genome.fa.s7875.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007875.1 Hibiscus syriacus cultivar Beakdansim tig00110251_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67816

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3055--3187	20	6.7	20	76	10	112	39	23	11	25	1.88
4102--4155	24	2.2	24	90	0	81	20	18	18	42	1.89
6411--6446	18	2.0	18	94	0	63	55	25	2	16	1.55
6691--6738	20	2.4	20	79	6	53	50	22	14	12	1.77
6748--6826	20	4.0	20	79	0	95	24	21	17	36	1.94
6740--6816	40	1.9	40	97	0	145	25	22	19	32	1.97
8409--8507	42	2.4	42	84	6	146	22	18	33	26	1.96
8409--8514	21	5.0	21	78	8	108	21	17	33	26	1.96
10611--10738	20	6.7	20	78	12	142	48	21	17	12	1.80
11661--11697	19	1.9	19	88	0	56	32	27	16	24	1.96
11783--11836	21	2.7	20	91	5	90	27	27	20	24	1.99
12941--13006	19	3.5	19	95	4	116	48	22	18	10	1.78
13362--13412	22	2.3	22	89	0	84	19	9	45	25	1.81
13598--13673	21	3.6	21	100	0	152	18	15	25	40	1.90
16927--17001	21	3.6	21	98	0	141	21	20	29	29	1.98
19396--19430	16	2.1	17	89	5	54	37	5	0	57	1.23
19572--19603	11	2.8	12	90	9	57	50	0	0	50	1.00
20014--20098	34	2.5	34	98	0	161	60	0	0	40	0.97
20574--20602	2	14.5	2	100	0	58	48	0	0	51	1.00
25166--25212	20	2.4	19	89	10	76	55	10	17	17	1.69
24954--25426	181	2.6	182	86	0	633	43	12	16	27	1.85
25347--25393	20	2.4	19	79	10	58	53	8	17	21	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27624--27688	21	3.1	21	93	0	103	41	10	30	16	1.83
27722--27787	33	2.0	33	90	0	105	28	0	48	22	1.51
29584--29632	19	2.6	19	96	0	89	32	2	10	55	1.45
30824--32134	183	7.1	183	95	1	2261	36	14	16	32	1.89
34983--35055	23	3.2	23	90	0	110	35	5	20	38	1.76
35471--35543	23	3.2	23	90	0	110	34	5	20	39	1.76
34637--35944	488	2.7	490	96	1	2423	41	7	10	40	1.69
36327--36441	60	1.9	60	87	7	171	32	18	5	44	1.72
36330--36470	60	2.3	60	81	9	162	31	19	5	43	1.74
36623--36771	60	2.5	60	84	6	203	46	4	16	32	1.67
37608--37637	15	2.0	15	93	0	51	46	3	6	43	1.46
38468--38530	31	2.0	31	93	0	108	33	25	17	23	1.96
41678--41771	31	3.0	31	80	11	120	34	20	18	27	1.95
47653--47734	21	3.9	21	72	12	78	15	25	35	23	1.94
50389--50458	34	2.1	34	100	0	140	31	24	20	24	1.98
51528--51567	21	1.9	21	85	10	55	35	10	2	52	1.48
60128--60202	29	2.6	29	95	2	134	20	20	16	44	1.87
65324--65515	95	2.0	94	83	1	240	42	23	13	20	1.87

Tables:   1

The End!