Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007872.1 Hibiscus syriacus cultivar Beakdansim tig00110247_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 853105
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 4
Found at i:729463 original size:225 final size:223
Alignment explanation
Indices: 729129--729736 Score: 734
Period size: 225 Copynumber: 2.7 Consensus size: 223
729119 AACATAACAA
* * * ** * *
729129 GTTAATTACCGGAAACATTATCAACCATAATAACATAACAAATAACACTTATGCAATATAATATA
1 GTTAATTA-CTGAAACATTATCAACCATAATAACATAACAAGTAACGCTTATTTAATGTAATATG
* * * * * *
729194 TAGCGTCTTTTTAAAGCTGATGAGGTCTTAAAAATCCGACGATAACAAAATAGGTTAATTACTTG
65 TAGAGTCTATTTAAAGTTGATGAGATCTT-AAAATTCGACGATAACAAAATAGGTTAATTACTTA
** *
729259 ATTTGTTATCAATATTATCAACATATTAGGTAGGGCCTAAAATATTACCAAAGTTTAA-TCTGAT
129 ATTTGTTATCAATATTATCAACATATTAGGTAGCACCTAAAATATTACCAAAATTTAAGT-TGAT
* ** * *
729323 GGAGTTTTAGAAA-TCTGACGACGATAAAATAG
193 AG-GCCTTAGAAATTC-GACGACAACAAAATAG
*
729355 GTTAATTACTGAAACATTATCAACCATAATAACATAACAAGTAACGCTTATTTAATGTAATATGC
1 GTTAATTACTGAAACATTATCAACCATAATAACATAACAAGTAACGCTTATTTAATGTAATATGT
* * * * *
729420 AGTGTCTGTTTAAAGTTGATGAGACCTTAGAAATTCGACGATAAAAAAATAGGTTAATTACATAA
66 AGAGTCTATTTAAAGTTGATGAGATCTTA-AAATTCGACGATAACAAAATAGGTTAATTACTTAA
729485 TTTGTTATCAATATTATCAACATATTAGGTAGCACCTAAAATATTACCAAAATTTAAGTTGATAG
130 TTTGTTATCAATATTATCAACATATTAGGTAGCACCTAAAATATTACCAAAATTTAAGTTGATAG
* * * *
729550 GCCTTATAAATTCGATGATAACAAAATAT
195 GCCTTAGAAATTCGACGACAACAAAATAG
* * * *
729579 GTTAATTACTGAAAACATTATCAACCATAATAACATAATATGTAGCGCTTACTTAATGTAATATG
1 GTTAATTACTG-AAACATTATCAACCATAATAACATAACAAGTAACGCTTATTTAATGTAATATG
* * * * * *
729644 TAGAGTCTATTTGAAGTTGACGGGATATTAAAAATCTGACGATAACAAAATAGATTAATTACTTA
65 TAGAGTCTATTTAAAGTTGATGAGATCTTAAAATTC-GACGATAACAAAATAGGTTAATTACTTA
* * *
729709 ATTTATTTTCAATATTATCAATATATTA
129 ATTTGTTATCAATATTATCAACATATTA
729737 CTGAATACCT
Statistics
Matches: 329, Mismatches: 48, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
224 35 0.11
225 285 0.87
226 9 0.03
ACGTcount: A:0.41, C:0.12, G:0.13, T:0.33
Consensus pattern (223 bp):
GTTAATTACTGAAACATTATCAACCATAATAACATAACAAGTAACGCTTATTTAATGTAATATGT
AGAGTCTATTTAAAGTTGATGAGATCTTAAAATTCGACGATAACAAAATAGGTTAATTACTTAAT
TTGTTATCAATATTATCAACATATTAGGTAGCACCTAAAATATTACCAAAATTTAAGTTGATAGG
CCTTAGAAATTCGACGACAACAAAATAG
Found at i:729833 original size:23 final size:23
Alignment explanation
Indices: 729801--729859 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 23
729791 CAATAGCTAG
* *
729801 TTTAAAGTAATAGGTAG-GATTTA
1 TTTAACGTAATAGGTAGAGA-CTA
729824 TTTAACGTAATAGGTAGAGACTA
1 TTTAACGTAATAGGTAGAGACTA
*
729847 TTTAACATAATAG
1 TTTAACGTAATAG
729860 ATAACGTCTA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
23 30 0.94
24 2 0.06
ACGTcount: A:0.41, C:0.05, G:0.19, T:0.36
Consensus pattern (23 bp):
TTTAACGTAATAGGTAGAGACTA
Found at i:730007 original size:74 final size:75
Alignment explanation
Indices: 729847--730028 Score: 249
Period size: 74 Copynumber: 2.4 Consensus size: 75
729837 GTAGAGACTA
* * * *
729847 TTTAACATAATAGATAACGTCTATTTTATTTTATCTTTTACATTATTATTAACCTTTAAACAAAT
1 TTTAACATAATAGATAACGTCTATTTTATTTTATCTTTGACATTATTAATAACCTTCAAACAAAA
729912 CAATAGCTAG
66 CAATAGCTAG
** *
729922 TTTAATGTAATAGATAACGCCTATTTTATTTTATC-TTGACATTATTAATAACCTTCAAACAAAA
1 TTTAACATAATAGATAACGTCTATTTTATTTTATCTTTGACATTATTAATAACCTTCAAACAAAA
** *
729986 CGGTAGGTAG
66 CAATAGCTAG
* *
729996 TTTAACATAATAGGTATCGTCTATTTTATTTTA
1 TTTAACATAATAGATAACGTCTATTTTATTTTA
730029 ATTGGTTAAG
Statistics
Matches: 92, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
74 60 0.65
75 32 0.35
ACGTcount: A:0.36, C:0.13, G:0.09, T:0.43
Consensus pattern (75 bp):
TTTAACATAATAGATAACGTCTATTTTATTTTATCTTTGACATTATTAATAACCTTCAAACAAAA
CAATAGCTAG
Found at i:730334 original size:2 final size:2
Alignment explanation
Indices: 730323--730352 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
730313 ATAATAAATT
730323 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
730353 TTATTATGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:734561 original size:31 final size:31
Alignment explanation
Indices: 734513--734580 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
734503 TTAAAGGAGA
* * * *
734513 ATAGTCTTTAACGTTATCGATTTGTTTGATT
1 ATAGTCTCTAACATTATCGATTCGTTCGATT
734544 ATAGTCTCTAACATTATCGATTCGTTCGATT
1 ATAGTCTCTAACATTATCGATTCGTTCGATT
*
734575 TTAGTC
1 ATAGTC
734581 ATTTGATCGT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.24, C:0.15, G:0.15, T:0.47
Consensus pattern (31 bp):
ATAGTCTCTAACATTATCGATTCGTTCGATT
Found at i:739809 original size:16 final size:17
Alignment explanation
Indices: 739790--739827 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
739780 CGTCTTTTTT
739790 AAAAACAATTTTAAGA-
1 AAAAACAATTTTAAGAC
* *
739806 AAAATCATTTTTAAGAC
1 AAAAACAATTTTAAGAC
739823 AAAAA
1 AAAAA
739828 ACTGATATGT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.61, C:0.08, G:0.05, T:0.26
Consensus pattern (17 bp):
AAAAACAATTTTAAGAC
Found at i:740102 original size:30 final size:30
Alignment explanation
Indices: 740059--740198 Score: 111
Period size: 30 Copynumber: 4.6 Consensus size: 30
740049 AGAAATCTTG
* *
740059 AAAACATGAACTTAAAGGATTAAAATGGCA
1 AAAACATAAACTTAAAGGATTAAAATAGCA
* * * * *
740089 AAAATATAAACTTAAAAGTTTAAAAACAGCG
1 AAAACATAAACTTAAAGGATT-AAAATAGCA
* * *
740120 AAAACAT-AACTTTAAGAGACTAAAAATAACA
1 AAAACATAAACTTAAAG-GA-TTAAAATAGCA
* *
740151 AAAACAGAAATTTAAAGGATTAAAATAGCA
1 AAAACATAAACTTAAAGGATTAAAATAGCA
* * *
740181 AAAATAAAAAATTAAAGG
1 AAAACATAAACTTAAAGG
740199 GTTGAACAAT
Statistics
Matches: 83, Mismatches: 23, Indels: 8
0.73 0.20 0.07
Matches are distributed among these distances:
30 48 0.58
31 27 0.33
32 8 0.10
ACGTcount: A:0.60, C:0.09, G:0.11, T:0.20
Consensus pattern (30 bp):
AAAACATAAACTTAAAGGATTAAAATAGCA
Found at i:742272 original size:20 final size:20
Alignment explanation
Indices: 742249--742321 Score: 110
Period size: 20 Copynumber: 3.6 Consensus size: 20
742239 GCAGCCTTGG
* *
742249 TGCATGGATGCACAGCAGGG
1 TGCATCGATGCACAGCAGGA
*
742269 TGCATGGATGCACAGCAGGA
1 TGCATCGATGCACAGCAGGA
*
742289 TGCATCGATGCACAGAAGGA
1 TGCATCGATGCACAGCAGGA
742309 TGCATCGATGCAC
1 TGCATCGATGCAC
742322 TAATTGTATT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 50 1.00
ACGTcount: A:0.29, C:0.22, G:0.33, T:0.16
Consensus pattern (20 bp):
TGCATCGATGCACAGCAGGA
Found at i:742389 original size:22 final size:23
Alignment explanation
Indices: 742356--742398 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
742346 ATGGATGCAC
742356 TGCATGGTGCATCGATGCACTAG
1 TGCATGGTGCATCGATGCACTAG
*
742379 TGCA-GGTGCATGGATGCACT
1 TGCATGGTGCATCGATGCACT
742399 GCAAGGGTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.21, C:0.21, G:0.33, T:0.26
Consensus pattern (23 bp):
TGCATGGTGCATCGATGCACTAG
Found at i:743039 original size:43 final size:43
Alignment explanation
Indices: 742992--743126 Score: 103
Period size: 43 Copynumber: 3.1 Consensus size: 43
742982 GTTCCTACGT
*
742992 GATGAGGAAGGATTGTTATCAAGGGTTGACACTGCTCATATGC
1 GATGAGGAAGGATCGTTATCAAGGGTTGACACTGCTCATATGC
**** * * * * * * *
743035 GATGAGTCTTGACCG-TAT-AAGGGTGATAACACAGTTCCTACGT
1 GATGAGGAAGGATCGTTATCAAGGGT--TGACACTGCTCATATGC
* * *
743078 GATGAGGACGGCTGGTTATCAAGGGTTGACACTGCTCATATGC
1 GATGAGGAAGGATCGTTATCAAGGGTTGACACTGCTCATATGC
743121 GATGAG
1 GATGAG
743127 TCTTGGCCAG
Statistics
Matches: 63, Mismatches: 25, Indels: 8
0.66 0.26 0.08
Matches are distributed among these distances:
41 6 0.10
42 3 0.05
43 45 0.71
44 3 0.05
45 6 0.10
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (43 bp):
GATGAGGAAGGATCGTTATCAAGGGTTGACACTGCTCATATGC
Found at i:743081 original size:86 final size:86
Alignment explanation
Indices: 742936--743131 Score: 320
Period size: 86 Copynumber: 2.3 Consensus size: 86
742926 AGGGGATGAT
* **
742936 ACTGCTCATATGTGATGAGTCTTGACCATATAAAGGTGATAACATGGTTCCTACGTGATGAGGAA
1 ACTGCTCATATGCGATGAGTCTTGACCATATAAAGGTGATAACACAGTTCCTACGTGATGAGGAA
*
743001 GGATTGTTATCAAGGGTTGAC
66 GGATGGTTATCAAGGGTTGAC
* * *
743022 ACTGCTCATATGCGATGAGTCTTGACCGTATAAGGGTGATAACACAGTTCCTACGTGATGAGGAC
1 ACTGCTCATATGCGATGAGTCTTGACCATATAAAGGTGATAACACAGTTCCTACGTGATGAGGAA
*
743087 GGCTGGTTATCAAGGGTTGAC
66 GGATGGTTATCAAGGGTTGAC
743108 ACTGCTCATATGCGATGAGTCTTG
1 ACTGCTCATATGCGATGAGTCTTG
743132 GCCAGGGAAT
Statistics
Matches: 102, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
86 102 1.00
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (86 bp):
ACTGCTCATATGCGATGAGTCTTGACCATATAAAGGTGATAACACAGTTCCTACGTGATGAGGAA
GGATGGTTATCAAGGGTTGAC
Found at i:744294 original size:14 final size:14
Alignment explanation
Indices: 744275--744306 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
744265 TGCTTCATGT
744275 ATGTATGTTGATGG
1 ATGTATGTTGATGG
*
744289 ATGTATGTTGATGT
1 ATGTATGTTGATGG
744303 ATGT
1 ATGT
744307 CTTGATCATG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.22, C:0.00, G:0.31, T:0.47
Consensus pattern (14 bp):
ATGTATGTTGATGG
Found at i:748406 original size:45 final size:43
Alignment explanation
Indices: 748296--748406 Score: 145
Period size: 45 Copynumber: 2.6 Consensus size: 43
748286 TACCACGGCC
748296 TCCTCCACCACCTGTGTATTCACCTCCCCCGCCACCAACATCA
1 TCCTCCACCACCTGTGTATTCACCTCCCCCGCCACCAACATCA
* * *
748339 -CCTCCACCACCCGTGTACTCACCTCCCCCGCCGCCACCACCAT-A
1 TCCTCCACCACCTGTGTATTCACCT--CCC-CCGCCACCAACATCA
*
748383 TCCTCCACCACCTGAGTATTCACC
1 TCCTCCACCACCTGTGTATTCACC
748407 ACCTCCACCT
Statistics
Matches: 58, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
42 22 0.38
44 4 0.07
45 32 0.55
ACGTcount: A:0.20, C:0.53, G:0.08, T:0.19
Consensus pattern (43 bp):
TCCTCCACCACCTGTGTATTCACCTCCCCCGCCACCAACATCA
Found at i:748421 original size:45 final size:46
Alignment explanation
Indices: 748296--748422 Score: 138
Period size: 45 Copynumber: 2.9 Consensus size: 46
748286 TACCACGGCC
*
748296 TCCTCCACCACCTGTGTATT---CACCTCCCCCGCCACCAACATCA
1 TCCTCCACCACCTGTGTATTCACCACCTCCACCGCCACCAACATCA
* * * * * *
748339 -CCTCCACCACCCGTGTACTCACCTCCCCCGCCGCCACCACCAT-A
1 TCCTCCACCACCTGTGTATTCACCACCTCCACCGCCACCAACATCA
* *
748383 TCCTCCACCACCTGAGTATTCACCACCTCCACCTCCACCA
1 TCCTCCACCACCTGTGTATTCACCACCTCCACCGCCACCA
748423 TTACCTCCTC
Statistics
Matches: 67, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
42 17 0.25
44 1 0.01
45 49 0.73
ACGTcount: A:0.20, C:0.54, G:0.07, T:0.18
Consensus pattern (46 bp):
TCCTCCACCACCTGTGTATTCACCACCTCCACCGCCACCAACATCA
Found at i:748430 original size:42 final size:42
Alignment explanation
Indices: 748297--748430 Score: 144
Period size: 42 Copynumber: 3.1 Consensus size: 42
748287 ACCACGGCCT
* *
748297 CCTCCACCACCTGTGTATTCACCTCCCCCGCCACCAACATCA
1 CCTCCACCACCTGTGTATTCACCTCCCCCGCCACCACCATTA
* *
748339 CCTCCACCACCCGTGTACTCACCTCCCCCGCCGCCACCACCA-TA
1 CCTCCACCACCTGTGTATTCACCT--CCC-CCGCCACCACCATTA
* * * * *
748383 TCCTCCACCACCTGAGTATTCACCACCTCCACCTCCACCATTA
1 -CCTCCACCACCTGTGTATTCACCTCCCCCGCCACCACCATTA
748426 CCTCC
1 CCTCC
748431 TCCTCCGCCT
Statistics
Matches: 76, Mismatches: 11, Indels: 10
0.78 0.11 0.10
Matches are distributed among these distances:
42 37 0.49
43 4 0.05
44 4 0.05
45 31 0.41
ACGTcount: A:0.20, C:0.54, G:0.07, T:0.19
Consensus pattern (42 bp):
CCTCCACCACCTGTGTATTCACCTCCCCCGCCACCACCATTA
Found at i:748667 original size:21 final size:21
Alignment explanation
Indices: 748629--748668 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
748619 CACCTCCGGT
*
748629 ACATTCTCCACCACCACCACC
1 ACATTCACCACCACCACCACC
* *
748650 ACATTCACCTCCAGCACCA
1 ACATTCACCACCACCACCA
748669 ATCTATCCGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.30, C:0.53, G:0.03, T:0.15
Consensus pattern (21 bp):
ACATTCACCACCACCACCACC
Found at i:758471 original size:30 final size:30
Alignment explanation
Indices: 758437--758536 Score: 74
Period size: 30 Copynumber: 3.1 Consensus size: 30
758427 AGAAGTTAGT
758437 TGGGATGCTCTTCTATGTTTCTTAGCCATG
1 TGGGATGCTCTTCTATGTTTCTTAGCCATG
* * * * * *
758467 TGGGATTGTTTTATTCTCATATTTTCTCTTTAGACTTT
1 TGGGA-TG--CT-CT-TC-TATGTT-TC-TTAGCCATG
758505 TGGGATGCTCTTCTATGTTTCTTAGCCATG
1 TGGGATGCTCTTCTATGTTTCTTAGCCATG
758535 TG
1 TG
758537 TGATTGTTTT
Statistics
Matches: 50, Mismatches: 12, Indels: 16
0.64 0.15 0.21
Matches are distributed among these distances:
30 13 0.26
31 4 0.08
32 5 0.10
33 3 0.06
34 2 0.04
35 3 0.06
36 5 0.10
37 4 0.08
38 11 0.22
ACGTcount: A:0.14, C:0.17, G:0.20, T:0.49
Consensus pattern (30 bp):
TGGGATGCTCTTCTATGTTTCTTAGCCATG
Found at i:760280 original size:21 final size:22
Alignment explanation
Indices: 760255--760306 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
760245 ACACTTTACA
*
760255 ATATAACCACTACCTATTACATT
1 ATATAAACA-TACCTATTACATT
760278 ATATAAACGATACCTATTACATT
1 ATATAAAC-ATACCTATTACATT
760301 ATATAA
1 ATATAA
760307 GGGCTACCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (22 bp):
ATATAAACATACCTATTACATT
Found at i:760291 original size:23 final size:23
Alignment explanation
Indices: 760265--760327 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
760255 ATATAACCAC
760265 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
760288 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
760311 TACCTATTACATCATAT
1 TACCTATTACATTATAT
760328 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:760785 original size:39 final size:39
Alignment explanation
Indices: 760731--760817 Score: 147
Period size: 39 Copynumber: 2.2 Consensus size: 39
760721 TCAAGTTGTA
* *
760731 GATTTTGATTTCCTTTTGCTTGGCATCATATGAGATTTG
1 GATTTTGATTTCCTTTTGCTGGGCACCATATGAGATTTG
*
760770 GATTTTGATTTCCTTTTGCTGGGCACCATATGAGCTTTG
1 GATTTTGATTTCCTTTTGCTGGGCACCATATGAGATTTG
760809 GATTTTGAT
1 GATTTTGAT
760818 GAGCATCAGA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.17, C:0.14, G:0.22, T:0.47
Consensus pattern (39 bp):
GATTTTGATTTCCTTTTGCTGGGCACCATATGAGATTTG
Found at i:761099 original size:18 final size:18
Alignment explanation
Indices: 761076--761112 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
761066 CGAAATATAT
761076 ATTGAAATTCAAACTCAA
1 ATTGAAATTCAAACTCAA
* *
761094 ATTGAAATTTAAATTCAA
1 ATTGAAATTCAAACTCAA
761112 A
1 A
761113 CTCCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATTGAAATTCAAACTCAA
Found at i:761389 original size:25 final size:25
Alignment explanation
Indices: 761361--761411 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
761351 TTAATCCAAA
*
761361 TAATGTACCCATAACAATGTTCAAT
1 TAATGTACCCACAACAATGTTCAAT
*
761386 TAATGTACCCACAACAATGTTTAAT
1 TAATGTACCCACAACAATGTTCAAT
761411 T
1 T
761412 GATTTGTTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (25 bp):
TAATGTACCCACAACAATGTTCAAT
Found at i:761703 original size:21 final size:22
Alignment explanation
Indices: 761678--761729 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
761668 ACACTTTACA
*
761678 ATATAACCACTACCTATTACATT
1 ATATAAACA-TACCTATTACATT
761701 ATATAAACGATACCTATTACATT
1 ATATAAAC-ATACCTATTACATT
761724 ATATAA
1 ATATAA
761730 GGGCTACCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (22 bp):
ATATAAACATACCTATTACATT
Found at i:761714 original size:23 final size:23
Alignment explanation
Indices: 761688--761750 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
761678 ATATAACCAC
761688 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
761711 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
761734 TACCTATTACATCATAT
1 TACCTATTACATTATAT
761751 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:762134 original size:21 final size:22
Alignment explanation
Indices: 762109--762160 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
762099 ACACTTTACA
*
762109 ATATAACCACTACCTATTACATT
1 ATATAAACA-TACCTATTACATT
762132 ATATAAACGATACCTATTACATT
1 ATATAAAC-ATACCTATTACATT
762155 ATATAA
1 ATATAA
762161 GGGCTACCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (22 bp):
ATATAAACATACCTATTACATT
Found at i:762145 original size:23 final size:23
Alignment explanation
Indices: 762119--762181 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
762109 ATATAACCAC
762119 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
762142 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
762165 TACCTATTACATCATAT
1 TACCTATTACATTATAT
762182 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:765061 original size:184 final size:184
Alignment explanation
Indices: 764752--765095 Score: 589
Period size: 184 Copynumber: 1.9 Consensus size: 184
764742 TTCAAATTAC
* *
764752 CGACACTTTTTTAAATGGTATCGACACATTTTTATTCCAATCTGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTAAATCGTATCGACACATTTTTATTCCAATATGGACATAAAGTACCGACACAAT
* *
764817 ATTATAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGGTT
66 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
*
764882 ATATTACAAAATTATCTATTACATTATAATTATGAGTTCCGATGTGTAAAATGT
131 ATATTACAAAATTACCTATTACATTATAATTATGAGTTCCGATGTGTAAAATGT
*
764936 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTAAATCGTATCGACACATTTTTATTCCAATATGGACATAAAGTACCGACACAAT
*
765001 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAGACCGGTATATTTATACCGGTT
66 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
* * **
765066 ATATTGCAAATTTACCTATTTTATTATAAT
131 ATATTACAAAATTACCTATTACATTATAAT
765096 ATGTTGAAAG
Statistics
Matches: 149, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
184 149 1.00
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.36
Consensus pattern (184 bp):
CGACACTTTTTTAAATCGTATCGACACATTTTTATTCCAATATGGACATAAAGTACCGACACAAT
ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
ATATTACAAAATTACCTATTACATTATAATTATGAGTTCCGATGTGTAAAATGT
Found at i:766569 original size:3 final size:3
Alignment explanation
Indices: 766561--766623 Score: 63
Period size: 3 Copynumber: 21.0 Consensus size: 3
766551 ACTTGTTTGG
* * * * *
766561 ATC ATC ATC ATC ATC ATC ATC ATC GTC ATC ATC TTC ATC GTC AGC TTC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
* *
766609 ATC GTC ATC TTC ATC
1 ATC ATC ATC ATC ATC
766624 GTCAGCTTCA
Statistics
Matches: 46, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.24, C:0.33, G:0.06, T:0.37
Consensus pattern (3 bp):
ATC
Found at i:766578 original size:12 final size:12
Alignment explanation
Indices: 766561--766635 Score: 78
Period size: 12 Copynumber: 6.2 Consensus size: 12
766551 ACTTGTTTGG
*
766561 ATCATCATCATC
1 ATCATCATCTTC
*
766573 ATCATCATCATC
1 ATCATCATCTTC
*
766585 GTCATCATCTTC
1 ATCATCATCTTC
* *
766597 ATCGTCAGCTTC
1 ATCATCATCTTC
*
766609 ATCGTCATCTTC
1 ATCATCATCTTC
* *
766621 ATCGTCAGCTTC
1 ATCATCATCTTC
766633 ATC
1 ATC
766636 TTCTGCGACC
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 56 1.00
ACGTcount: A:0.23, C:0.33, G:0.08, T:0.36
Consensus pattern (12 bp):
ATCATCATCTTC
Found at i:766624 original size:24 final size:24
Alignment explanation
Indices: 766589--766635 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
766579 ATCATCGTCA
766589 TCATCTTCATCGTCAGCTTCATCG
1 TCATCTTCATCGTCAGCTTCATCG
766613 TCATCTTCATCGTCAGCTTCATC
1 TCATCTTCATCGTCAGCTTCATC
766636 TTCTGCGACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.17, C:0.34, G:0.11, T:0.38
Consensus pattern (24 bp):
TCATCTTCATCGTCAGCTTCATCG
Found at i:766638 original size:6 final size:6
Alignment explanation
Indices: 766565--766638 Score: 58
Period size: 6 Copynumber: 12.3 Consensus size: 6
766555 GTTTGGATCA
* * * * * * * *
766565 TCATCA TCATCA TCATCA TCGTCA TCATCT TCATCG TCAGCT TCATCG
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT
* *
766613 TCATCT TCATCG TCAGCT TCATCT TC
1 TCATCT TCATCT TCATCT TCATCT TC
766639 TGCGACCGCT
Statistics
Matches: 55, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
6 55 1.00
ACGTcount: A:0.20, C:0.34, G:0.08, T:0.38
Consensus pattern (6 bp):
TCATCT
Found at i:768621 original size:199 final size:199
Alignment explanation
Indices: 768093--769454 Score: 2517
Period size: 199 Copynumber: 6.9 Consensus size: 199
768083 TTTAAATTAG
768093 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
768158 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATAC-TTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
768222 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGAAA
768287 AAAA
196 AAAA
768291 TATCGACACAAACTATATTA-TGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
768355 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
768420 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTCATTCATTCTGGGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGAAA
768485 AAAA
196 AAAA
*
768489 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAATCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
768554 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
768619 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCT-GGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGAAA
768683 AAAA
196 AAAA
* *
768687 TATCGATACAAACTATATTAGTGTCGACACATTATTTAGACATATCCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
768752 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
768817 CGACACTTTTTATATATGGATCGACACTTTATGGGTGTACCTTGTTTTCCATTCATTCTGGGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGAAA
768882 AAAA
196 AAAA
*
768886 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATCCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
768951 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
* *
769016 CGACACTTTTTATATATAGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGGAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGAAA
769081 AAAA
196 AAAA
769085 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
769150 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
769215 CGACAC-TTTT-TATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCT-GG-AA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGAAA
769276 AAAA
196 AAAA
*
769280 TATCGACACAAACTATA-TAGTGTCGACACATTATTTAGACATATCCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
* *
769344 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGG-GTTCGATGATTTTGGGA
* *
769409 TTGACACTTTTT-TATATGGATCGACACTTTATGGGTGCACCCTGTT
130 TCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTT
769455 GGCCATATTG
Statistics
Matches: 1139, Mismatches: 20, Indels: 12
0.97 0.02 0.01
Matches are distributed among these distances:
194 93 0.08
195 44 0.04
196 40 0.04
197 130 0.11
198 328 0.29
199 504 0.44
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (199 bp):
TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGAAA
AAAA
Found at i:768825 original size:397 final size:398
Alignment explanation
Indices: 768093--769454 Score: 2517
Period size: 397 Copynumber: 3.4 Consensus size: 398
768083 TTTAAATTAG
*
768093 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATCCTCTCATAAAACCGGTATA
768158 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATAC-TTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
768222 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGGAAA
768287 AAAATATCGACACAAACTATATTA-TGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
196 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
768351 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
261 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
*
768416 GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTCATTCATTCTGG
326 GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGG
768481 GAAAAAAA
391 GAAAAAAA
* *
768489 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAATCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATCCTCTCATAAAACCGGTATA
768554 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
768619 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCT-GGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGGAAA
* *
768683 AAAATATCGATACAAACTATATTAGTGTCGACACATTATTTAGACATATCCTCTCATAAAACCGG
196 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
768748 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
261 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
*
768813 GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGTACCTTGTTTTCCATTCATTCTGG
326 GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGG
768878 GAAAAAAA
391 GAAAAAAA
768886 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATCCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATCCTCTCATAAAACCGGTATA
768951 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
* * *
769016 CGACACTTTTTATATATAGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGGAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGGAAA
769081 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
196 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
769146 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
261 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
*
769211 GGATCGACAC-TTTT-TATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCT-G
326 GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGG
769273 G-AAAAAA
391 GAAAAAAA
769280 TATCGACACAAACTATA-TAGTGTCGACACATTATTTAGACATATCCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATCCTCTCATAAAACCGGTATA
* *
769344 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGG-GTTCGATGATTTTGGGA
*
769409 TTGACACTTTTT-TATATGGATCGACACTTTATGGGTGCACCCTGTT
130 TCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTT
769455 GGCCATATTG
Statistics
Matches: 942, Mismatches: 20, Indels: 11
0.97 0.02 0.01
Matches are distributed among these distances:
393 126 0.13
394 49 0.05
395 2 0.00
396 178 0.19
397 445 0.47
398 142 0.15
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (398 bp):
TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATCCTCTCATAAAACCGGTATA
ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGGAAA
AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGG
GAAAAAAA
Found at i:769619 original size:19 final size:19
Alignment explanation
Indices: 769576--769620 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
769566 ATTCACATAC
769576 AAAAA-TATAAATCGTATA
1 AAAAATTATAAATCGTATA
* * *
769594 CATAATTATAAATCTTATA
1 AAAAATTATAAATCGTATA
769613 AAAAATTA
1 AAAAATTA
769621 ACTCGACATT
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
18 3 0.14
19 18 0.86
ACGTcount: A:0.58, C:0.07, G:0.02, T:0.33
Consensus pattern (19 bp):
AAAAATTATAAATCGTATA
Found at i:771452 original size:33 final size:33
Alignment explanation
Indices: 771415--771480 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
771405 CATCTTAATA
*
771415 TCACCCCTTAACACCGAAACTTCTTTCACCACT
1 TCACCCCTCAACACCGAAACTTCTTTCACCACT
***
771448 TCACCCCTCAACACCTCTACTTCTTTCACCACT
1 TCACCCCTCAACACCGAAACTTCTTTCACCACT
771481 CCATCTATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.24, C:0.45, G:0.02, T:0.29
Consensus pattern (33 bp):
TCACCCCTCAACACCGAAACTTCTTTCACCACT
Found at i:773830 original size:19 final size:19
Alignment explanation
Indices: 773785--773830 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
773775 TCCGGTATCA
773785 TTTTACCGGTTTTATCATT
1 TTTTACCGGTTTTATCATT
*
773804 TTGATACCGG-TTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
773824 TTTTACC
1 TTTTACC
773831 TGTTATATCG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.20, C:0.17, G:0.11, T:0.52
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:773979 original size:20 final size:20
Alignment explanation
Indices: 773954--773995 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
773944 TTTAAATTTG
773954 CCGGTTTTATCAT-TTTGTTA
1 CCGGTTTTATCATATTT-TTA
773974 CCGGTTTTATCATATTTTTA
1 CCGGTTTTATCATATTTTTA
773994 CC
1 CC
773996 TGGTATATCG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 18 0.86
21 3 0.14
ACGTcount: A:0.17, C:0.19, G:0.12, T:0.52
Consensus pattern (20 bp):
CCGGTTTTATCATATTTTTA
Found at i:774490 original size:228 final size:226
Alignment explanation
Indices: 774060--774506 Score: 779
Period size: 228 Copynumber: 2.0 Consensus size: 226
774050 TTAAAACTGC
774060 TTTTAAAGTTATGTAATTTATGTTTCAATTTATTTAATAGTGTTTCATGTTTTCCACCTACAATA
1 TTTTAAAGTTATGTAATTTATGTTTCAATTTATTTAATAGTGTTTCATGTTTTCCACCTACAATA
**
774125 TTAATTAATAATTTAATTTACACAAAATTTTATTTGATTGTTTTGATATTTATAAAATATTATTT
66 TTAATTAATAATTTAATTTACACAAAAAATTATTTGATTGTTTTGATATTTATAAAATATTATTT
* *
774190 AGAATTTAAATTTAACAATATTAACCAAATATAATAATAAATATGTTTTCAACAGTGAAATAAGT
131 AGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATATTTTCAACAGTGAAATAAGT
*
774255 ATGGACACTTTTATAAAAATGATATATACTT
196 ATGGACACTTTTATAAAAAGGATATATACTT
*
774286 TTTTGAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAAT
1 TTTT-AAAGTTATGTAATTTATGTTTCAATTTATTTAATAGTGTTTCATGTTTTCCACCTACAAT
*
774351 ATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTA
65 ATTAA-TTAATAATTTAATTTACACAAAAAATTATTTGATTGTTTTGATA-TTTATAAAATATTA
* *
774416 TTTAGATTTTAAATTTAACAATATTAACTAAAGATAATAATAAATATATTTTC-ACAGTGAAATA
128 TTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATATTTTCAACAGTGAAATA
774480 AGTATGGACACTTTTATAAAAAGGATA
193 AGTATGGACACTTTTATAAAAAGGATA
774507 GATAATTTAC
Statistics
Matches: 209, Mismatches: 9, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
226 4 0.02
227 64 0.31
228 78 0.37
229 63 0.30
ACGTcount: A:0.40, C:0.07, G:0.08, T:0.45
Consensus pattern (226 bp):
TTTTAAAGTTATGTAATTTATGTTTCAATTTATTTAATAGTGTTTCATGTTTTCCACCTACAATA
TTAATTAATAATTTAATTTACACAAAAAATTATTTGATTGTTTTGATATTTATAAAATATTATTT
AGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATATTTTCAACAGTGAAATAAGT
ATGGACACTTTTATAAAAAGGATATATACTT
Found at i:775676 original size:24 final size:24
Alignment explanation
Indices: 775649--775694 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
775639 GATAAAAAGT
* **
775649 ATTAATAAAATATTCATAAATATC
1 ATTAAGAAAATATAAATAAATATC
*
775673 ATTACGAAAATATAAATAAATA
1 ATTAAGAAAATATAAATAAATA
775695 AAAAAATTAC
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.59, C:0.07, G:0.02, T:0.33
Consensus pattern (24 bp):
ATTAAGAAAATATAAATAAATATC
Found at i:775855 original size:21 final size:22
Alignment explanation
Indices: 775816--775890 Score: 65
Period size: 23 Copynumber: 3.6 Consensus size: 22
775806 TAGAGCAAAA
775816 TTAATATATTTATTCATCTAATT
1 TTAATATATTTATTCATCT-ATT
*
775839 TTAATGTATTT-TT-ATCTATT
1 TTAATATATTTATTCATCTATT
775859 TT-ATA-ATTTA---ATCTATT
1 TTAATATATTTATTCATCTATT
*
775876 TGAATATATTATATT
1 TTAATATATT-TATT
775891 ATGTTTAATA
Statistics
Matches: 43, Mismatches: 3, Indels: 13
0.73 0.05 0.22
Matches are distributed among these distances:
17 8 0.19
18 7 0.16
19 5 0.12
20 7 0.16
21 4 0.09
22 2 0.05
23 10 0.23
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.59
Consensus pattern (22 bp):
TTAATATATTTATTCATCTATT
Found at i:776440 original size:59 final size:59
Alignment explanation
Indices: 776315--776478 Score: 136
Period size: 60 Copynumber: 2.7 Consensus size: 59
776305 TGTTTTTTGA
* * * * * *
776315 TACTTGAAATTGGCTTCAAGGTTCAATTTGGCA-CTCAAGTTTCTTTTATGTCTAATTAGG
1 TACTTGAACTTGTCTTTAA-GTTCAATTTGGTACCTGAACTTT-TTTTATGTCTAATTAGG
*
776375 TGCTTGAACTTGTCTTTAAGTTCAATTTGGTACCTGAACTTTTTGTT-TGTCTAATTTA-G
1 TACTTGAACTTGTCTTTAAGTTCAATTTGGTACCTGAACTTTTT-TTATGTCTAA-TTAGG
* ** * * *
776434 TACTTGAACGTGGTCTTTTGGTTTAAATTTGTTACATGAACTTTT
1 TACTTGAAC-TTGTCTTTAAG-TTCAATTTGGTACCTGAACTTTT
776479 CTTAATTTAA
Statistics
Matches: 85, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
59 30 0.35
60 35 0.41
61 20 0.24
ACGTcount: A:0.23, C:0.13, G:0.18, T:0.46
Consensus pattern (59 bp):
TACTTGAACTTGTCTTTAAGTTCAATTTGGTACCTGAACTTTTTTTATGTCTAATTAGG
Found at i:777891 original size:17 final size:18
Alignment explanation
Indices: 777871--777918 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 18
777861 AAGATAAAAG
*
777871 GTAATTAAAATAAACAT-
1 GTAAATAAAATAAACATA
*
777888 GTAAAT-AAAGAAACATA
1 GTAAATAAAATAAACATA
*
777905 GAAAATAAAATAAA
1 GTAAATAAAATAAA
777919 ATAAAATAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
16 9 0.36
17 10 0.40
18 6 0.24
ACGTcount: A:0.67, C:0.04, G:0.08, T:0.21
Consensus pattern (18 bp):
GTAAATAAAATAAACATA
Found at i:777931 original size:4 final size:4
Alignment explanation
Indices: 777907--778080 Score: 57
Period size: 4 Copynumber: 39.8 Consensus size: 4
777897 GAAACATAGA
* *
777907 AAAT AAAAT AAAAT AAAAT AAAT AAAGT AAAC AAAA AAAT AAA- AAA-
1 AAAT -AAAT -AAAT -AAAT AAAT AAA-T AAAT AAAT AAAT AAAT AAAT
* * * *
777953 AGAT AAAT AAAT AACGT GAAT AAAAT ATAAT AAACA AAAT AAA- AAAT
1 AAAT AAAT AAAT AA-AT AAAT -AAAT A-AAT AAA-T AAAT AAAT AAAT
* * * *
778000 GAAGT AAATT AAAT ATAAG ATAAT AATAGT AAGAAT AACAT ATAC ACAAT
1 -AAAT AAA-T AAAT A-AAT A-AAT AA-A-T -A-AAT AA-AT AAAT A-AAT
* *
778050 AAAT AAAT AAAT AAAT AAAT AGAT AGAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
778081 AAACATCATA
Statistics
Matches: 132, Mismatches: 21, Indels: 33
0.71 0.11 0.18
Matches are distributed among these distances:
3 8 0.06
4 68 0.52
5 51 0.39
6 2 0.02
7 2 0.02
8 1 0.01
ACGTcount: A:0.69, C:0.03, G:0.06, T:0.21
Consensus pattern (4 bp):
AAAT
Found at i:777931 original size:14 final size:14
Alignment explanation
Indices: 777906--777996 Score: 66
Period size: 14 Copynumber: 6.6 Consensus size: 14
777896 AGAAACATAG
777906 AAAATAAAATAAAAT
1 AAAATAAAAT-AAAT
777921 AAAAT-AAATAAAGT
1 AAAATAAAATAAA-T
*
777935 -AAACAAAA-AAAT
1 AAAATAAAATAAAT
777947 AAAA-AAAGATAAAT
1 AAAATAAA-ATAAAT
** *
777961 -AAATAACGTGAAT
1 AAAATAAAATAAAT
* *
777974 AAAATATAATAAAC
1 AAAATAAAATAAAT
777988 AAAATAAAA
1 AAAATAAAA
777997 AATGAAGTAA
Statistics
Matches: 59, Mismatches: 10, Indels: 15
0.70 0.12 0.18
Matches are distributed among these distances:
12 4 0.07
13 20 0.34
14 30 0.51
15 5 0.08
ACGTcount: A:0.75, C:0.03, G:0.04, T:0.18
Consensus pattern (14 bp):
AAAATAAAATAAAT
Found at i:777933 original size:36 final size:35
Alignment explanation
Indices: 777889--778007 Score: 111
Period size: 35 Copynumber: 3.4 Consensus size: 35
777879 AATAAACATG
*
777889 TAAATAAAG-AAACATAGAAAATAAAATAAA-ATAAAA
1 TAAATAAAGTAAACA-AAAAAATAAAA-AAAGAT-AAA
777925 TAAATAAAGTAAACAAAAAAATAAAAAAAGATAAA
1 TAAATAAAGTAAACAAAAAAATAAAAAAAGATAAA
* * * *
777960 TAAATAACGTGAATAAAATATAATAAACAAA-ATAAA
1 TAAATAAAGTAAACAAAA-A-AATAAAAAAAGATAAA
*
777996 -AAATGAAGTAAA
1 TAAATAAAGTAAA
778008 TTAAATATAA
Statistics
Matches: 71, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
35 30 0.42
36 27 0.38
37 14 0.20
ACGTcount: A:0.72, C:0.03, G:0.07, T:0.18
Consensus pattern (35 bp):
TAAATAAAGTAAACAAAAAAATAAAAAAAGATAAA
Found at i:777948 original size:17 final size:17
Alignment explanation
Indices: 777890--777949 Score: 59
Period size: 17 Copynumber: 3.4 Consensus size: 17
777880 ATAAACATGT
*
777890 AAATAAAG-AAACATAGA
1 AAATAAAGTAAACA-AAA
* *
777907 AAATAAAATAAAATAAAA
1 AAATAAAGT-AAACAAAA
777925 TAAATAAAGTAAACAAAA
1 -AAATAAAGTAAACAAAA
777943 AAATAAA
1 AAATAAA
777950 AAAAGATAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
17 14 0.40
18 9 0.26
19 12 0.34
ACGTcount: A:0.77, C:0.03, G:0.05, T:0.15
Consensus pattern (17 bp):
AAATAAAGTAAACAAAA
Found at i:777996 original size:5 final size:5
Alignment explanation
Indices: 777906--777963 Score: 50
Period size: 5 Copynumber: 11.6 Consensus size: 5
777896 AGAAACATAG
* *
777906 AAAAT AAAAT AAAAT AAAAT -AAAT AAAGT AAACAAA AAAAT AAAA- AAAGAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT -AA-AAT AAAAT AAAAT AAA-AT
777957 -AAAT AAA
1 AAAAT AAA
777964 TAACGTGAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
4 9 0.21
5 29 0.67
6 4 0.09
7 1 0.02
ACGTcount: A:0.79, C:0.02, G:0.03, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:778222 original size:3 final size:3
Alignment explanation
Indices: 778210--778249 Score: 50
Period size: 3 Copynumber: 14.0 Consensus size: 3
778200 TTTGTATAGG
778210 TAA T-A TAA TAA TAA TAA -AA TAA T-A TATA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA
778250 AGACAAAAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
2 6 0.18
3 24 0.73
4 3 0.09
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:778338 original size:19 final size:19
Alignment explanation
Indices: 778311--778348 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
778301 GAATAAAAAC
*
778311 GAAATTAAATAAAAATATA
1 GAAAATAAATAAAAATATA
*
778330 GAAAATAAATAGAAATATA
1 GAAAATAAATAAAAATATA
778349 TATATATATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (19 bp):
GAAAATAAATAAAAATATA
Found at i:778351 original size:2 final size:2
Alignment explanation
Indices: 778344--778409 Score: 75
Period size: 2 Copynumber: 34.5 Consensus size: 2
778334 ATAAATAGAA
*
778344 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT -T A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * *
778384 AT -T AT AT AA AA AT AT GT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
778410 CATAAGTAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
1 3 0.05
2 52 0.95
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:778483 original size:26 final size:29
Alignment explanation
Indices: 778430--778491 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 29
778420 GATTTACAAA
778430 AATAATAGTTATAAATAATATATATATAT
1 AATAATAGTTATAAATAATATATATATAT
*
778459 AGTAAT-GTT-TAAAT-ATATATATATAT
1 AATAATAGTTATAAATAATATATATATAT
778485 AATAATA
1 AATAATA
778492 TTAAACAACT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 17 0.57
27 5 0.17
28 3 0.10
29 5 0.17
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (29 bp):
AATAATAGTTATAAATAATATATATATAT
Found at i:778593 original size:3 final size:3
Alignment explanation
Indices: 778581--778673 Score: 65
Period size: 3 Copynumber: 32.0 Consensus size: 3
778571 TTTGTATAGG
778581 TAA T-A TAA TAA TAA TAA TAA -AA TAA T-A TATA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA
* * * *
778624 -AGA CAA -AA GATT TAA AAA TAA TAA TAA T-A TAA T-A TAA TAA TAA
1 TA-A TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
778667 TGAA TAA
1 T-AA TAA
778674 AAACGAAATT
Statistics
Matches: 74, Mismatches: 5, Indels: 22
0.73 0.05 0.22
Matches are distributed among these distances:
2 13 0.18
3 53 0.72
4 8 0.11
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:778673 original size:13 final size:12
Alignment explanation
Indices: 778581--778673 Score: 65
Period size: 11 Copynumber: 8.0 Consensus size: 12
778571 TTTGTATAGG
778581 TAAT-ATAATAA
1 TAATAATAATAA
778592 TAATAATAA-AA
1 TAATAATAATAA
778603 TAAT-ATATATAA
1 TAATAATA-ATAA
778615 TAATAATAA-AGA
1 TAATAATAATA-A
* * *
778627 CAA-AAGATTTAA
1 TAATAATA-ATAA
*
778639 AAATAATAATAA
1 TAATAATAATAA
778651 T-ATAAT-ATAA
1 TAATAATAATAA
778661 TAATAATGAATAA
1 TAATAAT-AATAA
778674 AAACGAAATT
Statistics
Matches: 64, Mismatches: 7, Indels: 20
0.70 0.08 0.22
Matches are distributed among these distances:
10 8 0.12
11 25 0.39
12 20 0.31
13 11 0.17
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.31
Consensus pattern (12 bp):
TAATAATAATAA
Found at i:778705 original size:19 final size:19
Alignment explanation
Indices: 778678--778715 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
778668 GAATAAAAAC
*
778678 GAAATTAAATAAATATATA
1 GAAAATAAATAAATATATA
*
778697 GAAAATAAATATATATATA
1 GAAAATAAATAAATATATA
778716 TATATATTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (19 bp):
GAAAATAAATAAATATATA
Found at i:778708 original size:50 final size:49
Alignment explanation
Indices: 778593--778713 Score: 126
Period size: 50 Copynumber: 2.5 Consensus size: 49
778583 ATATAATAAT
* *
778593 AATAAT-AAAAT-AATATATATAATAATAATAAAGACAAAAGATTTAAA
1 AATAATAAAAATAAATATATATAATAATAATAAAAACAAAAGATTAAAA
* *
778640 AATAATAATAATATAATATA-ATAATAATGAATAAAAAC-GAA-ATTAAATA
1 AATAATAAAAATA-AATATATATAATAAT-AATAAAAACAAAAGATTAAA-A
778689 AATATATAGAAAATAAATATATATA
1 AATA-ATA-AAAATAAATATATATA
778714 TATATATATT
Statistics
Matches: 61, Mismatches: 5, Indels: 12
0.78 0.06 0.15
Matches are distributed among these distances:
47 6 0.10
48 9 0.15
49 15 0.25
50 23 0.38
51 8 0.13
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (49 bp):
AATAATAAAAATAAATATATATAATAATAATAAAAACAAAAGATTAAAA
Found at i:778824 original size:2 final size:2
Alignment explanation
Indices: 778819--778845 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
778809 TAATTGCGAA
778819 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
778846 AGGGGCTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:778831 original size:372 final size:370
Alignment explanation
Indices: 778096--778777 Score: 970
Period size: 372 Copynumber: 1.8 Consensus size: 370
778086 TCATATTAAT
*
778096 AATATATATATACTAATATTAATATTAATAAACTCTCCTATCATTTCAACGAAATTGGAGGAGGA
1 AATATATATATACTAATAATAATATTAATAAACTCTCCTATCATTTCAACGAAATTGGAGGAGGA
*
778161 AACATTTAGTGAATGAAGACAAATGTGGGGCTAAGTAGGTTTGTATAGGTAATATAATAATAATA
66 AAAATTTAGTGAATGAAGACAAATGTGGGGCTAAGTAGGTTTGTATAGGTAATATAATAATAATA
778226 AAATAATATATATAATAATAATAAAGACAAAAGATTTAAAAAAATAAAAATAATATAATATAATA
131 AAATAATATATATAATAATAATAAAGACAAAAGATTT-AAAAAAT--AAATAATATAATATAATA
778291 TAATAATAATGAATAAAAACGAAATTAAATAAAAATATAGAAAATAAATAGAAATATATATATAT
193 TAATAATAATGAATAAAAACGAAATTAAATAAAAATATAGAAAATAAATA-AAATATATATATAT
* * *** * * * * * * * *
778356 ATATATATATATATATATATGTATATTAATTATATAAAAATATGTATATATATACATAAGTAAAG
257 ATATATATATATACATAAAACAATAATAATAAGAAAAAAAAAAGAATATAAATACATAAGTAAAG
* **
778421 ATTTACAAAAATAATAGTTATAAATAATATATATATATAGTAATGTTTA
322 ATTTAAAAAAATAATAGAAATAAATAATATATATATATAGTAATGTTTA
*
778470 AATATATATATA-T-ATAATAATATTAA-ACAACTCTCCTATCATTTCAACGAAATTGGGGGAGG
1 AATATATATATACTAATAATAATATTAATA-AACTCTCCTATCATTTCAACGAAATTGGAGGAGG
*
778532 AAAAATTTAGTGAATGAAGAC-AATGTGGGGCTAGGTAGGTTTGTATAGGTAATATAATAATAAT
65 AAAAATTTAGTGAATGAAGACAAATGTGGGGCTAAGTAGGTTTGTATAGGT-A-AT-ATAATAAT
778596 AATAAAATAATATATATAATAATAATAAAGACAAAAGATTT-AAAAAT-AAT-A-ATAATATAAT
127 AATAAAATAATATATATAATAATAATAAAGACAAAAGATTTAAAAAATAAATAATATAATATAAT
* *
778657 ATAATAATAATGAATAAAAACGAAATTAAATAAATATATAGAAAATAAAT-ATATATATATATAT
192 ATAATAATAATGAATAAAAACGAAATTAAATAAAAATATAGAAAATAAATAAAATATATATATAT
* *
778721 AT-TATTTATATACATGAAAACAATAATGATAACGAAAAAAAAAAGAAATAATAAATA
257 ATATATATATATACAT-AAAACAATAATAATAA-GAAAAAAAAAAG-AAT-ATAAATA
778778 ACAATATATA
Statistics
Matches: 279, Mismatches: 21, Indels: 22
0.87 0.07 0.07
Matches are distributed among these distances:
364 11 0.04
365 24 0.09
366 8 0.03
367 61 0.22
368 7 0.03
369 3 0.01
371 29 0.10
372 72 0.26
373 3 0.01
374 61 0.22
ACGTcount: A:0.54, C:0.04, G:0.10, T:0.32
Consensus pattern (370 bp):
AATATATATATACTAATAATAATATTAATAAACTCTCCTATCATTTCAACGAAATTGGAGGAGGA
AAAATTTAGTGAATGAAGACAAATGTGGGGCTAAGTAGGTTTGTATAGGTAATATAATAATAATA
AAATAATATATATAATAATAATAAAGACAAAAGATTTAAAAAATAAATAATATAATATAATATAA
TAATAATGAATAAAAACGAAATTAAATAAAAATATAGAAAATAAATAAAATATATATATATATAT
ATATATATACATAAAACAATAATAATAAGAAAAAAAAAAGAATATAAATACATAAGTAAAGATTT
AAAAAAATAATAGAAATAAATAATATATATATATAGTAATGTTTA
Found at i:792155 original size:5 final size:5
Alignment explanation
Indices: 792147--792308 Score: 54
Period size: 5 Copynumber: 32.2 Consensus size: 5
792137 GATAAAAGGT
* *
792147 AAATA AAATA AACATGT AAATA AAGA-A ACATA GAAAATA AAATA AAATA
1 AAATA AAATA AA-AT-A AAATA AA-ATA AAATA -AA-ATA AAATA AAATA
* *
792196 AAAT- AAATA AAGTA AACA-A AAAAA AAATTA AAA-A AAGAT- AAAT-
1 AAATA AAATA AAATA AA-ATA AAATA AAA-TA AAATA AA-ATA AAATA
** * * * * *
792239 AAATA ACGT- GAATA AAATA TAAT- AAACA AAATA AAA-A AAATG AAGTA
1 AAATA AAATA AAATA AAATA AAATA AAATA AAATA AAATA AAATA AAATA
* *
792286 AATTA AATATA AGATA ATAATA A
1 AAATA AA-ATA AAATA A-AATA A
792309 TAAGAATAAC
Statistics
Matches: 115, Mismatches: 24, Indels: 35
0.66 0.14 0.20
Matches are distributed among these distances:
4 22 0.19
5 69 0.60
6 19 0.17
7 5 0.04
ACGTcount: A:0.71, C:0.03, G:0.06, T:0.20
Consensus pattern (5 bp):
AAATA
Found at i:792165 original size:17 final size:18
Alignment explanation
Indices: 792145--792192 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 18
792135 AAGATAAAAG
792145 GTAAATAAAATAAACAT-
1 GTAAATAAAATAAACATA
*
792162 GTAAAT-AAAGAAACATA
1 GTAAATAAAATAAACATA
*
792179 GAAAATAAAATAAA
1 GTAAATAAAATAAA
792193 ATAAAATAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
16 9 0.35
17 11 0.42
18 6 0.23
ACGTcount: A:0.69, C:0.04, G:0.08, T:0.19
Consensus pattern (18 bp):
GTAAATAAAATAAACATA
Found at i:792195 original size:10 final size:10
Alignment explanation
Indices: 792180--792308 Score: 58
Period size: 9 Copynumber: 13.2 Consensus size: 10
792170 AGAAACATAG
792180 AAAATAAAAT
1 AAAATAAAAT
792190 AAAATAAAAT
1 AAAATAAAAT
*
792200 -AAATAAAGT
1 AAAATAAAAT
*
792209 AAACA-AAAAA
1 AAA-ATAAAAT
792219 AAAATTAAAA-
1 AAAA-TAAAAT
792229 AAAGAT-AAAT
1 AAA-ATAAAAT
**
792239 -AAATAACGT
1 AAAATAAAAT
*
792248 -GAATAAAAT
1 AAAATAAAAT
* *
792257 ATAAT-AAAC
1 AAAATAAAAT
792266 AAAATAAAA-
1 AAAATAAAAT
* *
792275 AAAATGAAGT
1 AAAATAAAAT
*
792285 AAATTAAATAT
1 AAAATAAA-AT
*
792296 AAGATAATAAT
1 AAAATAA-AAT
792307 AA
1 AA
792309 TAAGAATAAC
Statistics
Matches: 89, Mismatches: 18, Indels: 23
0.68 0.14 0.18
Matches are distributed among these distances:
8 2 0.02
9 36 0.40
10 34 0.38
11 16 0.18
12 1 0.01
ACGTcount: A:0.72, C:0.02, G:0.05, T:0.20
Consensus pattern (10 bp):
AAAATAAAAT
Found at i:792205 original size:14 final size:14
Alignment explanation
Indices: 792181--792340 Score: 73
Period size: 14 Copynumber: 11.5 Consensus size: 14
792171 GAAACATAGA
792181 AAATAAAATAAAAT
1 AAATAAAATAAAAT
*
792195 AAA-ATAAATAAAGT
1 AAATA-AAATAAAAT
*
792209 AAACAAAA-AAAA-
1 AAATAAAATAAAAT
*
792221 AATTAAAA-AAAGAT
1 AAATAAAATAAA-AT
**
792235 AAAT-AAATAACGT
1 AAATAAAATAAAAT
* *
792248 GAATAAAATATAAT
1 AAATAAAATAAAAT
* *
792262 AAACAAAATAAAAA
1 AAATAAAATAAAAT
* * *
792276 AAATGAAGTAAATT
1 AAATAAAATAAAAT
792290 AAATATAAGATAATAAT
1 AAATA-AA-ATAA-AAT
*
792307 -AATAAGAATAACAT
1 AAATAA-AATAAAAT
* * *
792321 ATACACAAT-AAAT
1 AAATAAAATAAAAT
792334 AAATAAA
1 AAATAAA
792341 TAGATAAAAA
Statistics
Matches: 104, Mismatches: 31, Indels: 23
0.66 0.20 0.15
Matches are distributed among these distances:
12 9 0.09
13 19 0.18
14 56 0.54
15 10 0.10
16 8 0.08
17 2 0.02
ACGTcount: A:0.71, C:0.04, G:0.05, T:0.21
Consensus pattern (14 bp):
AAATAAAATAAAAT
Found at i:792227 original size:25 final size:25
Alignment explanation
Indices: 792190--792237 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
792180 AAAATAAAAT
* *
792190 AAAATAAAATAAATAAAG-TAAACA
1 AAAAAAAAATAAAAAAAGATAAACA
792214 AAAAAAAAATTAAAAAAAGATAAA
1 AAAAAAAAA-TAAAAAAAGATAAA
792238 TAAATAACGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 8 0.40
25 8 0.40
26 4 0.20
ACGTcount: A:0.79, C:0.02, G:0.04, T:0.15
Consensus pattern (25 bp):
AAAAAAAAATAAAAAAAGATAAACA
Found at i:792594 original size:20 final size:21
Alignment explanation
Indices: 792566--792606 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
792556 GAATAAAAAC
*
792566 GAAATTAAATA-AAAAATATA
1 GAAAATAAATAGAAAAATATA
*
792586 GAAAATAAATAGAAATATATA
1 GAAAATAAATAGAAAAATATA
792607 TATATATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.68, C:0.00, G:0.07, T:0.24
Consensus pattern (21 bp):
GAAAATAAATAGAAAAATATA
Found at i:792607 original size:2 final size:2
Alignment explanation
Indices: 792600--792783 Score: 127
Period size: 2 Copynumber: 95.5 Consensus size: 2
792590 ATAAATAGAA
*
792600 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT -T A- AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * * * * * *
792640 -T AT AT AA AA AT AT GT AT AT AT AT AC AT A- AGT AA AG AT TT AC
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT
* * *
792681 AA AA AT A- AT AGT -T AT AA AT A- AT AT AT AT AT AT AT AGT A- AT
1 AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT
* * * *
792721 GT TT AA AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
792763 AT AT AT AT AT AT A- AT A- AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT A
792784 ATAATATTAA
Statistics
Matches: 146, Mismatches: 23, Indels: 26
0.75 0.12 0.13
Matches are distributed among these distances:
1 10 0.07
2 132 0.90
3 4 0.03
ACGTcount: A:0.52, C:0.01, G:0.04, T:0.43
Consensus pattern (2 bp):
AT
Found at i:792892 original size:3 final size:3
Alignment explanation
Indices: 792880--792969 Score: 68
Period size: 3 Copynumber: 31.0 Consensus size: 3
792870 TTTGTATAGG
792880 TAA T-A TAA TAA TAA TAA -AA TAA T-A TATA TAA TAA TAA TAA -AGA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TA-A
* * *
792923 TAA -AA GATT TAA AAA TAA TAA TAA T-A TAA T-A TAA TAA TAA TGAA
1 TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA
792967 TAA
1 TAA
792970 AAACGAAATT
Statistics
Matches: 71, Mismatches: 5, Indels: 22
0.72 0.05 0.22
Matches are distributed among these distances:
2 13 0.18
3 50 0.70
4 8 0.11
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:797774 original size:3 final size:3
Alignment explanation
Indices: 797766--797790 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
797756 GAATTGGGTT
797766 TTG TTG TTG TTG TTG TTG TTG TTG T
1 TTG TTG TTG TTG TTG TTG TTG TTG T
797791 GCCTGAAAGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:804136 original size:66 final size:68
Alignment explanation
Indices: 804049--804184 Score: 186
Period size: 75 Copynumber: 1.9 Consensus size: 68
804039 TGGCCGGCGG
*
804049 AGCCGCTTCCGTTGCAACATGA-TT-TTAGTTATTGTCCTTTACTGTGATGAATTTTATTTCAAT
1 AGCCCCTTCCGTTGCAACATGATTTATTAGTTATTGTCCTTTACTGTGATGAATTTTATTTCAAT
804112 TGT
66 TGT
804115 AGCCCCTTCCGTTGCAACATGATTTTAAACACGTTAGTTATTGTCCTTTACTGTGATGAATTTTA
1 AGCCCCTTCCGTTGCAACATGA-TTT----A--TTAGTTATTGTCCTTTACTGTGATGAATTTTA
804180 TTTCA
59 TTTCA
804185 TGTAAATTAG
Statistics
Matches: 60, Mismatches: 1, Indels: 9
0.86 0.01 0.13
Matches are distributed among these distances:
66 21 0.35
68 2 0.03
75 37 0.62
ACGTcount: A:0.23, C:0.18, G:0.15, T:0.43
Consensus pattern (68 bp):
AGCCCCTTCCGTTGCAACATGATTTATTAGTTATTGTCCTTTACTGTGATGAATTTTATTTCAAT
TGT
Found at i:811228 original size:42 final size:42
Alignment explanation
Indices: 811073--811518 Score: 524
Period size: 41 Copynumber: 10.8 Consensus size: 42
811063 CAAAATACTA
* *
811073 TACTTTAGTGGCGTTTGT-ATA-AAAACGCCGCTAAAGA-ATCG
1 TACTTTAGTGGCGTTT-TAATACCAAACGCCGCTATAGACA-CG
* * * *
811114 TAATGTAGTGGCGTTTTTATA-CAAACGCCGCTATAAACTA-G
1 TACTTTAGTGGCGTTTTAATACCAAACGCCGCTATAGAC-ACG
* * * *
811155 TATTTTAGTGGCATTTTTATA-CAAACGCTGCTATAGACACG
1 TACTTTAGTGGCGTTTTAATACCAAACGCCGCTATAGACACG
* * *
811196 TACTTTTGTGGCGTTTTAATACCAAACGCTGCTATAGACTCG
1 TACTTTAGTGGCGTTTTAATACCAAACGCCGCTATAGACACG
*
811238 TACTTTAGTGGCATTTT--TACACAAACGCCGCTATAGACACG
1 TACTTTAGTGGCGTTTTAATAC-CAAACGCCGCTATAGACACG
*
811279 TACTTTAGTGGCGTTTTAATACCAAACGCCGCTATACACACG
1 TACTTTAGTGGCGTTTTAATACCAAACGCCGCTATAGACACG
* * *
811321 TACTTTAATGGCATTTT--TACACAAACGCCGCTATAGACAGG
1 TACTTTAGTGGCGTTTTAATAC-CAAACGCCGCTATAGACACG
*
811362 TACTTTTA-TGGCGTTTTAATACCAAACGCCGCTATAGATTA-G
1 TAC-TTTAGTGGCGTTTTAATACCAAACGCCGCTATAGA-CACG
*
811404 TACTTTAGTGGCGTTTT--TACACAAACGCCGCTATAGACATG
1 TACTTTAGTGGCGTTTTAATAC-CAAACGCCGCTATAGACACG
* *
811445 TACTTTTGTGGCGTTTTAATACCAAACGCCGCTATAGACTCG
1 TACTTTAGTGGCGTTTTAATACCAAACGCCGCTATAGACACG
811487 TACTTTAGTGGCGTTTTAATACCAAACGCCGC
1 TACTTTAGTGGCGTTTTAATACCAAACGCCGC
811519 AATTGTCATA
Statistics
Matches: 355, Mismatches: 32, Indels: 35
0.84 0.08 0.08
Matches are distributed among these distances:
40 12 0.03
41 182 0.51
42 150 0.42
43 11 0.03
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.32
Consensus pattern (42 bp):
TACTTTAGTGGCGTTTTAATACCAAACGCCGCTATAGACACG
Found at i:811248 original size:83 final size:83
Alignment explanation
Indices: 811073--811518 Score: 610
Period size: 83 Copynumber: 5.4 Consensus size: 83
811063 CAAAATACTA
* * * * * * * * *
811073 TACTTTAGTGGCGTTTGTATAAAAACGCCGCTAAAGA-ATCGTAATGTAGTGGCGTTTTTATA-C
1 TACTTTAGTGGCATTTTTACACAAACGCCGCTATAGACA-CGTACTTTTGTGGCGTTTTAATACC
* *
811136 AAACGCCGCTATAAACTAG
65 AAACGCCGCTATAGACTCG
* * *
811155 TATTTTAGTGGCATTTTTATACAAACGCTGCTATAGACACGTACTTTTGTGGCGTTTTAATACCA
1 TACTTTAGTGGCATTTTTACACAAACGCCGCTATAGACACGTACTTTTGTGGCGTTTTAATACCA
*
811220 AACGCTGCTATAGACTCG
66 AACGCCGCTATAGACTCG
*
811238 TACTTTAGTGGCATTTTTACACAAACGCCGCTATAGACACGTACTTTAGTGGCGTTTTAATACCA
1 TACTTTAGTGGCATTTTTACACAAACGCCGCTATAGACACGTACTTTTGTGGCGTTTTAATACCA
* *
811303 AACGCCGCTATACACACG
66 AACGCCGCTATAGACTCG
* * *
811321 TACTTTAATGGCATTTTTACACAAACGCCGCTATAGACAGGTACTTTTATGGCGTTTTAATACCA
1 TACTTTAGTGGCATTTTTACACAAACGCCGCTATAGACACGTACTTTTGTGGCGTTTTAATACCA
* *
811386 AACGCCGCTATAGATTAG
66 AACGCCGCTATAGACTCG
* *
811404 TACTTTAGTGGCGTTTTTACACAAACGCCGCTATAGACATGTACTTTTGTGGCGTTTTAATACCA
1 TACTTTAGTGGCATTTTTACACAAACGCCGCTATAGACACGTACTTTTGTGGCGTTTTAATACCA
811469 AACGCCGCTATAGACTCG
66 AACGCCGCTATAGACTCG
*
811487 TACTTTAGTGGCGTTTTAATAC-CAAACGCCGC
1 TACTTTAGTGGCATTTT--TACACAAACGCCGC
811519 AATTGTCATA
Statistics
Matches: 326, Mismatches: 34, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
82 50 0.15
83 263 0.81
84 10 0.03
85 3 0.01
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.32
Consensus pattern (83 bp):
TACTTTAGTGGCATTTTTACACAAACGCCGCTATAGACACGTACTTTTGTGGCGTTTTAATACCA
AACGCCGCTATAGACTCG
Found at i:817563 original size:43 final size:43
Alignment explanation
Indices: 817459--817644 Score: 234
Period size: 43 Copynumber: 4.4 Consensus size: 43
817449 ATATGACATT
** * * *
817459 TTGCGGCGTTTGTTCTAAAAAACGCCGCTATA-C-C-AGATCTT
1 TTGCGGCGTTTG-TGGAAAAAACGCCGCTAAATCTCAAGACCTA
* * *
817500 TTGCGGTGTTTATGGGAAAAACGCCGCTAAATCTCAAGACCTA
1 TTGCGGCGTTTGTGGAAAAAACGCCGCTAAATCTCAAGACCTA
*
817543 TTGCGGCGTTTGTGGAAAAAACACCGCTAAATCTCAAGACCTA
1 TTGCGGCGTTTGTGGAAAAAACGCCGCTAAATCTCAAGACCTA
* *
817586 TTGCGACGTTTGTGGAAAAAACGCCGCTAAATCTCAACACCTA
1 TTGCGGCGTTTGTGGAAAAAACGCCGCTAAATCTCAAGACCTA
*
817629 TTGCGGCGTTTTTGGA
1 TTGCGGCGTTTGTGGA
817645 CAACGCCGCT
Statistics
Matches: 125, Mismatches: 17, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
40 15 0.12
41 11 0.09
42 1 0.01
43 98 0.78
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (43 bp):
TTGCGGCGTTTGTGGAAAAAACGCCGCTAAATCTCAAGACCTA
Found at i:831052 original size:15 final size:16
Alignment explanation
Indices: 831029--831072 Score: 54
Period size: 16 Copynumber: 2.7 Consensus size: 16
831019 AGATTATGAG
831029 TTTGAGGATTTAA-GAT
1 TTTG-GGATTTAACGAT
831045 TTTGGGATTTAACGAT
1 TTTGGGATTTAACGAT
*
831061 TTAGGAGATTTA
1 TTTGG-GATTTA
831073 GAGAAAGTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 8 0.32
16 11 0.44
17 6 0.24
ACGTcount: A:0.30, C:0.02, G:0.25, T:0.43
Consensus pattern (16 bp):
TTTGGGATTTAACGAT
Found at i:837770 original size:21 final size:21
Alignment explanation
Indices: 837728--837770 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
837718 TTTCTGGGCT
* *
837728 AGGGGAATCGGTACCCATTCA
1 AGGGGAATCGATACCCACTCA
* *
837749 AGGGGAATCGATTCCCCCTCA
1 AGGGGAATCGATACCCACTCA
837770 A
1 A
837771 ACGAATATGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.28, C:0.28, G:0.26, T:0.19
Consensus pattern (21 bp):
AGGGGAATCGATACCCACTCA
Found at i:841354 original size:105 final size:105
Alignment explanation
Indices: 841144--842437 Score: 2056
Period size: 105 Copynumber: 12.4 Consensus size: 105
841134 GTATTGTTCC
* * ** * * **
841144 GGAGCCCAATATCATTCACTGTGAAGTTGAAATTGGCTCCGAAATTGAGAAGTTGTCGGTTGACA
1 GGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAA-ATGTTTGTTGACA
** ****
841209 GTCAGCGGTCCCTTCGTCGTGAAGTTGAACTTATACTGTCT
65 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
* ** *
841250 TGAGTCCAATATCCTTCGCGGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATATTTGTTGACAA
1 GGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAA
841315 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
* *
841355 GGAGTCCAATATCCTTCATGGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAA
1 GGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAA
841420 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
* **
841460 GGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGAATCTG-AA-T--GAAAT-TTTGTTGACAA
1 GGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAA
*
841520 GCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
* *
841560 GGAGTCCAATATCTTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACA
1 GGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAA-ATGTTTGTTGACA
* * *
841625 ACCAGCGGTCCCTTCGTTGTGAAGTTGAACATGCGTTGTTT
65 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
* *
841666 GGAGTCC-A-ATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGT-TGTTGTTGACA
1 GGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGT-TTGTTGACA
841728 ACCAGCGGTCCC-TCGTCGTGAAGTTGAACTTGCGTTGTCT
65 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
* * *
841768 GAAGTCCAATATCCTTCATTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGT-TGTTGTTGACA
1 GGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGT-TTGTTGACA
**
841832 GGCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
65 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
*
841873 GGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTG-AATTG-GAGAATGTTTGGTGACA
1 GGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGA-AATGTTTGTTGACA
841936 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
65 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
*
841977 GGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAA
1 GGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAA
842042 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
*
842082 GGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTG-AATTGGAGAAATGTTTGGTGACA
1 GGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATT-GAGAAATGTTTGTTGACA
842146 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
65 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
* *
842187 GGAGTCCAATATCCTTCGTTGTGAAGCTGAAATTGGCTCTGAACTTGAGAAATGTTTGTTGACAA
1 GGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAA
842252 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
* *
842292 GGAGTCCAATATCCTTCGTTGTGAAGCTGAAATTGGCTCTGAACTTGAGAAATGTTTGTTGACAA
1 GGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAA
842357 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
842397 GGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTG
1 GGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTG
842438 GGTAAAACCT
Statistics
Matches: 1112, Mismatches: 60, Indels: 33
0.92 0.05 0.03
Matches are distributed among these distances:
100 87 0.08
101 7 0.01
102 33 0.03
103 26 0.02
104 204 0.18
105 651 0.59
106 104 0.09
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (105 bp):
GGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAA
CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
Done.