Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007876.1 Hibiscus syriacus cultivar Beakdansim tig00110252_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99081

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
604--675
20
3.7
20
88
3
103
31
15
5
47
1.68
896--979
31
2.7
31
81
1
87
30
9
9
50
1.67
2574--2630
27
2.1
27
86
0
78
15
40
10
33
1.82
8896--9340
223
2.0
222
94
0
773
35
24
13
26
1.92
12510--12549
2
20.0
2
100
0
80
50
0
0
50
1.00
19099--19197
29
3.4
28
67
22
69
40
4
22
33
1.73
19047--19221
60
2.9
59
81
7
203
40
5
21
32
1.77
28058--28110
20
2.7
20
93
0
88
39
22
18
18
1.92
28034--28110
40
1.9
40
82
10
95
38
22
18
20
1.93
30728--30846
42
2.8
42
78
7
125
24
34
18
22
1.96
30786--30846
21
3.0
20
72
15
61
21
39
19
19
1.93
32335--32370
18
2.0
18
94
0
63
16
0
25
58
1.38
34811--34844
12
2.8
12
90
0
50
14
0
29
55
1.40
35396--35433
16
2.5
15
84
12
51
65
0
5
28
1.14
35585--35647
20
3.2
20
74
0
72
19
14
23
42
1.87
38100--38264
38
4.3
40
76
16
170
43
8
3
44
1.50
38147--38177
16
2.0
16
93
6
55
45
6
6
41
1.55
38084--38266
78
2.3
81
79
16
215
43
8
3
44
1.51
39862--39897
8
4.4
8
93
6
63
88
0
0
11
0.50
39862--39897
17
2.2
17
95
5
65
88
0
0
11
0.50
39921--39968
22
2.2
22
88
3
71
52
4
2
41
1.32
39916--39976
22
2.7
22
80
14
70
50
3
1
44
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39951--40033
42
2.0
42
81
9
98
48
4
3
43
1.41
40024--40071
24
2.0
24
83
4
60
47
4
4
43
1.41
43155--43208
11
5.6
10
78
18
53
18
3
0
77
0.91
43155--43208
20
2.8
19
86
10
74
18
3
0
77
0.91
48485--49456
83
11.7
83
79
4
996
31
24
19
25
1.98
48485--49456
164
5.9
164
80
4
1004
31
24
19
25
1.98
48508--49456
247
3.8
248
88
1
1339
30
24
19
25
1.98
60493--60579
38
2.3
38
81
11
99
43
3
2
50
1.31
64276--64432
42
3.8
41
75
5
118
33
18
21
27
1.96
66326--66379
28
1.9
28
85
7
74
29
9
14
46
1.76
72806--72891
21
4.1
21
84
3
102
37
19
41
1
1.59
72814--72902
21
4.2
21
84
4
90
38
20
40
1
1.60
73242--73510
43
6.2
42
71
11
143
30
20
19
29
1.97
73534--73575
12
3.2
13
83
16
52
14
16
26
42
1.86
74264--74338
37
2.1
36
85
7
100
22
8
16
53
1.68
74530--74694
11
13.9
11
65
13
51
22
25
24
27
2.00
74567--74702
24
5.7
24
100
0
272
21
28
25
25
1.99
91142--91216
22
3.4
22
98
1
141
25
14
25
34
1.94

Tables:   1

The End!