genome.fa.s7868.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007868.1 Hibiscus syriacus cultivar Beakdansim tig00110241_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  250609

Tables:   1   2   

This is table  1  of  2  ( 124 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16696--16727	10	3.3	10	95	4	57	0	15	0	84	0.63
16717--16762	22	2.1	21	88	4	65	8	13	0	78	0.97
18729--18753	10	2.5	10	100	0	50	52	20	8	20	1.71
30890--30952	34	1.9	33	87	6	92	30	25	11	33	1.90
34729--34786	13	4.2	13	78	12	62	65	0	3	31	1.09
36876--36921	24	1.9	24	82	8	58	76	4	2	17	1.06
56660--56694	12	2.9	12	84	16	54	0	28	2	68	1.04
58830--59648	81	10.1	81	87	1	976	35	10	22	31	1.87
61245--61901	81	8.1	81	86	0	758	35	10	22	31	1.88
61245--61885	243	2.6	243	86	1	836	35	10	22	31	1.88
69121--69226	17	6.1	17	73	4	77	38	13	9	38	1.77
74248--74277	7	4.3	7	91	0	51	66	0	16	16	1.25
79830--79946	38	3.1	38	100	0	234	42	10	10	36	1.73
88611--88689	4	19.5	4	77	12	63	64	2	0	32	1.07
88611--88689	12	6.5	12	80	11	81	64	2	0	32	1.07
89713--89737	2	12.5	2	100	0	50	48	0	0	52	1.00
90971--91002	10	3.3	10	95	4	57	75	0	0	25	0.81
91081--91573	181	2.7	182	84	1	587	39	13	8	38	1.75
97373--97419	24	2.0	24	95	4	87	36	4	4	55	1.39
97381--97430	24	2.1	24	88	3	75	44	6	4	46	1.47
97852--98748	163	5.5	162	81	4	876	37	14	19	28	1.91
97833--98748	323	2.8	322	80	4	903	37	14	19	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98691--98786	39	2.5	38	81	8	106	45	12	19	21	1.83
99815--100021	111	1.9	111	79	4	238	25	18	16	39	1.91
100208--100299	14	6.5	14	69	14	55	22	13	4	59	1.51
101665--101708	16	3.0	16	78	21	60	13	27	20	38	1.90
101658--101705	12	3.7	12	77	20	51	8	29	22	39	1.83
102037--102062	2	13.0	2	100	0	52	50	0	0	50	1.00
103191--103839	183	3.6	183	87	3	914	42	13	15	28	1.84
106268--106402	66	2.0	66	81	0	153	32	2	40	24	1.67
111248--111510	128	2.1	128	81	10	299	39	11	15	34	1.83
111349--112130	200	3.9	199	87	3	1092	39	13	15	31	1.86
111941--111983	19	2.1	21	87	8	63	39	11	20	27	1.88
111376--112130	401	1.9	400	89	2	1176	39	13	15	31	1.86
115098--115156	24	2.5	23	75	5	64	25	8	10	55	1.61
119109--119366	118	2.2	117	88	4	369	30	18	13	37	1.90
122165--122651	98	5.0	98	88	4	705	29	16	18	34	1.94
122170--122652	195	2.5	197	89	3	751	29	16	18	34	1.94
122730--123299	249	2.3	249	89	2	860	34	16	15	33	1.90
124600--124701	41	2.5	40	85	10	127	31	25	12	30	1.93
126848--126906	31	1.9	31	100	0	118	33	18	20	27	1.96
135316--135398	22	3.9	22	67	13	57	42	4	1	51	1.30
135314--135398	41	2.1	41	85	8	113	42	5	1	50	1.34
135355--135387	2	17.5	2	87	12	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135333--135417	41	2.1	40	82	10	102	44	7	1	47	1.38
135596--136279	89	7.7	89	89	1	1012	31	18	19	30	1.96
136285--136411	29	4.1	29	71	16	92	33	19	21	25	1.97
136280--136491	67	3.2	67	91	0	327	34	18	22	25	1.96
136314--136446	38	3.8	37	73	17	138	33	20	21	24	1.97
137032--137144	42	2.7	41	72	1	100	32	19	20	27	1.97
140739--140774	17	2.1	17	89	0	54	22	16	16	44	1.86
144977--145042	27	2.6	25	76	21	75	63	4	0	31	1.14
144991--145064	28	2.7	28	82	12	84	66	4	1	28	1.18
145297--145328	16	2.0	16	93	0	55	71	0	0	28	0.86
146206--146239	18	1.9	17	88	5	50	0	32	17	50	1.47
146646--146686	3	14.0	3	94	5	75	65	0	0	34	0.93
146648--146682	17	2.1	17	100	0	70	65	0	0	34	0.93
146646--146685	20	2.0	20	100	0	80	65	0	0	35	0.93
146970--147024	28	2.0	28	100	0	110	30	14	25	29	1.95
146894--147099	104	2.0	104	97	0	385	33	19	21	24	1.97
146998--147338	76	4.5	76	99	0	655	35	21	21	21	1.96
146852--147175	180	1.8	180	95	1	587	35	20	21	22	1.96
148014--148093	22	3.6	22	72	0	79	40	12	12	35	1.81
148445--148556	54	2.1	54	89	0	170	22	23	16	38	1.93
150690--151087	93	4.0	93	75	17	383	35	20	13	30	1.91
150589--151114	208	2.5	208	94	1	898	33	20	14	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
150783--150990	115	1.8	115	88	4	321	34	19	14	31	1.92
158421--158486	27	2.6	25	76	21	75	63	4	0	31	1.14
158430--158497	27	2.7	27	82	13	74	64	4	0	30	1.13
158741--158772	16	2.0	16	93	0	55	71	0	0	28	0.86
159648--159681	18	1.9	17	88	5	50	2	32	14	50	1.58
160089--160133	3	15.0	3	90	0	72	62	2	0	35	1.08
160959--160990	15	2.1	15	94	0	55	53	0	3	43	1.16
161373--161420	23	2.1	23	100	0	96	20	35	27	16	1.94
161604--161685	3	28.0	3	78	14	91	1	3	32	62	1.21
161598--161685	34	2.6	34	92	5	144	1	3	32	62	1.19
162222--162287	22	3.4	18	80	16	71	37	4	1	56	1.29
162238--162378	23	6.2	22	74	12	72	42	8	0	48	1.39
162253--162360	32	3.2	33	78	10	121	42	9	0	47	1.42
162260--162349	34	2.6	33	84	5	108	43	10	1	45	1.44
162311--162378	23	3.0	23	97	2	129	44	11	0	44	1.40
163958--164093	60	2.2	60	80	6	150	39	3	26	30	1.73
166895--166927	14	2.3	15	85	15	52	21	6	18	54	1.64
166913--166959	24	1.9	25	86	4	69	19	6	14	59	1.56
169624--169743	23	5.7	20	71	23	70	75	1	5	18	1.07
169633--169677	19	2.3	19	88	11	65	77	0	2	20	0.87
169618--169694	27	2.8	25	81	16	82	77	2	3	15	1.02
169624--169691	20	3.3	20	82	17	70	76	1	4	17	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
169618--169743	7	17.4	7	68	17	55	75	2	4	17	1.08
169636--169757	65	1.9	65	83	6	158	73	2	6	17	1.15
169626--169790	65	2.6	62	76	13	142	73	1	6	17	1.13
169634--169678	11	4.4	11	75	16	51	80	0	2	17	0.82
171487--172684	85	14.1	85	84	2	1325	24	18	21	35	1.95
171487--172684	171	7.0	170	84	2	1363	24	18	21	35	1.95
171555--172676	511	2.2	506	85	2	1478	24	18	21	35	1.95
173892--174069	88	2.0	86	92	2	293	31	21	16	30	1.96
176670--176731	3	20.0	3	86	6	88	67	1	1	29	1.09
176656--176733	22	3.4	23	80	10	97	69	1	2	26	1.09
176991--177033	12	3.4	12	80	20	52	81	0	4	13	0.84
177018--177096	35	2.3	34	82	10	90	77	5	2	15	1.05
181883--181915	16	2.0	17	94	5	59	24	15	0	60	1.35
182117--182173	29	2.0	29	96	0	105	29	26	33	10	1.90
185876--185940	24	2.7	25	81	11	82	40	16	18	24	1.91
185822--185985	24	6.8	22	67	12	58	37	18	18	25	1.93
192283--192335	27	2.0	27	100	0	106	71	9	11	7	1.30
193444--193531	17	4.6	17	70	21	59	47	4	34	13	1.63
193654--193840	83	2.3	83	81	7	227	36	17	14	31	1.91
197150--197174	12	2.1	12	100	0	50	0	16	0	84	0.63
197145--197182	20	1.9	20	88	0	58	0	18	0	81	0.69
197137--197183	14	3.4	14	79	5	51	2	17	0	80	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
206963--206991	15	2.0	15	93	6	51	62	0	6	31	1.22
207381--207530	29	5.2	29	98	0	282	24	23	16	35	1.95
208356--208396	3	13.7	3	89	0	55	58	0	7	34	1.26
210051--210077	2	13.5	2	100	0	54	48	0	0	51	1.00
210828--210855	13	2.2	13	100	0	56	53	0	0	46	1.00
218062--218094	2	16.5	2	100	0	66	51	0	0	48	1.00
218105--218151	16	3.0	16	78	12	53	40	0	0	59	0.97
218253--218305	27	2.0	27	96	0	97	45	3	1	49	1.31
218258--218313	14	4.1	14	73	17	55	48	3	1	46	1.30
219318--219346	3	9.7	3	100	0	58	0	31	0	68	0.89

Tables:   1   2