genome.fa.s7874.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007874.1 Hibiscus syriacus cultivar Beakdansim tig00110249_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91435

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2774--2859	38	2.3	39	87	4	122	36	33	6	23	1.82
3011--3064	3	18.7	3	77	7	58	70	0	0	29	0.88
20226--20286	20	2.9	21	87	7	79	18	26	34	21	1.96
41526--41975	230	2.0	228	94	0	783	45	7	7	39	1.60
42041--42086	20	2.3	19	89	10	74	54	10	17	17	1.70
42209--42255	20	2.4	19	82	10	67	53	10	17	19	1.72
42218--42260	20	2.3	19	88	11	63	51	11	16	20	1.75
44576--44641	33	2.0	33	87	0	96	30	0	46	22	1.52
47612--47676	25	2.6	25	80	0	85	35	9	13	41	1.77
53787--53847	23	2.7	23	89	5	88	21	19	16	42	1.89
53787--53844	11	5.0	12	69	23	52	22	17	15	44	1.86
54093--54149	21	2.6	22	86	8	73	31	0	12	56	1.36
54188--54273	44	1.9	45	88	6	131	39	1	13	45	1.52
54187--54283	44	2.2	46	81	7	119	41	1	13	44	1.50
54387--54439	13	3.4	17	68	26	53	39	0	7	52	1.30
54467--54506	21	1.9	21	94	0	71	27	2	12	57	1.48
57384--57416	16	2.0	17	88	5	50	33	6	24	36	1.80
57644--57713	24	3.0	24	82	2	88	20	24	25	30	1.99
59622--59655	15	2.3	15	94	0	59	32	32	20	14	1.93
59738--59836	29	3.5	29	93	4	168	18	20	16	45	1.86
61179--61531	172	2.0	176	91	7	585	26	21	15	36	1.93
65888--65963	31	2.4	31	80	2	89	26	31	27	14	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65841--65963	63	2.0	63	82	6	151	25	29	28	17	1.97
68828--68910	19	4.6	19	82	14	113	18	34	30	16	1.93
68852--68918	14	4.4	14	77	17	71	19	35	29	14	1.92
68834--68918	33	2.6	33	92	0	143	20	35	29	15	1.93
70978--71053	31	2.4	31	80	2	89	26	31	27	14	1.95
70931--71053	63	2.0	63	82	6	151	25	29	28	17	1.97
73920--74002	19	4.6	19	82	14	113	18	34	30	16	1.93
73944--74010	14	4.4	14	77	17	71	19	35	29	14	1.92
73926--74010	33	2.6	33	92	0	143	20	35	29	15	1.93
76319--76399	29	2.8	29	92	3	137	17	20	16	45	1.85
78067--78108	21	2.0	21	100	0	84	19	38	23	19	1.93
78526--78653	14	10.1	13	75	19	128	42	10	1	46	1.47
78527--78653	26	5.0	26	85	10	165	41	10	1	46	1.47
78635--78688	19	3.0	20	74	20	64	48	11	0	40	1.39
78564--78699	14	9.5	14	72	20	95	44	10	1	43	1.47
78528--78720	49	3.9	49	78	12	171	45	10	1	43	1.46
78706--78759	27	2.0	27	100	0	108	44	11	7	37	1.68
78973--79002	15	2.1	15	93	6	53	53	6	0	40	1.27
78977--79039	21	2.9	21	80	7	63	50	6	1	41	1.37
78931--79210	11	23.4	11	67	24	117	44	10	1	43	1.48
79036--79116	14	6.1	14	78	11	89	43	8	2	45	1.48
79335--79451	60	2.0	60	98	0	225	46	11	0	42	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82344--82370	2	13.5	2	100	0	54	51	0	0	48	1.00
82805--82857	16	2.9	17	79	17	54	50	7	0	41	1.30
83055--83088	17	1.9	18	94	5	61	50	5	0	44	1.26
83309--83407	24	4.2	25	71	19	86	55	16	0	28	1.41
83313--83433	45	2.7	43	83	7	136	54	15	0	29	1.42
84459--84511	22	2.4	23	93	6	92	32	32	22	13	1.92
85037--85155	24	5.4	24	69	19	114	21	31	24	23	1.98
85058--85174	19	5.6	19	69	18	81	21	32	23	23	1.98
85014--85175	43	3.7	43	96	0	288	21	30	22	24	1.99
85208--85251	16	2.6	16	89	7	61	25	22	22	29	1.99
91299--91333	18	1.9	18	88	0	52	31	34	17	17	1.93
91321--91372	22	2.4	21	87	6	86	28	28	26	15	1.96

Tables:   1

The End!