size:34 final size:35
Alignment explanation
Indices: 841962--842062 Score: 161
Period size: 34 Copynumber: 2.9 Consensus size: 35
841952 TTAGTAGAAC
841962 TCTATCCTATTTTTAGGAGTTTGAATCCTAGCAAAATG
1 TCTATCCTATTTTTAGGAGTTTGAATCCT---AAAATG
842000 T-TATCCTATTTTTAGGAGTTTGAATCCTAAAAT-
1 TCTATCCTATTTTTAGGAGTTTGAATCCTAAAATG
842033 TCTATCCTATTTTTAGGAGTTTGAATCCTA
1 TCTATCCTATTTTTAGGAGTTTGAATCCTA
842063 GTAGGACGAA
Statistics
Matches: 62, Mismatches: 0, Indels: 6
0.91 0.00 0.09
Matches are distributed among these distances:
33 1 0.02
34 33 0.53
37 27 0.44
38 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.14, T:0.44
Consensus pattern (35 bp):
TCTATCCTATTTTTAGGAGTTTGAATCCTAAAATG
Found at i:842898 original size:105 final size:105
Alignment explanation
Indices: 842591--843107 Score: 731
Period size: 105 Copynumber: 5.0 Consensus size: 105
842581 CATTGTTCCA
* * ** *
842591 AGTCCAATATCCTCCGTCGTGAAGTTGAAATTGGCTCTG-GAACCGGGAAATTGTTTGTTGACAA
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAG-ATTGGGAAGTTG-TTGTTGACAA
* * * * *
842655 CCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCG
64 GCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
** *
842697 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGAATCTGA-A-T--GAAATT-TTGTTGACAAGC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAAGC
842757 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
842797 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAAGC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAAGC
*
842862 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGG
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* *
842902 AGTCCAATCTCTTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAAGC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAAGC
* *
842967 AGCGGTCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTGA
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * * * *
843007 AGTCCAATATCCTTCGTTGTGAAGCTGAAATTGACTCTGAAATTGAGAAGTTGTTTGTTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTG-TTGTTGACAAG
* * *
843072 CAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTG
65 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTG
843108 CCTCGAGTGC
Statistics
Matches: 374, Mismatches: 30, Indels: 14
0.89 0.07 0.03
Matches are distributed among these distances:
100 85 0.23
101 1 0.00
102 7 0.02
104 5 0.01
105 199 0.53
106 77 0.21
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.34
Consensus pattern (105 bp):
AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAAGC
AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
Found at i:844035 original size:65 final size:65
Alignment explanation
Indices: 843931--844111 Score: 299
Period size: 65 Copynumber: 2.8 Consensus size: 65
843921 GACAAAATTT
*
843931 TGTTTTAAGAGAAACTGTCTCAAGAGAGACGAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACGAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
*
843996 TGTTTCAAGAGAAACTATCTCAAGAGAGACGAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACGAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
* * **
844061 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAA
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACGAAA-TTCATTTCAAGGGAAA
844112 CTATCTCAAG
Statistics
Matches: 108, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
65 94 0.87
66 14 0.13
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.31
Consensus pattern (65 bp):
TGTTTCAAGAGAAACTGTCTCAAGAGAGACGAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
Found at i:844102 original size:102 final size:102
Alignment explanation
Indices: 843996--844351 Score: 577
Period size: 102 Copynumber: 3.5 Consensus size: 102
843986 TCAATGTTTA
* *
843996 TGTTTCAAGAGAAACTATCTCAAGAGAGACGAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
844061 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
66 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
* *
844098 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGCAAATATTTTCAATGTTTA
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
* * **
844163 TGTTTCAAGAGAAATTGTCTCAATGGAGACGGAATTT
66 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
*
844200 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAACTCATTTCAAGGGAAATGTTTTCAATGTTTA
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
* *
844265 TGTTTCAAGAGAAACTGCCTCAAGGGAGAAAAAATTT
66 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
* * **
844302 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAGTTTGTTTCAAGGGAAA
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAA
844352 CTGTCTCAAG
Statistics
Matches: 232, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
102 232 1.00
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (102 bp):
TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
Found at i:844112 original size:37 final size:37
Alignment explanation
Indices: 844061--844369 Score: 189
Period size: 37 Copynumber: 8.9 Consensus size: 37
844051 TCAATGTTTA
* *
844061 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
*
844098 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAA-TT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
** * * * *
844134 CATTTCAAGGCAAA-TATTTTC-A-A-TG------TTT
1 TGTTTCAAGGGAAACT-GTCTCAAGAGAGACAAAATTT
* * **
844162 ATGTTTCAAGAGAAATTGTCTCAATG-GAGACGGAATTT
1 -TGTTTCAAGGGAAACTGTCTCAA-GAGAGACAAAATTT
* *
844200 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAA-CT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
** * *
844236 CATTTCAAGGGAAA-TGTTTTC-A-A-TG------TTT
1 TGTTTCAAGGGAAACTG-TCTCAAGAGAGACAAAATTT
* * * *
844264 ATGTTTCAAGAGAAACTGCCTCAAGGGAGAAAAAATTT
1 -TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
*
844302 TGTTTCAAGGGAAACTGTCTCAAGAGAGAC-AAAGTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
844338 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAA
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAA
844370 TGGTGAGCAC
Statistics
Matches: 203, Mismatches: 40, Indels: 58
0.67 0.13 0.19
Matches are distributed among these distances:
28 3 0.01
29 26 0.13
30 5 0.02
32 2 0.01
33 2 0.01
34 2 0.01
35 4 0.02
36 68 0.33
37 85 0.42
38 6 0.03
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.28
Consensus pattern (37 bp):
TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
Found at i:844347 original size:36 final size:36
Alignment explanation
Indices: 844265--844369 Score: 156
Period size: 36 Copynumber: 2.9 Consensus size: 36
844255 TCAATGTTTA
* * * * *
844265 TGTTTCAAGAGAAACTGCCTCAAGGGAGAAAAAATTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAG-ACAAAGTT
844302 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAGTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAGTT
844338 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAA
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAA
844370 TGGTGAGCAC
Statistics
Matches: 63, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
36 38 0.60
37 25 0.40
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.24
Consensus pattern (36 bp):
TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAGTT
Found at i:845256 original size:22 final size:22
Alignment explanation
Indices: 845230--845278 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
845220 TTGTGTTTGG
* *
845230 TCAAAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGACATTGGATGC
845252 TCAAAGGTTTGACATTGGATGC
1 TCAAAGGTTTGACATTGGATGC
845274 TCAAA
1 TCAAA
845279 AGATTGATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (22 bp):
TCAAAGGTTTGACATTGGATGC
Found at i:845285 original size:22 final size:22
Alignment explanation
Indices: 845242--845285 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
845232 AAAGGTTTGG
* * *
845242 CATTTGATGCTCAAAGGTTTGA
1 CATTGGATGCTCAAAAGATTGA
845264 CATTGGATGCTCAAAAGATTGA
1 CATTGGATGCTCAAAAGATTGA
845286 TGGGGTAGCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.32
Consensus pattern (22 bp):
CATTGGATGCTCAAAAGATTGA
Found at i:845981 original size:16 final size:15
Alignment explanation
Indices: 845935--846008 Score: 51
Period size: 16 Copynumber: 4.8 Consensus size: 15
845925 TGATTTTTGC
*
845935 TTTTTT-TTCCTTTT
1 TTTTTTGTTCTTTTT
* * *
845949 GTTCTTGTTTCTCTTT
1 TTTTTTG-TTCTTTTT
* *
845965 TTCTTTGTTTTTTTTT
1 TTTTTTG-TTCTTTTT
*
845981 TTTTTTGCTTCTTTTC
1 TTTTTTG-TTCTTTTT
845997 TTTTTTGTTCTT
1 TTTTTTGTTCTT
846009 GATTGGATCT
Statistics
Matches: 45, Mismatches: 13, Indels: 3
0.74 0.21 0.05
Matches are distributed among these distances:
14 4 0.09
15 5 0.11
16 36 0.80
ACGTcount: A:0.00, C:0.14, G:0.07, T:0.80
Consensus pattern (15 bp):
TTTTTTGTTCTTTTT
Found at i:845995 original size:15 final size:15
Alignment explanation
Indices: 845963--846008 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
845953 TTGTTTCTCT
845963 TTTTCTTTGTTT-TT-
1 TTTTCTTT-TTTGTTC
845977 TTTT-TTTTTTGCTTC
1 TTTTCTTTTTTG-TTC
845992 TTTTCTTTTTTGTTC
1 TTTTCTTTTTTGTTC
846007 TT
1 TT
846009 GATTGGATCT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
12 3 0.11
13 3 0.11
14 6 0.21
15 9 0.32
16 7 0.25
ACGTcount: A:0.00, C:0.11, G:0.07, T:0.83
Consensus pattern (15 bp):
TTTTCTTTTTTGTTC
Found at i:847152 original size:8 final size:8
Alignment explanation
Indices: 847136--847174 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
847126 AATGTAGATG
847136 AAAATGCA
1 AAAATGCA
*
847144 AAAAGGCA
1 AAAATGCA
847152 AAAATGC-
1 AAAATGCA
847159 AAAATGCA
1 AAAATGCA
*
847167 AGAATGCA
1 AAAATGCA
847175 CGAAATGTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
7 7 0.26
8 20 0.74
ACGTcount: A:0.59, C:0.13, G:0.18, T:0.10
Consensus pattern (8 bp):
AAAATGCA
Found at i:847162 original size:15 final size:15
Alignment explanation
Indices: 847136--847174 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
847126 AATGTAGATG
847136 AAAATGCAAAAAGGCA
1 AAAATGC-AAAAGGCA
*
847152 AAAATGCAAAATGCA
1 AAAATGCAAAAGGCA
*
847167 AGAATGCA
1 AAAATGCA
847175 CGAAATGTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 14 0.67
16 7 0.33
ACGTcount: A:0.59, C:0.13, G:0.18, T:0.10
Consensus pattern (15 bp):
AAAATGCAAAAGGCA
Found at i:847718 original size:18 final size:18
Alignment explanation
Indices: 847695--847734 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
847685 ATTAGTCTTT
847695 CAGAAGTGGATGTGAATC
1 CAGAAGTGGATGTGAATC
847713 CAGAAGTGGATGTGAATC
1 CAGAAGTGGATGTGAATC
847731 CAGA
1 CAGA
847735 CTTGAAGGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.33, T:0.20
Consensus pattern (18 bp):
CAGAAGTGGATGTGAATC
Found at i:849886 original size:16 final size:18
Alignment explanation
Indices: 849854--849888 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
849844 ATATAAAAAC
849854 ATAAAATATAGGATAAAT
1 ATAAAATATAGGATAAAT
849872 ATAAAA-ATA-GATAAAT
1 ATAAAATATAGGATAAAT
849888 A
1 A
849889 AATGAGTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 3 0.18
18 6 0.35
ACGTcount: A:0.66, C:0.00, G:0.09, T:0.26
Consensus pattern (18 bp):
ATAAAATATAGGATAAAT
Found at i:850523 original size:37 final size:36
Alignment explanation
Indices: 850438--850573 Score: 152
Period size: 37 Copynumber: 3.8 Consensus size: 36
850428 GTGCTTGTGG
* * * * * *
850438 ATCCTATCTTTAGGAATTTAAATCTTAGTAGAACTCT
1 ATCCTATTTTTAGGAGTTTGAATCCTAG-AAAATTCT
* *
850475 ATCTTAATTTTAGGAGTTTGAATCCTAGCAAAATGT-T
1 ATCCTATTTTTAGGAGTTTGAATCCTAG-AAAAT-TCT
850512 ATCCTATTTTTAGGAGTTTGAATCCT--AAAATTCT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGAAAATTCT
850546 ATCCTATTTTTAGGAGTTTGAATCCTAG
1 ATCCTATTTTTAGGAGTTTGAATCCTAG
850574 TAGGACGAAA
Statistics
Matches: 84, Mismatches: 11, Indels: 9
0.81 0.11 0.09
Matches are distributed among these distances:
33 1 0.01
34 32 0.38
37 50 0.60
38 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.42
Consensus pattern (36 bp):
ATCCTATTTTTAGGAGTTTGAATCCTAGAAAATTCT
Found at i:850549 original size:34 final size:35
Alignment explanation
Indices: 850472--850572 Score: 143
Period size: 34 Copynumber: 2.9 Consensus size: 35
850462 TTAGTAGAAC
* *
850472 TCTATCTTAATTTTAGGAGTTTGAATCCTAGCAAAATG
1 TCTATCCTATTTTTAGGAGTTTGAATCCT---AAAATG
850510 T-TATCCTATTTTTAGGAGTTTGAATCCTAAAAT-
1 TCTATCCTATTTTTAGGAGTTTGAATCCTAAAATG
850543 TCTATCCTATTTTTAGGAGTTTGAATCCTA
1 TCTATCCTATTTTTAGGAGTTTGAATCCTA
850573 GTAGGACGAA
Statistics
Matches: 60, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
33 1 0.02
34 33 0.55
37 25 0.42
38 1 0.02
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.44
Consensus pattern (35 bp):
TCTATCCTATTTTTAGGAGTTTGAATCCTAAAATG
Found at i:857898 original size:182 final size:182
Alignment explanation
Indices: 857533--858193 Score: 968
Period size: 182 Copynumber: 3.6 Consensus size: 182
857523 GATCCAAATA
* *
857533 AAAAATGTATCGATCCATATCAATATAACAGGTAAAAATATGACAAAAACGGTGT--AATTATGA
1 AAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAAACGGTCTCGAA--ATGA
* * * * * *
857596 CAAAATCGGTAAAGTGCTATCGGATATGTTGAAAGTATCGATTAGATTGAA-ATAAGTATCGACA
64 CAAAATCGGTAAAGCGCTACCGGATATATTGAAAGTGTCGA-TA-CTTTAATATAAGTATCGACA
* *
857660 CTTTGGGAATTTAAAAGAGAATCAGTTTTAGCGCCTATGAAGTGTCGATACTTTAT
127 CTTTGGGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAGTGTCGATACTTTAT
* * * * *
857716 AAAAATGTATTGATCCATAACGATATAACAGGTAAAAATATGACAAAACCGATATCGAAATGACA
1 AAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAAACGGTCTCGAAATGACA
* * *
857781 AAATCAGTAAAGAGCTACAGGATATATTGAAAGTGTCGATACTTTAATATAAGTATCGACACTTT
66 AAATCGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTAATATAAGTATCGACACTTT
* *
857846 GGGAATTTAAAAGAGAAGCAATTTTAGCGCCTATAAAGTGTCGATGCTTTAT
131 GGGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAGTGTCGATACTTTAT
857898 AAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAAACGGTCTCGAAATGACA
1 AAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAAACGGTCTCGAAATGACA
* *
857963 AAACCGGTAAAGCGCTACCGGATATATTAAAAGTGTCGATACTTTAATATAAGTATCGACACTTT
66 AAATCGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTAATATAAGTATCGACACTTT
* ** * * *
858028 GGGAATTAAAAAGAGAAGCAGTAATAGCGCATATAAAATTTCGATACTTTAT
131 GGGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAGTGTCGATACTTTAT
* * * *
858080 AAAAACGTATCGATCCATAACGATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGAAA
1 AAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAAACGGTCTCGAAATGACA
*
858145 AAATCGATAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTAATA
66 AAATCGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTAATA
858194 AGTACGCGTA
Statistics
Matches: 432, Mismatches: 43, Indels: 7
0.90 0.09 0.01
Matches are distributed among these distances:
181 4 0.01
182 338 0.78
183 88 0.20
185 2 0.00
ACGTcount: A:0.43, C:0.13, G:0.18, T:0.27
Consensus pattern (182 bp):
AAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAAACGGTCTCGAAATGACA
AAATCGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTAATATAAGTATCGACACTTT
GGGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAGTGTCGATACTTTAT
Found at i:860095 original size:22 final size:23
Alignment explanation
Indices: 860043--860099 Score: 71
Period size: 24 Copynumber: 2.5 Consensus size: 23
860033 AAAAAGTTTT
* *
860043 ATTTTTTTATATAAAATGATAGT
1 ATTTTATTATATAAAATGATAGA
*
860066 ATAGTTATTATATAAAATGATA-A
1 AT-TTTATTATATAAAATGATAGA
860089 ATTTTATTATA
1 ATTTTATTATA
860100 AATGCAGGTT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
22 8 0.28
23 4 0.14
24 17 0.59
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (23 bp):
ATTTTATTATATAAAATGATAGA
Found at i:860969 original size:29 final size:29
Alignment explanation
Indices: 860927--860984 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
860917 TTGAATAAAA
*
860927 GAAAACTTGATTTTGATTTTTATCATGTT
1 GAAAACTTAATTTTGATTTTTATCATGTT
860956 GAAAACTTAATTTTGATTTTTATCATGTT
1 GAAAACTTAATTTTGATTTTTATCATGTT
860985 ATTGTGAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.29, C:0.07, G:0.12, T:0.52
Consensus pattern (29 bp):
GAAAACTTAATTTTGATTTTTATCATGTT
Found at i:862420 original size:19 final size:19
Alignment explanation
Indices: 862396--862440 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
862386 AATGTAGGGT
*
862396 TAATTTTGTATAATATTTA
1 TAATTTTGTATAAGATTTA
*
862415 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
862434 TAATTTT
1 TAATTTT
862441 CATGTGAATG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.58
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:863736 original size:201 final size:201
Alignment explanation
Indices: 862892--864458 Score: 2235
Period size: 201 Copynumber: 7.8 Consensus size: 201
862882 GTAAACATAT
* * ** ** *
862892 GTGTCGATACATTTACAAAAAAATATCGATCCCAAAAAGTTCGAAACCCATAATTATAATGTAAT
1 GTGTCGATACATTTA-TAAAAAGTATCGATCGTAAAAACATCGAAACACATAATTATAATGTAAT
* * * * * *
862957 AGCTAATTTTTCAATGTAACCGGTATAAATATATCGGTTTTATGTGAGAATAGGTCTATATAATA
65 AGGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTAAGAGAGAATAGGTCTACATAATG
* * * * *
863022 TATCGACACTTTTTAAGTTTGTGTCTATAATTTTTGTCCAGAATGAATGCCCAATCTAAGTGCAC
130 TATCGACACTTTTTAAGTTTGTGTCGATACTTTTCGTCCAGAATGAATGCCCAAACTAGGTGCAC
863087 GCATAAA
195 GCATAAA
* * * * *
863094 GTGTCGATACATTTACAAAAAATATCGATCGCAAAAA-ATCGAAAAACATATTTATAATGTAATA
1 GTGTCGATACATTTATAAAAAGTATCGATCGTAAAAACATCGAAACACATAATTATAATGTAATA
** * * * *
863158 TATAATTTTTCAATGTAATCGGTATAAATCTACCGGTTTTATGTGAGAATAGGTCTACATAATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTAAGAGAGAATAGGTCTACATAATGT
** * * *
863223 ATTAACACTTTTTAAGTTTGTGTTGATA-TTTTTGTCCAGAATGAATGCCCAATCTAGGTGCACG
131 ATCGACACTTTTTAAGTTTGTGTCGATACTTTTCGTCCAGAATGAATGCCCAAACTAGGTGCACG
863287 CATAAA
196 CATAAA
* * * *
863293 GTGTCGATACATTTATGAAAAGTATCGATCATAAAAACATCGAAACAGATATTTATAATGTAATA
1 GTGTCGATACATTTATAAAAAGTATCGATCGTAAAAACATCGAAACACATAATTATAATGTAATA
* * ** *
863358 GGTAATTTTTCAATGAAACCAGTATAAATATATTGGTTTTAAGAGAGAATAGGT-TATATAATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTAAGAGAGAATAGGTCTACATAATGT
* *
863422 ATCGACACTTTTAAAATTTGTGTCGATACTTTTCGT-CAGAATGAATGCCCAAACTAGGTGCACG
131 ATCGACACTTTTTAAGTTTGTGTCGATACTTTTCGTCCAGAATGAATGCCCAAACTAGGTGCACG
863486 CATAAA
196 CATAAA
* * * *
863492 GTGTCGATATATTTATGAAAAGTATCGATCGCAAAAACATCGAAACGCATAATTATAATGTAATA
1 GTGTCGATACATTTATAAAAAGTATCGATCGTAAAAACATCGAAACACATAATTATAATGTAATA
* *
863557 GGTAATTTTTCAATGTAACCGGTATAAATATACTGGTTTTAAGAGGGAATAGGTCTACATAATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTAAGAGAGAATAGGTCTACATAATGT
* *
863622 ATCGACACTTTTTAAGTTTGTGTCGATACTTTTCGTCCATAATGAATGCCCAAACTAGGTGCATG
131 ATCGACACTTTTTAAGTTTGTGTCGATACTTTTCGTCCAGAATGAATGCCCAAACTAGGTGCACG
863687 CATAAA
196 CATAAA
* *
863693 GTGTCGATATATTTATGAAAAGTATCGATCGTAAAAACATCGAAACACATAATTATAATGTAATA
1 GTGTCGATACATTTATAAAAAGTATCGATCGTAAAAACATCGAAACACATAATTATAATGTAATA
* * *
863758 GGTAACTTTTCAATGTAACAGGTATAAATATACCGGTTTTAAGAGAGAATAGGTTTACATAATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTAAGAGAGAATAGGTCTACATAATGT
* *
863823 ATCGACACTTTTTAAATTTGTGTCGATACTTTTCGTCCAGAATGAATGCCCAAACTAGGTGCACA
131 ATCGACACTTTTTAAGTTTGTGTCGATACTTTTCGTCCAGAATGAATGCCCAAACTAGGTGCACG
863888 CATAAA
196 CATAAA
* * * **
863894 GTGTCGATACATTTACAAAAAATATCAATCCCAAAAACATCGAAACACATAATTATAATGTAATA
1 GTGTCGATACATTTATAAAAAGTATCGATCGTAAAAACATCGAAACACATAATTATAATGTAATA
* ** * *
863959 GGTAATTTTTCAATCTAACCAATATAAATATTCCGGTTTTAAGAGAGAAGAGGTCTACATAATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTAAGAGAGAATAGGTCTACATAATGT
* *
864024 ATCGACACTTTTTAAGTTTGTGTCGATACTTTTCGTCCAGAATGAATGCCTAAAGTAGGTGCACG
131 ATCGACACTTTTTAAGTTTGTGTCGATACTTTTCGTCCAGAATGAATGCCCAAACTAGGTGCACG
*
864089 TATAAA
196 CATAAA
*
864095 GTGTCGATACATTTATAAAAAGTATCGATCGTAAAAATATCGAAACACATAATTATAATGTAATA
1 GTGTCGATACATTTATAAAAAGTATCGATCGTAAAAACATCGAAACACATAATTATAATGTAATA
* * *
864160 GGCAAATTTTCAATGTAACCGGTATAAATATACCGGTTTTAAGAGATAATAGGTCTACATAATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTAAGAGAGAATAGGTCTACATAATGT
* * * * *
864225 ATCAACACTTTTTAAGTTTGTGTCGATACTTTTCGTCCAGAATAAATGCCTAAAGTATGTGCACG
131 ATCGACACTTTTTAAGTTTGTGTCGATACTTTTCGTCCAGAATGAATGCCCAAACTAGGTGCACG
*
864290 TATAAA
196 CATAAA
* * * * * *
864296 ATGTCCATACATTTATAAAAAGTATCGATCGTAAAAATATGGAAACGCATAATTATAATTTAATA
1 GTGTCGATACATTTATAAAAAGTATCGATCGTAAAAACATCGAAACACATAATTATAATGTAATA
* * * *
864361 GGTAATTATTCAATGTAACCGATATAAATATATCGGTTTTAAGAGAGAATAGGTAT-CTATAATG
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTAAGAGAGAATAGGTCTAC-ATAATG
*
864425 TATCGACACTTTTTAAATTTGTGTCGATACTTTT
130 TATCGACACTTTTTAAGTTTGTGTCGATACTTTT
864459 TTAAATTTTG
Statistics
Matches: 1240, Mismatches: 120, Indels: 11
0.90 0.09 0.01
Matches are distributed among these distances:
199 247 0.20
200 224 0.18
201 754 0.61
202 15 0.01
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33
Consensus pattern (201 bp):
GTGTCGATACATTTATAAAAAGTATCGATCGTAAAAACATCGAAACACATAATTATAATGTAATA
GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTAAGAGAGAATAGGTCTACATAATGT
ATCGACACTTTTTAAGTTTGTGTCGATACTTTTCGTCCAGAATGAATGCCCAAACTAGGTGCACG
CATAAA
Found at i:865995 original size:18 final size:18
Alignment explanation
Indices: 865972--866011 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
865962 CAAGCGGTCA
* *
865972 ATGAAGATTACGATGAAG
1 ATGAAGATAAAGATGAAG
*
865990 ATGAAGATAAAGATGATG
1 ATGAAGATAAAGATGAAG
866008 ATGA
1 ATGA
866012 TGATCCAAAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.47, C:0.03, G:0.28, T:0.23
Consensus pattern (18 bp):
ATGAAGATAAAGATGAAG
Found at i:867120 original size:11 final size:11
Alignment explanation
Indices: 867104--867128 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
867094 TGTGGGTTTG
867104 ATTATTTGAAC
1 ATTATTTGAAC
867115 ATTATTTGAAC
1 ATTATTTGAAC
867126 ATT
1 ATT
867129 GTTATGTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.08, G:0.08, T:0.48
Consensus pattern (11 bp):
ATTATTTGAAC
Found at i:869188 original size:198 final size:199
Alignment explanation
Indices: 868735--869725 Score: 1290
Period size: 198 Copynumber: 5.0 Consensus size: 199
868725 TTGAGTAATC
** * *
868735 TCCAGAATGAATGTCC-AACCGAGGTGCACGAATAAAGTGTCGATATATTTATTACAAA-TATCG
1 TCCAGAATGAATG-CCTAAAAG-GGTGCACGAATAAAGTGTCGATACATTTA-TAAAAAGTATCG
* * * *
868798 ATCCCAAAAATATCGAATAAGATAATTATAATGTAATAGGTAAATTTACAATGTAATCGGTAGAT
63 ATCCCAAAAACATCGAATAAGATAATTATAATGTAATAGGTAAATTTCCAATGTAACCGGTAGAA
*
868863 ATATACTGGTTAATTAGAAAATAGGTCTACATAATATATCGACACTTTTTAAA-TTGTGTCGATA
128 ATATACTGGTTAATTAGAAAATAGGTCTACATAATGTATCGACACTTTTTAAATTTGTGTCGATA
868927 CTTTTTG
193 CTTTTTG
** * ** * *
868934 TTTAGAATAAATGACC-AACCGAGGTGCACGAATAAAGTGTCGATACATTAATAAAAAATATCGA
1 TCCAGAATGAATG-CCTAAAAG-GGTGCACGAATAAAGTGTCGATACATTTATAAAAAGTATCGA
* * * *
868998 TCCCAAAAATATAGAATAAGATAATTATAATGTAATAGGTCAATTTCCAATGTAATCGGTAGAAA
64 TCCCAAAAACATCGAATAAGATAATTATAATGTAATAGGTAAATTTCCAATGTAACCGGTAGAAA
* * * * *
869063 TATAATGGTT-ATTAGAAAATACGTCTACATAATATATCGACACTTTTTAAATTTGTGTTGATAA
129 TATACTGGTTAATTAGAAAATAGGTCTACATAATGTATCGACACTTTTTAAATTTGTGTCGATAC
869127 TTTTTG
194 TTTTTG
*
869133 TCCAGAATGAATGCCTAAAAGGGTGCACGAACAAAGTGTCGATACATTTATAAAAAGTATCGATC
1 TCCAGAATGAATGCCTAAAAGGGTGCACGAATAAAGTGTCGATACATTTATAAAAAGTATCGATC
* *
869198 CCAAAAACATCAAATAAGATAATTATAATGTAATAGGTCAATTTCCAATGTAACCGGTAGAAATA
66 CCAAAAACATCGAATAAGATAATTATAATGTAATAGGTAAATTTCCAATGTAACCGGTAGAAATA
* * *
869263 TACCGGTTAATTAAAAAATAGGTCTATATAATGTATCGACACTTTTTAAATTTGTGTCGATACTT
131 TACTGGTTAATTAGAAAATAGGTCTACATAATGTATCGACACTTTTTAAATTTGTGTCGATACTT
869328 TTTG
196 TTTG
* * * **
869332 TCCAGCATGAATGCTTAAAAGGGTGCACGCATAAAGTGTCGATACATTTA-AAATTGTATCGATC
1 TCCAGAATGAATGCCTAAAAGGGTGCACGAATAAAGTGTCGATACATTTATAAAAAGTATCGATC
* * * * *
869396 CCAAAAACATCGAA-ACTGATAATTATAATGTAATATGTAACTTTACAATGTAACTGGTAGAAAT
66 CCAAAAACATCGAATA-AGATAATTATAATGTAATAGGTAAATTTCCAATGTAACCGGTAGAAAT
* * * ** *
869460 ATAC-GGGTAATTAGAAAATAGGTCTACATCATGTATCGACACTTGTGGAATTTGTATCGATACT
130 ATACTGGTTAATTAGAAAATAGGTCTACATAATGTATCGACACTTTTTAAATTTGTGTCGATACT
*
869524 TTTTA
195 TTTTG
**
869529 TCCAGAATGAATGCCTAAAAGGGTGCAC-ATATAAAGTGTCGATACATTTA-AAATTGTATCGAT
1 TCCAGAATGAATGCCTAAAAGGGTGCACGA-ATAAAGTGTCGATACATTTATAAAAAGTATCGAT
* * * *
869592 CCCAAAAACATCGAA-ACCGATGAA-TATAATGTAATACGTAAATTTCCAATATAGCCGGTAGAA
65 CCCAAAAACATCGAATA-AGAT-AATTATAATGTAATAGGTAAATTTCCAATGTAACCGGTAGAA
*
869655 ATAT-TTCGGTTAATTAGAAAATAGGTCTACATAATGTATCGACACTTTTT-AATGTTGTGTCGA
128 ATATACT-GGTTAATTAGAAAATAGGTCTACATAATGTATCGACACTTTTTAAAT-TTGTGTCGA
869718 TACTTTTT
191 TACTTTTT
869726 TAAATTAAGC
Statistics
Matches: 709, Mismatches: 73, Indels: 21
0.88 0.09 0.03
Matches are distributed among these distances:
197 176 0.25
198 283 0.40
199 250 0.35
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (199 bp):
TCCAGAATGAATGCCTAAAAGGGTGCACGAATAAAGTGTCGATACATTTATAAAAAGTATCGATC
CCAAAAACATCGAATAAGATAATTATAATGTAATAGGTAAATTTCCAATGTAACCGGTAGAAATA
TACTGGTTAATTAGAAAATAGGTCTACATAATGTATCGACACTTTTTAAATTTGTGTCGATACTT
TTTG
Found at i:871380 original size:19 final size:19
Alignment explanation
Indices: 871356--871404 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
871346 ATGTAGGGGA
871356 AATTTTGTATGCAATTCAT
1 AATTTTGTATGCAATTCAT
* * *
871375 AATTTTGTATACGATTTAT
1 AATTTTGTATGCAATTCAT
871394 AATTTTGTATG
1 AATTTTGTATG
871405 TGAATGTAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.31, C:0.06, G:0.12, T:0.51
Consensus pattern (19 bp):
AATTTTGTATGCAATTCAT
Found at i:874351 original size:200 final size:199
Alignment explanation
Indices: 873877--874601 Score: 857
Period size: 201 Copynumber: 3.6 Consensus size: 199
873867 ACCTAAATAT
* *
873877 GTGTCGATACATTT-TCTAAAAGTATCGA-CCACAAAAACATCAAAACCAATAATTATAATGTAA
1 GTGTCGATACATTTAT-TAAAAGTATCGATCC-CAAAAACATCGAAACCGATAATTATAATGTAA
* * * * * * * *
873940 TATGTAAA-TTAACAATGTAACAGGTATAATTATACCGA-TTAATTAGAAAACATGTCAACATAA
64 TAGGTAAATTTAA-AATGTAACCGATATAAATATA-CGATTTTATGAGAAAATAGGTCAACATAA
* * * *
874003 TATATCGATACTTGTGAAATTTGTGTCGATACTTATTGTCCAAAATGAATGCCCAAA-AGGGATG
127 TGTATCGATACTTTTTAAATTTGTGTCGATACTT-TTGTCCAGAATGAATGCCCAAACAGGG-TG
874067 CACACATAAA
190 CACACATAAA
* * *
874077 GTGTCGATACATTTGTTAAAAGTATCGATCTCAAAAAACATCGAAACCGATAGTTATAATGTAAT
1 GTGTCGATACATTTATTAAAAGTATCGATC-CCAAAAACATCGAAACCGATAATTATAATGTAAT
*
874142 AGGTAAATTTAAAATGTAACCGATATAAATATATCGATTTTATGAGATAATAGGTCAACATAATG
65 AGGTAAATTTAAAATGTAACCGATATAAATATA-CGATTTTATGAGAAAATAGGTCAACATAATG
* *
874207 TATCGACACTTTTTAAATTTGTGTCGATACATTTTGACCAGAATGAATG-CCAAACAGGGTGCAC
129 TATCGATACTTTTTAAATTTGTGTCGATAC-TTTTGTCCAGAATGAATGCCCAAACAGGGTGCAC
*
874271 GCATAAA
193 ACATAAA
* *
874278 GTGTCGATACATTTATTAACAGTATCGATCCCAAAAACATCGAAACCGATAACTATAATGTAATA
1 GTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAATGTAATA
* * *
874343 GGTAAATTTACAATGT-ACCTGATAGAAATATACTG-TTTTATGAGAAAATAGGTCTACATAATG
66 GGTAAATTTAAAATGTAACC-GATATAAATATAC-GATTTTATGAGAAAATAGGTCAACATAATG
* * * * *
874406 TATTGATACTTTTTAAGTTTATGTCGATACTTTTTTCCAGAATGAATGTCC-AAC-GAGGTGCAC
129 TATCGATACTTTTTAAATTTGTGTCGATACTTTTGTCCAGAATGAATGCCCAAACAG-GGTGCAC
874469 ACATAAA
193 ACATAAA
* *
874476 GTGTCGATACATTTA--AAATTGTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAAT
1 GTGTCGATACATTTATTAAA-AGTATCGATCCCAAAAACATCGAAACCGATAATTATAATGTAAT
* * * * * *
874539 AGGTAAATTTACAATGTTACC-AGTATAAATACACCG-CTTTAGTTAGAAAATAGGTCAATATAA
65 AGGTAAATTTAAAATGTAACCGA-TATAAATATA-CGATTTTA-TGAGAAAATAGGTCAACATAA
874602 GCGCTACCTA
Statistics
Matches: 462, Mismatches: 47, Indels: 34
0.85 0.09 0.06
Matches are distributed among these distances:
196 3 0.01
197 72 0.16
198 69 0.15
199 58 0.13
200 85 0.18
201 102 0.22
202 71 0.15
203 2 0.00
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.31
Consensus pattern (199 bp):
GTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAATGTAATA
GGTAAATTTAAAATGTAACCGATATAAATATACGATTTTATGAGAAAATAGGTCAACATAATGTA
TCGATACTTTTTAAATTTGTGTCGATACTTTTGTCCAGAATGAATGCCCAAACAGGGTGCACACA
TAAA
Found at i:874730 original size:23 final size:23
Alignment explanation
Indices: 874680--874724 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
874670 TATCTATTTT
* **
874680 ATTATATAAGCGCTATCTTTTAC
1 ATTATATAAGCGCTACCTAATAC
874703 ATTATATAAGCGCTACCTAATA
1 ATTATATAAGCGCTACCTAATA
874725 TGTTATTGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.38
Consensus pattern (23 bp):
ATTATATAAGCGCTACCTAATAC
Found at i:874742 original size:87 final size:87
Alignment explanation
Indices: 874596--874849 Score: 386
Period size: 87 Copynumber: 2.9 Consensus size: 87
874586 AAATAGGTCA
* *
874596 ATATAAGCGCTACCTATTACATTATATAAACGCTACCTAATATGTTATTGTATTTGATAATATTT
1 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
* *
874661 CCGGTTAAATATC-TATTTTATT
66 CCGATTAAAT-GCATATTTTATT
* *
874683 ATATAAGCGCTATCTTTTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
1 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
874748 CCGATTAAATGCATATTTTATT
66 CCGATTAAATGCATATTTTATT
* * **
874770 ATATAAACGCTACCTATTATATTATATAAGTACTACCTAATATGTTATTGTACTTGATAATATTT
1 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
*
874835 CCGCTTAAATG-ATAT
66 CCGATTAAATGCATAT
874850 AACATAACTG
Statistics
Matches: 153, Mismatches: 13, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
86 5 0.03
87 148 0.97
ACGTcount: A:0.34, C:0.14, G:0.09, T:0.43
Consensus pattern (87 bp):
ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
CCGATTAAATGCATATTTTATT
Found at i:874805 original size:23 final size:23
Alignment explanation
Indices: 874761--874817 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 23
874751 ATTAAATGCA
* *
874761 TATTTTATTATATAAACGCTACC
1 TATTATATTATATAAACACTACC
**
874784 TATTATATTATATAAGTACTACC
1 TATTATATTATATAAACACTACC
* *
874807 TAATATGTTAT
1 TATTATATTAT
874818 TGTACTTGAT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.37, C:0.12, G:0.05, T:0.46
Consensus pattern (23 bp):
TATTATATTATATAAACACTACC
Found at i:876685 original size:18 final size:18
Alignment explanation
Indices: 876658--876702 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
876648 ACAAAATTAG
*
876658 ATATTATTTTA-AATAATT
1 ATATTTTTTTACAATAA-T
876676 ATATTTTTTTACAATAAT
1 ATATTTTTTTACAATAAT
876694 ATCATTTTT
1 AT-ATTTTT
876703 CACCACATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 13 0.54
19 11 0.46
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (18 bp):
ATATTTTTTTACAATAAT
Found at i:878126 original size:41 final size:40
Alignment explanation
Indices: 877997--878204 Score: 198
Period size: 38 Copynumber: 5.2 Consensus size: 40
877987 CATTTTGAAA
* *
877997 ATATATAATATATAGTTTTT-AAACA-TTTGAAAACATTT
1 ATATATAATATATAGTTTTTAAAACATTTTGAAAATATAT
* * * *
878035 ATATATTATATA-ATTTGTTTAAAACGTTTTTACAAA-A-A-
1 ATATATAATATATAGTT-TTTAAAACATTTTGA-AAATATAT
* *
878073 AAATATAATATATAGTTTTCAAAACATTTTTGAAAATATAT
1 ATATATAATATATAGTTTTTAAAACA-TTTTGAAAATATAT
* *
878114 ATATATATTATATAGTTTTTTAAACATTTTGAAAATA-A-
1 ATATATAATATATAGTTTTTAAAACATTTTGAAAATATAT
*
878152 ATATATAATATATAATTTTTTGAAAAACATTTTGAAAATATAT
1 ATATATAATATAT-AGTTTTT--AAAACATTTTGAAAATATAT
878195 AATATATAAT
1 -ATATATAAT
878205 TTTTAAAATG
Statistics
Matches: 137, Mismatches: 18, Indels: 24
0.77 0.10 0.13
Matches are distributed among these distances:
37 3 0.02
38 46 0.34
39 20 0.15
40 17 0.12
41 41 0.30
42 1 0.01
44 9 0.07
ACGTcount: A:0.47, C:0.04, G:0.05, T:0.44
Consensus pattern (40 bp):
ATATATAATATATAGTTTTTAAAACATTTTGAAAATATAT
Found at i:878160 original size:79 final size:79
Alignment explanation
Indices: 877994--878202 Score: 241
Period size: 81 Copynumber: 2.6 Consensus size: 79
877984 AAACATTTTG
* *
877994 AAAATATATAATATATAGTTTTTAAACA-TTTGAAAACAT-T-TATATATTATATAATTTGTTTA
1 AAAATATATAATATATAGTTTTAAAACATTTTGAAAATATATATATATATTATATAATTTGTTTA
* *
878056 AAACGTTTTTACAA
66 AAACATTTTGACAA
* *
878070 AAAAAATATAATATATAGTTTTCAAAACATTTTTGAAAATATATATATATATTATATAGTTT-TT
1 AAAATATATAATATATAGTTTT-AAAACA-TTTTGAAAATATATATATATATTATATAATTTGTT
878134 T-AAACATTTTGA-AA
64 TAAAACATTTTGACAA
*
878148 ATAAATATATAATATATAATTTTTTGAAAAACATTTTGAAAATATATAATATATA
1 A-AAATATATAATATAT-A-GTTTT--AAAACATTTTGAAAATATAT-ATATATA
878203 ATTTTTAAAA
Statistics
Matches: 114, Mismatches: 9, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
76 21 0.18
77 5 0.04
78 3 0.03
79 33 0.29
80 5 0.04
81 34 0.30
82 13 0.11
ACGTcount: A:0.48, C:0.04, G:0.05, T:0.44
Consensus pattern (79 bp):
AAAATATATAATATATAGTTTTAAAACATTTTGAAAATATATATATATATTATATAATTTGTTTA
AAACATTTTGACAA
Found at i:878225 original size:35 final size:37
Alignment explanation
Indices: 877983--878208 Score: 125
Period size: 37 Copynumber: 5.9 Consensus size: 37
877973 TATATTTTCG
*
877983 AAAACATTTTGAAAATATATAATATAT-AGTTTTT--
1 AAAACATTTTGAAAATATATAATATATAATTTTTTGA
*
878017 -AAACA-TTTGAAAACATTTATATATTATATAATTTGTTT--
1 AAAACATTTTG-AAA-A--TATATAATATATAATTT-TTTGA
* * * * *
878055 AAAACGTTTTTACAAA-A-AAAATATAATATATAGTTTT-C
1 AAAACATTTTGA-AAATATATAATAT-ATA-AT-TTTTTGA
878093 AAAACATTTTTGAAAATATATATATATATTATATAGTTTTT--
1 AAAACA-TTTTGAAAATATATA-ATATA-TA-AT--TTTTTGA
*
878134 TAAACATTTTGAAAATAAATATATAATATATAATTTTTTGA
1 AAAACATTTTG---A-AAATATATAATATATAATTTTTTGA
878175 AAAACATTTTGAAAATATATAATATATAATTTTT
1 AAAACATTTTGAAAATATATAATATATAATTTTT
878209 AAAATGTTTT
Statistics
Matches: 153, Mismatches: 14, Indels: 47
0.71 0.07 0.22
Matches are distributed among these distances:
32 4 0.03
33 8 0.05
34 1 0.01
35 5 0.03
36 15 0.10
37 30 0.20
38 13 0.08
39 17 0.11
40 13 0.08
41 26 0.17
42 6 0.04
43 6 0.04
44 9 0.06
ACGTcount: A:0.47, C:0.04, G:0.05, T:0.44
Consensus pattern (37 bp):
AAAACATTTTGAAAATATATAATATATAATTTTTTGA
Found at i:878230 original size:117 final size:115
Alignment explanation
Indices: 877997--878230 Score: 278
Period size: 116 Copynumber: 2.0 Consensus size: 115
877987 CATTTTGAAA
** * *
877997 ATATATAATATATAGTTTTTAAACATTTGAAAACATTTATATATTATATAATTTGTTTAAAACGT
1 ATATATAATATATAGTTTTTAAACATTTGAAAACAAATATATAATATATAATTTGTTTAAAACGA
*
878062 TTTTACAAAAAAAATATAATATATAGTTTTCAAAACATTTTTGAAAATATAT
66 TTTT--AAAAAAAATATAATATATAATTTTCAAAACATTTTTGAAAATATAT
* *
878114 ATATATATTATATAGTTTTTTAAACATTTTGAAAATAAATATATAATATATAATTT-TTTGAAAA
1 ATATATAATATATAG-TTTTTAAACA-TTTGAAAACAAATATATAATATATAATTTGTTT--AAA
* * * **
878178 AC-ATTTT-GAAAATATATAATATATAATTTTTAAAATGTTTTTGAAAAT-TAT
62 ACGATTTTAAAAAAAATATAATATATAATTTTCAAAACATTTTTGAAAATATAT
878229 AT
1 AT
878231 GGTTTAAAAA
Statistics
Matches: 101, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
115 5 0.05
116 35 0.35
117 14 0.14
118 13 0.13
119 29 0.29
120 5 0.05
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.45
Consensus pattern (115 bp):
ATATATAATATATAGTTTTTAAACATTTGAAAACAAATATATAATATATAATTTGTTTAAAACGA
TTTTAAAAAAAATATAATATATAATTTTCAAAACATTTTTGAAAATATAT
Found at i:878290 original size:31 final size:30
Alignment explanation
Indices: 878160--878293 Score: 117
Period size: 30 Copynumber: 4.2 Consensus size: 30
878150 AAATATATAA
*
878160 TATATAATTTTTTGAAAAACA-TTTTGAAAAT
1 TATAT-ATTTTTT-AAAAATATTTTTGAAAAT
* *
878191 ATATAATATATAATTTTTAAAATGTTTTTGAAAAT
1 -TAT-ATAT-T--TTTTAAAAATATTTTTGAAAAT
** **
878226 TATATGGTTTAAAAAAATATTTTTGAAAAT
1 TATATATTTTTTAAAAATATTTTTGAAAAT
*
878256 TATATATTTTTTAAAAATATTTTTGGAAATT
1 TATATATTTTTTAAAAATATTTTT-GAAAAT
878287 TATATAT
1 TATATAT
878294 AATATATAGT
Statistics
Matches: 82, Mismatches: 14, Indels: 13
0.75 0.13 0.12
Matches are distributed among these distances:
30 38 0.46
31 12 0.15
32 6 0.07
33 5 0.06
34 7 0.09
35 14 0.17
ACGTcount: A:0.44, C:0.01, G:0.07, T:0.49
Consensus pattern (30 bp):
TATATATTTTTTAAAAATATTTTTGAAAAT
Found at i:878357 original size:3 final size:3
Alignment explanation
Indices: 878349--878398 Score: 50
Period size: 3 Copynumber: 16.7 Consensus size: 3
878339 GTTTTTATAT
* *
878349 TTA TTA TTA TTA TTA TTTA TTA TCA CTA TTA TT- TTA TTA CTTA TT-
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA
878394 TTA TT
1 TTA TT
878399 TTAATTTTTC
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
2 4 0.10
3 29 0.74
4 6 0.15
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:878365 original size:16 final size:16
Alignment explanation
Indices: 878346--878399 Score: 65
Period size: 16 Copynumber: 3.3 Consensus size: 16
878336 ATAGTTTTTA
878346 TATTTATTATTATTAT
1 TATTTATTATTATTAT
* *
878362 TATTTATTATCACTAT
1 TATTTATTATTATTAT
878378 TATTTTATTACTTATT-T
1 TA-TTTATTA-TTATTAT
878395 TATTT
1 TATTT
878400 TAATTTTTCC
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
16 19 0.59
17 10 0.31
18 3 0.09
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.67
Consensus pattern (16 bp):
TATTTATTATTATTAT
Found at i:878883 original size:15 final size:15
Alignment explanation
Indices: 878863--878900 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
878853 AAACACGAGA
878863 AAGAACCAC-AAACGC
1 AAGAACCACAAAAC-C
*
878878 AAGAACAACAAAACC
1 AAGAACCACAAAACC
878893 AAGAACCA
1 AAGAACCA
878901 TTTTTTGGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 16 0.80
16 4 0.20
ACGTcount: A:0.61, C:0.29, G:0.11, T:0.00
Consensus pattern (15 bp):
AAGAACCACAAAACC
Found at i:879676 original size:25 final size:27
Alignment explanation
Indices: 879640--879693 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 27
879630 TAAGGTTCAA
879640 TTTTGTTATTATGTATA-TATTTT-ATT
1 TTTTGTTATTAT-TATACTATTTTCATT
*
879666 TTTTGTT-TTATTTTACTATTTTCATT
1 TTTTGTTATTATTATACTATTTTCATT
879692 TT
1 TT
879694 GGCTTTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 3 0.12
25 10 0.40
26 12 0.48
ACGTcount: A:0.19, C:0.04, G:0.06, T:0.72
Consensus pattern (27 bp):
TTTTGTTATTATTATACTATTTTCATT
Found at i:879926 original size:36 final size:36
Alignment explanation
Indices: 879881--879973 Score: 98
Period size: 36 Copynumber: 2.6 Consensus size: 36
879871 TTTTTTATTA
879881 TTTTTTATTTTTGTTTATTTTATCA-TTCTATTTAT
1 TTTTTTATTTTTGTTTATTTTATCATTTCTATTTAT
*** * * *
879916 TTTGTTTATTTCCCTTTACTTTATCATTTGTTTTTAT
1 TTT-TTTATTTTTGTTTATTTTATCATTTCTATTTAT
*
879953 TTTTTTATATGTTGTTTATTT
1 TTTTTTAT-TTTTGTTTATTT
879974 ATTTCGTATT
Statistics
Matches: 44, Mismatches: 11, Indels: 4
0.75 0.19 0.07
Matches are distributed among these distances:
35 3 0.07
36 23 0.52
37 18 0.41
ACGTcount: A:0.15, C:0.08, G:0.05, T:0.72
Consensus pattern (36 bp):
TTTTTTATTTTTGTTTATTTTATCATTTCTATTTAT
Found at i:882688 original size:8 final size:8
Alignment explanation
Indices: 882675--882715 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
882665 TCACAATCTT
882675 TCAAATTC
1 TCAAATTC
882683 TCAAATTC
1 TCAAATTC
* *
882691 CCAAACTC
1 TCAAATTC
882699 T-AAATTC
1 TCAAATTC
882706 TCAAATTC
1 TCAAATTC
882714 TC
1 TC
882716 TGAAAATGAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
7 6 0.21
8 22 0.79
ACGTcount: A:0.37, C:0.29, G:0.00, T:0.34
Consensus pattern (8 bp):
TCAAATTC
Found at i:888021 original size:5 final size:5
Alignment explanation
Indices: 888011--888045 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
888001 TTTCTATTTT
*
888011 TATTA TATTA TATTA TAATA TA-TA TATTA TATTA T
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA T
888046 TCCTTAATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
4 4 0.14
5 24 0.86
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (5 bp):
TATTA
Found at i:888469 original size:13 final size:13
Alignment explanation
Indices: 888438--888475 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
888428 ATTTACAAAC
*
888438 ATTTTTTTTACTTT
1 ATTTTATTTA-TTT
888452 A-TTTATTTATTT
1 ATTTTATTTATTT
888464 ATTTTATTTATT
1 ATTTTATTTATT
888476 CGTTTGTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
12 4 0.18
13 17 0.77
14 1 0.05
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (13 bp):
ATTTTATTTATTT
Found at i:888469 original size:17 final size:17
Alignment explanation
Indices: 888444--888498 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
888434 AAACATTTTT
* *
888444 TTTACTTTATTTATTTA
1 TTTATTTTATTTATTAA
**
888461 TTTATTTTATTTATTCG
1 TTTATTTTATTTATTAA
*
888478 TTTGTTTTATCTTATTAA
1 TTTATTTTAT-TTATTAA
888496 TTT
1 TTT
888499 CTTATTGTCT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
17 23 0.74
18 8 0.26
ACGTcount: A:0.20, C:0.05, G:0.04, T:0.71
Consensus pattern (17 bp):
TTTATTTTATTTATTAA
Found at i:892282 original size:16 final size:15
Alignment explanation
Indices: 892261--892290 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
892251 AAGATAGAAG
892261 AGAAGATCAAGATGAT
1 AGAAGATCAA-ATGAT
892277 AGAAGATCAAATGA
1 AGAAGATCAAATGA
892291 AGATGGTCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.53, C:0.07, G:0.23, T:0.17
Consensus pattern (15 bp):
AGAAGATCAAATGAT
Found at i:893038 original size:6 final size:6
Alignment explanation
Indices: 893027--893061 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
893017 GGAACCAAGG
893027 AGGGAA AGGGAA AGGGAA AGGGAA AGGGAA AGGGA
1 AGGGAA AGGGAA AGGGAA AGGGAA AGGGAA AGGGA
893062 GCAGTTCGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (6 bp):
AGGGAA
Found at i:898851 original size:9 final size:9
Alignment explanation
Indices: 898837--898880 Score: 54
Period size: 9 Copynumber: 5.0 Consensus size: 9
898827 CGTCCTAGAT
898837 AGAAAAAAG
1 AGAAAAAAG
*
898846 AGAAAAAAA
1 AGAAAAAAG
*
898855 AGAAAAAAA
1 AGAAAAAAG
898864 AG-AAAAAG
1 AGAAAAAAG
*
898872 AGCAAAAAG
1 AGAAAAAAG
898881 GTGGGTTCAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
8 7 0.22
9 25 0.78
ACGTcount: A:0.80, C:0.02, G:0.18, T:0.00
Consensus pattern (9 bp):
AGAAAAAAG
Found at i:899959 original size:105 final size:105
Alignment explanation
Indices: 899685--900415 Score: 1001
Period size: 105 Copynumber: 7.0 Consensus size: 105
899675 ATATCGCGCC
* * *
899685 ACTCAAGACAACACAAGTTCAACTTCACGACGTAGGGACCGCTGGTTGTCAACAACAACTTCCCA
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAACTTCCCA
**
899750 ATTTTGGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 ATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* *
899790 ACTCCAGAC-AC-AAAGTTCAACTTCACGACGAAGGGACCACTGGTTGTCAACAACAACTTCCCA
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAACTTCCCA
* * * * *
899853 ATTTCAGAGCCAATTTCGACTTCACGGTGAAGGATTTTGA
66 ATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
*
899893 ATTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAACTTCCCA
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAACTTCCCA
* * *
899958 ATTTCGGAGCCAATTTCAACTTCACATCGAAGAATATTGG
66 ATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * *
899998 ACTCCAGACAATGCAAGTTCAACTTCATGACGAATGGACTGCTGGTTGTCAACAACAACTTCCCA
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAACTTCCCA
*
900063 ATTTCAGAGCCAATTTCAACTTCACAGCGAAGGAAATTGG
66 ATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
*
900103 ACTCCAGACAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGTCAACAACAACTTCCCA
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAACTTCCCA
*
900168 ATTTCAGAGCCAATTTCAACTTCCCAGCGAAGGATATTGG
66 ATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * * *
900208 ACTCCAGACAATGCAAGTTCAAGTTCACGACGAAGGGACCGATGGTTGTCAAC-A-AAGTT-TC-
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAACTTCCCA
* *
900269 A-TTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTAG
66 ATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * * * * * ** *
900308 ACTCGAGACAGCACTAGCTCAACTTCAC-AGCGAAGGGGCGGCTGACTGTCAACAAACAATTTCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGA-CGAAGGGACCGCTGGTTGTCAAC-AACAACTTCC
* * *
900372 CAATTCCAGAACCAATTTCAACTTCACAGCGGAGGATATTGG
64 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
900414 AC
1 AC
900416 GCGGAATAAT
Statistics
Matches: 551, Mismatches: 66, Indels: 17
0.87 0.10 0.03
Matches are distributed among these distances:
99 1 0.00
100 74 0.13
101 1 0.00
102 2 0.00
103 98 0.18
104 6 0.01
105 334 0.61
106 35 0.06
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.23
Consensus pattern (105 bp):
ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAACTTCCCA
ATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
Found at i:900913 original size:13 final size:13
Alignment explanation
Indices: 900895--900929 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
900885 CCACATGACC
900895 CAACACACTCCAG
1 CAACACACTCCAG
900908 CAACACACTCCAG
1 CAACACACTCCAG
*
900921 CAACCCACT
1 CAACACACT
900930 GTGCGAAACC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.37, C:0.49, G:0.06, T:0.09
Consensus pattern (13 bp):
CAACACACTCCAG
Found at i:901918 original size:5 final size:5
Alignment explanation
Indices: 901908--901942 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
901898 TTTCTATTTT
*
901908 TATTA TATTA TATTA TAATA TA-TA TATTA TATTA T
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA T
901943 TCCTTAATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
4 4 0.14
5 24 0.86
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (5 bp):
TATTA
Found at i:905302 original size:90 final size:90
Alignment explanation
Indices: 905203--905393 Score: 292
Period size: 90 Copynumber: 2.1 Consensus size: 90
905193 TATCTATTTT
* * *
905203 TTTGAATTAATATAATGGATATTTGTTGACGTTATATTTTAATGAATGTGATTAATATCAATAGT
1 TTTGAATTAATATAATAGATATTTGTTGACGCTATATTTTAATGAATATGATTAATATCAATAGT
* * *
905268 TGAATTACTATGATTAATATCAATA
66 TGAATGAATATGAATAATATCAATA
* *
905293 TTTGAATTAATATGATAGATATTTGTTGATGCTATATTTTAATGAATATGATTAATATCAATAGT
1 TTTGAATTAATATAATAGATATTTGTTGACGCTATATTTTAATGAATATGATTAATATCAATAGT
*
905358 TGAATGAATGTGAATAATATCAATA
66 TGAATGAATATGAATAATATCAATA
*
905383 GTTGAATTAAT
1 TTTGAATTAAT
905394 GTGATTAATA
Statistics
Matches: 91, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
90 91 1.00
ACGTcount: A:0.39, C:0.04, G:0.14, T:0.43
Consensus pattern (90 bp):
TTTGAATTAATATAATAGATATTTGTTGACGCTATATTTTAATGAATATGATTAATATCAATAGT
TGAATGAATATGAATAATATCAATA
Found at i:905314 original size:27 final size:27
Alignment explanation
Indices: 905251--905308 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
905241 TTAATGAATG
*
905251 TGATTAATATCAATAGTTGAATTACTA
1 TGATTAATATCAATAGTTGAATTAATA
*
905278 TGATTAATATCAATATTTGAATTAATA
1 TGATTAATATCAATAGTTGAATTAATA
905305 TGAT
1 TGAT
905309 AGATATTTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.41, C:0.05, G:0.10, T:0.43
Consensus pattern (27 bp):
TGATTAATATCAATAGTTGAATTAATA
Found at i:905363 original size:27 final size:27
Alignment explanation
Indices: 905333--905425 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
905323 GCTATATTTT
905333 AATGAATATGATTAATATCAATAGTTG
1 AATGAATATGATTAATATCAATAGTTG
* *
905360 AATGAATGTGAATAATATCAATAGTTG
1 AATGAATATGATTAATATCAATAGTTG
* * *
905387 AATTAATGTGATTAATATCAATATTTG
1 AATGAATATGATTAATATCAATAGTTG
* *
905414 AATTAACATGAT
1 AATGAATATGAT
905426 GGATATTTGT
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 59 1.00
ACGTcount: A:0.44, C:0.04, G:0.14, T:0.38
Consensus pattern (27 bp):
AATGAATATGATTAATATCAATAGTTG
Found at i:905376 original size:117 final size:117
Alignment explanation
Indices: 905243--905515 Score: 429
Period size: 117 Copynumber: 2.3 Consensus size: 117
905233 GTTATATTTT
* *
905243 AATGAATGTGATTAATATCAATAGTTGAATTACTATGATTAATATCAATATTTGAATTAATATGA
1 AATGAATGTGATTAATATCAATAGTTGAATTAATATGATTAATATCAATATTTGAATTAACATGA
* *
905308 TAGATATTTGTTGATGCTATATTTTAATGAATATGATTAATATCAATAGTTG
66 TAGATATTTGTTAATGCTATATTTTAATGAATATGATTAATATCAATAATTG
* *
905360 AATGAATGTGAATAATATCAATAGTTGAATTAATGTGATTAATATCAATATTTGAATTAACATGA
1 AATGAATGTGATTAATATCAATAGTTGAATTAATATGATTAATATCAATATTTGAATTAACATGA
* * *
905425 TGGATATTTGTTAATGCTATATTTTAATGAATGTTATTAATATCAATAATTG
66 TAGATATTTGTTAATGCTATATTTTAATGAATATGATTAATATCAATAATTG
* * * *
905477 AATTAATGTGATTAATATCAATATTTGAATGAATGTGAT
1 AATGAATGTGATTAATATCAATAGTTGAATTAATATGAT
905516 GGATATTAAT
Statistics
Matches: 143, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
117 143 1.00
ACGTcount: A:0.40, C:0.04, G:0.14, T:0.42
Consensus pattern (117 bp):
AATGAATGTGATTAATATCAATAGTTGAATTAATATGATTAATATCAATATTTGAATTAACATGA
TAGATATTTGTTAATGCTATATTTTAATGAATATGATTAATATCAATAATTG
Found at i:905521 original size:27 final size:27
Alignment explanation
Indices: 905443--905515 Score: 110
Period size: 27 Copynumber: 2.7 Consensus size: 27
905433 TGTTAATGCT
* *
905443 ATATTTTAATGAATGTTATTAATATCA
1 ATATTTGAATGAATGTGATTAATATCA
* *
905470 ATAATTGAATTAATGTGATTAATATCA
1 ATATTTGAATGAATGTGATTAATATCA
905497 ATATTTGAATGAATGTGAT
1 ATATTTGAATGAATGTGAT
905516 GGATATTAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.41, C:0.03, G:0.12, T:0.44
Consensus pattern (27 bp):
ATATTTGAATGAATGTGATTAATATCA
Found at i:907786 original size:108 final size:107
Alignment explanation
Indices: 907665--908357 Score: 514
Period size: 101 Copynumber: 6.5 Consensus size: 107
907655 AATAAAAATT
* *
907665 TATGTTAAATCAAAATAAATAGTATAATTAATTTATATTTACAATAAAAATAAAAAACAAAATAA
1 TATGTAAAATCAAAATAAATAGTATAA-TAATTTATATTTACAATAAAAATAAAAAATAAAATAA
907730 AAAATTTAAACTAAACTTACCAAACTACTCAAATACGATTTAA
65 AAAATTTAAACTAAACTTACCAAACTACTCAAATACGATTTAA
* * *
907773 TATGTAAAATCAAAATATATAGT-TCAATAATTTATA-TTAC--T--CAATAAAAAATAAAA-AT
1 TATGTAAAATCAAAATAAATAGTAT-AATAATTTATATTTACAATAAAAATAAAAAATAAAATAA
* * *
907831 ATAATTTAAACTAAACTTACCAAACTACTCTAATACGACTTAA
65 AAAATTTAAACTAAACTTACCAAACTACTCAAATACGATTTAA
* * *
907874 TATGTAAAATCAAAATAAATAGTCTAATAA-TTATATTTTA-AATTTAAAACAAAACTTAGACTA
1 TATGTAAAATCAAAATAAATAGTATAATAATTTATA-TTTACAA-TAAAAATAAAA---A-A-TA
* * * * *
907937 AAATTATATGAAAACTTTAAAATTAACTTACCAAACCACTCGAATACAATTTAA
59 AAA-TA-A--AAAA-TTTAAACTAAACTTACCAAACTACTCAAATACGATTTAA
* *** * *
907991 TCTGTAAAATCAAAA-AAATAG-ACTAATTAATTTAGT-TTTACAATAAAAACCCAAAATAAGAC
1 TATGTAAAATCAAAATAAATAGTA-TAA-TAATTTA-TATTTACAATAAAAATAAAAAATAAAAT
* * **
908053 AATAAATTTTAAACTAAACTTACTAAGGTACTCAAATACGATTTAA
63 AA-AAAATTTAAACTAAACTTACCAAACTACTCAAATACGATTTAA
* * * * * **
908099 TATGTAAAATAAAAATAATTAGTCTGATAATTTATA-TTAC--T--CAATAAAAAATAATGT-AA
1 TATGTAAAATCAAAATAAATAGTATAATAATTTATATTTACAATAAAAATAAAAAATAAAATAAA
* * ** * *
908158 TAATTTAAACTACACTTACCAAGTTTTACTCAAATACTACTTAA
66 AAATTTAAACTAAACTTACCAA--ACTACTCAAATACGATTTAA
* * * * * *
908202 TATGTAAAATTAAAATAAATAGTATAATAA-TTATAATTTA-AGTTAAAAA-CAAAAATTACA-C
1 TATGTAAAATCAAAATAAATAGTATAATAATTTAT-ATTTACA-ATAAAAATAAAAAATAAAATA
* * * * * *
908263 GAAAATTTAAATTAAACTTACCAAGCCACTCAAATACAATTTCA
64 AAAAATTTAAACTAAACTTACCAAACTACTCAAATACGATTTAA
* * * *
908307 TTTGTAAATTCAAAATAAATAATATATTTAATTTATATTT-CAAATAAAAAT
1 TATGTAAAATCAAAATAAATAGTATA-ATAATTTATATTTAC-AATAAAAAT
908358 TAAATAAGAA
Statistics
Matches: 461, Mismatches: 81, Indels: 87
0.73 0.13 0.14
Matches are distributed among these distances:
100 5 0.01
101 87 0.19
102 22 0.05
103 52 0.11
104 5 0.01
105 37 0.08
106 24 0.05
107 47 0.10
108 76 0.16
109 11 0.02
110 2 0.00
111 6 0.01
112 4 0.01
113 2 0.00
114 1 0.00
116 12 0.03
117 62 0.13
118 5 0.01
119 1 0.00
ACGTcount: A:0.52, C:0.11, G:0.04, T:0.33
Consensus pattern (107 bp):
TATGTAAAATCAAAATAAATAGTATAATAATTTATATTTACAATAAAAATAAAAAATAAAATAAA
AAATTTAAACTAAACTTACCAAACTACTCAAATACGATTTAA
Found at i:911716 original size:17 final size:18
Alignment explanation
Indices: 911684--911719 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
911674 GCAAGCTACA
*
911684 TCATTCAAAGCATGTAGT
1 TCATTCAAAACATGTAGT
911702 TCATT-AAAACATGTAGT
1 TCATTCAAAACATGTAGT
911719 T
1 T
911720 TATTTAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (18 bp):
TCATTCAAAACATGTAGT
Found at i:911787 original size:17 final size:17
Alignment explanation
Indices: 911755--911823 Score: 93
Period size: 17 Copynumber: 3.9 Consensus size: 17
911745 GTATGTTGGA
*
911755 TCATTCAATAAAACTAGT
1 TCATT-AATTAAACTAGT
*
911773 CCATTAATTAAACTAGT
1 TCATTAATTAAACTAGT
*
911790 TCATTCATTTAAACTAGT
1 TCATT-AATTAAACTAGT
911808 TCATTAATTAAACTAG
1 TCATTAATTAAACTAG
911824 ATCCTTTAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
17 25 0.56
18 20 0.44
ACGTcount: A:0.41, C:0.16, G:0.06, T:0.38
Consensus pattern (17 bp):
TCATTAATTAAACTAGT
Found at i:911794 original size:35 final size:35
Alignment explanation
Indices: 911755--911823 Score: 111
Period size: 35 Copynumber: 2.0 Consensus size: 35
911745 GTATGTTGGA
911755 TCATTCAATAAAACTAGTCCATTAATTAAACTAGT
1 TCATTCAATAAAACTAGTCCATTAATTAAACTAGT
* * *
911790 TCATTCATTTAAACTAGTTCATTAATTAAACTAG
1 TCATTCAATAAAACTAGTCCATTAATTAAACTAG
911824 ATCCTTTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.41, C:0.16, G:0.06, T:0.38
Consensus pattern (35 bp):
TCATTCAATAAAACTAGTCCATTAATTAAACTAGT
Found at i:914774 original size:60 final size:59
Alignment explanation
Indices: 914663--914775 Score: 131
Period size: 60 Copynumber: 1.9 Consensus size: 59
914653 CCAAACTATT
* *
914663 CTCATTCTAAATTAGCCCCAAACTTTTGAATATTCTAATTCTATCCTTAAATTATGAAC
1 CTCATTCTAAATTAGCCACAAACTTTTGAATATTCTAATTCTATCCCTAAATTATGAAC
* * * *
914722 CTCATTCTAAATTGGTCCATAAAGTTTTGAAT-TTTTCAA-TCTCATCCCTAAATT
1 CTCATTCTAAATTAG-CCACAAACTTTTGAATATTCT-AATTCT-ATCCCTAAATT
914776 CATTCTAATA
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
59 20 0.44
60 25 0.56
ACGTcount: A:0.32, C:0.21, G:0.06, T:0.41
Consensus pattern (59 bp):
CTCATTCTAAATTAGCCACAAACTTTTGAATATTCTAATTCTATCCCTAAATTATGAAC
Found at i:915003 original size:61 final size:59
Alignment explanation
Indices: 914892--915110 Score: 171
Period size: 59 Copynumber: 3.7 Consensus size: 59
914882 TATATAAGTA
* * ** * *
914892 TAGTTTAGGATGAAATTGGAATGTTCAAATAGTTTGGGGACTAACA-TAGAATGAAAATTG
1 TAGTTTGGGATAAAATTAAAATGTTCAAA-AGTTTAGGGACCAA-ATTAGAATGAAAATTG
* *
914952 TAGTTTGGGGGATAAAATTAAAATGTTCAAAAGTTTAGGGACCAATTTAGAAT-AATATTTG
1 TAGTTT--GGGATAAAATTAAAATGTTCAAAAGTTTAGGGACCAAATTAGAATGAA-AATTG
* * * * * **
915013 TAGTTTGGGATGAAATTGAAATGTTCAAAAGATT-GAGGA-CAAATTAGAAGGAAAGTCA
1 TAGTTTGGGATAAAATTAAAATGTTCAAAAGTTTAG-GGACCAAATTAGAATGAAAATTG
*
915071 TAGTTTAGGGATGAAAATAAAACAT-TT-AAAAGTTTAGGGA
1 TAGTTT-GGGAT-AAAATTAAA-ATGTTCAAAAGTTTAGGGA
915111 TTAATTTAAA
Statistics
Matches: 129, Mismatches: 20, Indels: 21
0.76 0.12 0.12
Matches are distributed among these distances:
58 18 0.14
59 45 0.35
60 17 0.13
61 30 0.23
62 19 0.15
ACGTcount: A:0.41, C:0.05, G:0.24, T:0.31
Consensus pattern (59 bp):
TAGTTTGGGATAAAATTAAAATGTTCAAAAGTTTAGGGACCAAATTAGAATGAAAATTG
Found at i:915118 original size:118 final size:121
Alignment explanation
Indices: 914892--915110 Score: 279
Period size: 119 Copynumber: 1.8 Consensus size: 121
914882 TATATAAGTA
* * * * **
914892 TAGTTTAGGATGAAATTGGAATGTTCAAATAGTTTGGGGACTAACATAGAATGAAAATTGTAGTT
1 TAGTTTAGGATGAAATTGAAATGTTCAAATAGATTGAGGACTAACATAGAAGGAAAATCATAGTT
* *
914957 TGGGGGATAAAATTAAAATGTTCAAAAGTTTAGGGACCAATTTAGAATAATATTTG
66 TGAGGGATAAAATAAAAATGTTCAAAAGTTTAGGGACCAATTTAGAATAATATTTG
* *
915013 TAGTTTGGGATGAAATTGAAATGTTCAAA-AGATTGAGGAC-AA-ATTAGAAGGAAAGTCATAGT
1 TAGTTTAGGATGAAATTGAAATGTTCAAATAGATTGAGGACTAACA-TAGAAGGAAAATCATAGT
915075 TT-AGGGATGAAAATAAAACAT-TT-AAAAGTTTAGGGA
65 TTGAGGGAT-AAAATAAAA-ATGTTCAAAAGTTTAGGGA
915111 TTAATTTAAA
Statistics
Matches: 85, Mismatches: 10, Indels: 9
0.82 0.10 0.09
Matches are distributed among these distances:
118 19 0.22
119 28 0.33
120 11 0.13
121 27 0.32
ACGTcount: A:0.41, C:0.05, G:0.24, T:0.31
Consensus pattern (121 bp):
TAGTTTAGGATGAAATTGAAATGTTCAAATAGATTGAGGACTAACATAGAAGGAAAATCATAGTT
TGAGGGATAAAATAAAAATGTTCAAAAGTTTAGGGACCAATTTAGAATAATATTTG
Found at i:921504 original size:18 final size:20
Alignment explanation
Indices: 921481--921531 Score: 70
Period size: 21 Copynumber: 2.6 Consensus size: 20
921471 AGCTATTTTT
*
921481 AGTATCGATACTT-A-ATGG
1 AGTATCGATACTTGACAGGG
921499 AGTATCGATACTTGACTAGGG
1 AGTATCGATACTTGAC-AGGG
921520 AGTATCGATACT
1 AGTATCGATACT
921532 ACATGTAGGG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 13 0.45
19 1 0.03
21 15 0.52
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (20 bp):
AGTATCGATACTTGACAGGG
Found at i:932826 original size:16 final size:15
Alignment explanation
Indices: 932805--932885 Score: 69
Period size: 16 Copynumber: 5.1 Consensus size: 15
932795 TATCCATCAG
*
932805 AAAAAAGGGAAAAATA
1 AAAAAAGAGAAAAA-A
932821 AAAAAAGAAGAAAAAA
1 AAAAAAG-AGAAAAAA
932837 AAAGAAAGAGAAAAGAA
1 AAA-AAAGAGAAAA-AA
932854 AAAGAAA-A-AAGAAAA
1 AAA-AAAGAGAA-AAAA
932869 AAGAAAAG-GAAAAAA
1 AA-AAAAGAGAAAAAA
932884 AA
1 AA
932886 TTGAATCAAG
Statistics
Matches: 57, Mismatches: 1, Indels: 15
0.78 0.01 0.21
Matches are distributed among these distances:
15 15 0.26
16 23 0.40
17 19 0.33
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.01
Consensus pattern (15 bp):
AAAAAAGAGAAAAAA
Found at i:932833 original size:17 final size:17
Alignment explanation
Indices: 932813--932870 Score: 75
Period size: 17 Copynumber: 3.4 Consensus size: 17
932803 AGAAAAAAGG
932813 GAAAAATAAAA-AAAGAA
1 GAAAAA-AAAAGAAAGAA
932830 GAAAAAAAAAGAAAG-A
1 GAAAAAAAAAGAAAGAA
*
932846 GAAAAGAAAAAGAAAAAA
1 GAAAA-AAAAAGAAAGAA
932864 GAAAAAA
1 GAAAAAA
932871 GAAAAGGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
16 10 0.27
17 21 0.57
18 6 0.16
ACGTcount: A:0.83, C:0.00, G:0.16, T:0.02
Consensus pattern (17 bp):
GAAAAAAAAAGAAAGAA
Found at i:932836 original size:13 final size:13
Alignment explanation
Indices: 932820--932875 Score: 60
Period size: 13 Copynumber: 4.2 Consensus size: 13
932810 AGGGAAAAAT
932820 AAAAAAAGAAGAA
1 AAAAAAAGAAGAA
932833 AAAAAAAGAAAGAGA
1 AAAAAAAG-AAGA-A
*
932848 AAAGAAA-AAGAA
1 AAAAAAAGAAGAA
*
932860 AAAAGAAAAAAGAA
1 AAAA-AAAGAAGAA
932874 AA
1 AA
932876 GGAAAAAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
12 4 0.11
13 15 0.41
14 11 0.30
15 7 0.19
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (13 bp):
AAAAAAAGAAGAA
Found at i:932855 original size:20 final size:20
Alignment explanation
Indices: 932823--932883 Score: 77
Period size: 20 Copynumber: 3.0 Consensus size: 20
932813 GAAAAATAAA
*
932823 AAAAGAAGAAAAAAAAAGAAAG
1 AAAA-AAGAAAAAGAAA-AAAG
*
932845 AGAAAAGAAAAAGAAAAAAG
1 AAAAAAGAAAAAGAAAAAAG
*
932865 AAAAAAGAAAAGGAAAAAA
1 AAAAAAGAAAAAGAAAAAA
932884 AATTGAATCA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 21 0.60
21 11 0.31
22 3 0.09
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (20 bp):
AAAAAAGAAAAAGAAAAAAG
Found at i:932862 original size:7 final size:7
Alignment explanation
Indices: 932823--932875 Score: 65
Period size: 7 Copynumber: 7.6 Consensus size: 7
932813 GAAAAATAAA
932823 AAAAGAAG
1 AAAA-AAG
932831 AAAAAA-
1 AAAAAAG
932837 AAAGAAAG
1 AAA-AAAG
*
932845 AGAAAAG
1 AAAAAAG
932852 -AAAAAG
1 AAAAAAG
932858 AAAAAAG
1 AAAAAAG
932865 AAAAAAG
1 AAAAAAG
932872 AAAA
1 AAAA
932876 GGAAAAAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
6 8 0.20
7 26 0.65
8 6 0.15
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:932882 original size:7 final size:6
Alignment explanation
Indices: 932822--932882 Score: 61
Period size: 6 Copynumber: 9.8 Consensus size: 6
932812 GGAAAAATAA
* *
932822 AAAAAG AAGAAAA AAAAAG AAAGAG -AAAAG AAAAAG AAAAAAG AAAAAAG
1 AAAAAG AA-AAAG AAAAAG AAAAAG AAAAAG AAAAAG -AAAAAG -AAAAAG
*
932872 AAAAGG AAAAA
1 AAAAAG AAAAA
932883 AAATTGAATC
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
5 4 0.09
6 24 0.52
7 18 0.39
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:932882 original size:14 final size:13
Alignment explanation
Indices: 932820--932885 Score: 69
Period size: 14 Copynumber: 4.8 Consensus size: 13
932810 AGGGAAAAAT
*
932820 AAAAAAAGAAGAA
1 AAAAAAAAAAGAA
*
932833 AAAAAAAGAAAGAG
1 AAAAAAA-AAAGAA
*
932847 AAAAGAAAAAGAA
1 AAAAAAAAAAGAA
932860 AAAAGAAAAAAGAA
1 AAAA-AAAAAAGAA
932874 AAGGAAAAAAAA
1 AA--AAAAAAAA
932886 TTGAATCAAG
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
13 16 0.36
14 20 0.45
15 6 0.14
16 2 0.05
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAGAA
Found at i:935143 original size:89 final size:88
Alignment explanation
Indices: 934961--935132 Score: 274
Period size: 89 Copynumber: 1.9 Consensus size: 88
934951 ATCCATAAGA
934961 CCTTCAGTGCAGGATGTTTTCAAATGAGATTTTAGAAACTAAGCCTTAGGGGGTTTCTTGATTTT
1 CCTTCAGTGCAGGATGTTTTCAAATGAGATTTTAGAAACTAAGCCTTA-GGGGTTTCTTGATTTT
* **
935026 TAATTCCTTTGGGTCATCAATAAC
65 TAAATCCTTCAGGTCATCAATAAC
* *
935050 CCTTCAGTGTAGGATGTTTTCAAATGATATTTTAGAAACTAAGCCTTCA-GGGTTTCTTGATTTT
1 CCTTCAGTGCAGGATGTTTTCAAATGAGATTTTAGAAACTAAGCCTT-AGGGGTTTCTTGATTTT
935114 TAAATCCTTCAGGTCATCA
65 TAAATCCTTCAGGTCATCA
935133 GAAAGTCCTT
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
88 31 0.40
89 45 0.58
90 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39
Consensus pattern (88 bp):
CCTTCAGTGCAGGATGTTTTCAAATGAGATTTTAGAAACTAAGCCTTAGGGGTTTCTTGATTTTT
AAATCCTTCAGGTCATCAATAAC
Found at i:935484 original size:136 final size:136
Alignment explanation
Indices: 935240--935994 Score: 1114
Period size: 136 Copynumber: 5.6 Consensus size: 136
935230 CATAATGTTT
* *
935240 TCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGATAGAGGGAGAAGACGTTCAT
1 TCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCAT
** * *
935305 AATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCTGTGACACCTTGCTT
66 AATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGGCATTTCGAATCAGTGACACCTCGCTT
*
935370 GAGAGA
131 GAGGGA
935376 TCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCAT
1 TCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCAT
* *
935441 AATGAGAAGAGCTTGTTCAACCTATCACTCGATTCACGGTATTTCGAATCAGTGACACCTCGCTT
66 AATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGGCATTTCGAATCAGTGACACCTCGCTT
935506 GAGGGA
131 GAGGGA
*
935512 TCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAAAAGTTCAT
1 TCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCAT
* * * *
935577 AATGAGAAGATCTTGTTCGACCTATCACTTGATTCACGGCATTTCAAATCAGCGACACCTCGCTT
66 AATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGGCATTTCGAATCAGTGACACCTCGCTT
935642 GAGGGA
131 GAGGGA
* *
935648 TCAACATTTCCAATGAAGAGTTTATAAT--G-AGAACTCATCCGACAGAGGGAGAAGAAGTTCAT
1 TCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCAT
** * * *
935710 AATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACAACATTTTGAATCAATGACACCTCACTT
66 AATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGGCATTTCGAATCAGTGACACCTCGCTT
935775 GAGGGA
131 GAGGGA
** * * * *
935781 TTGACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCAACAAAGAGAGAATAAGTTCAT
1 TCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCAT
* * * *
935846 AATGAGAAGATCTTGTTCGACCTATCACTCGATTCATGGCATTTCGAATCAGGGACGCCTCGCTT
66 AATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGGCATTTCGAATCAGTGACACCTCGCTT
935911 GAGGGA
131 GAGGGA
* * * *
935917 TTGAA-ATTTCTAATGGAGAGTTCATAATGAGAAGAACTCGTCCTA-A-A-GGAG-A-AAGTTCA
1 -TCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCA
*
935976 TAATGAGAAGAACTTGTTC
65 TAATGAGAAGAGCTTGTTC
935995 CTTTCAAATT
Statistics
Matches: 565, Mismatches: 50, Indels: 13
0.90 0.08 0.02
Matches are distributed among these distances:
131 25 0.04
132 1 0.00
133 121 0.21
134 2 0.00
135 2 0.00
136 412 0.73
137 2 0.00
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.26
Consensus pattern (136 bp):
TCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCAT
AATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGGCATTTCGAATCAGTGACACCTCGCTT
GAGGGA
Found at i:935844 original size:269 final size:271
Alignment explanation
Indices: 935240--935994 Score: 1112
Period size: 269 Copynumber: 2.8 Consensus size: 271
935230 CATAATGTTT
* * *
935240 TCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGATAGAGGGAGAAGACGTTCAT
1 TCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAAAAGTTCAT
* ** * * *
935305 AATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCTGTGACACCTTGCTT
66 AATGAGAAGATCTTGTTCGACCTATCACTCGATTCACGGCATTTCGAATCAGCGACACCTCGCTT
*
935370 GAGAGATCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAA
131 GAGGGATCAACATTTCCAATGGAGAGTTCATAAT-AGAAGAACTCATCCGACAGAGGGAGAAGAA
*** *
935435 GTTCATAATGAGAAGAGCTTGTTCAACCTATCACTCGATTCACGGTATTTCGAATCAGTGACACC
195 GTTCATAATGAGAAGAGCTTGTTCAACCTATCACTCGATTCACAACATTTCGAATCAATGACACC
*
935500 TCGCTTGAGGGA
260 TCACTTGAGGGA
935512 TCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAAAAGTTCAT
1 TCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAAAAGTTCAT
* *
935577 AATGAGAAGATCTTGTTCGACCTATCACTTGATTCACGGCATTTCAAATCAGCGACACCTCGCTT
66 AATGAGAAGATCTTGTTCGACCTATCACTCGATTCACGGCATTTCGAATCAGCGACACCTCGCTT
* *
935642 GAGGGATCAACATTTCCAATGAAGAGTTTATAAT-G-AGAACTCATCCGACAGAGGGAGAAGAAG
131 GAGGGATCAACATTTCCAATGGAGAGTTCATAATAGAAGAACTCATCCGACAGAGGGAGAAGAAG
* *
935705 TTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACAACATTTTGAATCAATGACACCT
196 TTCATAATGAGAAGAGCTTGTTCAACCTATCACTCGATTCACAACATTTCGAATCAATGACACCT
935770 CACTTGAGGGA
261 CACTTGAGGGA
** * * * *
935781 TTGACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCAACAAAGAGAGAATAAGTTCAT
1 TCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAAAAGTTCAT
* * *
935846 AATGAGAAGATCTTGTTCGACCTATCACTCGATTCATGGCATTTCGAATCAGGGACGCCTCGCTT
66 AATGAGAAGATCTTGTTCGACCTATCACTCGATTCACGGCATTTCGAATCAGCGACACCTCGCTT
* * * *
935911 GAGGGATTGAA-ATTTCTAATGGAGAGTTCATAATGAGAAGAACTCGTCCTA-A-A-GGAG-A-A
131 GAGGGA-TCAACATTTCCAATGGAGAGTTCATAAT-AGAAGAACTCATCCGACAGAGGGAGAAGA
*
935970 AGTTCATAATGAGAAGAACTTGTTC
194 AGTTCATAATGAGAAGAGCTTGTTC
935995 CTTTCAAATT
Statistics
Matches: 440, Mismatches: 39, Indels: 13
0.89 0.08 0.03
Matches are distributed among these distances:
267 25 0.06
268 1 0.00
269 246 0.56
270 5 0.01
271 2 0.00
272 161 0.37
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.26
Consensus pattern (271 bp):
TCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAAAAGTTCAT
AATGAGAAGATCTTGTTCGACCTATCACTCGATTCACGGCATTTCGAATCAGCGACACCTCGCTT
GAGGGATCAACATTTCCAATGGAGAGTTCATAATAGAAGAACTCATCCGACAGAGGGAGAAGAAG
TTCATAATGAGAAGAGCTTGTTCAACCTATCACTCGATTCACAACATTTCGAATCAATGACACCT
CACTTGAGGGA
Found at i:938101 original size:2 final size:2
Alignment explanation
Indices: 938094--938136 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
938084 ATTGGTGTAT
938094 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
938136 T
1 T
938137 GGTATAATGC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:949040 original size:19 final size:19
Alignment explanation
Indices: 949016--949089 Score: 62
Period size: 19 Copynumber: 3.9 Consensus size: 19
949006 TGACTTTTTG
949016 GTCAAAGTCAACGGGTCAA
1 GTCAAAGTCAACGGGTCAA
* * *
949035 GTCAAAGTTAATGGGTCGA
1 GTCAAAGTCAACGGGTCAA
** *
949054 -TTTAAGTCAACGGGTC-G
1 GTCAAAGTCAACGGGTCAA
*
949071 GTTCAAAGTCAATGGGTCA
1 G-TCAAAGTCAACGGGTCA
949090 GACCGGTTCA
Statistics
Matches: 41, Mismatches: 11, Indels: 5
0.72 0.19 0.09
Matches are distributed among these distances:
18 12 0.29
19 29 0.71
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.24
Consensus pattern (19 bp):
GTCAAAGTCAACGGGTCAA
Done.