Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007867.1 Hibiscus syriacus cultivar Beakdansim tig00110239_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3477501
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 6 of 18
Found at i:951322 original size:101 final size:104
Alignment explanation
Indices: 951180--951385 Score: 391
Period size: 101 Copynumber: 2.0 Consensus size: 104
951170 AAGATTACAA
951180 TTTGCAAACTTACAAGAAAACCTCACAATGTAAGATGTTTGCACAATTCTAGAACAAAGAAAAGA
1 TTTGCAAACTTACAAGAAAACCTCACAATGTAAGATGTTTGCACAATTCTAGAACAAAGAAAAGA
951245 ACACTCAAGGATAAATAC-ATTGAGTAC-AAAGTGTTCT
66 ACACTCAAGGATAAATACAATTGAGTACAAAAGTGTTCT
951282 TTTGCAAACTTACAAGAAAA-CTCACAATGTAAGATGTTTGCACAATTCTAGAACAAAGAAAAGA
1 TTTGCAAACTTACAAGAAAACCTCACAATGTAAGATGTTTGCACAATTCTAGAACAAAGAAAAGA
951346 ACACTCAAGGATAAATACAATTGAGTACAAAAGTGTTCT
66 ACACTCAAGGATAAATACAATTGAGTACAAAAGTGTTCT
951385 T
1 T
951386 GAAAGCAAAT
Statistics
Matches: 102, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
101 62 0.61
102 29 0.28
103 11 0.11
ACGTcount: A:0.45, C:0.16, G:0.15, T:0.25
Consensus pattern (104 bp):
TTTGCAAACTTACAAGAAAACCTCACAATGTAAGATGTTTGCACAATTCTAGAACAAAGAAAAGA
ACACTCAAGGATAAATACAATTGAGTACAAAAGTGTTCT
Found at i:951764 original size:64 final size:63
Alignment explanation
Indices: 951691--951852 Score: 209
Period size: 64 Copynumber: 2.5 Consensus size: 63
951681 TGGTGCACCA
*
951691 AGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAAAAATAGCCTGA-TGCATCGATGCATGG
1 AGTGTGCATCGATGCATGAAATGCATTCGATGTTTG--AAATAGCCAGAGTGCATCGATGCATGG
** * **
951755 CTTGTGCATCGATGCATCAAATGCATTCGATGTTTTGAAATATTCAGAGTGCATCGATGCATGG
1 AGTGTGCATCGATGCATGAAATGCATTCGATG-TTTGAAATAGCCAGAGTGCATCGATGCATGG
* * *
951819 AGAGTGCATCGGTGCATGGAATGCATTCGATGTT
1 AGTGTGCATCGATGCATGAAATGCATTCGATGTT
951853 CAATTAATTC
Statistics
Matches: 84, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
63 10 0.12
64 70 0.83
65 4 0.05
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (63 bp):
AGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAAATAGCCAGAGTGCATCGATGCATGG
Found at i:951824 original size:19 final size:19
Alignment explanation
Indices: 951800--951850 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
951790 TGAAATATTC
951800 AGAGTGCATCGATGCATGG
1 AGAGTGCATCGATGCATGG
*
951819 AGAGTGCATCGGTGCATGG
1 AGAGTGCATCGATGCATGG
951838 A-A-TGCATTCGATG
1 AGAGTGCA-TCGATG
951851 TTCAATTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 4 0.14
18 6 0.21
19 19 0.66
ACGTcount: A:0.25, C:0.16, G:0.35, T:0.24
Consensus pattern (19 bp):
AGAGTGCATCGATGCATGG
Found at i:951872 original size:64 final size:63
Alignment explanation
Indices: 951694--951872 Score: 193
Period size: 64 Copynumber: 2.8 Consensus size: 63
951684 TGCACCAAGT
* * * ***
951694 GTGCATCGATGCATGAAATGCATTCGATGTTTGAAAAATAGCCTGATGCATCGATGCATGGCTT
1 GTGCATCGATGCATGAAATGCATTCGATGTTTGAATAAT-TCATGATGCATCGATGCATGGAGA
*
951758 GTGCATCGATGCATCAAATGCATTCGATGTTTTGAA-ATATTCA-GAGTGCATCGATGCATGGAG
1 GTGCATCGATGCATGAAATGCATTCGATG-TTTGAATA-ATTCATGA-TGCATCGATGCATGGAG
951821 A
63 A
* * *
951822 GTGCATCGGTGCATGGAATGCATTCGATG-TTCAATTAATTCATCGATGCAT
1 GTGCATCGATGCATGAAATGCATTCGATGTTTGAA-TAATTCAT-GATGCAT
951873 GGACTGATGC
Statistics
Matches: 98, Mismatches: 10, Indels: 14
0.80 0.08 0.11
Matches are distributed among these distances:
62 4 0.04
63 7 0.07
64 77 0.79
65 10 0.10
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.31
Consensus pattern (63 bp):
GTGCATCGATGCATGAAATGCATTCGATGTTTGAATAATTCATGATGCATCGATGCATGGAGA
Found at i:954075 original size:13 final size:13
Alignment explanation
Indices: 954057--954083 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
954047 TTATAGACGC
954057 GCATATGAAGACT
1 GCATATGAAGACT
954070 GCATATGAAGACT
1 GCATATGAAGACT
954083 G
1 G
954084 TCCAACTATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.15, G:0.26, T:0.22
Consensus pattern (13 bp):
GCATATGAAGACT
Found at i:956413 original size:167 final size:163
Alignment explanation
Indices: 956137--956467 Score: 626
Period size: 167 Copynumber: 2.0 Consensus size: 163
956127 ACCTCCAAGT
956137 ACCGGTTCACCTAACTCAAGTATCTAAAAGAGAGAATTTAAGGGGTGTAAGCTATTGAACTTAGT
1 ACCGGTTCACCTAACTCAAGTATCTAAAAGAGAGAATTTAAGGGGTGTAAGCTATTGAACTTAGT
956202 ATGTCTCTAAAGTGCAAACAATCACAATCATATCATATCCCCAACAACCAACAACAATCAAAACC
66 ATGTCTCTAAAGTGCAAACAATCACAATCATATCATATCCCCAACAA-C--CAACAATC-AAACC
956267 CAATCATCCAAAAATAAATCATAATTTTGAGTCAAAC
127 CAATCATCCAAAAATAAATCATAATTTTGAGTCAAAC
956304 ACCGGTTCACCTAACTCAAGTATCTAAAAGAGAGAATTTAAGGGGTGTAAGCTATTGAACTTAGT
1 ACCGGTTCACCTAACTCAAGTATCTAAAAGAGAGAATTTAAGGGGTGTAAGCTATTGAACTTAGT
956369 ATGTCTCTAAAGTGCAAACAATCACAATCATATCATATCCCCAACAACCAACAATCAAACCCAAT
66 ATGTCTCTAAAGTGCAAACAATCACAATCATATCATATCCCCAACAACCAACAATCAAACCCAAT
956434 CATCCAAAAATAAATCATAATTTTGAGTCAAAC
131 CATCCAAAAATAAATCATAATTTTGAGTCAAAC
956467 A
1 A
956468 GTGATAACAC
Statistics
Matches: 164, Mismatches: 0, Indels: 4
0.98 0.00 0.02
Matches are distributed among these distances:
163 43 0.26
164 8 0.05
166 1 0.01
167 112 0.68
ACGTcount: A:0.42, C:0.22, G:0.11, T:0.24
Consensus pattern (163 bp):
ACCGGTTCACCTAACTCAAGTATCTAAAAGAGAGAATTTAAGGGGTGTAAGCTATTGAACTTAGT
ATGTCTCTAAAGTGCAAACAATCACAATCATATCATATCCCCAACAACCAACAATCAAACCCAAT
CATCCAAAAATAAATCATAATTTTGAGTCAAAC
Found at i:964620 original size:15 final size:15
Alignment explanation
Indices: 964568--964625 Score: 54
Period size: 15 Copynumber: 4.1 Consensus size: 15
964558 AATAATATAA
964568 ATATAGTTTGAAAAT
1 ATATAGTTTGAAAAT
*
964583 AATATAG--T--ATAT
1 -ATATAGTTTGAAAAT
964595 ATATAGTTTGAAAAT
1 ATATAGTTTGAAAAT
964610 ATAGTAG-TTGAAAAT
1 ATA-TAGTTTGAAAAT
964625 A
1 A
964626 GTAAATATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 11
0.73 0.04 0.23
Matches are distributed among these distances:
11 6 0.17
12 3 0.09
13 1 0.03
14 1 0.03
15 15 0.43
16 9 0.26
ACGTcount: A:0.48, C:0.00, G:0.14, T:0.38
Consensus pattern (15 bp):
ATATAGTTTGAAAAT
Found at i:964640 original size:42 final size:40
Alignment explanation
Indices: 964566--964645 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 40
964556 AAAATAATAT
*
964566 AAATATAGTTTGAAAATAATATAGTATATATATAGTTTGA
1 AAATATAGTTTGAAAATAATATAATATATATATAGTTTGA
*
964606 AAATATAGTAGTTGAAAATAGTA-AATATATTATATAGTTT
1 AAATATAGT--TTGAAAATAATATAATATA-TATATAGTTT
964646 TTAAAATAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
40 9 0.26
41 5 0.14
42 21 0.60
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.40
Consensus pattern (40 bp):
AAATATAGTTTGAAAATAATATAATATATATATAGTTTGA
Found at i:964654 original size:28 final size:27
Alignment explanation
Indices: 964620--964676 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
964610 ATAGTAGTTG
964620 AAAATAGTAAATATATTATATAGTTTTT
1 AAAATAGTAAAT-TATTATATAGTTTTT
** *
964648 AAAATAGTCTATTTTTATATAGTTTTT
1 AAAATAGTAAATTATTATATAGTTTTT
964675 AA
1 AA
964677 CAGTAATATA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 16 0.62
28 10 0.38
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (27 bp):
AAAATAGTAAATTATTATATAGTTTTT
Found at i:970500 original size:16 final size:16
Alignment explanation
Indices: 970479--970536 Score: 61
Period size: 16 Copynumber: 3.8 Consensus size: 16
970469 CACCTGAAGG
970479 AAAAGAAGAAAATATA
1 AAAAGAAGAAAATATA
*
970495 AAAAG-AGAAAAAAATA
1 AAAAGAAG-AAAATATA
970511 AAAA-AA-AAAATA-A
1 AAAAGAAGAAAATATA
970524 AAAAGAAGGAAAA
1 AAAAGAA-GAAAA
970537 AAAAGAAAAC
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
13 5 0.14
14 7 0.20
15 2 0.06
16 21 0.60
ACGTcount: A:0.81, C:0.00, G:0.12, T:0.07
Consensus pattern (16 bp):
AAAAGAAGAAAATATA
Found at i:970508 original size:18 final size:17
Alignment explanation
Indices: 970482--970539 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 17
970472 CTGAAGGAAA
*
970482 AGAAGAAAATATAAAAAG
1 AGAAAAAAATA-AAAAAG
970500 AGAAAAAAATAAAAAA-
1 AGAAAAAAATAAAAAAG
*
970516 A-AAAATAAA-AAAGAAG
1 AGAAAA-AAATAAAAAAG
970532 -GAAAAAAA
1 AGAAAAAAA
970540 AGAAAACTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
15 12 0.34
16 8 0.23
17 5 0.14
18 10 0.29
ACGTcount: A:0.81, C:0.00, G:0.12, T:0.07
Consensus pattern (17 bp):
AGAAAAAAATAAAAAAG
Found at i:970525 original size:19 final size:18
Alignment explanation
Indices: 970487--970558 Score: 54
Period size: 19 Copynumber: 3.8 Consensus size: 18
970477 GGAAAAGAAG
* * *
970487 AAAATATAAAAAGAGAAA
1 AAAATAAAAAAAAAAAAA
970505 AAAATAAAAAAAAAAATAA
1 AAAATAAAAAAAAAAA-AA
* * *
970524 AAAAGAAGGAAAAAAAAGA
1 AAAATAA-AAAAAAAAAAA
*
970543 AAACTAAAATAAAAAA
1 AAAATAAAA-AAAAAA
970559 GGAGGTTCAA
Statistics
Matches: 42, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
18 14 0.33
19 20 0.48
20 8 0.19
ACGTcount: A:0.82, C:0.01, G:0.08, T:0.08
Consensus pattern (18 bp):
AAAATAAAAAAAAAAAAA
Found at i:970539 original size:31 final size:29
Alignment explanation
Indices: 970478--970559 Score: 85
Period size: 31 Copynumber: 2.7 Consensus size: 29
970468 TCACCTGAAG
970478 GAAAAGAAGAAAATATAAAAAGAGAAAAAAATA
1 GAAAA-AA-AAAATA-AAAAAGAGAAAAAAA-A
970511 -AAAAAAAAAATAAAAAAGAAGGAAAAAAAA
1 GAAAAAAAAAATAAAAAAG-A-GAAAAAAAA
**
970541 GAAAACTAAAATAAAAAAG
1 GAAAAAAAAAATAAAAAAG
970560 GAGGTTCAAG
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
29 6 0.14
30 8 0.18
31 26 0.59
32 4 0.09
ACGTcount: A:0.79, C:0.01, G:0.12, T:0.07
Consensus pattern (29 bp):
GAAAAAAAAAATAAAAAAGAGAAAAAAAA
Found at i:972184 original size:130 final size:132
Alignment explanation
Indices: 972050--972484 Score: 332
Period size: 132 Copynumber: 3.3 Consensus size: 132
972040 GGCCGATCCC
* * * * *
972050 GATTCTATCTTTGCTAAAGAGTAGT-AAAGTGAATC-AAGTTTTTT-GATTTGATATTCCCTGTA
1 GATTCAATCTTTGCTAAAGAGCAGTGAAA-TGAATCAAAATTTTTTAGATCTGATATTCCCTGAA
* * * * * *
972112 TAA-AAGTATAGCACATCCCTTTTTTCATATTTGATCTTCCCTGAAGAGCAGTGGAGCAAATCTA
65 GAACAA-CAGAGCACATCCCTTTTTCCAGATTTGATCTTCCCTGAAGAGCAGTGGACCAAATCTA
972176 GCTT
129 GCTT
* * * * *
972180 GATTCAATCTTTTCTGAAGAGCAGTGGAATGAATCAAAATTTTTTAGATCTGATCTTCTCTGAAG
1 GATTCAATCTTTGCTAAAGAGCAGTGAAATGAATCAAAATTTTTTAGATCTGATATTCCCTGAAG
* * ** * *
972245 AACAACAGAGCATATCTCTTTTTCCAGATTTGATCTTCTTTTAAGAGCAGTGGACCAAATCTACC
66 AACAACAGAGCACATCCCTTTTTCCAGATTTGATCTTCCCTGAAGAGCAGTGGACCAAATCTA-G
972310 CTT
130 CTT
* * ** * ** * *
972313 -ATTTAATCATCCCTGAAGAATAGT-AGAGTGAATCAAAATTTTTTAGATCTGATCTTCCCTGAA
1 GATTCAATCTTTGCTAAAGAGCAGTGA-AATGAATCAAAATTTTTTAGATCTGATATTCCCTGAA
* * * * * *
972376 GAGCAGTC-GAGCATAT-CCTTTTTCCCAGATTTGATCTTCCCTAAAAAGCAGTGGAAC-AA-CT
65 GAACA-ACAGAGCACATCCCTTTTT-CCAGATTTGATCTTCCCTGAAGAGCAGTGGACCAAATCT
* **
972437 ACCCC
128 AGCTT
** * * * *
972442 GATTCAATCTTCCCTGAAGAGTAGTGGAGTGAATCAAAATTTT
1 GATTCAATCTTTGCTAAAGAGCAGTGAAATGAATCAAAATTTT
972485 CCAAATCTAA
Statistics
Matches: 250, Mismatches: 45, Indels: 20
0.79 0.14 0.06
Matches are distributed among these distances:
129 2 0.01
130 67 0.27
131 18 0.07
132 157 0.63
133 6 0.02
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.34
Consensus pattern (132 bp):
GATTCAATCTTTGCTAAAGAGCAGTGAAATGAATCAAAATTTTTTAGATCTGATATTCCCTGAAG
AACAACAGAGCACATCCCTTTTTCCAGATTTGATCTTCCCTGAAGAGCAGTGGACCAAATCTAGC
TT
Found at i:972293 original size:132 final size:131
Alignment explanation
Indices: 972129--972484 Score: 441
Period size: 132 Copynumber: 2.7 Consensus size: 131
972119 ATAGCACATC
* * * * * **
972129 CCTTTTTTCATATTTGATCTTCCCTGAAGAGCAGTGGAGCAAATCTAGCTTGATTCAATCTTTTC
1 CCTTTTTCCAGATTTGATCTTCCCTAAAGAGCAGTGGAACAAATCTACCTTGATTCAATCTTCCC
* * *
972194 TGAAGAGCAGTGGAATGAATCAAAATTTTTTAGATCTGATCTTCTCTGAAGAACA-ACAGAGCAT
66 TGAAGAGTAGTGGAGTGAATCAAAATTTTTTAGATCTGATCTTCCCTGAAGAACAGAC-GAGCAT
972258 AT
130 AT
** * * * *
972260 CTCTTTTTCCAGATTTGATCTTCTTTTAAGAGCAGTGGACCAAATCTACCCTT-ATTTAATCATC
1 C-CTTTTTCCAGATTTGATCTTCCCTAAAGAGCAGTGGAACAAATCTA-CCTTGATTCAATCTTC
* * * *
972324 CCTGAAGAATAGTAGAGTGAATCAAAATTTTTTAGATCTGATCTTCCCTGAAGAGCAGTCGAGCA
64 CCTGAAGAGTAGTGGAGTGAATCAAAATTTTTTAGATCTGATCTTCCCTGAAGAACAGACGAGCA
972389 TAT
129 TAT
* **
972392 CCTTTTTCCCAGATTTGATCTTCCCTAAAAAGCAGTGGAAC-AA-CTACCCCGATTCAATCTTCC
1 CCTTTTT-CCAGATTTGATCTTCCCTAAAGAGCAGTGGAACAAATCTACCTTGATTCAATCTTCC
972455 CTGAAGAGTAGTGGAGTGAATCAAAATTTT
65 CTGAAGAGTAGTGGAGTGAATCAAAATTTT
972485 CCAAATCTAA
Statistics
Matches: 191, Mismatches: 29, Indels: 11
0.83 0.13 0.05
Matches are distributed among these distances:
129 2 0.01
130 41 0.21
131 9 0.05
132 135 0.71
133 4 0.02
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (131 bp):
CCTTTTTCCAGATTTGATCTTCCCTAAAGAGCAGTGGAACAAATCTACCTTGATTCAATCTTCCC
TGAAGAGTAGTGGAGTGAATCAAAATTTTTTAGATCTGATCTTCCCTGAAGAACAGACGAGCATA
T
Found at i:972542 original size:130 final size:129
Alignment explanation
Indices: 972130--972544 Score: 388
Period size: 132 Copynumber: 3.2 Consensus size: 129
972120 TAGCACATCC
* * * * * * **
972130 CTTTTTTCATATTTGATCTTCCCTGAAGAGCAGTGGAGCAAATCTAGCTTGATTCAATCTTTTCT
1 CTTTTTCCAGATTTGATCTTCCCTAAAGAGCAGTGGAACAAATCTACCCTGATTCAATCTTCCCT
* * *
972195 GAAGAGCAGTGGAATGAATCAAAATTTTTTAGATCTGATCTTCTCTGAAGAACAACA-GAGCATA
66 GAAGAGTAGTGGAGTGAATCAAAATTTTTTAGATCTGATCTTC-CTG-AGAAGAA-ATGAGCATA
*
972259 TCT
128 T-A
** * * * * *
972262 CTTTTTCCAGATTTGATCTTCTTTTAAGAGCAGTGGACCAAATCTACCCTTATTTAATCATCCCT
1 CTTTTTCCAGATTTGATCTTCCCTAAAGAGCAGTGGAACAAATCTACCCTGATTCAATCTTCCCT
* * * *
972327 GAAGAATAGTAGAGTGAATCAAAATTTTTTAGATCTGATCTTCCCTGA-AGAGCAGTCGAGCATA
66 GAAGAGTAGTGGAGTGAATCAAAATTTTTTAGATCTGATCTT-CCTGAGA-AGAAAT-GAGCATA
*
972391 TC
128 TA
* *
972393 CTTTTTCCCAGATTTGATCTTCCCTAAAAAGCAGTGGAAC-AA-CTACCCCGATTCAATCTTCCC
1 CTTTTT-CCAGATTTGATCTTCCCTAAAGAGCAGTGGAACAAATCTACCCTGATTCAATCTTCCC
** * * * *
972456 TGAAGAGTAGTGGAGTGAATCAAAATTTTCCAAATCTAATATTGCCTGAGAAGAAATGAAGCAAA
65 TGAAGAGTAGTGGAGTGAATCAAAATTTTTTAGATCTGATCTT-CCTGAGAAGAAATG-AGCATA
972521 TAA
128 T-A
* * *
972524 CTTTTTTCATATTCGATCTTC
1 CTTTTTCCAGATTTGATCTTC
972545 TTTAAAGACC
Statistics
Matches: 230, Mismatches: 45, Indels: 18
0.78 0.15 0.06
Matches are distributed among these distances:
129 1 0.00
130 81 0.35
131 18 0.08
132 129 0.56
133 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (129 bp):
CTTTTTCCAGATTTGATCTTCCCTAAAGAGCAGTGGAACAAATCTACCCTGATTCAATCTTCCCT
GAAGAGTAGTGGAGTGAATCAAAATTTTTTAGATCTGATCTTCCTGAGAAGAAATGAGCATATA
Found at i:972926 original size:21 final size:20
Alignment explanation
Indices: 972878--972935 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 20
972868 TTTGAAAATA
972878 ATAAATAATATTATATAGTTTT
1 ATAAAT-ATA-TATATAGTTTT
* *
972900 AAAAATAGTATATTTAGTTTT
1 ATAAATA-TATATATAGTTTT
*
972921 TTAAATATATATATA
1 ATAAATATATATATA
972936 TATATATATA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
20 7 0.23
21 16 0.53
22 7 0.23
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.48
Consensus pattern (20 bp):
ATAAATATATATATAGTTTT
Found at i:972930 original size:2 final size:2
Alignment explanation
Indices: 972925--972958 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
972915 AGTTTTTTAA
972925 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
972959 GGTTCTAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 28 0.93
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:977613 original size:26 final size:24
Alignment explanation
Indices: 977584--977646 Score: 71
Period size: 22 Copynumber: 2.7 Consensus size: 24
977574 TGAGTAATTG
*
977584 TAGAGGGTTGTATCGATATTTGTTGA
1 TAGAGGG--GTATCGATACTTGTTGA
977610 TAGA--GGTATCGATACTTGTTGA
1 TAGAGGGGTATCGATACTTGTTGA
977632 TAGA--GGTATCGATAC
1 TAGAGGGGTATCGATAC
977647 CATCAGGGTA
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
22 31 0.86
24 1 0.03
26 4 0.11
ACGTcount: A:0.27, C:0.08, G:0.29, T:0.37
Consensus pattern (24 bp):
TAGAGGGGTATCGATACTTGTTGA
Found at i:977618 original size:22 final size:22
Alignment explanation
Indices: 977593--977646 Score: 99
Period size: 22 Copynumber: 2.5 Consensus size: 22
977583 GTAGAGGGTT
*
977593 GTATCGATATTTGTTGATAGAG
1 GTATCGATACTTGTTGATAGAG
977615 GTATCGATACTTGTTGATAGAG
1 GTATCGATACTTGTTGATAGAG
977637 GTATCGATAC
1 GTATCGATAC
977647 CATCAGGGTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.28, C:0.09, G:0.26, T:0.37
Consensus pattern (22 bp):
GTATCGATACTTGTTGATAGAG
Found at i:977680 original size:20 final size:20
Alignment explanation
Indices: 977636--977687 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
977626 TGTTGATAGA
977636 GGTATCGATACCATCAGGGT
1 GGTATCGATACCATCAGGGT
* *
977656 AGTATCGATACC-TGAGGGAT
1 GGTATCGATACCATCAGGG-T
*
977676 GGTATTGATACC
1 GGTATCGATACC
977688 CTTAAAACAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 5 0.19
20 22 0.81
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (20 bp):
GGTATCGATACCATCAGGGT
Found at i:977823 original size:20 final size:21
Alignment explanation
Indices: 977781--977833 Score: 72
Period size: 20 Copynumber: 2.5 Consensus size: 21
977771 TACATGCGGA
977781 GGTATCGATACCCTTGAAGGGT
1 GGTATCGATACCCTT-AAGGGT
*
977803 GGTATCGGTACCCTT-AGGGT
1 GGTATCGATACCCTTAAGGGT
*
977823 GGTACCGATAC
1 GGTATCGATAC
977834 TTCCAAGCAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 14 0.50
22 14 0.50
ACGTcount: A:0.21, C:0.21, G:0.32, T:0.26
Consensus pattern (21 bp):
GGTATCGATACCCTTAAGGGT
Found at i:978591 original size:21 final size:21
Alignment explanation
Indices: 978565--978701 Score: 111
Period size: 21 Copynumber: 6.3 Consensus size: 21
978555 TCGAGGGTTT
*
978565 TATGTGGTTCTTCGGGACAAA
1 TATGTGGTCCTTCGGGACAAA
*
978586 TATGTGG-CACTTTGGTGA-AAA
1 TATGTGGTC-CTTCGG-GACAAA
*
978607 CCTATGTGGTCCTTCGGGACAAT
1 --TATGTGGTCCTTCGGGACAAA
*
978630 TATGTGGTCCTTCGGGATAAA
1 TATGTGGTCCTTCGGGACAAA
978651 TATGTGG-CACTTCGGTG-CAAA
1 TATGTGGTC-CTTCGG-GACAAA
** *
978672 CCTATGTGGTCCTTTAGGACAAT
1 --TATGTGGTCCTTCGGGACAAA
978695 TATGTGG
1 TATGTGG
978702 AACTTCGGTG
Statistics
Matches: 94, Mismatches: 10, Indels: 24
0.73 0.08 0.19
Matches are distributed among these distances:
20 1 0.01
21 57 0.61
22 6 0.06
23 28 0.30
24 2 0.02
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.33
Consensus pattern (21 bp):
TATGTGGTCCTTCGGGACAAA
Found at i:978645 original size:65 final size:65
Alignment explanation
Indices: 978564--978701 Score: 222
Period size: 65 Copynumber: 2.1 Consensus size: 65
978554 GTCGAGGGTT
* * *
978564 TTATGTGGTTCTTCGGGACAAATATGTGGCACTTTGGTGAAAACCTATGTGGTCCTTCGGGACAA
1 TTATGTGGTCCTTCGGGACAAATATGTGGCACTTCGGTGAAAACCTATGTGGTCCTTCAGGACAA
* * *
978629 TTATGTGGTCCTTCGGGATAAATATGTGGCACTTCGGTGCAAACCTATGTGGTCCTTTAGGACAA
1 TTATGTGGTCCTTCGGGACAAATATGTGGCACTTCGGTGAAAACCTATGTGGTCCTTCAGGACAA
978694 TTATGTGG
1 TTATGTGG
978702 AACTTCGGTG
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
65 67 1.00
ACGTcount: A:0.22, C:0.17, G:0.28, T:0.33
Consensus pattern (65 bp):
TTATGTGGTCCTTCGGGACAAATATGTGGCACTTCGGTGAAAACCTATGTGGTCCTTCAGGACAA
Found at i:978678 original size:44 final size:44
Alignment explanation
Indices: 978630--978715 Score: 127
Period size: 44 Copynumber: 2.0 Consensus size: 44
978620 TCGGGACAAT
* * *
978630 TATGTGGTCCTTCGGGATAAATATGTGGCACTTCGGTGCAAACC
1 TATGTGGTCCTTCAGGACAAATATGTGGAACTTCGGTGCAAACC
* *
978674 TATGTGGTCCTTTAGGACAATTATGTGGAACTTCGGTGCAAA
1 TATGTGGTCCTTCAGGACAAATATGTGGAACTTCGGTGCAAA
978716 TTATGAGATG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.31
Consensus pattern (44 bp):
TATGTGGTCCTTCAGGACAAATATGTGGAACTTCGGTGCAAACC
Found at i:982896 original size:11 final size:11
Alignment explanation
Indices: 982880--982905 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
982870 TATTTGGAAG
982880 TTTTTTTTTCT
1 TTTTTTTTTCT
982891 TTTTTTTTTCT
1 TTTTTTTTTCT
982902 TTTT
1 TTTT
982906 CTTGCTATGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTTTTTTCT
Found at i:983486 original size:20 final size:21
Alignment explanation
Indices: 983461--983511 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
983451 GTTGATAGAG
983461 GTATCGATACCATCAGGG-TA
1 GTATCGATACCATCAGGGATA
* *
983481 GTATCGATA-CTTGAGGGATA
1 GTATCGATACCATCAGGGATA
983501 GTATCGATACC
1 GTATCGATACC
983512 CTTAAAACAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 6 0.22
20 20 0.74
21 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (21 bp):
GTATCGATACCATCAGGGATA
Found at i:984459 original size:65 final size:65
Alignment explanation
Indices: 984378--984523 Score: 206
Period size: 65 Copynumber: 2.2 Consensus size: 65
984368 GTCGAGGGTT
* * * *
984378 TTATGTGGTCTTTCGGGATAAATATGTGGCACTTCGGTGCAAACCTATGTGGT-CATTCGGGATA
1 TTATGTGGTCCTTCGGGACAAATATGTGGCACTTCGGTGCAAACCTATGTGGTCCATT-AGGAAA
984442 A
65 A
* *
984443 TTATGTGGTCCTTCGGGACAAATATGTGGCACTTCGTTGTAAACCTATGTGGTCCATTAGGAAAA
1 TTATGTGGTCCTTCGGGACAAATATGTGGCACTTCGGTGCAAACCTATGTGGTCCATTAGGAAAA
984508 TTATGTGG-CACTTCGG
1 TTATGTGGTC-CTTCGG
984524 TGTAAATTAC
Statistics
Matches: 73, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
64 1 0.01
65 68 0.93
66 4 0.05
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.34
Consensus pattern (65 bp):
TTATGTGGTCCTTCGGGACAAATATGTGGCACTTCGGTGCAAACCTATGTGGTCCATTAGGAAAA
Found at i:984477 original size:21 final size:22
Alignment explanation
Indices: 984379--984478 Score: 95
Period size: 21 Copynumber: 4.7 Consensus size: 22
984369 TCGAGGGTTT
* *
984379 TATGTGGTC-TTTCGGGATAAA
1 TATGTGGTCACTTCGGGACAAA
984400 TATGTGG-CACTTCGGTG-CAAA
1 TATGTGGTCACTTCGG-GACAAA
* *
984421 CCTATGTGGTCA-TTCGGGATAAT
1 --TATGTGGTCACTTCGGGACAAA
984444 TATGTGGTC-CTTCGGGACAAA
1 TATGTGGTCACTTCGGGACAAA
984465 TATGTGG-CACTTCG
1 TATGTGGTCACTTCG
984479 TTGTAAACCT
Statistics
Matches: 65, Mismatches: 6, Indels: 16
0.75 0.07 0.18
Matches are distributed among these distances:
20 2 0.03
21 45 0.69
22 2 0.03
23 14 0.22
24 2 0.03
ACGTcount: A:0.22, C:0.17, G:0.28, T:0.33
Consensus pattern (22 bp):
TATGTGGTCACTTCGGGACAAA
Found at i:984492 original size:44 final size:44
Alignment explanation
Indices: 984444--984529 Score: 122
Period size: 44 Copynumber: 2.0 Consensus size: 44
984434 TCGGGATAAT
* *
984444 TATGTGGTCC-TTCGGGACAAA-TATGTGGCACTTCGTTGTAAACC
1 TATGTGGTCCATT-AGGA-AAATTATGTGGCACTTCGGTGTAAACC
984488 TATGTGGTCCATTAGGAAAATTATGTGGCACTTCGGTGTAAA
1 TATGTGGTCCATTAGGAAAATTATGTGGCACTTCGGTGTAAA
984530 TTACGAGCTG
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
43 3 0.08
44 33 0.87
45 2 0.05
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.33
Consensus pattern (44 bp):
TATGTGGTCCATTAGGAAAATTATGTGGCACTTCGGTGTAAACC
Found at i:985910 original size:23 final size:23
Alignment explanation
Indices: 985884--985928 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
985874 CACCACAGCT
*
985884 CGTATAAATGCACCGAAGTGCCC
1 CGTAGAAATGCACCGAAGTGCCC
* *
985907 CGTAGAATTGCACCGTAGTGCC
1 CGTAGAAATGCACCGAAGTGCC
985929 ATATAATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.20
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCC
Found at i:986177 original size:149 final size:149
Alignment explanation
Indices: 985907--986210 Score: 572
Period size: 149 Copynumber: 2.0 Consensus size: 149
985897 CGAAGTGCCC
985907 CGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAATTCCTTAAGAAT
1 CGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAATTCCTTAAGAAT
* * *
985972 CATATACATATGCTATGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTTCCAAAGGATATA
66 CATATACATATACTAGGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTTCCAAAGAATATA
*
986037 CATATGTCCTAAAGAACCG
131 CATATGTCCCAAAGAACCG
986056 CGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAATTCCTTAAGAAT
1 CGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAATTCCTTAAGAAT
986121 CATATACATATACTAGGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTTCCAAAGAATATA
66 CATATACATATACTAGGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTTCCAAAGAATATA
986186 CATATGTCCCAAAGAACCG
131 CATATGTCCCAAAGAACCG
986205 CGTAGA
1 CGTAGA
986211 CCCTCTACCC
Statistics
Matches: 151, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
149 151 1.00
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (149 bp):
CGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAATTCCTTAAGAAT
CATATACATATACTAGGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTTCCAAAGAATATA
CATATGTCCCAAAGAACCG
Found at i:992877 original size:23 final size:23
Alignment explanation
Indices: 992851--992895 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
992841 CACCACAGCT
*
992851 CGTATAAATGCACCGAAGTGCCC
1 CGTAGAAATGCACCGAAGTGCCC
* *
992874 CGTAGAATTGCACCGTAGTGCC
1 CGTAGAAATGCACCGAAGTGCC
992896 ATATAATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.20
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCC
Found at i:993144 original size:149 final size:149
Alignment explanation
Indices: 992874--993177 Score: 572
Period size: 149 Copynumber: 2.0 Consensus size: 149
992864 CGAAGTGCCC
992874 CGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAATTCCTTAAGAAT
1 CGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAATTCCTTAAGAAT
* * *
992939 CATATACATATGCTATGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTTCCAAAGGATATA
66 CATATACATATACTAGGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTTCCAAAGAATATA
*
993004 CATATGTCCTAAAGAACCG
131 CATATGTCCCAAAGAACCG
993023 CGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAATTCCTTAAGAAT
1 CGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAATTCCTTAAGAAT
993088 CATATACATATACTAGGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTTCCAAAGAATATA
66 CATATACATATACTAGGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTTCCAAAGAATATA
993153 CATATGTCCCAAAGAACCG
131 CATATGTCCCAAAGAACCG
993172 CGTAGA
1 CGTAGA
993178 CCCTCTACCC
Statistics
Matches: 151, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
149 151 1.00
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (149 bp):
CGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAATTCCTTAAGAAT
CATATACATATACTAGGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTTCCAAAGAATATA
CATATGTCCCAAAGAACCG
Found at i:995245 original size:16 final size:17
Alignment explanation
Indices: 995224--995268 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 17
995214 TTTTATTTGA
995224 TTATTTAATTGTAA-AT
1 TTATTTAATTGTAATAT
*
995240 TTATTT-AGT-TAATAT
1 TTATTTAATTGTAATAT
995255 TTA-TTAATTGTAAT
1 TTATTTAATTGTAAT
995269 TAAAAAATGG
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
14 5 0.21
15 9 0.38
16 10 0.42
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.58
Consensus pattern (17 bp):
TTATTTAATTGTAATAT
Found at i:997490 original size:29 final size:26
Alignment explanation
Indices: 997434--997486 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
997424 CAAAGAGACA
*
997434 TCGATGGATCTAAAAAAATTATAATC
1 TCGATAGATCTAAAAAAATTATAATC
* *
997460 TCGATAGATCTAATAAAATTGTAATC
1 TCGATAGATCTAAAAAAATTATAATC
997486 T
1 T
997487 TCTCATTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.34
Consensus pattern (26 bp):
TCGATAGATCTAAAAAAATTATAATC
Found at i:998974 original size:36 final size:36
Alignment explanation
Indices: 998927--998998 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
998917 CAATGCAACA
998927 AGGTAATGTCAGTACTATATTTGAAAATACTAAAAT
1 AGGTAATGTCAGTACTATATTTGAAAATACTAAAAT
998963 AGGTAATGTCAGTACTATATTTGAAAATACTAAAAT
1 AGGTAATGTCAGTACTATATTTGAAAATACTAAAAT
998999 CATAGAATGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.44, C:0.08, G:0.14, T:0.33
Consensus pattern (36 bp):
AGGTAATGTCAGTACTATATTTGAAAATACTAAAAT
Found at i:1007454 original size:23 final size:23
Alignment explanation
Indices: 1007428--1007477 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
1007418 TACATTTTGC
* *
1007428 AAGAATGATAGATTCTCTTTTCA
1 AAGAATGATAGATTATATTTTCA
*
1007451 AAG-ATGATCGATTATATTTTCA
1 AAGAATGATAGATTATATTTTCA
1007473 AAGAA
1 AAGAA
1007478 CAAAAGCTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 19 0.83
23 4 0.17
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.36
Consensus pattern (23 bp):
AAGAATGATAGATTATATTTTCA
Found at i:1008226 original size:83 final size:83
Alignment explanation
Indices: 1007993--1008240 Score: 320
Period size: 82 Copynumber: 3.0 Consensus size: 83
1007983 CAAGAACAAG
* * *
1007993 AGCAAAATCAAAATTCAGTCTCCACGAAAGAGTAGTTAAACGGATTTTTCAGCAAAGTATGAAAT
1 AGCAAAAAC-AAATTCAGACTCCACGAAAGAGTAGTGAAACGGATTTTTCAGCAAAGTATGAAAT
*
1008058 CTTCACGGAAGAGTAGTTA
65 CTTCACGGAAGAGTAGTGA
* * * * *
1008077 AGTAAAAACAAATTCAGCCTCAACG-AAGAGTAGTGAAATGGATTTTTCAGCAAAGTATAAAATC
1 AGCAAAAACAAATTCAGACTCCACGAAAGAGTAGTGAAACGGATTTTTCAGCAAAGTATGAAATC
1008141 TTCACGGAAGAGTAGTGA
66 TTCACGGAAGAGTAGTGA
* * * * * *
1008159 AGCAAGAGCAAA-TCTGAACTCCACGAAAGAATAGTGGAACGGATTTTTCAGAAAAGTATGAAAT
1 AGCAAAAACAAATTCAG-ACTCCACGAAAGAGTAGTGAAACGGATTTTTCAGCAAAGTATGAAAT
*
1008223 CTTCACAGAAGAGTAGTG
65 CTTCACGGAAGAGTAGTG
1008241 GAGTAATCCA
Statistics
Matches: 142, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
81 3 0.02
82 68 0.48
83 64 0.45
84 7 0.05
ACGTcount: A:0.42, C:0.15, G:0.21, T:0.23
Consensus pattern (83 bp):
AGCAAAAACAAATTCAGACTCCACGAAAGAGTAGTGAAACGGATTTTTCAGCAAAGTATGAAATC
TTCACGGAAGAGTAGTGA
Found at i:1011229 original size:41 final size:42
Alignment explanation
Indices: 1011162--1011240 Score: 124
Period size: 41 Copynumber: 1.9 Consensus size: 42
1011152 CTAAATAAAT
* * *
1011162 GCATGCGAACTAGAAATCATGCGGTTAGGTTATTTTTCCAAA
1 GCATGCGAACTAGAAAGCATGAGGTTAGGATATTTTTCCAAA
1011204 GCATG-GAACTAGAAAGCATGAGGTTAGGATATTTTTC
1 GCATGCGAACTAGAAAGCATGAGGTTAGGATATTTTTC
1011241 TTGCTACCAA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
41 29 0.85
42 5 0.15
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.30
Consensus pattern (42 bp):
GCATGCGAACTAGAAAGCATGAGGTTAGGATATTTTTCCAAA
Found at i:1014052 original size:16 final size:16
Alignment explanation
Indices: 1014031--1014081 Score: 84
Period size: 16 Copynumber: 3.2 Consensus size: 16
1014021 CTCTGATGAG
*
1014031 GGAATTTAAAGAGAAT
1 GGAATTTAGAGAGAAT
*
1014047 GGAATTTAGAGAGAAG
1 GGAATTTAGAGAGAAT
1014063 GGAATTTAGAGAGAAT
1 GGAATTTAGAGAGAAT
1014079 GGA
1 GGA
1014082 GCTTCTCTCT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.45, C:0.00, G:0.33, T:0.22
Consensus pattern (16 bp):
GGAATTTAGAGAGAAT
Found at i:1016736 original size:42 final size:42
Alignment explanation
Indices: 1016665--1016744 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
1016655 TGTATCGATA
* *
1016665 ATAGGAGTATCGATACCAGTGGTGAGGTATCGGTACCATAGT
1 ATAGGAGTATCGATACCAGTGGTAAGGTATCGATACCATAGT
* *
1016707 ATAGTAGTATCGATACCA-TGTTAAGGGTATCGATACCA
1 ATAGGAGTATCGATACCAGTGGTAA-GGTATCGATACCA
1016745 GGCAACATCG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 4 0.12
42 29 0.88
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (42 bp):
ATAGGAGTATCGATACCAGTGGTAAGGTATCGATACCATAGT
Found at i:1020187 original size:2 final size:2
Alignment explanation
Indices: 1020180--1020286 Score: 102
Period size: 2 Copynumber: 57.0 Consensus size: 2
1020170 TAATTATTAT
1020180 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
1020222 TA AA T- TA -A TA AA T- TA AA T- TA TA -A T- TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * *
1020258 TA TA TT TA TA TT TA -A TT TA AA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1020287 CCCGGCCCGA
Statistics
Matches: 84, Mismatches: 14, Indels: 14
0.75 0.12 0.12
Matches are distributed among these distances:
1 7 0.08
2 77 0.92
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1025656 original size:44 final size:44
Alignment explanation
Indices: 1025457--1025744 Score: 211
Period size: 43 Copynumber: 6.7 Consensus size: 44
1025447 ATGAAATTAT
* * *
1025457 AAAAAA-TTAGAGGCCTTAATTATAAAGGTAGAAATCGAGATCG
1 AAAAAACTTAGGGGCCTCAATTATAAAGGTAGAAATTGAGATCG
* * * ***
1025500 AAAAAA--TAGGAGCCAT-AATTATTAAGGTA-TAATTGAGAGAA
1 AAAAAACTTAGGGGCC-TCAATTATAAAGGTAGAAATTGAGATCG
* * * * *
1025541 AAAAAACTTAGGGGCCTCAATTATAAAGTTGAAAAAGTGGGAT-T
1 AAAAAACTTAGGGGCCTCAATTATAAAGGT-AGAAATTGAGATCG
**
1025585 AAAAAA-TTAGGGGCCTCAACGATAAAGGTAGAAATTGAGATCG
1 AAAAAACTTAGGGGCCTCAATTATAAAGGTAGAAATTGAGATCG
* * *
1025628 AAAAAACTTAGGGGCCCCAATTGA-AAAGGTAGAAAGTGAGATTG
1 AAAAAACTTAGGGGCCTCAATT-ATAAAGGTAGAAATTGAGATCG
*** * * * * *
1025672 AAAAAAACTTAAAAGCCTCGATTATAAAGTTA-AAAGTGGGAT-T
1 -AAAAAACTTAGGGGCCTCAATTATAAAGGTAGAAATTGAGATCG
*
1025715 ACAAAA-TTAGGGGCCTCAATTATAAAGGTA
1 AAAAAACTTAGGGGCCTCAATTATAAAGGTA
1025745 AAAAAAGGAT
Statistics
Matches: 192, Mismatches: 42, Indels: 24
0.74 0.16 0.09
Matches are distributed among these distances:
41 32 0.17
42 33 0.17
43 50 0.26
44 47 0.24
45 30 0.16
ACGTcount: A:0.46, C:0.10, G:0.22, T:0.23
Consensus pattern (44 bp):
AAAAAACTTAGGGGCCTCAATTATAAAGGTAGAAATTGAGATCG
Found at i:1025724 original size:130 final size:127
Alignment explanation
Indices: 1025456--1025744 Score: 350
Period size: 130 Copynumber: 2.2 Consensus size: 127
1025446 TATGAAATTA
* * *
1025456 TAAAAAATTAGAGGCCTTAATTATAAAGGTAGAAATCGAGATCGAAAAAATAGGAGCCATAATTA
1 TAAAAAATTAGGGGCCTCAATTATAAAGGTAGAAATCGAGATCGAAAAAATAGGAGCCACAATTA
* * * ***
1025521 TTAAGGTATAATTGAGAGAAAAAAAACTTAGGGGCCTCAATTATAAAGTTGAAAAAGTGGGAT
66 TAAAGGTAAAAGTGAGAGAAAAAAAACTTAAAAGCCTCAATTATAAAGTT-AAAAAGTGGGAT
** * * *
1025584 TAAAAAATTAGGGGCCTCAACGATAAAGGTAGAAATTGAGATCGAAAAAACTTAGGGGCCCCAAT
1 TAAAAAATTAGGGGCCTCAATTATAAAGGTAGAAATCGAGATCGAAAAAA--TAGGAGCCACAAT
*
1025649 TGA-AAAGGTAGAAAGTGAGATTG-AAAAAAACTTAAAAGCCTCGATTATAAAGTT-AAAAGTGG
64 T-ATAAAGGTA-AAAGTGAGA--GAAAAAAAACTTAAAAGCCTCAATTATAAAGTTAAAAAGTGG
1025711 GAT
125 GAT
*
1025714 TACAAAATTAGGGGCCTCAATTATAAAGGTA
1 TAAAAAATTAGGGGCCTCAATTATAAAGGTA
1025745 AAAAAAGGAT
Statistics
Matches: 137, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
128 45 0.33
130 56 0.41
131 8 0.06
132 27 0.20
133 1 0.01
ACGTcount: A:0.46, C:0.10, G:0.22, T:0.23
Consensus pattern (127 bp):
TAAAAAATTAGGGGCCTCAATTATAAAGGTAGAAATCGAGATCGAAAAAATAGGAGCCACAATTA
TAAAGGTAAAAGTGAGAGAAAAAAAACTTAAAAGCCTCAATTATAAAGTTAAAAAGTGGGAT
Found at i:1025782 original size:42 final size:43
Alignment explanation
Indices: 1025730--1025834 Score: 117
Period size: 42 Copynumber: 2.5 Consensus size: 43
1025720 ATTAGGGGCC
* * *
1025730 TCAATTATAAAGGTAAAAAAAG-GATTGAA-AAGCTTTGAGACT
1 TCAATTATAAAGGTAAAAAAAGAGATTGAATAAGATTAGA-ACA
* ** *
1025772 TCAATTATAAAGAT-AAAAGTGAGATTGAATAATATTAGAACA
1 TCAATTATAAAGGTAAAAAAAGAGATTGAATAAGATTAGAACA
1025814 TCAATTATAAAGGTAAAAAAA
1 TCAATTATAAAGGTAAAAAAA
1025835 ATAAGAATTA
Statistics
Matches: 50, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
41 5 0.10
42 35 0.70
43 10 0.20
ACGTcount: A:0.52, C:0.06, G:0.15, T:0.27
Consensus pattern (43 bp):
TCAATTATAAAGGTAAAAAAAGAGATTGAATAAGATTAGAACA
Found at i:1032871 original size:31 final size:31
Alignment explanation
Indices: 1032773--1032877 Score: 83
Period size: 31 Copynumber: 3.4 Consensus size: 31
1032763 GGGCTCGAGA
* * *
1032773 GCCTACC-CAAGAAAGTTACTCGAGGCCACGGG
1 GCCTACCTCAAGAAGGAT-CTCGGGGCCAC-GG
*
1032805 GCCTA-CTCAAGAAGGATCTCGGGGCCACATG
1 GCCTACCTCAAGAAGGATCTCGGGGCCAC-GG
* * *
1032836 GCCTACCTTAA-AATGATCTTGGGGCCACGG
1 GCCTACCTCAAGAAGGATCTCGGGGCCACGG
1032866 AGCCTACC-CAAG
1 -GCCTACCTCAAG
1032878 GGCCACCTTA
Statistics
Matches: 59, Mismatches: 10, Indels: 9
0.76 0.13 0.12
Matches are distributed among these distances:
30 3 0.05
31 39 0.66
32 17 0.29
ACGTcount: A:0.27, C:0.30, G:0.27, T:0.16
Consensus pattern (31 bp):
GCCTACCTCAAGAAGGATCTCGGGGCCACGG
Found at i:1033839 original size:20 final size:20
Alignment explanation
Indices: 1033814--1033859 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
1033804 GTGATACCTC
1033814 ATTACTATTATTCACTTCTT
1 ATTACTATTATTCACTTCTT
1033834 ATTACTATTATTCACTTCTT
1 ATTACTATTATTCACTTCTT
1033854 ATTACT
1 ATTACT
1033860 GACTGCACCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.26, C:0.20, G:0.00, T:0.54
Consensus pattern (20 bp):
ATTACTATTATTCACTTCTT
Found at i:1048542 original size:4 final size:4
Alignment explanation
Indices: 1048529--1048589 Score: 56
Period size: 4 Copynumber: 15.8 Consensus size: 4
1048519 AAAAACATAA
* * *
1048529 AAAG AGAG AAAG -AAG AAAA AAAG AAA- AAAG AAAG AAAAA AAAG AAAG
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG -AAAG AAAG AAAG
*
1048576 AAAG -ATG AAAG AAA
1 AAAG AAAG AAAG AAA
1048590 ACATATCAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
3 8 0.18
4 34 0.76
5 3 0.07
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.02
Consensus pattern (4 bp):
AAAG
Found at i:1048544 original size:11 final size:11
Alignment explanation
Indices: 1048530--1048580 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
1048520 AAAACATAAA
*
1048530 AAGAGAGAAAG
1 AAGAAAGAAAG
*
1048541 AAGAAAAAAAG
1 AAGAAAGAAAG
*
1048552 AAAAAAGAAAG
1 AAGAAAGAAAG
1048563 AA-AAA-AAAG
1 AAGAAAGAAAG
1048572 AAAGAAAGA
1 -AAGAAAGA
1048581 TGAAAGAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
9 4 0.12
10 5 0.15
11 23 0.70
12 1 0.03
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (11 bp):
AAGAAAGAAAG
Found at i:1048570 original size:13 final size:13
Alignment explanation
Indices: 1048552--1048578 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1048542 AGAAAAAAAG
1048552 AAAAAAGAAAGAA
1 AAAAAAGAAAGAA
1048565 AAAAAAGAAAGAA
1 AAAAAAGAAAGAA
1048578 A
1 A
1048579 GATGAAAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (13 bp):
AAAAAAGAAAGAA
Found at i:1050615 original size:54 final size:54
Alignment explanation
Indices: 1050526--1050745 Score: 248
Period size: 54 Copynumber: 4.1 Consensus size: 54
1050516 TTTCTTGTTA
* *
1050526 TGATGTTTTCAAACGAA-TTTGAAAGAAGCTAAGCCTGATTTTCAGGGGTTTCT
1 TGATGTTTTCAAAAGAATTTTGAAAGAAGCTAAGCCTAATTTTCAGGGGTTTCT
*
1050579 TGATGTTTTCAAAAGAATTTTGAAAGAAGCTAAGCCTAATTTTTAGGGGTTTCT
1 TGATGTTTTCAAAAGAATTTTGAAAGAAGCTAAGCCTAATTTTCAGGGGTTTCT
* * * *
1050633 TGATGTTTTCAAAATGAGTTTT--TAGAAACTAAGCCTGATTTTCAGGGGTTTCT
1 TGATGTTTTCAAAA-GAATTTTGAAAGAAGCTAAGCCTAATTTTCAGGGGTTTCT
* * * * * * **
1050686 TAATGATTATTTCCAAAGAATTTTTAAAAAAGCTAATCCTAATTTTTAAAGGTTTCT
1 TGATG--T-TTTCAAAAGAATTTTGAAAGAAGCTAAGCCTAATTTTCAGGGGTTTCT
1050743 TGA
1 TGA
1050746 CGATAAACGT
Statistics
Matches: 140, Mismatches: 20, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
53 47 0.34
54 48 0.34
55 13 0.09
56 7 0.05
57 25 0.18
ACGTcount: A:0.31, C:0.11, G:0.18, T:0.40
Consensus pattern (54 bp):
TGATGTTTTCAAAAGAATTTTGAAAGAAGCTAAGCCTAATTTTCAGGGGTTTCT
Found at i:1050686 original size:53 final size:53
Alignment explanation
Indices: 1050526--1050745 Score: 244
Period size: 53 Copynumber: 4.1 Consensus size: 53
1050516 TTTCTTGTTA
* *
1050526 TGATGTTTTCAAACGAATTTGAAAGAAGCTAAGCCTGATTTTCAGGGGTTTCT
1 TGATGTTTTCAAAAGAATTTTAAAGAAGCTAAGCCTGATTTTCAGGGGTTTCT
* *
1050579 TGATGTTTTCAAAAGAATTTTGAAAGAAGCTAAGCCTAATTTTTAGGGGTTTCT
1 TGATGTTTTCAAAAGAATTTT-AAAGAAGCTAAGCCTGATTTTCAGGGGTTTCT
* * *
1050633 TGATGTTTTCAAAATGAGTTTT-TAGAAACTAAGCCTGATTTTCAGGGGTTTCT
1 TGATGTTTTCAAAA-GAATTTTAAAGAAGCTAAGCCTGATTTTCAGGGGTTTCT
* * * * * * **
1050686 TAATGATTATTTCCAAAGAATTTTTAAAAAAGCTAATCCTAATTTTTAAAGGTTTCT
1 TGATG--T-TTTCAAAAGAA-TTTTAAAGAAGCTAAGCCTGATTTTCAGGGGTTTCT
1050743 TGA
1 TGA
1050746 CGATAAACGT
Statistics
Matches: 139, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
53 50 0.36
54 44 0.32
55 9 0.06
56 11 0.08
57 25 0.18
ACGTcount: A:0.31, C:0.11, G:0.18, T:0.40
Consensus pattern (53 bp):
TGATGTTTTCAAAAGAATTTTAAAGAAGCTAAGCCTGATTTTCAGGGGTTTCT
Found at i:1050875 original size:42 final size:42
Alignment explanation
Indices: 1050810--1050931 Score: 133
Period size: 42 Copynumber: 2.9 Consensus size: 42
1050800 TGATTAGAAA
*
1050810 AAATCCTTCGGGCCATTAGTAAGTCTTTCGAGCATGATGCTT
1 AAATCCTTCGGGCCATTAGTAAGTCTTTCGAGCAAGATGCTT
* *
1050852 AAATCCTTCGGGTCATATA-TAAGTCTTTCGAGCAAGATG-AT
1 AAATCCTTCGGGCCAT-TAGTAAGTCTTTCGAGCAAGATGCTT
* * * * *
1050893 AAGTCATTCGGGCCATTCA-TAAGACCTTCGAGCAGGATG
1 AAATCCTTCGGGCCATT-AGTAAGTCTTTCGAGCAAGATG
1050932 TTTTCACATT
Statistics
Matches: 69, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
40 1 0.01
41 32 0.46
42 34 0.49
43 2 0.03
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (42 bp):
AAATCCTTCGGGCCATTAGTAAGTCTTTCGAGCAAGATGCTT
Found at i:1052003 original size:136 final size:136
Alignment explanation
Indices: 1051758--1052513 Score: 860
Period size: 136 Copynumber: 5.5 Consensus size: 136
1051748 ACCGATTAAG
* * *
1051758 ATTTCCAATGGATAGTTCATAATGAGAAGAACTCATCCGACCGAGGGAGAGGAAGTTCATAATGA
1 ATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAATGA
* * * ** * *** * ** *
1051823 GAAGAGCTTGTTCGATCTATCGCTAAATTAATGTCATTTTGAATCAGTGACGCCTCGCTTAAGGG
66 GAAGAACTTGTTCGACCTATTGCTCGATTCACAACACTTTGAATCAGCAACGCCTCGCTTGAGGG
*
1051888 ATTAAC
131 ATTGAC
* ** *
1051894 CTTTAAAATGGAGAGTTCATAATGAGAAGAACTCA-CCAGACAGAGGGAGAAGAAGTTTATAATG
1 ATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCC-GACAGAGGGAGAAGAAGTTCATAATG
* * *
1051958 AGAAGAACTTGTTCGACCTATTGCTCGATTCACAACACTTCGAATCAGTAACGCCACGCTTGAGG
65 AGAAGAACTTGTTCGACCTATTGCTCGATTCACAACACTTTGAATCAGCAACGCCTCGCTTGAGG
1052023 GATTGAC
130 GATTGAC
* * * * * *
1052030 ATTTCCAATAGATAGTCCATATTGAGAAGAACTCGTCCGACAAAGGGAGAAGAAGTTCATAATGA
1 ATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAATGA
* * * *
1052095 AAAGAACTTGTTCGACCTATTGCTTGATTCACAACACTTCGAATCAACAACGCCTCGCTTGAGGG
66 GAAGAACTTGTTCGACCTATTGCTCGATTCACAACACTTTGAATCAGCAACGCCTCGCTTGAGGG
1052160 ATTGAC
131 ATTGAC
* * *
1052166 ATTTCCAATGGAGAGTTCATTATGAGAAGAACTCATCCGACAGAGGGAAAAGAAGTTTATAATGA
1 ATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAATGA
* * * * *
1052231 GAAGAACTTGTTCGGCCTATTGTTCGATTCACAACATTTTGAATCAGAAACACCTCGCTTGAGGG
66 GAAGAACTTGTTCGACCTATTGCTCGATTCACAACACTTTGAATCAGCAACGCCTCGCTTGAGGG
*
1052296 ATTGAT
131 ATTGAC
* ***
1052302 ATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGATAGAGGGAGGCTAAGTTCATAATGA
1 ATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAATGA
* * * * *
1052367 GAAGAACTTGTTCTA-C-ATTGGCTCGATTCATC-ACATATGGAGTTGAATCACCAACACCTCAC
66 GAAGAACTTGTTCGACCTATT-GCTCGATTCA-CAACA-CT----TTGAATCAGCAACGCCTCGC
* *
1052429 TCGAGGGATTAAC
124 TTGAGGGATTGAC
* * * *
1052442 ATTTACAATGGAGAGTTCATAATGAGAAGAACTCATTC-AAAGAGGGAGAAGAAG-ACA-AGATG
1 ATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATA-ATG
1052504 AGAAGAACTT
65 AGAAGAACTT
1052514 ATGGTCTAAG
Statistics
Matches: 530, Mismatches: 80, Indels: 18
0.84 0.13 0.03
Matches are distributed among these distances:
134 3 0.01
135 15 0.03
136 419 0.79
137 3 0.01
138 15 0.03
139 12 0.02
140 63 0.12
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.25
Consensus pattern (136 bp):
ATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAATGA
GAAGAACTTGTTCGACCTATTGCTCGATTCACAACACTTTGAATCAGCAACGCCTCGCTTGAGGG
ATTGAC
Found at i:1064193 original size:23 final size:22
Alignment explanation
Indices: 1064134--1064193 Score: 111
Period size: 22 Copynumber: 2.7 Consensus size: 22
1064124 TGGAAAAAAA
1064134 TGGTCAATGAAATTCATTTTCC
1 TGGTCAATGAAATTCATTTTCC
1064156 TGGTCAATGAAATTCATTTTCC
1 TGGTCAATGAAATTCATTTTCC
1064178 TGGTCAACTGAAATTC
1 TGGTCAA-TGAAATTC
1064194 CATACATTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 29 0.78
23 8 0.22
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.38
Consensus pattern (22 bp):
TGGTCAATGAAATTCATTTTCC
Found at i:1064557 original size:23 final size:23
Alignment explanation
Indices: 1064515--1064627 Score: 62
Period size: 23 Copynumber: 5.1 Consensus size: 23
1064505 ATAATATTGT
1064515 TATTTT-ATATATATT-T-TTTAA
1 TATTTTAATA-ATATTATATTTAA
1064536 TATTTTAATAATATTATATTTAA
1 TATTTTAATAATATTATATTTAA
** * * *
1064559 TAAGTAAATAATATAATA-AT-A
1 TATTTTAATAATATTATATTTAA
* *
1064580 TATTTTATTTAATA--ATAATTAA
1 TATTTTA-ATAATATTATATTTAA
*
1064602 TATAATTTAATAATTTTAT-TTTAA
1 TAT--TTTAATAATATTATATTTAA
1064626 TA
1 TA
1064628 AATTATAATA
Statistics
Matches: 69, Mismatches: 13, Indels: 17
0.70 0.13 0.17
Matches are distributed among these distances:
20 3 0.04
21 17 0.25
22 14 0.20
23 23 0.33
24 10 0.14
25 2 0.03
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (23 bp):
TATTTTAATAATATTATATTTAA
Found at i:1064617 original size:28 final size:26
Alignment explanation
Indices: 1064541--1064617 Score: 70
Period size: 28 Copynumber: 2.9 Consensus size: 26
1064531 TTTAATATTT
* * *
1064541 TAATAATATTATATTTAATAAGTAAA
1 TAATAATAATATATTTAATAATTTAA
1064567 TAATATAATAATATATTT--T-ATTTAA
1 T-A-ATAATAATATATTTAATAATTTAA
1064592 TAATAATTAATATAATTTAATAATTT
1 TAATAA-TAATAT-ATTTAATAATTT
1064618 TATTTTAATA
Statistics
Matches: 41, Mismatches: 3, Indels: 12
0.73 0.05 0.21
Matches are distributed among these distances:
23 4 0.10
24 7 0.17
25 9 0.22
26 2 0.05
27 2 0.05
28 17 0.41
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (26 bp):
TAATAATAATATATTTAATAATTTAA
Found at i:1064625 original size:24 final size:24
Alignment explanation
Indices: 1064598--1064644 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
1064588 TTAATAATAA
*
1064598 TTAATATAATT-TAATAATTTTATT
1 TTAATA-AATTATAATAATCTTATT
1064622 TTAATAAATTATAATAATCTTAT
1 TTAATAAATTATAATAATCTTAT
1064645 GTTTTTATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 4 0.19
24 17 0.81
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (24 bp):
TTAATAAATTATAATAATCTTATT
Found at i:1064737 original size:23 final size:21
Alignment explanation
Indices: 1064695--1064738 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 21
1064685 TACTTAAATA
*
1064695 TTAAATAATTATTATAATATT
1 TTAAATAATTATAATAATATT
1064716 TTAAATATATTATAAATAATATT
1 TTAAATA-ATTAT-AATAATATT
1064739 ATTCATTCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 7 0.35
22 5 0.25
23 8 0.40
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
TTAAATAATTATAATAATATT
Found at i:1064739 original size:12 final size:12
Alignment explanation
Indices: 1064708--1064740 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
1064698 AATAATTATT
*
1064708 ATAATATTTTAA
1 ATAATATTATAA
1064720 AT-ATATTATAA
1 ATAATATTATAA
1064731 ATAATATTAT
1 ATAATATTAT
1064741 TCATTCTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
ATAATATTATAA
Found at i:1069038 original size:2 final size:2
Alignment explanation
Indices: 1069031--1069070 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
1069021 AATATTTTTA
1069031 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1069071 TAAATGGCCC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1070239 original size:20 final size:20
Alignment explanation
Indices: 1070211--1070248 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
1070201 GGTAAAAAGC
*
1070211 TACCTAAAACATTATTTTTT
1 TACCAAAAACATTATTTTTT
*
1070231 TACCAAAAATATTATTTT
1 TACCAAAAACATTATTTT
1070249 CGCTAACTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.13, G:0.00, T:0.47
Consensus pattern (20 bp):
TACCAAAAACATTATTTTTT
Found at i:1082320 original size:22 final size:20
Alignment explanation
Indices: 1082274--1082321 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
1082264 ACTATTCTTC
1082274 TTCTCTCTAACTTTATAAAA
1 TTCTCTCTAACTTTATAAAA
* *
1082294 TTCTCTCTAGCTTTATGAAA
1 TTCTCTCTAACTTTATAAAA
1082314 TTCTCTCT
1 TTCTCTCT
1082322 TTTATTTTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.04, T:0.48
Consensus pattern (20 bp):
TTCTCTCTAACTTTATAAAA
Found at i:1094335 original size:24 final size:24
Alignment explanation
Indices: 1094303--1094348 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
1094293 AGTCTTCCTT
1094303 ATGATGTATAAAACATCTATGTAC
1 ATGATGTATAAAACATCTATGTAC
1094327 ATGATGTATAAAACATCTATGT
1 ATGATGTATAAAACATCTATGT
1094349 TCCATGTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.41, C:0.11, G:0.13, T:0.35
Consensus pattern (24 bp):
ATGATGTATAAAACATCTATGTAC
Found at i:1101870 original size:65 final size:64
Alignment explanation
Indices: 1101735--1101936 Score: 209
Period size: 65 Copynumber: 3.1 Consensus size: 64
1101725 TTTTTCAAAG
* *
1101735 TGATGCACCGATGC-CCAATCCATGCATCGATGCAC-CATGA-ATTAAATTG-AACATCGAATGC
1 TGATGCATCGATGCACCAA-CCATGCATCGATGCACTCAGGATATT---TTGAAACATCGAATGC
1101796 ATT
62 ATT
* * *
1101799 TCATGCATCGATGCA-CATACCATGCATCGATGCATTGAGGAT-TTTATGAAAACATCGAATGCA
1 TGATGCATCGATGCACCA-ACCATGCATCGATGCACTCAGGATATTT-TG-AAACATCGAATGCA
1101862 TT
63 TT
* * * * *
1101864 TGATGCATCGATGCACCAGCCATGCATCGATGCACTCTGGCTATTTTGAAACATCGAATGTACT
1 TGATGCATCGATGCACCAACCATGCATCGATGCACTCAGGATATTTTGAAACATCGAATGCATT
1101928 TGATGCATC
1 TGATGCATC
1101937 AATACACTCT
Statistics
Matches: 116, Mismatches: 13, Indels: 18
0.79 0.09 0.12
Matches are distributed among these distances:
62 1 0.01
63 2 0.02
64 52 0.45
65 56 0.48
66 5 0.04
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (64 bp):
TGATGCATCGATGCACCAACCATGCATCGATGCACTCAGGATATTTTGAAACATCGAATGCATT
Found at i:1105088 original size:22 final size:22
Alignment explanation
Indices: 1105059--1105202 Score: 198
Period size: 22 Copynumber: 6.5 Consensus size: 22
1105049 GGGTATATTA
*
1105059 GTCCTTCGGGACGTATCTAGTG
1 GTCCTTCGGGACGTATCCAGTG
* *
1105081 GTCATTCGGGATGTATCCAGTG
1 GTCCTTCGGGACGTATCCAGTG
* *
1105103 GTCCTTTGGGACGTATCCAGTA
1 GTCCTTCGGGACGTATCCAGTG
* *
1105125 GTCCTTCGGGATGTATCTAGTG
1 GTCCTTCGGGACGTATCCAGTG
*
1105147 GTCCTTCGGGACATATCCAGTG
1 GTCCTTCGGGACGTATCCAGTG
* *
1105169 GTCCTTCGGAACGTATCTAGTG
1 GTCCTTCGGGACGTATCCAGTG
1105191 GTCCTTCGGGAC
1 GTCCTTCGGGAC
1105203 ATAATAGTCC
Statistics
Matches: 104, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 104 1.00
ACGTcount: A:0.16, C:0.23, G:0.30, T:0.31
Consensus pattern (22 bp):
GTCCTTCGGGACGTATCCAGTG
Found at i:1105164 original size:66 final size:66
Alignment explanation
Indices: 1105057--1105202 Score: 220
Period size: 66 Copynumber: 2.2 Consensus size: 66
1105047 GAGGGTATAT
** * *
1105057 TAGTCCTTCGGGACGTATCTAGTGGTCATTCGGGATGTATCCAGTGGTCCTTTGGGACGTATCCA
1 TAGTCCTTCGGGACGTATCTAGTGGTCATTCGGGACATATCCAGTGGTCCTTCGGAACGTATCCA
1105122 G
66 G
* * *
1105123 TAGTCCTTCGGGATGTATCTAGTGGTCCTTCGGGACATATCCAGTGGTCCTTCGGAACGTATCTA
1 TAGTCCTTCGGGACGTATCTAGTGGTCATTCGGGACATATCCAGTGGTCCTTCGGAACGTATCCA
1105188 G
66 G
*
1105189 TGGTCCTTCGGGAC
1 TAGTCCTTCGGGAC
1105203 ATAATAGTCC
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
66 71 1.00
ACGTcount: A:0.16, C:0.23, G:0.29, T:0.32
Consensus pattern (66 bp):
TAGTCCTTCGGGACGTATCTAGTGGTCATTCGGGACATATCCAGTGGTCCTTCGGAACGTATCCA
G
Found at i:1108809 original size:17 final size:19
Alignment explanation
Indices: 1108786--1108834 Score: 75
Period size: 17 Copynumber: 2.7 Consensus size: 19
1108776 ATGCCATGGA
1108786 TGCATCGATGCATAA-G-G
1 TGCATCGATGCATAAGGAG
*
1108803 TGTATCGATGCATAAGGAG
1 TGCATCGATGCATAAGGAG
1108822 TGCATCGATGCAT
1 TGCATCGATGCAT
1108835 CTGCTTAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 14 0.50
18 1 0.04
19 13 0.46
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.27
Consensus pattern (19 bp):
TGCATCGATGCATAAGGAG
Found at i:1110284 original size:13 final size:11
Alignment explanation
Indices: 1110243--1110327 Score: 66
Period size: 11 Copynumber: 7.2 Consensus size: 11
1110233 ACAATCTATC
1110243 CATCACCATTAT
1 CATCACCA-TAT
*
1110255 CA-CGCCTATAT
1 CATCACC-ATAT
1110266 CATCACCATAGT
1 CATCACCATA-T
1110278 CCATCACCATTAT
1 -CATCACCA-TAT
*
1110291 CA-CGCCTATAT
1 CATCACC-ATAT
1110302 CATCACCATATT
1 CATCACCATA-T
1110314 CCATCACCATAT
1 -CATCACCATAT
1110326 CA
1 CA
1110328 CGCCTATATT
Statistics
Matches: 60, Mismatches: 4, Indels: 19
0.72 0.05 0.23
Matches are distributed among these distances:
11 24 0.40
12 15 0.25
13 19 0.32
14 2 0.03
ACGTcount: A:0.32, C:0.36, G:0.04, T:0.28
Consensus pattern (11 bp):
CATCACCATAT
Found at i:1110288 original size:36 final size:36
Alignment explanation
Indices: 1110241--1110344 Score: 183
Period size: 36 Copynumber: 2.9 Consensus size: 36
1110231 ATACAATCTA
1110241 TCCATCACCATTATCACGCCTATATCATCACCATAG
1 TCCATCACCATTATCACGCCTATATCATCACCATAG
*
1110277 TCCATCACCATTATCACGCCTATATCATCACCATAT
1 TCCATCACCATTATCACGCCTATATCATCACCATAG
*
1110313 TCCATCACCA-TATCACGCCTATATTATCACCA
1 TCCATCACCATTATCACGCCTATATCATCACCA
1110345 ACTTATAAAT
Statistics
Matches: 66, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
35 21 0.32
36 45 0.68
ACGTcount: A:0.31, C:0.37, G:0.04, T:0.29
Consensus pattern (36 bp):
TCCATCACCATTATCACGCCTATATCATCACCATAG
Found at i:1114627 original size:13 final size:11
Alignment explanation
Indices: 1114588--1114669 Score: 55
Period size: 11 Copynumber: 7.2 Consensus size: 11
1114578 ACAATATGTC
1114588 CATCACCAT-T
1 CATCACCATAT
*
1114598 -ATCACGCCTAT
1 CATCAC-CATAT
1114609 -ATCACCATAGT
1 CATCACCATA-T
1114620 CCATCACCATTAT
1 -CATCACCA-TAT
*
1114633 CA-CGCCTATAT
1 CATCACC-ATAT
1114644 CATCACCATATT
1 CATCACCATA-T
1114656 CCATCACCATAT
1 -CATCACCATAT
1114668 CA
1 CA
1114670 CGCCTATATT
Statistics
Matches: 58, Mismatches: 4, Indels: 19
0.72 0.05 0.23
Matches are distributed among these distances:
9 5 0.09
10 5 0.09
11 20 0.34
12 8 0.14
13 18 0.31
14 2 0.03
ACGTcount: A:0.32, C:0.37, G:0.04, T:0.28
Consensus pattern (11 bp):
CATCACCATAT
Found at i:1114627 original size:33 final size:33
Alignment explanation
Indices: 1114585--1114678 Score: 145
Period size: 33 Copynumber: 2.8 Consensus size: 33
1114575 GATACAATAT
1114585 GTCCATCACCATTATCACGCCTATATCACCATA
1 GTCCATCACCATTATCACGCCTATATCACCATA
1114618 GTCCATCACCATTATCACGCCTATATCATCACCATA
1 GTCCATCACCATTATCACGCC--TAT-ATCACCATA
*
1114654 TTCCATCACCA-TATCACGCCTATAT
1 GTCCATCACCATTATCACGCCTATAT
1114679 TATCACCAAC
Statistics
Matches: 57, Mismatches: 1, Indels: 7
0.88 0.02 0.11
Matches are distributed among these distances:
32 2 0.04
33 24 0.42
35 12 0.21
36 19 0.33
ACGTcount: A:0.30, C:0.36, G:0.05, T:0.29
Consensus pattern (33 bp):
GTCCATCACCATTATCACGCCTATATCACCATA
Found at i:1114676 original size:35 final size:35
Alignment explanation
Indices: 1114581--1114686 Score: 155
Period size: 35 Copynumber: 3.0 Consensus size: 35
1114571 ATAAGATACA
1114581 ATATGTCCATCACCATTATCACGCC--TATATCACC
1 ATAT-TCCATCACCATTATCACGCCTATATATCACC
*
1114615 ATAGTCCATCACCATTATCACGCCTATATCATCACC
1 ATATTCCATCACCATTATCACGCCTATAT-ATCACC
1114651 ATATTCCATCACCA-TATCACGCCTATATTATCACC
1 ATATTCCATCACCATTATCACGCCTATA-TATCACC
1114686 A
1 A
1114687 ACTTATAAAT
Statistics
Matches: 66, Mismatches: 2, Indels: 7
0.88 0.03 0.09
Matches are distributed among these distances:
33 20 0.30
34 3 0.05
35 23 0.35
36 20 0.30
ACGTcount: A:0.31, C:0.35, G:0.05, T:0.29
Consensus pattern (35 bp):
ATATTCCATCACCATTATCACGCCTATATATCACC
Found at i:1119394 original size:2 final size:2
Alignment explanation
Indices: 1119387--1119423 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
1119377 CATGAGTTAG
1119387 AT AT AT AT -T AT AT AT AT AT AT AT A- AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1119424 GGAATTTATA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 2 0.06
2 31 0.94
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1119407 original size:15 final size:15
Alignment explanation
Indices: 1119387--1119423 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
1119377 CATGAGTTAG
*
1119387 ATATATATTATATAT
1 ATATATATAATATAT
1119402 ATATATATAATATAT
1 ATATATATAATATAT
1119417 ATATATA
1 ATATATA
1119424 GGAATTTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
ATATATATAATATAT
Found at i:1145195 original size:15 final size:14
Alignment explanation
Indices: 1145167--1145205 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 14
1145157 TTCCTTTGTC
1145167 ACTGTATT-AAGAA
1 ACTGTATTGAAGAA
1145180 ACTGTATATGAAGAA
1 ACTGTAT-TGAAGAA
*
1145195 AATGTATTGAA
1 ACTGTATTGAA
1145206 TTCACGTAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 7 0.30
14 5 0.22
15 11 0.48
ACGTcount: A:0.46, C:0.05, G:0.18, T:0.31
Consensus pattern (14 bp):
ACTGTATTGAAGAA
Found at i:1147779 original size:33 final size:33
Alignment explanation
Indices: 1147723--1147793 Score: 88
Period size: 33 Copynumber: 2.2 Consensus size: 33
1147713 TGGCCAATCT
* * *
1147723 CCATGTGCACGCGTTATTGCAACCGGCAAGGGC
1 CCATGTGCACGCATCATTGCAACCGGCAAGGCC
* * *
1147756 CCATGTGCATGCATCATTTCAACCGGTAAGGCC
1 CCATGTGCACGCATCATTGCAACCGGCAAGGCC
1147789 CCATG
1 CCATG
1147794 AGCGTTGTCG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.23, C:0.31, G:0.25, T:0.21
Consensus pattern (33 bp):
CCATGTGCACGCATCATTGCAACCGGCAAGGCC
Found at i:1156695 original size:30 final size:30
Alignment explanation
Indices: 1156659--1156729 Score: 142
Period size: 30 Copynumber: 2.4 Consensus size: 30
1156649 GTGTTTAGTA
1156659 AAGGTTGTTTGAAGGGCTCGAGGAGTCACT
1 AAGGTTGTTTGAAGGGCTCGAGGAGTCACT
1156689 AAGGTTGTTTGAAGGGCTCGAGGAGTCACT
1 AAGGTTGTTTGAAGGGCTCGAGGAGTCACT
1156719 AAGGTTGTTTG
1 AAGGTTGTTTG
1156730 GCTCGGATGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.23, C:0.11, G:0.37, T:0.30
Consensus pattern (30 bp):
AAGGTTGTTTGAAGGGCTCGAGGAGTCACT
Found at i:1158028 original size:43 final size:44
Alignment explanation
Indices: 1157967--1158054 Score: 160
Period size: 43 Copynumber: 2.0 Consensus size: 44
1157957 TTAAAAAATA
1157967 AAAAAATAACAATAACTAGGATCTAATCATCAGACAAAAGTGTT
1 AAAAAATAACAATAACTAGGATCTAATCATCAGACAAAAGTGTT
*
1158011 AAAAAA-AACAATAACTAGGATCTAATCATGAGACAAAAGTGTT
1 AAAAAATAACAATAACTAGGATCTAATCATCAGACAAAAGTGTT
1158054 A
1 A
1158055 CGGGTATCAA
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
43 37 0.86
44 6 0.14
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.22
Consensus pattern (44 bp):
AAAAAATAACAATAACTAGGATCTAATCATCAGACAAAAGTGTT
Found at i:1170093 original size:107 final size:107
Alignment explanation
Indices: 1169894--1170108 Score: 267
Period size: 107 Copynumber: 2.0 Consensus size: 107
1169884 CCCAAAAAGC
* * *
1169894 TAATATAATTATGTATATATAATGAAGTTGAACTATTCTTCTAAAGCAATTGGTTAAAAGCTCTG
1 TAATATAATTATGTATATATAATAAAGCTGAACTATTCTTCTAAAGCAATTGGTTAAAAGCTCTA
* * *
1169959 GCTTTCTGGATAGATTTCTTCAGCTAGCCAAAGAAAGGCAAA
66 GCTTTATGGATAAATTTCTTCAACTAGCCAAAGAAAGGCAAA
* *
1170001 TAATAT-A-TATGTATATATACAATAAAGCTGAGCTATT-TCTCTGAAGCAATTGGTTAAAAGCT
1 TAATATAATTATGTATATAT--AATAAAGCTGAACTATTCT-TCTAAAGCAATTGGTTAAAAGCT
* * *
1170063 CTAGCTTTATGGATAAA-TTCTTTCAACTAGCCGAATAAAGGTAAA
63 CTAGCTTTATGGATAAATTTC-TTCAACTAGCCAAAGAAAGGCAAA
1170108 T
1 T
1170109 TAAATTAAAT
Statistics
Matches: 93, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
105 11 0.12
106 5 0.05
107 77 0.83
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.34
Consensus pattern (107 bp):
TAATATAATTATGTATATATAATAAAGCTGAACTATTCTTCTAAAGCAATTGGTTAAAAGCTCTA
GCTTTATGGATAAATTTCTTCAACTAGCCAAAGAAAGGCAAA
Found at i:1171358 original size:116 final size:115
Alignment explanation
Indices: 1171197--1171498 Score: 363
Period size: 116 Copynumber: 2.6 Consensus size: 115
1171187 GTTCATAACG
* * *
1171197 AGAACTCGTCCGATAAGGGAGAAGAAGTTCCTAATAAGAAGAACTTGTTCAACCTTGGTTCGTCC
1 AGAACTCAT-CGATGAGGGAGAAGAAGTTCCTAATGAGAAGAACTTGTTCAACCTTGGTTCGTCC
* * ** * * * *
1171262 AACATAGAAGGAATTGGATTAAAATTTCTAGTGGAAGGGTTCATAATGAGA
65 ATCATAGAAGGAAGTGGACCAAAATTTCCAATGCAAGGGCTCATAATGAGA
* * * *
1171313 AGAACTCATCAGATGAGGGAGAAGAAGTTTCTAATGAGAAAAACTTGTTCAACCTTGATTCATCC
1 AGAACTCATC-GATGAGGGAGAAGAAGTTCCTAATGAGAAGAACTTGTTCAACCTTGGTTCGTCC
* * ** *
1171378 ATTATAGAAGGAGGTGGACCATCATTTCCAATGCAAGTGCTCATAATGAGA
65 ATCATAGAAGGAAGTGGACCAAAATTTCCAATGCAAGGGCTCATAATGAGA
* * *
1171429 AGAACTCGTTCGATGAGGGAGACGAAGTTCCTAATGAGAAGAAC-TGTTCAACCTTGGCTCGTCC
1 AGAACTC-ATCGATGAGGGAGAAGAAGTTCCTAATGAGAAGAACTTGTTCAACCTTGGTTCGTCC
1171493 ATCATA
65 ATCATA
1171499 TAAAGAGTTG
Statistics
Matches: 156, Mismatches: 28, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
115 23 0.15
116 131 0.84
117 2 0.01
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (115 bp):
AGAACTCATCGATGAGGGAGAAGAAGTTCCTAATGAGAAGAACTTGTTCAACCTTGGTTCGTCCA
TCATAGAAGGAAGTGGACCAAAATTTCCAATGCAAGGGCTCATAATGAGA
Found at i:1171615 original size:36 final size:36
Alignment explanation
Indices: 1171575--1171684 Score: 130
Period size: 36 Copynumber: 3.0 Consensus size: 36
1171565 TTCACTCAAG
* *
1171575 ATTTTATCTCACTTGAGATTATTTTTCTTAAAGCAT
1 ATTTTATCTCACTTGAGATTATTTTTCTTAAAACAA
* ** *
1171611 ATTTTATCTTACTTGAGATCGTTTTTCTTAAAATAA
1 ATTTTATCTCACTTGAGATTATTTTTCTTAAAACAA
* * *
1171647 ATTTTGTCCCACTTAAGATTATTTTTCTTAAAAACAA
1 ATTTTATCTCACTTGAGATTATTTTTCTT-AAAACAA
1171684 A
1 A
1171685 CTTTGAGATT
Statistics
Matches: 60, Mismatches: 13, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
36 53 0.88
37 7 0.12
ACGTcount: A:0.32, C:0.14, G:0.07, T:0.47
Consensus pattern (36 bp):
ATTTTATCTCACTTGAGATTATTTTTCTTAAAACAA
Found at i:1172266 original size:115 final size:115
Alignment explanation
Indices: 1172074--1172423 Score: 380
Period size: 116 Copynumber: 3.0 Consensus size: 115
1172064 GGAGTGACAA
* *
1172074 TTCCAATGGAAGGGTTCATAATGAGAAGAACTCGTCCGATGAGGGAGAATAAGTTCCTAATGAGA
1 TTCCAATGGAAGGGTTCATAATGAGAAGAACTCGTCCGAT-AAGGAGAATAAGTTCCTAATGAAA
* * * * * * ** **
1172139 AGAAATTTTTCAACCTTGGCTCGTCCA-CATATAAGGGGGTGGATCATGAT
65 AGAACTTGTTCAACCTTGACTCATCCATCACAGAAGGAAGTGGATCAACAT
* *
1172189 TTCCAATGGAAGGGTTCATAATGAAAAGAACTCGTCCGATAAGGAATAATAAGTTCCTAATGAAA
1 TTCCAATGGAAGGGTTCATAATGAGAAGAACTCGTCCGATAAGG-AGAATAAGTTCCTAATGAAA
* *
1172254 AGAACTTGTTCAACCTCGACTCATCCATCACAGAAGTAAGTGGATCAACAT
65 AGAACTTGTTCAACCTTGACTCATCCATCACAGAAGGAAGTGGATCAACAT
* ** * * * * *
1172305 TTCCAATGGAAGTGTTCATAATGAGAAGAACTTATCTGATGATGGAGAAGAAGTTCATAATGACA
1 TTCCAATGGAAGGGTTCATAATGAGAAGAACTCGTCCGAT-AAGGAGAATAAGTTCCTAATGAAA
* * *
1172370 AGAACTTGTTCGACCTTTTACTCAAATCCATCACAAAAGG-AGTTGGATCAACAT
65 AGAACTTGTTCAACC-TTGACTC--ATCCATCACAGAAGGAAG-TGGATCAACAT
1172424 CACCCTTTTG
Statistics
Matches: 197, Mismatches: 31, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
114 3 0.02
115 79 0.40
116 81 0.41
117 8 0.04
118 2 0.01
119 24 0.12
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (115 bp):
TTCCAATGGAAGGGTTCATAATGAGAAGAACTCGTCCGATAAGGAGAATAAGTTCCTAATGAAAA
GAACTTGTTCAACCTTGACTCATCCATCACAGAAGGAAGTGGATCAACAT
Found at i:1172446 original size:44 final size:44
Alignment explanation
Indices: 1172390--1172499 Score: 141
Period size: 44 Copynumber: 2.5 Consensus size: 44
1172380 CGACCTTTTA
* * *
1172390 CTCAAATCCATCACAAAAGGAGTTGGATCAACATCACCCTTT-T
1 CTCAATTCCATCATAAAAGGAGTTGGATCAACATCACCATTTCT
* * *
1172433 GCTCGATTCCATCATATAAGGAGTTGGATCAACATTACCATTTCT
1 -CTCAATTCCATCATAAAAGGAGTTGGATCAACATCACCATTTCT
*
1172478 CTCAATTCCATCATAGAAGGAG
1 CTCAATTCCATCATAAAAGGAG
1172500 GTTCAAATCC
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
44 56 0.98
45 1 0.02
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.28
Consensus pattern (44 bp):
CTCAATTCCATCATAAAAGGAGTTGGATCAACATCACCATTTCT
Found at i:1172510 original size:23 final size:23
Alignment explanation
Indices: 1172479--1172524 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
1172469 ACCATTTCTC
* * *
1172479 TCAATTCCATCATAGAAGGAGGT
1 TCAAATCCATCACAAAAGGAGGT
1172502 TCAAATCCATCACAAAAGGAGGT
1 TCAAATCCATCACAAAAGGAGGT
1172525 GAGTTAACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.22
Consensus pattern (23 bp):
TCAAATCCATCACAAAAGGAGGT
Found at i:1172595 original size:19 final size:20
Alignment explanation
Indices: 1172547--1172599 Score: 62
Period size: 16 Copynumber: 2.9 Consensus size: 20
1172537 CCAAAAAGGG
*
1172547 GTTCATAATGAGAAGAACGC
1 GTTCATAATGAGAAGAACGA
1172567 G-TCA-AA--AGAAGAA-GA
1 GTTCATAATGAGAAGAACGA
1172582 GTTCATAATGAGAAGAAC
1 GTTCATAATGAGAAGAAC
1172600 TTGTTTCCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 10
0.71 0.03 0.26
Matches are distributed among these distances:
15 2 0.07
16 10 0.37
17 2 0.07
18 2 0.07
19 10 0.37
20 1 0.04
ACGTcount: A:0.47, C:0.11, G:0.25, T:0.17
Consensus pattern (20 bp):
GTTCATAATGAGAAGAACGA
Found at i:1173896 original size:29 final size:28
Alignment explanation
Indices: 1173845--1174024 Score: 200
Period size: 29 Copynumber: 6.3 Consensus size: 28
1173835 TTTTAAAGAT
* * *
1173845 ATTATAATAAAGA-CAAAACTTTCTATGA
1 ATTACAATAAATATCAAAACTTT-TATAA
*
1173873 ATTACAATAAATACCAAAACTTTCTATAA
1 ATTACAATAAATATCAAAACTTT-TATAA
* *
1173902 ATTACAATAAATACCAAGACTTTTTATAA
1 ATTACAATAAATATCAAAAC-TTTTATAA
*
1173931 ATTACAATAAATATCAAAACTTTTGTAA
1 ATTACAATAAATATCAAAACTTTTATAA
* *
1173959 ATTATAATAAATATCAAAACATTTTAAAA
1 ATTACAATAAATATCAAAAC-TTTTATAA
* * *
1173988 ATTACAATAAACATCAAAACGCTTTATAT
1 ATTACAATAAATATCAAAAC-TTTTATAA
1174017 ATTACAAT
1 ATTACAAT
1174025 CAAAGAAAAA
Statistics
Matches: 133, Mismatches: 16, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
28 37 0.28
29 93 0.70
30 3 0.02
ACGTcount: A:0.51, C:0.13, G:0.03, T:0.33
Consensus pattern (28 bp):
ATTACAATAAATATCAAAACTTTTATAA
Found at i:1173968 original size:57 final size:57
Alignment explanation
Indices: 1173845--1174007 Score: 211
Period size: 57 Copynumber: 2.8 Consensus size: 57
1173835 TTTTAAAGAT
* * * *
1173845 ATTATAATAAAGACAAAACTTTCTATGAATTACAATAAATACCAAAACTTTCTATAA
1 ATTATAATAAATACAAAACTTTTTATAAATTACAATAAATATCAAAACTTTCTATAA
* * *
1173902 ATTACAATAAATACCAAGACTTTTTATAAATTACAATAAATATCAAAACTTT-TGTAA
1 ATTATAATAAATA-CAAAACTTTTTATAAATTACAATAAATATCAAAACTTTCTATAA
* * *
1173959 ATTATAATAAATATCAAAACATTTTAAAAATTACAATAAACATCAAAAC
1 ATTATAATAAATA-CAAAACTTTTTATAAATTACAATAAATATCAAAAC
1174008 GCTTTATATA
Statistics
Matches: 92, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
57 58 0.63
58 34 0.37
ACGTcount: A:0.53, C:0.13, G:0.02, T:0.32
Consensus pattern (57 bp):
ATTATAATAAATACAAAACTTTTTATAAATTACAATAAATATCAAAACTTTCTATAA
Found at i:1174047 original size:57 final size:55
Alignment explanation
Indices: 1173845--1174048 Score: 194
Period size: 57 Copynumber: 3.6 Consensus size: 55
1173835 TTTTAAAGAT
* * *
1173845 ATTATAATAAAGACAAAACTTTCTATGAATTACAATAAATACCAAAACTTTCTATAA
1 ATTACAATAAAGACAAAACTTTC-ATAAATTACAATAAATATCAAAACTTT-TATAA
* * * *
1173902 ATTACAATAAATACCAAGACTTTTTATAAATTACAATAAATATCAAAACTTTTGTAA
1 ATTACAATAAAGA-CAAAAC-TTTCATAAATTACAATAAATATCAAAACTTTTATAA
* * * * * * *
1173959 ATTATAATAAATATCAAAACATTTTAAAAATTACAATAAACATCAAAACGCTTTATAT
1 ATTACAATAAAGA-CAAAAC-TTTCATAAATTACAATAAATATCAAAAC-TTTTATAA
1174017 ATTACAATCAAAGA-AAAACTTCTCATAAATTA
1 ATTACAAT-AAAGACAAAACTT-TCATAAATTA
1174049 TAGTAACGAC
Statistics
Matches: 122, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
56 2 0.02
57 71 0.58
58 42 0.34
59 7 0.06
ACGTcount: A:0.51, C:0.13, G:0.03, T:0.32
Consensus pattern (55 bp):
ATTACAATAAAGACAAAACTTTCATAAATTACAATAAATATCAAAACTTTTATAA
Found at i:1174049 original size:86 final size:85
Alignment explanation
Indices: 1173843--1174050 Score: 231
Period size: 86 Copynumber: 2.4 Consensus size: 85
1173833 TTTTTTAAAG
* * * *
1173843 ATATTATAATAAAGACAAAACTTTCTATGAATTACAATAAATACCAAAACTTTCTATAAATTACA
1 ATATTACAATAAAGACAAAACTTTC-ATAAATTATAATAAATACCAAAACTTTCTAAAAATTACA
* * **
1173908 ATAAATACCAAGACTTTTTAT
65 ATAAACACCAAAACGCTTTAT
* * ** *
1173929 AAATTACAATAAATATCAAAACTTTTGTAAATTATAATAAATATCAAAACATTT-TAAAAATTAC
1 ATATTACAATAAAGA-CAAAACTTTCATAAATTATAATAAATACCAAAAC-TTTCTAAAAATTAC
*
1173993 AATAAACATCAAAACGCTTTAT
64 AATAAACACCAAAACGCTTTAT
1174015 ATATTACAATCAAAGA-AAAACTTCTCATAAATTATA
1 ATATTACAAT-AAAGACAAAACTT-TCATAAATTATA
1174051 GTAACGACTT
Statistics
Matches: 100, Mismatches: 18, Indels: 8
0.79 0.14 0.06
Matches are distributed among these distances:
85 7 0.07
86 77 0.77
87 16 0.16
ACGTcount: A:0.51, C:0.13, G:0.03, T:0.33
Consensus pattern (85 bp):
ATATTACAATAAAGACAAAACTTTCATAAATTATAATAAATACCAAAACTTTCTAAAAATTACAA
TAAACACCAAAACGCTTTAT
Found at i:1184276 original size:20 final size:21
Alignment explanation
Indices: 1184253--1184325 Score: 66
Period size: 20 Copynumber: 3.6 Consensus size: 21
1184243 ATCCTTTAAG
1184253 AATTTTTAATATTATTTTTA-
1 AATTTTTAATATTATTTTTAT
*
1184273 AA-TTTT-ATATTTTTTTTAT
1 AATTTTTAATATTATTTTTAT
**
1184292 ATATTTTTAA-ATT-TTTAAAT
1 A-ATTTTTAATATTATTTTTAT
1184312 AATTATTTAATATT
1 AATT-TTTAATATT
1184326 TTAGAATATA
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
18 11 0.25
19 8 0.18
20 14 0.32
21 10 0.23
22 1 0.02
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (21 bp):
AATTTTTAATATTATTTTTAT
Found at i:1184347 original size:22 final size:20
Alignment explanation
Indices: 1184290--1184350 Score: 72
Period size: 20 Copynumber: 3.0 Consensus size: 20
1184280 TATTTTTTTT
1184290 ATATATTTTTAA-ATTTTTAA
1 ATATATTTTTAATA-TTTTAA
1184310 ATA-ATTATTTAATATTTTAGA
1 ATATATT-TTTAATATTTTA-A
1184331 ATATATTTTGTAATATTTTA
1 ATATATTTT-TAATATTTTA
1184351 TAATTTATAA
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
19 3 0.08
20 13 0.36
21 7 0.19
22 13 0.36
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.57
Consensus pattern (20 bp):
ATATATTTTTAATATTTTAA
Found at i:1184347 original size:29 final size:28
Alignment explanation
Indices: 1184315--1184389 Score: 89
Period size: 30 Copynumber: 2.6 Consensus size: 28
1184305 TTTAAATAAT
*
1184315 TATTTAATATTTTAGAATATATTTTGTAA
1 TATTTTATATTTTAGAATA-ATTTTGTAA
* *
1184344 TATTTTATAATTTATAAAATAATTTTGTGA
1 TATTTTAT-ATTT-TAGAATAATTTTGTAA
1184374 TATTTTATA-TTTAGAA
1 TATTTTATATTTTAGAA
1184390 AACAAATATT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
27 4 0.10
28 2 0.05
29 8 0.20
30 20 0.50
31 6 0.15
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.55
Consensus pattern (28 bp):
TATTTTATATTTTAGAATAATTTTGTAA
Found at i:1184371 original size:30 final size:30
Alignment explanation
Indices: 1184330--1184391 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
1184320 AATATTTTAG
*
1184330 AATATATTTTGTAATATTTTATAATTTATAA
1 AATATATTTTGTAATATTTTAT-ATTTAGAA
*
1184361 AATA-ATTTTGTGATATTTTATATTTAGAA
1 AATATATTTTGTAATATTTTATATTTAGAA
1184390 AA
1 AA
1184392 CAAATATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 9 0.31
30 16 0.55
31 4 0.14
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (30 bp):
AATATATTTTGTAATATTTTATATTTAGAA
Found at i:1190252 original size:22 final size:23
Alignment explanation
Indices: 1190227--1190270 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
1190217 AGGGAAAATA
*
1190227 TTTCGAGAGAGATGAA-ATTTTG
1 TTTCGAGAGAGACGAATATTTTG
*
1190249 TTTCGAGTGAGACGAATATTTT
1 TTTCGAGAGAGACGAATATTTT
1190271 AAAGGGAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.39
Consensus pattern (23 bp):
TTTCGAGAGAGACGAATATTTTG
Found at i:1190281 original size:55 final size:55
Alignment explanation
Indices: 1190196--1190310 Score: 144
Period size: 55 Copynumber: 2.1 Consensus size: 55
1190186 AGAAACCGTC
* * * * *
1190196 TCGAGTGAGATGAAAGTTTCAAGGGAAAATATTTCGAG-AGAGATGAAATTTTGTT
1 TCGAGTGAGACGAAAGTTTAAAGGGAAAATATCTCAAGCA-AGATAAAATTTTGTT
*
1190251 TCGAGTGAGACGAATATTTTAAAGGG-AAATATCTCAAGCAAGATAAAATTTTGTT
1 TCGAGTGAGACGAA-AGTTTAAAGGGAAAATATCTCAAGCAAGATAAAATTTTGTT
1190306 TCGAG
1 TCGAG
1190311 AGAAACTGTC
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
55 42 0.81
56 10 0.19
ACGTcount: A:0.37, C:0.08, G:0.24, T:0.30
Consensus pattern (55 bp):
TCGAGTGAGACGAAAGTTTAAAGGGAAAATATCTCAAGCAAGATAAAATTTTGTT
Found at i:1190312 original size:125 final size:125
Alignment explanation
Indices: 1190142--1190387 Score: 341
Period size: 125 Copynumber: 2.0 Consensus size: 125
1190132 TGAGGAATTT
* * * * *
1190142 TTTTTAAGAGAAATATCTCGAGTAAGATGAAATTGTGTTTTGAGAGAAACCGTCTCGAGTGAGAT
1 TTTTAAAGAGAAATATCTCAAGCAAGATAAAATTGTGTTTCGAGAGAAACCGTCTCGAGTGAGAT
* * * * *
1190207 -GAAAGTTTCAAGGGAAAATATTTCGAGAGAGATGAAATTTTGTTTCGAGTGAGACGAATA
66 AAAAAATTTCAAGGG-AAATATCTCAAGAGAGATGAAATTTTGTTTCGAGAGAGACGAATA
* * *
1190267 TTTTAAAGGGAAATATCTCAAGCAAGATAAAATTTTGTTTCGAGAGAAACTGTCTCGAGTGAGAT
1 TTTTAAAGAGAAATATCTCAAGCAAGATAAAATTGTGTTTCGAGAGAAACCGTCTCGAGTGAGAT
*
1190332 AAAAAAATTTCAAGGGAAATATCTCAAGAGAGGTGAAATTTTGTTTCGAGAGAGAC
66 -AAAAAATTTCAAGGGAAATATCTCAAGAGAGATGAAATTTTGTTTCGAGAGAGAC
1190388 CGTATCGAGT
Statistics
Matches: 105, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
125 57 0.54
126 36 0.34
127 12 0.11
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.29
Consensus pattern (125 bp):
TTTTAAAGAGAAATATCTCAAGCAAGATAAAATTGTGTTTCGAGAGAAACCGTCTCGAGTGAGAT
AAAAAATTTCAAGGGAAATATCTCAAGAGAGATGAAATTTTGTTTCGAGAGAGACGAATA
Found at i:1190529 original size:38 final size:37
Alignment explanation
Indices: 1190419--1190529 Score: 100
Period size: 38 Copynumber: 2.9 Consensus size: 37
1190409 AGGGAGAACC
* * *
1190419 ATCTCAAGTGAGATAAAATTTTTGTTTC-AAGGACATT
1 ATCTCAAGTGAGAT-AAATTTTTGTTTCGAAGAAAACT
* * *
1190456 GTCTCAAGTGAGATGAAATTTGTT-TTTTGAGGAAAACT
1 ATCTCAAGTGAGAT-AAATTT-TTGTTTCGAAGAAAACT
* *
1190494 ATCTCAAGTGTGATAATATTTTTGTTTCGATGAAAA
1 ATCTCAAGTGAGATAA-ATTTTTGTTTCGAAGAAAA
1190530 AAGTGAAACA
Statistics
Matches: 59, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
37 26 0.44
38 33 0.56
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (37 bp):
ATCTCAAGTGAGATAAATTTTTGTTTCGAAGAAAACT
Found at i:1197927 original size:16 final size:17
Alignment explanation
Indices: 1197905--1197942 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
1197895 TTTTTATTTG
*
1197905 TAATAATAATAATATAA
1 TAATAATAATAACATAA
*
1197922 -AATAATAGTAACATAA
1 TAATAATAATAACATAA
1197938 TAATA
1 TAATA
1197943 TATATAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.32
Consensus pattern (17 bp):
TAATAATAATAACATAA
Found at i:1197961 original size:13 final size:12
Alignment explanation
Indices: 1197907--1197967 Score: 50
Period size: 13 Copynumber: 4.8 Consensus size: 12
1197897 TTTATTTGTA
1197907 ATAATAATAATAT
1 ATAATAAT-ATAT
* *
1197920 AAAATAATAGTAAC
1 ATAATAATA-T-AT
1197934 ATAATAATATAT
1 ATAATAATATAT
*
1197946 ATAATTATATTAT
1 ATAATAATA-TAT
*
1197959 ATAAAAATA
1 ATAATAATA
1197968 AAAAACAGAC
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
12 10 0.26
13 19 0.50
14 9 0.24
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (12 bp):
ATAATAATATAT
Found at i:1198126 original size:20 final size:20
Alignment explanation
Indices: 1198098--1198146 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
1198088 CATCTACCAT
* *
1198098 GAGGTTTTACATATGACCCA
1 GAGGATTTACAAATGACCCA
* *
1198118 GAGGATTTACAAATTACCCG
1 GAGGATTTACAAATGACCCA
1198138 GAGGATTTA
1 GAGGATTTA
1198147 ATTTTCTGGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (20 bp):
GAGGATTTACAAATGACCCA
Found at i:1198259 original size:20 final size:20
Alignment explanation
Indices: 1198217--1198264 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
1198207 TCCTACCCTA
* *
1198217 AGGTTTTACAGATGACCTAG
1 AGGTTTTACAAATGACCCAG
* *
1198237 AGGTTTTACAAATTACCCGG
1 AGGTTTTACAAATGACCCAG
*
1198257 AGGATTTA
1 AGGTTTTA
1198265 ATTTTCTAGA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (20 bp):
AGGTTTTACAAATGACCCAG
Found at i:1198331 original size:119 final size:118
Alignment explanation
Indices: 1198084--1198487 Score: 639
Period size: 119 Copynumber: 3.4 Consensus size: 118
1198074 ATCAAAAATA
* * * *
1198084 AAAACATCTACCATGAGGTTTTACATATGACCCAGAGGATTTACAAATTACCCGGAGGATTTAAT
1 AAAACATCTACCCTAAGGTTTTACAGATGACCCAGAGGTTTTACAAATTACCCGGAGGATTTAAT
* * * *
1198149 TTTCT-GGACATTAAATGAAAAACTTTGAAAATCGTTTTCTCATTTTCATACG
66 TTTCTAGAACATTAAATGAGAAACTTTGAAAATCGCTTTCTCATTTTCATGCG
*
1198201 AAAACATCCTACCCTAAGGTTTTACAGATGACCTAGAGGTTTTACAAATTACCCGGAGGATTTAA
1 AAAACAT-CTACCCTAAGGTTTTACAGATGACCCAGAGGTTTTACAAATTACCCGGAGGATTTAA
1198266 TTTTCTAGAACATTAAATGAGAAACTTTGAAAATCGCTTTCTCATTTTCATGCG
65 TTTTCTAGAACATTAAATGAGAAACTTTGAAAATCGCTTTCTCATTTTCATGCG
* * *
1198320 AAAACATCCTACCCTAAGGTTTCACAGATGACCCGGAGGTTTTACAAATTACCCGAAGGATTTAA
1 AAAACAT-CTACCCTAAGGTTTTACAGATGACCCAGAGGTTTTACAAATTACCCGGAGGATTTAA
*
1198385 TTTTCTAGAACATTAAATGAGAAACTTTGAAAATCACTTTCTCATTTTCATGCG
65 TTTTCTAGAACATTAAATGAGAAACTTTGAAAATCGCTTTCTCATTTTCATGCG
* * *
1198439 AAAACATCTACCCTGAGGTTTTACAGATGACCCGGAGGTTCTACAAATT
1 AAAACATCTACCCTAAGGTTTTACAGATGACCCAGAGGTTTTACAAATT
1198488 TGTGGGAAAT
Statistics
Matches: 268, Mismatches: 17, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
117 7 0.03
118 97 0.36
119 164 0.61
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (118 bp):
AAAACATCTACCCTAAGGTTTTACAGATGACCCAGAGGTTTTACAAATTACCCGGAGGATTTAAT
TTTCTAGAACATTAAATGAGAAACTTTGAAAATCGCTTTCTCATTTTCATGCG
Found at i:1198373 original size:20 final size:20
Alignment explanation
Indices: 1198336--1198374 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
1198326 TCCTACCCTA
*
1198336 AGGTTTCACAGATGACCCGG
1 AGGTTTCACAAATGACCCGG
* *
1198356 AGGTTTTACAAATTACCCG
1 AGGTTTCACAAATGACCCG
1198375 AAGGATTTAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (20 bp):
AGGTTTCACAAATGACCCGG
Found at i:1201428 original size:13 final size:13
Alignment explanation
Indices: 1201412--1201504 Score: 68
Period size: 12 Copynumber: 7.1 Consensus size: 13
1201402 ATTCAATTTC
1201412 TTTTTCTTCTTC-
1 TTTTTCTTCTTCT
*
1201424 TTTTTCATCTCTCT
1 TTTTTCTTCT-TCT
1201438 TTTTT-TTCCTT-T
1 TTTTTCTT-CTTCT
*
1201450 TTTTTCTCTTTTCTT
1 TTTTTCT-TCTTC-T
*
1201465 TTTTTCTTTTTC-
1 TTTTTCTTCTTCT
*
1201477 TTTTTATTCTTTCT
1 TTTTTCTTC-TTCT
*
1201491 TTTTTCTTTTTCT
1 TTTTTCTTCTTCT
1201504 T
1 T
1201505 CTTTAAGGAT
Statistics
Matches: 65, Mismatches: 7, Indels: 17
0.73 0.08 0.19
Matches are distributed among these distances:
12 22 0.34
13 15 0.23
14 20 0.31
15 8 0.12
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTTTCTTCTTCT
Found at i:1201452 original size:8 final size:8
Alignment explanation
Indices: 1201438--1201508 Score: 56
Period size: 8 Copynumber: 8.4 Consensus size: 8
1201428 TCATCTCTCT
1201438 TTTTTTTCC
1 TTTTTTT-C
1201447 TTTTTTT-
1 TTTTTTTC
*
1201454 TCTCTTTTC
1 T-TTTTTTC
1201463 TTTTTTTC
1 TTTTTTTC
*
1201471 TTTTTCTTT
1 TTTTT-TTC
1201480 TTATTCTTTC
1 TT-TT-TTTC
1201490 -TTTTTTC
1 TTTTTTTC
1201497 TTTTTCTTC
1 TTTTT-TTC
1201506 TTT
1 TTT
1201509 AAGGATGAGT
Statistics
Matches: 51, Mismatches: 4, Indels: 14
0.74 0.06 0.20
Matches are distributed among these distances:
7 5 0.10
8 22 0.43
9 19 0.37
10 4 0.08
11 1 0.02
ACGTcount: A:0.01, C:0.17, G:0.00, T:0.82
Consensus pattern (8 bp):
TTTTTTTC
Found at i:1201453 original size:26 final size:25
Alignment explanation
Indices: 1201410--1201501 Score: 75
Period size: 25 Copynumber: 3.6 Consensus size: 25
1201400 TGATTCAATT
* *
1201410 TCTTTTTCTTCTTCTTTTTCATCTC
1 TCTTTTTTTTCTTTTTTTTCATCTC
1201435 TCTTTTTTTTCCTTTTTTTTC-TCT-
1 TCTTTTTTTT-CTTTTTTTTCATCTC
* *
1201459 TTTCTTTTTTTCTTTTTCTTTTTAT-TC
1 TCT-TTTTTTTC-TTTT-TTTTCATCTC
1201486 T-TTCTTTTTTCTTTTT
1 TCTT-TTTTTTCTTTTT
1201502 CTTCTTTAAG
Statistics
Matches: 56, Mismatches: 4, Indels: 15
0.75 0.05 0.20
Matches are distributed among these distances:
24 4 0.07
25 28 0.50
26 22 0.39
27 2 0.04
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (25 bp):
TCTTTTTTTTCTTTTTTTTCATCTC
Found at i:1201481 original size:7 final size:7
Alignment explanation
Indices: 1201449--1201501 Score: 56
Period size: 7 Copynumber: 7.7 Consensus size: 7
1201439 TTTTTTCCTT
1201449 TTTTTTC
1 TTTTTTC
*
1201456 TCTTTTC
1 TTTTTTC
1201463 TTTTTT-
1 TTTTTTC
1201469 TCTTTTTC
1 T-TTTTTC
*
1201477 -TTTTTA
1 TTTTTTC
*
1201483 TTCTTTC
1 TTTTTTC
1201490 TTTTTTC
1 TTTTTTC
1201497 TTTTT
1 TTTTT
1201502 CTTCTTTAAG
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
6 6 0.16
7 31 0.84
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (7 bp):
TTTTTTC
Found at i:1201501 original size:20 final size:19
Alignment explanation
Indices: 1201438--1201508 Score: 74
Period size: 20 Copynumber: 3.6 Consensus size: 19
1201428 TCATCTCTCT
1201438 TTTTTTTCCTTT-TTTTTCTC
1 TTTTTTT-CTTTCTTTTT-TC
*
1201458 TTTTCTTTTTTTC-TTTTTC
1 TTTT-TTTCTTTCTTTTTTC
1201477 TTTTTATTCTTTCTTTTTTC
1 TTTTT-TTCTTTCTTTTTTC
1201497 TTTTTCTTCTTT
1 TTTTT-TTCTTT
1201509 AAGGATGAGT
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
18 1 0.02
19 12 0.27
20 28 0.64
21 3 0.07
ACGTcount: A:0.01, C:0.17, G:0.00, T:0.82
Consensus pattern (19 bp):
TTTTTTTCTTTCTTTTTTC
Found at i:1201502 original size:26 final size:26
Alignment explanation
Indices: 1201408--1201509 Score: 88
Period size: 26 Copynumber: 3.9 Consensus size: 26
1201398 CTTGATTCAA
*
1201408 TTTC-TTTTTCTTCTTCTTTTTCATCTC
1 TTTCTTTTTTCTTTTTCTTTTT-AT-TC
* *
1201435 TCTT-TTTTTTC-CTTT-TTTTT-CTC
1 T-TTCTTTTTTCTTTTTCTTTTTATTC
1201458 TTTTCTTTTTTTCTTTTTCTTTTTATTC
1 -TTTC-TTTTTTCTTTTTCTTTTTATTC
1201486 TTTCTTTTTTCTTTTTCTTCTTTA
1 TTTCTTTTTTCTTTTTCTT-TTTA
1201510 AGGATGAGTA
Statistics
Matches: 61, Mismatches: 5, Indels: 18
0.73 0.06 0.21
Matches are distributed among these distances:
23 4 0.07
24 1 0.02
25 7 0.11
26 23 0.38
27 16 0.26
28 10 0.16
ACGTcount: A:0.03, C:0.20, G:0.00, T:0.77
Consensus pattern (26 bp):
TTTCTTTTTTCTTTTTCTTTTTATTC
Found at i:1202656 original size:154 final size:153
Alignment explanation
Indices: 1202478--1202784 Score: 557
Period size: 154 Copynumber: 2.0 Consensus size: 153
1202468 AAACAAATTC
1202478 AAACAAGATGTGAAAATGAAATGCAATTGTGGTAGATAACAATATCCACTTATTTATCTAGAATG
1 AAACAAGATGTGAAAATGAAATGCAATTGTGGTAGATAACAATATCCACTTATTTATCTAGAATG
1202543 CCCCATCATTTATTCATTGTGACGACAATTGACTTAATCATGCTTTGATGCCCCACTTG-GTTTG
66 CCCCATC----ATTCATTGTGACGACAATTGACTTAATCATGCTTTGATGCCCCACTTGAGTTTG
1202607 TCATCCA-TGTTCTACCAATTCATGTG
127 TCATCCATTGTTCTACCAATTCATGTG
1202633 AAACAAGATGTG-AAATGAAATGCAATTGTGGTAGATAACAATATCCACTTATTTATCTAGAATG
1 AAACAAGATGTGAAAATGAAATGCAATTGTGGTAGATAACAATATCCACTTATTTATCTAGAATG
1202697 CCCCATCATTCATTGTGACGACAATTGACTTAATCATGCTTTGATGCCCCACTTGAGTTTGTCAT
66 CCCCATCATTCATTGTGACGACAATTGACTTAATCATGCTTTGATGCCCCACTTGAGTTTGTCAT
1202762 CCATTGTTCTACCAATTCATGTG
131 CCATTGTTCTACCAATTCATGTG
1202785 TCAATGTCCC
Statistics
Matches: 150, Mismatches: 0, Indels: 7
0.96 0.00 0.04
Matches are distributed among these distances:
150 48 0.32
151 12 0.08
152 19 0.13
154 59 0.39
155 12 0.08
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.34
Consensus pattern (153 bp):
AAACAAGATGTGAAAATGAAATGCAATTGTGGTAGATAACAATATCCACTTATTTATCTAGAATG
CCCCATCATTCATTGTGACGACAATTGACTTAATCATGCTTTGATGCCCCACTTGAGTTTGTCAT
CCATTGTTCTACCAATTCATGTG
Found at i:1206801 original size:88 final size:87
Alignment explanation
Indices: 1206652--1206829 Score: 347
Period size: 88 Copynumber: 2.0 Consensus size: 87
1206642 CAACGCCCAA
1206652 AATTAGTACCGGTGTTTATTAATTAATTTGTCTTTGCAATATATTAACAAATTTGTATTTAATTT
1 AATTAGTACCGGTGTTTATTAATTAATTTGTCTTTGCAATATATTAACAAATTTGTATTTAATTT
1206717 TAATTTATAATCCCAAAAATAAT
66 TAATTTATAATCCC-AAAATAAT
1206740 AATTAGTACCGGTGTTTATTAATTAATTTGTCTTTGCAATATATTAACAAATTTGTATTTAATTT
1 AATTAGTACCGGTGTTTATTAATTAATTTGTCTTTGCAATATATTAACAAATTTGTATTTAATTT
1206805 TAATTTATAATCCCAAAATAAT
66 TAATTTATAATCCCAAAATAAT
1206827 AAT
1 AAT
1206830 AATATCATTT
Statistics
Matches: 90, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
87 11 0.12
88 79 0.88
ACGTcount: A:0.38, C:0.09, G:0.08, T:0.46
Consensus pattern (87 bp):
AATTAGTACCGGTGTTTATTAATTAATTTGTCTTTGCAATATATTAACAAATTTGTATTTAATTT
TAATTTATAATCCCAAAATAAT
Found at i:1208289 original size:11 final size:11
Alignment explanation
Indices: 1208273--1208329 Score: 53
Period size: 11 Copynumber: 5.1 Consensus size: 11
1208263 TATTTATTTG
1208273 TAATAATAATA
1 TAATAATAATA
*
1208284 TAATAATAAAA
1 TAATAATAATA
* *
1208295 CAATAATAGTA
1 TAATAATAATA
1208306 -ACATAATAATA
1 TA-ATAATAATA
*
1208317 TATATAATTATA
1 TA-ATAATAATA
1208329 T
1 T
1208330 TATATAAAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
10 1 0.03
11 26 0.70
12 10 0.27
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.35
Consensus pattern (11 bp):
TAATAATAATA
Found at i:1208292 original size:14 final size:13
Alignment explanation
Indices: 1208273--1208336 Score: 53
Period size: 12 Copynumber: 5.0 Consensus size: 13
1208263 TATTTATTTG
1208273 TAATAATAATATAA
1 TAAT-ATAATATAA
*
1208287 TAATA-AA-ACAA
1 TAATATAATATAA
*
1208298 TAATAGTAACATAA
1 TAATA-TAATATAA
1208312 TAATAT-ATATAA
1 TAATATAATATAA
* *
1208324 TTATATTATATAA
1 TAATATAATATAA
1208337 AAACGAAAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
11 8 0.19
12 12 0.29
13 10 0.24
14 12 0.29
ACGTcount: A:0.59, C:0.03, G:0.02, T:0.36
Consensus pattern (13 bp):
TAATATAATATAA
Found at i:1208335 original size:13 final size:12
Alignment explanation
Indices: 1208273--1208336 Score: 51
Period size: 11 Copynumber: 5.2 Consensus size: 12
1208263 TATTTATTTG
1208273 TAATAATA-ATA
1 TAATAATATATA
*
1208284 TAATAATA-AAA
1 TAATAATATATA
* *
1208295 CAATAATAGTAACA
1 TAATAATA-T-ATA
1208309 TAATAATATATA
1 TAATAATATATA
*
1208321 TAATTATATTATA
1 TAATAATA-TATA
1208334 TAA
1 TAA
1208337 AAACGAAAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
11 17 0.40
12 9 0.21
13 8 0.19
14 9 0.21
ACGTcount: A:0.59, C:0.03, G:0.02, T:0.36
Consensus pattern (12 bp):
TAATAATATATA
Found at i:1210066 original size:21 final size:21
Alignment explanation
Indices: 1210034--1210090 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
1210024 TTTTACACAC
*
1210034 AGTGTACCGATGCACCTTGAT
1 AGTGCACCGATGCACCTTGAT
*
1210055 AGTGCACTGATGCACCTTGAT
1 AGTGCACCGATGCACCTTGAT
1210076 AGTGCACCGATGCAC
1 AGTGCACCGATGCAC
1210091 ACACGCTCCC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.25
Consensus pattern (21 bp):
AGTGCACCGATGCACCTTGAT
Found at i:1216731 original size:215 final size:215
Alignment explanation
Indices: 1216360--1216791 Score: 810
Period size: 215 Copynumber: 2.0 Consensus size: 215
1216350 TGAAAAATAT
* *
1216360 GAAGACTTTGTGGCTCAAGGCCCTTGCGTCGTGGTTAGTGTCCACGATCAGCCCTCACCTTCTTC
1 GAAGACTATGTGGCTCAAGGCCCTTGCGTCGTGGTTACTGTCCACGATCAGCCCTCACCTTCTTC
*
1216425 CCTAATTAGTTGGTGTTGAAACGACAGTCGTCGTTTCGAATACCGTGCTCCACTTCTTTGCCAAT
66 CCTAATTAGTTGGTGTTGAAACGACAGTCGCCGTTTCGAATACCGTGCTCCACTTCTTTGCCAAT
*
1216490 CACTCAACAACAGCAGTCATGAGTCTTTATTATAAACTTCAATCTTTAAAGAAAGGCGGGGACAG
131 CACTCAACAACAGCAGTCATGAGTCTTCATTATAAACTTCAATCTTTAAAGAAAGGCGGGGACAG
1216555 TATGTGAACTTACCTCACTC
196 TATGTGAACTTACCTCACTC
1216575 GAAGACTATGTGGCTCAAGGCCCTTGCGTCGTGGTTACTGTCCACGATCAGCCCTCACCTTCTTC
1 GAAGACTATGTGGCTCAAGGCCCTTGCGTCGTGGTTACTGTCCACGATCAGCCCTCACCTTCTTC
* *
1216640 CCTAATTCGTTGGTGTTGAAACGACAGTCGCCGTTTCGAATATCGTGCTCCACTTCTTTGCCAAT
66 CCTAATTAGTTGGTGTTGAAACGACAGTCGCCGTTTCGAATACCGTGCTCCACTTCTTTGCCAAT
1216705 CACTCAACAACAGCAGTCATGAGTCTTCATTATAAACTTCAATCTTTAAAGAAAGGCGGGGACAG
131 CACTCAACAACAGCAGTCATGAGTCTTCATTATAAACTTCAATCTTTAAAGAAAGGCGGGGACAG
1216770 TATGTGAACTTACCTCACTC
196 TATGTGAACTTACCTCACTC
1216790 GA
1 GA
1216792 GTGAAAGAGG
Statistics
Matches: 211, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
215 211 1.00
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (215 bp):
GAAGACTATGTGGCTCAAGGCCCTTGCGTCGTGGTTACTGTCCACGATCAGCCCTCACCTTCTTC
CCTAATTAGTTGGTGTTGAAACGACAGTCGCCGTTTCGAATACCGTGCTCCACTTCTTTGCCAAT
CACTCAACAACAGCAGTCATGAGTCTTCATTATAAACTTCAATCTTTAAAGAAAGGCGGGGACAG
TATGTGAACTTACCTCACTC
Found at i:1219235 original size:16 final size:17
Alignment explanation
Indices: 1219214--1219253 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
1219204 AAAATATGAT
1219214 TAATTTTATC-TAAAAG
1 TAATTTTATCATAAAAG
*
1219230 TAA-TTTA-CATAAAAT
1 TAATTTTATCATAAAAG
1219245 TAATTTTAT
1 TAATTTTAT
1219254 AAATAGGATT
Statistics
Matches: 20, Mismatches: 1, Indels: 5
0.77 0.04 0.19
Matches are distributed among these distances:
14 1 0.05
15 12 0.60
16 7 0.35
ACGTcount: A:0.45, C:0.05, G:0.03, T:0.47
Consensus pattern (17 bp):
TAATTTTATCATAAAAG
Found at i:1219319 original size:3 final size:3
Alignment explanation
Indices: 1219311--1219340 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
1219301 TATATGACTA
1219311 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1219341 TAAACATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Done.