Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007881.1 Hibiscus syriacus cultivar Beakdansim tig00110259_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  148206

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4597--4632
14
2.6
14
86
0
54
58
0
16
25
1.38
9769--9808
20
2.0
20
90
0
62
30
15
20
35
1.93
9837--9897
20
3.0
20
92
0
95
34
19
11
34
1.88
16037--16392
42
8.3
42
75
12
264
26
18
7
48
1.74
16155--16344
84
2.2
86
90
2
296
27
19
6
46
1.75
24001--24061
29
2.1
29
82
11
72
27
31
19
21
1.97
24595--24692
30
3.3
30
84
2
135
25
25
14
34
1.94
24595--24732
60
2.3
59
83
3
170
26
22
15
35
1.94
24595--24719
30
4.2
30
80
1
126
24
24
15
35
1.94
29541--29626
29
3.0
28
76
6
73
26
30
18
24
1.98
31624--31666
20
2.2
20
91
0
68
32
20
13
32
1.92
32007--32184
30
5.9
30
88
1
214
20
23
19
37
1.94
32748--32786
13
2.9
13
92
3
60
41
0
0
58
0.98
39235--39438
2
101.5
2
76
10
166
53
2
3
40
1.33
39895--39977
23
3.7
22
73
20
57
55
1
1
42
1.15
40180--40213
16
2.1
16
94
0
59
47
8
11
32
1.71
45405--45433
13
2.2
13
100
0
58
20
0
55
24
1.44
55128--55462
182
1.8
184
84
7
459
43
11
5
38
1.66
56531--56706
84
2.1
85
94
3
311
42
16
8
32
1.78
65505--65574
25
3.0
24
82
15
76
52
1
5
40
1.34
65521--65583
21
2.7
22
85
11
74
53
1
6
38
1.36
65627--65660
16
2.0
18
88
11
54
32
0
2
64
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65623--65663
19
2.2
18
86
4
55
34
0
2
63
1.08
65826--65931
39
2.7
39
78
16
121
44
4
15
35
1.67
66322--66396
31
2.4
31
90
0
114
46
13
10
29
1.76
78560--78869
155
2.0
154
99
0
611
40
18
12
28
1.87
80197--80262
32
2.1
32
100
0
132
46
12
12
28
1.77
84783--84923
72
1.9
75
95
4
261
31
9
23
34
1.88
101155--101213
22
2.6
22
83
2
82
38
22
11
27
1.89
101359--101394
11
3.3
11
88
0
54
22
8
5
63
1.43
104593--104761
56
3.0
56
81
3
198
42
28
10
17
1.83
104598--104761
55
3.0
55
81
4
195
41
29
10
18
1.83
108105--108253
81
1.8
81
88
2
228
44
2
8
44
1.47
108763--108809
18
2.6
18
80
10
60
23
2
0
74
0.93
111525--111556
16
2.1
15
94
5
55
50
28
0
21
1.49
112525--112754
55
4.2
54
79
9
193
32
23
16
28
1.96
112558--113009
51
8.6
56
85
8
268
28
25
16
29
1.97
112608--113023
51
8.0
51
88
4
510
28
25
16
29
1.96
114162--114206
7
6.7
7
78
16
51
8
11
0
80
0.92
114150--114243
25
3.6
27
78
11
88
6
18
0
75
1.01
114149--114200
14
3.9
14
82
5
63
7
15
0
76
0.99
114161--114210
20
2.4
21
83
12
68
8
12
0
80
0.92
114189--114286
44
2.3
42
77
7
99
7
21
1
70
1.17
114214--114278
34
1.9
34
81
6
78
6
23
1
69
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
114230--114278
18
3.0
16
77
13
55
6
24
2
67
1.24
114150--114295
26
5.5
26
67
23
74
6
19
0
72
1.11
123951--124060
48
2.3
46
83
12
132
40
20
10
29
1.84
125839--125870
16
2.1
15
94
5
55
50
28
0
21
1.49
133581--133624
15
3.0
15
90
3
63
50
11
27
11
1.72
142342--142390
21
2.3
21
85
3
71
53
0
2
44
1.12

Tables:   1

The End!