genome.fa.s7871.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007871.1 Hibiscus syriacus cultivar Beakdansim tig00110246_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  163418

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2286--2329	20	2.2	20	100	0	88	59	4	4	31	1.38
7622--7895	5	54.6	5	70	21	134	54	4	2	39	1.34
7640--7965	7	43.4	7	70	22	170	52	5	2	39	1.38
7636--7844	40	5.4	40	76	18	187	53	4	1	40	1.33
7632--7958	12	26.7	12	71	22	136	52	5	2	39	1.38
7632--7880	25	9.7	25	73	20	153	53	4	2	39	1.34
7632--7978	25	14.1	25	68	20	143	52	5	2	39	1.38
13540--13585	2	23.0	2	100	0	92	50	0	0	50	1.00
13607--13635	14	2.1	14	100	0	58	41	0	6	51	1.28
19875--19917	21	2.1	21	87	12	63	6	16	16	60	1.56
20313--20584	5	53.6	5	79	15	301	55	2	1	41	1.21
20310--20654	15	21.5	16	78	15	137	53	3	1	41	1.28
20310--20612	10	33.2	9	78	16	217	54	2	1	41	1.24
24335--24460	63	2.0	63	84	3	164	39	11	22	26	1.88
26939--26984	24	2.0	23	83	12	58	19	21	36	21	1.95
27295--27329	3	12.0	3	93	6	63	31	0	0	68	0.90
30313--30352	20	2.0	20	90	0	62	40	10	15	35	1.80
30317--30360	20	2.2	20	83	0	52	38	9	13	38	1.77
31014--31057	20	2.1	21	91	4	72	36	9	20	34	1.84
31014--31069	21	2.7	21	86	8	71	35	10	19	33	1.87
37856--37894	18	2.1	19	85	4	53	23	7	5	64	1.40
43480--43518	18	2.1	19	85	4	53	23	5	5	66	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47830--47900	30	2.4	30	76	9	72	35	11	14	39	1.81
55936--55976	18	2.3	18	100	0	82	29	0	19	51	1.47
61002--61060	30	2.0	30	89	0	91	30	13	35	20	1.91
65057--65427	152	2.4	152	83	3	420	51	6	15	26	1.67
71565--71606	15	2.8	15	100	0	84	30	0	4	64	1.14
72737--72782	20	2.3	19	85	14	58	52	8	13	26	1.69
82947--82992	20	2.3	19	85	14	58	52	8	13	26	1.69
89412--89450	14	2.9	13	81	7	51	20	7	2	69	1.26
89414--89452	21	1.9	20	89	5	60	15	7	2	74	1.15
89413--89459	21	2.3	19	82	13	58	17	8	2	72	1.19
101765--101798	18	1.9	18	88	5	52	29	2	2	64	1.22
107175--107215	7	5.9	7	94	0	73	41	17	14	26	1.88
108169--108206	20	1.9	20	84	10	51	55	2	13	28	1.51
108880--108937	20	2.7	20	86	10	71	27	24	18	29	1.98
109938--109973	2	18.0	2	100	0	72	50	0	0	50	1.00
112305--112357	18	2.9	18	94	0	88	28	33	18	18	1.95
112659--112726	20	3.4	20	93	0	118	38	23	4	33	1.75
113751--113794	10	4.3	10	85	5	61	38	15	9	36	1.80
113751--113794	21	2.2	20	87	4	61	38	15	9	36	1.80
114808--115074	86	3.1	85	82	2	311	25	18	21	34	1.96
115130--115357	121	1.9	121	91	0	375	22	16	25	35	1.95
120369--120401	16	2.1	16	94	5	59	78	0	6	15	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123397--123439	22	2.0	21	86	8	61	74	2	0	23	0.93
124810--124856	12	4.0	12	75	5	51	38	4	0	57	1.18
124850--124895	24	1.9	24	82	8	58	54	0	0	45	0.99
124870--124902	13	2.4	14	90	5	50	54	3	0	42	1.15
125263--125316	25	2.2	25	83	3	65	25	14	12	46	1.81
125967--126039	38	1.9	38	94	2	130	41	36	9	12	1.75
125973--126051	37	2.1	38	88	2	115	45	34	7	12	1.71
126890--126918	10	2.9	10	100	0	58	72	0	0	27	0.85
155146--155195	25	2.0	24	81	18	57	30	18	10	42	1.82
160320--160359	21	1.9	21	85	10	55	35	12	2	50	1.54
161827--161862	2	18.5	2	94	5	65	47	0	0	52	1.00

Tables:   1

The End!