Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007883.1 Hibiscus syriacus cultivar Beakdansim tig00110263_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1590433
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 5 of 9
Found at i:655601 original size:24 final size:24
Alignment explanation
Indices: 655509--655603 Score: 77
Period size: 24 Copynumber: 4.0 Consensus size: 24
655499 ATTTCCGACT
* * *
655509 TGAATTATGTTCTGA-TACATGACC
1 TGAATTCTGTTCTGATTTC-TGATC
* *
655533 TGAATTCTGTTCCGATTTATGATC
1 TGAATTCTGTTCTGATTTCTGATC
* * *
655557 T-AGATTATGTTCTAATATCTGATC
1 TGA-ATTCTGTTCTGATTTCTGATC
*
655581 TGAATTCTGTTTTGATTTCTGAT
1 TGAATTCTGTTCTGATTTCTGAT
655604 ATCTCCGTTT
Statistics
Matches: 54, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
23 1 0.02
24 51 0.94
25 2 0.04
ACGTcount: A:0.24, C:0.14, G:0.16, T:0.46
Consensus pattern (24 bp):
TGAATTCTGTTCTGATTTCTGATC
Found at i:659942 original size:48 final size:48
Alignment explanation
Indices: 659890--659981 Score: 123
Period size: 48 Copynumber: 1.9 Consensus size: 48
659880 TCCTACTTGA
*
659890 ATTATGTTCTGATA-CATGACCTGAATTCTGTTCCGATTTCTGATCTAG
1 ATTATGTTCTAATATC-TGACCTGAATTCTGTTCCGATTTCTGATCTAG
* * **
659938 ATTATGTTCTAATATCTTATCTGAATTCTGTTTTGATTTCTGAT
1 ATTATGTTCTAATATCTGACCTGAATTCTGTTCCGATTTCTGAT
659982 ATCTCCGTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
48 37 0.97
49 1 0.03
ACGTcount: A:0.23, C:0.15, G:0.14, T:0.48
Consensus pattern (48 bp):
ATTATGTTCTAATATCTGACCTGAATTCTGTTCCGATTTCTGATCTAG
Found at i:659969 original size:24 final size:24
Alignment explanation
Indices: 659910--659969 Score: 59
Period size: 24 Copynumber: 2.5 Consensus size: 24
659900 GATACATGAC
* *
659910 CTGAATTCTGTTCCGATTTCTGAT
1 CTGAATTCTGTTCCAATATCTGAT
* * *
659934 CT-AGATTATGTTCTAATATCTTAT
1 CTGA-ATTCTGTTCCAATATCTGAT
659958 CTGAATTCTGTT
1 CTGAATTCTGTT
659970 TTGATTTCTG
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
23 1 0.04
24 26 0.93
25 1 0.04
ACGTcount: A:0.22, C:0.17, G:0.13, T:0.48
Consensus pattern (24 bp):
CTGAATTCTGTTCCAATATCTGAT
Found at i:660147 original size:2 final size:2
Alignment explanation
Indices: 660140--660180 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
660130 AGGATGGGGG
660140 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
660181 GTGTGTGTGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:664336 original size:24 final size:24
Alignment explanation
Indices: 664309--664362 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
664299 CGACTTGAAT
* *
664309 TCTGTTCTGGATTCTGTTATGATA
1 TCTGATCTGAATTCTGTTATGATA
* *
664333 TCTGATCTGAATTCTGTTTTGATT
1 TCTGATCTGAATTCTGTTATGATA
664357 TCTGAT
1 TCTGAT
664363 ATCTCTGTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.17, C:0.13, G:0.19, T:0.52
Consensus pattern (24 bp):
TCTGATCTGAATTCTGTTATGATA
Found at i:666508 original size:207 final size:207
Alignment explanation
Indices: 666151--666569 Score: 680
Period size: 207 Copynumber: 2.0 Consensus size: 207
666141 TTGTCTGACA
666151 GAAATTGTGAACCCCTATAGTTTGCCATTGTATCTCCAGTTATTGCTTCCCTCACAAAATCCATG
1 GAAATTGTGAACCCCTATAGTTTGCCATTGTATCTCCAGTTATTGCTTCCCTCACAAAATCCATG
* *
666216 GACCTAGGATTCCTGCCCGACCTGAAGTCTGTCTGACCTAAAGGACGAGTACTATTCCGGAAAGC
66 GACCTAGGATTCCCGCCCGACCTGAAGTCTGTCTGACCTAAAGGACGAATACTATTCCGGAAAGC
666281 CGAAGCATACCTCACAGAGATATTCTCCTTCTCTGTTTGTTGACCAAAACTCCTCTCCAGATTTC
131 CGAAGCATACCTCACAGAGATATTCTCCTTCTCTGTTTGTTGACCAAAACTCCTCTCCAGATTTC
666346 CATAATTCCCAG
196 CATAATTCCCAG
* *
666358 GAAATTGTGAACCCCTATAGTTTGCCATTGTATCTCCATTTATTGCTTCCCTCACAGAATCCATG
1 GAAATTGTGAACCCCTATAGTTTGCCATTGTATCTCCAGTTATTGCTTCCCTCACAAAATCCATG
* * * *
666423 GGCCT-GAGATTCCCGCCCGACCTGAAGTCTTTCTGACCTAAAGGACGAATATTATTCCGGAAAT
66 GACCTAG-GATTCCCGCCCGACCTGAAGTCTGTCTGACCTAAAGGACGAATACTATTCCGGAAAG
* * * *
666487 CCGAAGTATACGT-AGCAGAGATATTCTCCTTCTCTGTTTGTTGACCAAAACTCTTCTCCGGATT
130 CCGAAGCATACCTCA-CAGAGATATTCTCCTTCTCTGTTTGTTGACCAAAACTCCTCTCCAGATT
* *
666551 TCCTTCATTCCCAG
194 TCCATAATTCCCAG
666565 GAAAT
1 GAAAT
666570 GCACCAGCAC
Statistics
Matches: 196, Mismatches: 14, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
206 2 0.01
207 194 0.99
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (207 bp):
GAAATTGTGAACCCCTATAGTTTGCCATTGTATCTCCAGTTATTGCTTCCCTCACAAAATCCATG
GACCTAGGATTCCCGCCCGACCTGAAGTCTGTCTGACCTAAAGGACGAATACTATTCCGGAAAGC
CGAAGCATACCTCACAGAGATATTCTCCTTCTCTGTTTGTTGACCAAAACTCCTCTCCAGATTTC
CATAATTCCCAG
Found at i:667072 original size:59 final size:59
Alignment explanation
Indices: 666980--667097 Score: 209
Period size: 59 Copynumber: 2.0 Consensus size: 59
666970 TTCCAAAACT
* *
666980 ATATTTAGATTCATTAAAGTGATACAGTAACTATGTTAATAAAAATACATATTTGTAGA
1 ATATTTAGATTCACTAAAGTGATACAGTAACTATGTAAATAAAAATACATATTTGTAGA
*
667039 ATATTTAGATTCACTAAAGTGATACAGTAACTATGTAAATAAAAATACATATTTTTAGA
1 ATATTTAGATTCACTAAAGTGATACAGTAACTATGTAAATAAAAATACATATTTGTAGA
667098 TTATGCCCAA
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 56 1.00
ACGTcount: A:0.45, C:0.08, G:0.11, T:0.36
Consensus pattern (59 bp):
ATATTTAGATTCACTAAAGTGATACAGTAACTATGTAAATAAAAATACATATTTGTAGA
Found at i:668032 original size:33 final size:33
Alignment explanation
Indices: 667995--668075 Score: 135
Period size: 33 Copynumber: 2.5 Consensus size: 33
667985 CTAAAGTAGC
667995 ATGAAGCCCAAACAAAGCCTTACATCTTACCAA
1 ATGAAGCCCAAACAAAGCCTTACATCTTACCAA
* *
668028 ATGAAGCCAAAACGAAGCCTTACATCTTACCAA
1 ATGAAGCCCAAACAAAGCCTTACATCTTACCAA
*
668061 ATGAAACCCAAACAA
1 ATGAAGCCCAAACAA
668076 GGTCTAAATA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.46, C:0.28, G:0.10, T:0.16
Consensus pattern (33 bp):
ATGAAGCCCAAACAAAGCCTTACATCTTACCAA
Found at i:676519 original size:2 final size:2
Alignment explanation
Indices: 676512--676574 Score: 126
Period size: 2 Copynumber: 31.5 Consensus size: 2
676502 TATTAAACCA
676512 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
676554 AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT A
676575 ATAAAATAAT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 61 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:676771 original size:15 final size:15
Alignment explanation
Indices: 676751--676780 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
676741 TTAATTATTA
676751 ATCAATGATTAAAAT
1 ATCAATGATTAAAAT
*
676766 ATCAATTATTAAAAT
1 ATCAATGATTAAAAT
676781 TAAAAGCTCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.53, C:0.07, G:0.03, T:0.37
Consensus pattern (15 bp):
ATCAATGATTAAAAT
Found at i:678085 original size:3 final size:3
Alignment explanation
Indices: 678077--678167 Score: 175
Period size: 3 Copynumber: 30.7 Consensus size: 3
678067 ATTATTTATT
678077 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-A TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
678124 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
678168 CATGAAAGTG
Statistics
Matches: 87, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
2 2 0.02
3 85 0.98
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:678422 original size:76 final size:76
Alignment explanation
Indices: 678297--679088 Score: 1325
Period size: 76 Copynumber: 10.4 Consensus size: 76
678287 GAAATGTTAA
* * * * * *
678297 AAACATCATGCACTGAAGGGCTTACAGATGACTCTAAGGTTTTGAAAATATCAAAAAGCTCCCAA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
*
678362 AGGCTTTTTGA
66 AGGCTTTTTGG
* * *
678373 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGTTTTGAAAATATCAAAAAGCTACCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
678438 AGGCTTTTTGG
66 AGGCTTTTTGG
* *
678449 AAACATCATGCATTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCTGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
678514 AGGCTTTTTGG
66 AGGCTTTTTGG
*
678525 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCTA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
***
678590 AAATTTTTTGG
66 AGGCTTTTTGG
* *
678601 AAACATCATGCACTGTAGGACTTACAGATAACCCTAAGGCTTTGAAAACATCAAAAAACTCCCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
678666 AGGCTTTTTGG
66 AGGCTTTTTGG
678677 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
678742 AGGCTTTTTGG
66 AGGCTTTTTGG
*
678753 AAAACATCATACACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCG
1 -AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCG
678818 AAGGCTTTTTTGG
65 AAGGC-TTTTTGG
* * *
678831 AAACATCATGCACTGTAGGATTTACAGATGACCCTAAGGTTTTGAAAACATCAAAAA-CTCTCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
*
678895 AGGCTTTTGGG
66 AGGCTTTTTGG
*
678906 AAACATCATGCACTATAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
678971 AGGCTTTTTGG
66 AGGCTTTTTGG
*
678982 AAAACATCATGCACTGTAGGACTTACGGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCG
1 -AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCG
679047 AAGGCTTTTTGG
65 AAGGCTTTTTGG
679059 AAACATCATGCACTGTAGGACTTACAGATG
1 AAACATCATGCACTGTAGGACTTACAGATG
679089 TGGAAAATAG
Statistics
Matches: 673, Mismatches: 39, Indels: 8
0.93 0.05 0.01
Matches are distributed among these distances:
75 60 0.09
76 410 0.61
77 196 0.29
78 7 0.01
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (76 bp):
AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
AGGCTTTTTGG
Found at i:679791 original size:22 final size:22
Alignment explanation
Indices: 679766--679839 Score: 130
Period size: 22 Copynumber: 3.4 Consensus size: 22
679756 AATAAAGCTT
679766 TCATCTTTGAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
*
679788 TCATCTTTAAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
*
679810 CCATCTTTGAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
679832 TCATCTTT
1 TCATCTTT
679840 AAAGAGTGTA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 48 1.00
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.34
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:680310 original size:50 final size:50
Alignment explanation
Indices: 680211--680310 Score: 155
Period size: 50 Copynumber: 2.0 Consensus size: 50
680201 TAACTGGTTC
* * *
680211 GTAAAACATTTGACAACACATTCATCATTTCTTGTGGTTTCTACTTAGAT
1 GTAAAACATTTGACAACACATTCATCATTTCCTGTGGCTTCTACCTAGAT
* *
680261 GTAAAACATTTGACAACACATTCATCTTTTCCTGTGGCTTCTGCCTAGAT
1 GTAAAACATTTGACAACACATTCATCATTTCCTGTGGCTTCTACCTAGAT
680311 TTCTGGTCAA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 45 1.00
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.38
Consensus pattern (50 bp):
GTAAAACATTTGACAACACATTCATCATTTCCTGTGGCTTCTACCTAGAT
Found at i:684736 original size:7 final size:6
Alignment explanation
Indices: 684699--684733 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
684689 TTTCTCCTCT
**
684699 TTTTTC TTTTTC TTTTTC CCTTTC TTTTTC TTTTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTT
684734 TCTCATTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTTTC
Found at i:684758 original size:16 final size:15
Alignment explanation
Indices: 684721--684759 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
684711 TTTTTCCCTT
*
684721 TCTTTTTCTTTTTTC
1 TCTTTTTCCTTTTTC
684736 TCATTTTTCCTTTTTC
1 TC-TTTTTCCTTTTTC
684752 ATCTTTTT
1 -TCTTTTT
684760 TTCCATCTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 2 0.10
16 17 0.81
17 2 0.10
ACGTcount: A:0.05, C:0.21, G:0.00, T:0.74
Consensus pattern (15 bp):
TCTTTTTCCTTTTTC
Found at i:684759 original size:17 final size:17
Alignment explanation
Indices: 684723--684778 Score: 60
Period size: 18 Copynumber: 3.3 Consensus size: 17
684713 TTTCCCTTTC
* *
684723 TTTTTCTTTTTTC-TCA
1 TTTTTCCTTTTTCATCT
684739 TTTTTCCTTTTTCATCTT
1 TTTTTCCTTTTTCATC-T
* *
684757 TTTTTCCATCTTCATCT
1 TTTTTCCTTTTTCATCT
684774 TTTTT
1 TTTTT
684779 TCTTCTTTCT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
16 12 0.35
17 8 0.24
18 14 0.41
ACGTcount: A:0.07, C:0.21, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTCCTTTTTCATCT
Found at i:684777 original size:19 final size:18
Alignment explanation
Indices: 684739--684780 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
684729 TTTTTTCTCA
* *
684739 TTTTTCCTTTTTCATCTT
1 TTTTTCCATCTTCATCTT
684757 TTTTTCCATCTTCATCTT
1 TTTTTCCATCTTCATCTT
684775 TTTTTC
1 TTTTTC
684781 TTCTTTCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.07, C:0.24, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTTTCCATCTTCATCTT
Found at i:684785 original size:17 final size:17
Alignment explanation
Indices: 684739--684785 Score: 58
Period size: 18 Copynumber: 2.7 Consensus size: 17
684729 TTTTTTCTCA
* *
684739 TTTTTCCTTTTTCATCT
1 TTTTTTCTTCTTCATCT
*
684756 TTTTTTCCATCTTCATCT
1 TTTTTT-CTTCTTCATCT
684774 TTTTTTCTTCTT
1 TTTTTTCTTCTT
684786 TCTTTACTGG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
17 10 0.40
18 15 0.60
ACGTcount: A:0.06, C:0.23, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTTTTCTTCTTCATCT
Found at i:691120 original size:15 final size:15
Alignment explanation
Indices: 691100--691129 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
691090 TTAATTATTA
691100 ATCAATGATTAAAAT
1 ATCAATGATTAAAAT
*
691115 ATCAATTATTAAAAT
1 ATCAATGATTAAAAT
691130 TAAAAGCTCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.53, C:0.07, G:0.03, T:0.37
Consensus pattern (15 bp):
ATCAATGATTAAAAT
Found at i:692434 original size:3 final size:3
Alignment explanation
Indices: 692426--692468 Score: 70
Period size: 3 Copynumber: 14.7 Consensus size: 3
692416 ATTATTTATT
*
692426 TAA TAA TAA TAA TAA T-A TAT TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
692469 TATGAAAGTG
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:692450 original size:20 final size:20
Alignment explanation
Indices: 692425--692462 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
692415 AATTATTTAT
692425 TTAATAATAATAATAATATA
1 TTAATAATAATAATAATATA
692445 TTAATAATAATAATAATA
1 TTAATAATAATAATAATA
692463 ATAATATATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
TTAATAATAATAATAATATA
Found at i:694391 original size:37 final size:36
Alignment explanation
Indices: 694230--694659 Score: 408
Period size: 36 Copynumber: 11.8 Consensus size: 36
694220 CATATATATC
* * *
694230 TATATATTATATGGTTTGT-AAACAGTTTTTGAAAATA
1 TATATAATATATAGTTTTTAAAACA--TTTTGAAAATA
694267 CGTATATAATATATAGTTTTTTAAAAACATTTTG-AAA-A
1 --TATATAATATATAG-TTTTT-AAAACATTTTGAAAATA
*
694305 TATATAATATATAGTTTTTAAAACATTTTTGAAAA-C
1 TATATAATATATAGTTTTTAAAACA-TTTTGAAAATA
694341 TATATAATATATAGTTTTTAAAACATTTTAGAAAATA
1 TATATAATATATAGTTTTTAAAACATTTT-GAAAATA
694378 TATATAATATATAGTTTTTAAAATCATTTTGAAAACT-
1 TATATAATATATAGTTTTTAAAA-CATTTTGAAAA-TA
*
694415 TATATAATATATAGTTTTGAAAACATTTTGAAAACT-
1 TATATAATATATAGTTTTTAAAACATTTTGAAAA-TA
* * *
694451 TATATAACATATAATTTTGAAAACA--TT-----TA
1 TATATAATATATAGTTTTTAAAACATTTTGAAAATA
694480 TATAT--TATATAGTTTTTAAAAACATTTTGAAAATA
1 TATATAATATATAGTTTTT-AAAACATTTTGAAAATA
694515 TATATAATATATAGTTTTTTTAAAACATATTTGAAAATATA
1 TATATAATATATAG--TTTTTAAAACAT-TTTG-AAA-ATA
* *
694556 TATATATATTATATAATTTTTTTAAAACATTTTTGAAAACA
1 TATATA-A-TATAT-A-GTTTTTAAAACA-TTTTGAAAATA
* *
694597 TATATAATATATAG-TTTTAAAACATTTTGGAAATT
1 TATATAATATATAGTTTTTAAAACATTTTGAAAATA
* *
694632 TATATATTATAT-GTTTTTGAAAATATTT
1 TATATAATATATAGTTTTT-AAAACATTT
694660 ATATATATAA
Statistics
Matches: 340, Mismatches: 19, Indels: 67
0.80 0.04 0.16
Matches are distributed among these distances:
27 9 0.03
28 7 0.02
29 5 0.01
30 2 0.01
34 9 0.03
35 44 0.13
36 101 0.30
37 57 0.17
38 16 0.05
39 29 0.09
40 13 0.04
41 17 0.05
42 9 0.03
43 20 0.06
44 2 0.01
ACGTcount: A:0.44, C:0.04, G:0.07, T:0.46
Consensus pattern (36 bp):
TATATAATATATAGTTTTTAAAACATTTTGAAAATA
Found at i:694480 original size:27 final size:28
Alignment explanation
Indices: 694439--694506 Score: 79
Period size: 28 Copynumber: 2.5 Consensus size: 28
694429 TTTTGAAAAC
694439 ATTTTGAAAAC--TTATATAACATATA-
1 ATTTTGAAAACATTTATATAACATATAG
**
694464 ATTTTGAAAACATTTATATATTATATAG
1 ATTTTGAAAACATTTATATAACATATAG
* *
694492 TTTTTAAAAACATTT
1 ATTTTGAAAACATTT
694507 TGAAAATATA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
25 11 0.31
27 12 0.33
28 13 0.36
ACGTcount: A:0.44, C:0.06, G:0.04, T:0.46
Consensus pattern (28 bp):
ATTTTGAAAACATTTATATAACATATAG
Found at i:694593 original size:82 final size:76
Alignment explanation
Indices: 694464--694643 Score: 229
Period size: 78 Copynumber: 2.3 Consensus size: 76
694454 ATAACATATA
* *
694464 ATTTTGAAAACAT-T-TATATATTATATAGTTTTTAAAAACATTTTGAAAATATATATAATATAT
1 ATTTTGAAAATATATATATATATTATATAGTTTTTAAAAACATTTTGAAAACATATATAATATAT
694527 AGTTTTTTTAAAAC
66 AG---TTTTAAAAC
* *
694541 ATATTTGAAAATATATATATATATTATATAATTTTTTTAAAACATTTTTGAAAACATATATAATA
1 AT-TTTGAAAATATATATATATATTATAT-AGTTTTTAAAAACA-TTTTGAAAACATATATAATA
694606 TATAGTTTTAAAAC
63 TATAGTTTTAAAAC
* *
694620 ATTTTGGAAATTTATATATTATAT
1 ATTTTGAAAATATATATA-TATAT
694644 GTTTTTGAAA
Statistics
Matches: 91, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
77 2 0.02
78 24 0.26
79 17 0.19
80 12 0.13
81 12 0.13
82 24 0.26
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.47
Consensus pattern (76 bp):
ATTTTGAAAATATATATATATATTATATAGTTTTTAAAAACATTTTGAAAACATATATAATATAT
AGTTTTAAAAC
Found at i:694637 original size:35 final size:35
Alignment explanation
Indices: 694465--694564 Score: 69
Period size: 39 Copynumber: 2.7 Consensus size: 35
694455 TAACATATAA
*
694465 TTTTGAAAACATTTATATATTATATAGTTTTTAAAAACA-
1 TTTTGAAAACA--TATATAATATAT-G-TTTT-AAAACAT
*
694504 TTTTGAAAATATATATAATATATAGTTTTTTTAAAACAT
1 TTTTGAAAACATATATAATATAT-G---TTTTAAAACAT
* *
694543 ATTTGAAAATATATAT-ATATAT
1 TTTTGAAAACATATATAATATAT
694565 TATATAATTT
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
37 13 0.24
38 12 0.22
39 30 0.55
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (35 bp):
TTTTGAAAACATATATAATATATGTTTTAAAACAT
Found at i:694680 original size:3 final size:3
Alignment explanation
Indices: 694672--694699 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
694662 ATATATAATA
694672 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
694700 TATTTCTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:695233 original size:18 final size:19
Alignment explanation
Indices: 695210--695245 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
695200 CCGGGGAGAA
695210 GAGCGGTCAC-CGAAAAAC
1 GAGCGGTCACGCGAAAAAC
*
695228 GAGCGGTCTCGCGAAAAA
1 GAGCGGTCACGCGAAAAA
695246 AGGTAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.36, C:0.25, G:0.31, T:0.08
Consensus pattern (19 bp):
GAGCGGTCACGCGAAAAAC
Found at i:695710 original size:12 final size:11
Alignment explanation
Indices: 695693--695734 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
695683 TTTAGTCCCT
695693 TTTATTTATTTA
1 TTTATTTA-TTA
695705 TTTATTTATTA
1 TTTATTTATTA
*
695716 TTTTTTTCATT-
1 TTTATTT-ATTA
695727 TTTATTTA
1 TTTATTTA
695735 ACTTTTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
10 1 0.04
11 15 0.56
12 11 0.41
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTATTTATTA
Found at i:695806 original size:40 final size:41
Alignment explanation
Indices: 695740--695816 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
695730 ATTTAACTTT
* *
695740 TTTTTTTATTTCATTTCATTTTTTGTTTTTGTTTTTTTGGG
1 TTTTTTTATTTCATTTCATTTTTTGTTATTATTTTTTTGGG
695781 TTTTTTT-TTTCA-TT-ATTATTATTGTTATTATTTTTT
1 TTTTTTTATTTCATTTCATT-TT-TTGTTATTATTTTTT
695817 ATCTCTATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
38 3 0.09
39 4 0.12
40 18 0.56
41 7 0.22
ACGTcount: A:0.12, C:0.04, G:0.08, T:0.77
Consensus pattern (41 bp):
TTTTTTTATTTCATTTCATTTTTTGTTATTATTTTTTTGGG
Found at i:695808 original size:12 final size:11
Alignment explanation
Indices: 695793--695846 Score: 51
Period size: 12 Copynumber: 4.9 Consensus size: 11
695783 TTTTTTTTCA
695793 TTATTATTATT
1 TTATTATTATT
695804 GTTATTATT-TT
1 -TTATTATTATT
*
695815 TTATCT-CTATT
1 TTAT-TATTATT
695826 TT-TTATTATTT
1 TTATTATTA-TT
695837 TTATTATTAT
1 TTATTATTAT
695847 GATCTTTCTA
Statistics
Matches: 35, Mismatches: 2, Indels: 11
0.73 0.04 0.23
Matches are distributed among these distances:
9 1 0.03
10 8 0.23
11 12 0.34
12 14 0.40
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.72
Consensus pattern (11 bp):
TTATTATTATT
Found at i:696022 original size:18 final size:19
Alignment explanation
Indices: 695999--696037 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
695989 TCCCTTTTGA
695999 TTTATTA-TTTTATTTATT
1 TTTATTATTTTTATTTATT
*
696017 TTTATTATTTTTATTTGTT
1 TTTATTATTTTTATTTATT
696036 TT
1 TT
696038 GTTCATGGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (19 bp):
TTTATTATTTTTATTTATT
Found at i:696149 original size:13 final size:13
Alignment explanation
Indices: 696131--696160 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
696121 CGAATCGGGT
696131 TTTTAAATTTTAA
1 TTTTAAATTTTAA
*
696144 TTTTAATTTTTAA
1 TTTTAAATTTTAA
696157 TTTT
1 TTTT
696161 TCGCAATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTAAATTTTAA
Found at i:701343 original size:35 final size:35
Alignment explanation
Indices: 701297--701372 Score: 125
Period size: 35 Copynumber: 2.2 Consensus size: 35
701287 AAAACAGTCC
* *
701297 TCAATTTCATTCTAAACCCCAATTTCCAAAGTAAT
1 TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
*
701332 TCAATTTCATTCTAAACCCTAAATTCCAAAATAAT
1 TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
701367 TCAATT
1 TCAATT
701373 AAATTCAATT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.39, C:0.24, G:0.01, T:0.36
Consensus pattern (35 bp):
TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
Found at i:701915 original size:129 final size:130
Alignment explanation
Indices: 701769--702015 Score: 397
Period size: 129 Copynumber: 1.9 Consensus size: 130
701759 TATTTATATA
* * **
701769 ATCAATTTGGTCCTAAATTAAATAGAATTTAATAAATTAATCATTTAATTAGGATCTGACATGTG
1 ATCAATTTGGTCCTAAATTAAATAAAATTAAATAAATTAATCATTTAACCAGGATCTGACATGTG
* * *
701834 TTAGCACATGATCATGACACGTGTCATTGGTG-CACATGTCACCACCTAATTATTTATATATGCT
66 TTAACACATGATCATAACACATGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
701898 ATCAATTTGGTCCTAAATTAAATAAAATTAAATAAATTAATCATTTAACCAGGATCTGACATGTG
1 ATCAATTTGGTCCTAAATTAAATAAAATTAAATAAATTAATCATTTAACCAGGATCTGACATGTG
* * *
701963 TTAACACATGATCATAATATATGTTATTGGTGACACATGTCACCACCTAATTA
66 TTAACACATGATCATAACACATGTCATTGGTGACACATGTCACCACCTAATTA
702016 GAAGAAAATT
Statistics
Matches: 107, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
129 87 0.81
130 20 0.19
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (130 bp):
ATCAATTTGGTCCTAAATTAAATAAAATTAAATAAATTAATCATTTAACCAGGATCTGACATGTG
TTAACACATGATCATAACACATGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
Found at i:702373 original size:28 final size:27
Alignment explanation
Indices: 702342--702404 Score: 63
Period size: 28 Copynumber: 2.3 Consensus size: 27
702332 AGCTGATACA
*
702342 ATATTTTAAAAGAATAAATTTAAGATTT
1 ATATTTTAAAA-AATAAATTTAAGAATT
** * *
702370 ATATATTTTTAAACTAAATTTAATAATT
1 ATAT-TTTAAAAAATAAATTTAAGAATT
702398 ATATTTT
1 ATATTTT
702405 TCATATTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
27 3 0.10
28 21 0.72
29 5 0.17
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (27 bp):
ATATTTTAAAAAATAAATTTAAGAATT
Found at i:702505 original size:16 final size:18
Alignment explanation
Indices: 702484--702517 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
702474 ATTTCTTATT
702484 AAAAATA-AAAT-ATTCA
1 AAAAATATAAATGATTCA
702500 AAAAATATAAATGATTCA
1 AAAAATATAAATGATTCA
702518 TACATTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (18 bp):
AAAAATATAAATGATTCA
Found at i:707301 original size:2 final size:2
Alignment explanation
Indices: 707296--707359 Score: 128
Period size: 2 Copynumber: 32.0 Consensus size: 2
707286 GATTTTATTT
707296 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
707338 TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA
707360 AGAACCAGCT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 62 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:711494 original size:3 final size:3
Alignment explanation
Indices: 711486--711512 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
711476 TTTTTAGGTG
711486 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
711513 AATTCTCTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:712851 original size:21 final size:21
Alignment explanation
Indices: 712827--712875 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
712817 TTATTCAATA
*
712827 TTAAGGAGCAAAAATATCTCT
1 TTAAAGAGCAAAAATATCTCT
712848 TTAAAGAGCAAAAATATCTCT
1 TTAAAGAGCAAAAATATCTCT
712869 TTAAAGA
1 TTAAAGA
712876 TCAGTTTATC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.29
Consensus pattern (21 bp):
TTAAAGAGCAAAAATATCTCT
Found at i:713042 original size:2 final size:2
Alignment explanation
Indices: 713035--713062 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
713025 ATTAAATAAG
713035 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
713063 ATAAATTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:725692 original size:189 final size:189
Alignment explanation
Indices: 725321--725696 Score: 504
Period size: 190 Copynumber: 2.0 Consensus size: 189
725311 AAATAATTTT
* * * *
725321 TTTGAATATTAGTAGGATAATTACTATTTTAATAAGTCAATTTAAAAAAGTATTTCTTATCTTTT
1 TTTGAATATCAGGAGGATAATTACTATTTGAATAAGTCAATTTAAAAAAGTATTTCTTACCTTTT
* * *
725386 TAATTTTGAATATCAAAAGATAATTATATACTTTAGCATATTTCAAATTAAAATAATATCTATTT
66 TAACTTTGAATATCAAAACATAATTATATACTTTAGCATATTTAAAATTAAAATAATATCTATTT
* * *
725451 AAGTTTGAATAGTAAAATAAGTTTATATTTTGACCATTGCAGATTAAATATATTATTTAA
131 AAGTTTGAATAGTAAAAGAAGTTTATATTTTGAACATTGCAAATTAAATATA-TATTTAA
* * * * *
725511 TTTGAATATCAGGAGGATAATTACTCTTTGAATATGTCAATTTGAAAAGGTATTTGTTACCTTTT
1 TTTGAATATCAGGAGGATAATTACTATTTGAATAAGTCAATTTAAAAAAGTATTTCTTACCTTTT
* * * *
725576 TAACTTTGAATAT-TAAACATAATTATATATTTTTGTATATTTAAAATTAAAATAATATCTATTT
66 TAACTTTGAATATCAAAACATAATTATATACTTTAGCATATTTAAAATTAAAATAATATCTATTT
* * * * *
725640 AAGTTTGAATGGTAAAAGGAGTTTTATCTTTTGAATATTTCAAATT-AATATATATTT
131 AAGTTTGAATAGTAAAAGAAG-TTTATATTTTGAACATTGCAAATTAAATATATATTT
725697 TATCTGTTTA
Statistics
Matches: 161, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
188 5 0.03
189 69 0.43
190 87 0.54
ACGTcount: A:0.39, C:0.06, G:0.10, T:0.45
Consensus pattern (189 bp):
TTTGAATATCAGGAGGATAATTACTATTTGAATAAGTCAATTTAAAAAAGTATTTCTTACCTTTT
TAACTTTGAATATCAAAACATAATTATATACTTTAGCATATTTAAAATTAAAATAATATCTATTT
AAGTTTGAATAGTAAAAGAAGTTTATATTTTGAACATTGCAAATTAAATATATATTTAA
Found at i:727614 original size:12 final size:12
Alignment explanation
Indices: 727597--727625 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
727587 TTGTTGTGCT
727597 TGCTCCTCGGGC
1 TGCTCCTCGGGC
727609 TGCTCCTCGGGC
1 TGCTCCTCGGGC
727621 TGCTC
1 TGCTC
727626 AGGCTCATCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.41, G:0.31, T:0.28
Consensus pattern (12 bp):
TGCTCCTCGGGC
Found at i:735738 original size:30 final size:30
Alignment explanation
Indices: 735679--735781 Score: 136
Period size: 30 Copynumber: 3.4 Consensus size: 30
735669 CCCGAAGGAC
* *
735679 CTATCCAGAGGTCACAAAGA-CCCCGGTAA
1 CTATCCAGAGGTCATAAAGATCCTCGGTAA
735708 CTATCCAGAGGTCATAAAGATCCTCGGTAA
1 CTATCCAGAGGTCATAAAGATCCTCGGTAA
* *
735738 CTGTTCAGAGGTCATAAAGATCCTCGGTAAA
1 CTATCCAGAGGTCATAAAGATCCTCGGT-AA
* *
735769 CTGTCCATAGGTC
1 CTATCCAGAGGTC
735782 CCGAAGAACC
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
29 19 0.29
30 34 0.52
31 13 0.20
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.22
Consensus pattern (30 bp):
CTATCCAGAGGTCATAAAGATCCTCGGTAA
Found at i:735781 original size:31 final size:30
Alignment explanation
Indices: 735682--735806 Score: 135
Period size: 30 Copynumber: 4.1 Consensus size: 30
735672 GAAGGACCTA
* *
735682 TCCAGAGGTCACAAAGA-CCCCGGTAACTA
1 TCCAGAGGTCACAAAGATCCTCGGTAACTG
*
735711 TCCAGAGGTCATAAAGATCCTCGGTAACTG
1 TCCAGAGGTCACAAAGATCCTCGGTAACTG
* *
735741 TTCAGAGGTCATAAAGATCCTCGGTAAACTG
1 TCCAGAGGTCACAAAGATCCTCGGT-AACTG
* * * * *
735772 TCCATAGGTCCCGAAGAACCTAGGTAAACTG
1 TCCAGAGGTCACAAAGATCCTCGGT-AACTG
735803 TCCA
1 TCCA
735807 TATGTCTCGA
Statistics
Matches: 83, Mismatches: 11, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
29 16 0.19
30 34 0.41
31 33 0.40
ACGTcount: A:0.32, C:0.26, G:0.22, T:0.21
Consensus pattern (30 bp):
TCCAGAGGTCACAAAGATCCTCGGTAACTG
Found at i:735807 original size:31 final size:31
Alignment explanation
Indices: 735754--735831 Score: 95
Period size: 31 Copynumber: 2.5 Consensus size: 31
735744 AGAGGTCATA
* *
735754 AAGATCCTCGGTAAACTGTCCATAGGTCCCG
1 AAGAACCTAGGTAAACTGTCCATAGGTCCCG
* *
735785 AAGAACCTAGGTAAACTGTCCATATGTCTCG
1 AAGAACCTAGGTAAACTGTCCATAGGTCCCG
*
735816 AA-AGACATAGGTAAAC
1 AAGA-ACCTAGGTAAAC
735832 CCTCGACTCT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
30 1 0.02
31 40 0.98
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.22
Consensus pattern (31 bp):
AAGAACCTAGGTAAACTGTCCATAGGTCCCG
Found at i:736334 original size:2 final size:2
Alignment explanation
Indices: 736327--736359 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
736317 ATACAATTCC
736327 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
736360 CTAACTCATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:736946 original size:21 final size:21
Alignment explanation
Indices: 736916--736960 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
736906 ATTCTGTCGT
* *
736916 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
736937 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
736958 TTG
1 TTG
736961 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:743753 original size:42 final size:42
Alignment explanation
Indices: 743706--743796 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
743696 CCGAAATCTC
* * *
743706 GTGTTTGTTTCACGTAATTC-GTTTTCTGAAAAATGTTTTTCT
1 GTGTTTGTTTCACGTAATTCATTTTTC-GAAAAATGTTTTCCA
743748 GTGTTTGTTTCACGTAATTCATTTTTCGAAAAATGTTTTCCA
1 GTGTTTGTTTCACGTAATTCATTTTTCGAAAAATGTTTTCCA
743790 GTGTTTG
1 GTGTTTG
743797 GTTGGAGGAC
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
42 40 0.89
43 5 0.11
ACGTcount: A:0.20, C:0.12, G:0.18, T:0.51
Consensus pattern (42 bp):
GTGTTTGTTTCACGTAATTCATTTTTCGAAAAATGTTTTCCA
Found at i:744055 original size:22 final size:21
Alignment explanation
Indices: 744000--744070 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 21
743990 ATCAAAATAT
*
744000 TAAT-TATTAAAATA-TTTAA
1 TAATATATTATAATATTTTAA
744019 -AATATATTTATTAATATTTCTAA
1 TAATATA-TTA-TAATATTT-TAA
744042 TAATATATTATAATATTTTTAA
1 TAATATATTATAATA-TTTTAA
*
744064 TATTATA
1 TAATATA
744071 ATAAAATAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 11
0.77 0.04 0.20
Matches are distributed among these distances:
18 3 0.07
19 2 0.05
20 3 0.07
21 4 0.09
22 16 0.37
23 9 0.21
24 6 0.14
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (21 bp):
TAATATATTATAATATTTTAA
Found at i:744078 original size:22 final size:22
Alignment explanation
Indices: 744031--744078 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
744021 TATATTTATT
* *
744031 AATATTTCTAATAATATATTAT
1 AATATTTCTAATAATATAATAA
* *
744053 AATATTTTTAATATTATAATAA
1 AATATTTCTAATAATATAATAA
744075 AATA
1 AATA
744079 ATCAATTATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (22 bp):
AATATTTCTAATAATATAATAA
Found at i:744237 original size:27 final size:27
Alignment explanation
Indices: 744169--744238 Score: 83
Period size: 27 Copynumber: 2.6 Consensus size: 27
744159 TTTCATAGAA
744169 ATAATATTATTAA-ATTAATAATAATG
1 ATAATATTATTAATATTAATAATAATG
*
744195 A-AATATTATTATATATTAATATTAAT-
1 ATAATATTATTA-ATATTAATAATAATG
*
744221 ATAATATCTAATAATATT
1 ATAATAT-TATTAATATT
744239 TTAATAAAGA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
25 10 0.26
26 3 0.08
27 21 0.55
28 4 0.11
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (27 bp):
ATAATATTATTAATATTAATAATAATG
Found at i:744252 original size:35 final size:33
Alignment explanation
Indices: 744212--744333 Score: 86
Period size: 33 Copynumber: 3.8 Consensus size: 33
744202 ATTATATATT
744212 AATATTAATATAATATCTAATAATATTTTAATAA
1 AATATTAATATAATATCT-ATAATATTTTAATAA
*
744246 AGATATT--TAAAATATACTAATTAATATTTT--TAA
1 A-ATATTAATATAATAT-CT-A-TAATATTTTAATAA
* *
744279 AATA-TAATATAACA-CTAT--TACTTTAAT-A
1 AATATTAATATAATATCTATAATATTTTAATAA
744307 AATAATTAATATAAT-T-TATAATATTTT
1 AAT-ATTAATATAATATCTATAATATTTT
744334 TATTTCAATA
Statistics
Matches: 70, Mismatches: 6, Indels: 27
0.68 0.06 0.26
Matches are distributed among these distances:
27 5 0.07
28 4 0.06
29 6 0.09
30 9 0.13
31 8 0.11
32 3 0.04
33 16 0.23
34 5 0.07
35 14 0.20
ACGTcount: A:0.50, C:0.04, G:0.01, T:0.45
Consensus pattern (33 bp):
AATATTAATATAATATCTATAATATTTTAATAA
Found at i:744259 original size:23 final size:22
Alignment explanation
Indices: 744213--744284 Score: 63
Period size: 23 Copynumber: 3.1 Consensus size: 22
744203 TTATATATTA
* *
744213 ATATTAATATAATATCTAATAAT
1 ATATTAATAAAATATTTAA-AAT
*
744236 ATTTTAATAAAGATATTTAAAAT
1 ATATTAATAAA-ATATTTAAAAT
* * *
744259 ATACTAATTAATATTTTTAAAAT
1 ATATTAA-TAAAATATTTAAAAT
744282 ATA
1 ATA
744285 ATATAACACT
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
23 30 0.75
24 10 0.25
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.44
Consensus pattern (22 bp):
ATATTAATAAAATATTTAAAAT
Found at i:749105 original size:630 final size:630
Alignment explanation
Indices: 747881--749144 Score: 2091
Period size: 630 Copynumber: 2.0 Consensus size: 630
747871 ATAACTCCTA
* *
747881 CTTGGGATAAGGAGTAACTAGAGGTGGTGAATACACATACCTTAGCTATTGTAGTAGCTAATGGT
1 CTTGGGATAAGGAGGAACCAGAGGTGGTGAATACACATACCTTAGCTATTGTAGTAGCTAATGGT
* * * * *
747946 CAGAAACTTTTTAGTTCAGCAAAGTGCAAAATAGTGCAGTGGAACATGCAGAGCCGCTCTTTTGT
66 CAGAAACTTTTTAGATCAACAAAGTGAAAAACAGTGCAGTGGAACATGCAGAGCCACTCTTTTGT
* *
748011 TCACGATTTCAGAGTGCTCAATTTAAGGGCAGTGATATGGTCATATGAATGGATTGGATGAAACT
131 TCACAATTTCAGAGTGCTCAATTTAAGGGCAGTGATATGGTCATAGGAATGGATTGGATGAAACT
* * *
748076 TTTCAGCCTTATTCTTATGGACTTCAATAATTTAACTATATGTTTCCATAAGCAAGGTGAATCAA
196 TTTCAACCTTATTCTTATGGACTTCAACAATTTAACTATATGTTTCCAGAAGCAAGGTGAATCAA
*
748141 TTGTCATACATGGACAACCTAATACATTTGCCTTACAAGAAGTCTCAGGAGATACATTTCAGAAA
261 TTGTCATACATGGACAACCTAATA-ATTTGCCCTACAAGAAGTCTCAGGAGATACATTTCAGAAA
* * *
748206 ATGACTATGCAAGATCCTGACTTAATTGGCTATATATTCATGATGACTATAGATATTCCTCACTC
325 ATAACTATGCAAGATCCTAACTTAATTGGCCATATATTCATGATGACTATAGATATTCCTCACTC
*
748271 ACCTATTCCCCCTGAAATTCAACCCATGCTACAATCCTACAATACAATATTTGAGGAACCTAGAG
390 ACCTATTCCCCCTGAAATTCAACCCATGCTACAATCCTACAATACAATATTTAAGGAACCTAGAG
* *
748336 GCCTACCCCTCCAGAAACCATGATCATGCCATAGCCTTGAAACCATATTATTCCCCAATAAACAT
455 GCCTACCCCTCCAAAAACCATGATCATGCCATAGCCTTGAAACCATATTATTCCCCAAAAAACAT
* * * *
748401 AAGACCCTATAGGTTTGCTTATCATCAGAAGTCTGAGGTGGAAAAGTAATTTGCAACTATACTGT
520 AAGACCATATAGGTTTGCTTATCATCAGAAGTCTAAGGTGGAAAAGTAAATTGCAACTATACTAT
*
748466 CTTCTTATATTATCCAGCGTAGTAAGAGTCCATTTGCATCACCATG
585 CTTCTTATATTATCCAGCGTAGTAAGAGTCAATTTGCATCACCATG
*
748512 CTTGGGATAAGGAGGCACCAG-GGTGGTGAATACACATACCTTAGCTATTGTAGTAGCTAATGGT
1 CTTGGGATAAGGAGGAACCAGAGGTGGTGAATACACATACCTTAGCTATTGTAGTAGCTAATGGT
*
748576 CAGAAACTTTTTAGATCAACAAAGTGAAAAACAGTGCAGTGGAACATGCAGGGCCACTCTTTTGT
66 CAGAAACTTTTTAGATCAACAAAGTGAAAAACAGTGCAGTGGAACATGCAGAGCCACTCTTTTGT
* * **
748641 TCATAATTTCAGAGTGCTTAATTTAAGGGCAGTGATATGGTCATAGGCGTGGATTGGATGAAACT
131 TCACAATTTCAGAGTGCTCAATTTAAGGGCAGTGATATGGTCATAGGAATGGATTGGATGAAACT
* *
748706 TTTCAACCTTATTCTTATGGACTTCAACAATTTAATTATGTGTTTCCAGAAGCAAGGTGAATCAA
196 TTTCAACCTTATTCTTATGGACTTCAACAATTTAACTATATGTTTCCAGAAGCAAGGTGAATCAA
* *
748771 TTGTCATACATGGACAACCTAAT-GTGTTGTCCCTACAAGAAGTCTCAGGAGCTACATTTCAGAA
261 TTGTCATACATGGACAACCTAATAAT-TTG-CCCTACAAGAAGTCTCAGGAGATACATTTCAGAA
*
748835 ATTAACTATGCAAGATCCTAACTTAATTGGCCATATATTCATGATGACTATAGATATTCCTCACT
324 AATAACTATGCAAGATCCTAACTTAATTGGCCATATATTCATGATGACTATAGATATTCCTCACT
* *
748900 CACCTATTCCCCCTGAAATTTAACCCATGTTACAATCCTACAATACAATATTTAAGGAACCTAGA
389 CACCTATTCCCCCTGAAATTCAACCCATGCTACAATCCTACAATACAATATTTAAGGAACCTAGA
* * * *
748965 GGCCTACCCCTGCAAAAATCATGATCATGCCATAGCCTTGAAACCATATTCTTCCCCAAAAAACT
454 GGCCTACCCCTCCAAAAACCATGATCATGCCATAGCCTTGAAACCATATTATTCCCCAAAAAACA
* *
749030 TGAGACCATATAGGTTTGCTTATCATCAGTAGTCTAAGGTGGAAAAGTAAATTGCAACTATACTA
519 TAAGACCATATAGGTTTGCTTATCATCAGAAGTCTAAGGTGGAAAAGTAAATTGCAACTATACTA
*
749095 TCTTCTTATATTATCCAGCGTAGTAAGAGTCAATTTTCATCACCATG
584 TCTTCTTATATTATCCAGCGTAGTAAGAGTCAATTTGCATCACCATG
749142 CTT
1 CTT
749145 ACTTATTAAG
Statistics
Matches: 587, Mismatches: 44, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
628 1 0.00
629 3 0.01
630 565 0.96
631 18 0.03
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.30
Consensus pattern (630 bp):
CTTGGGATAAGGAGGAACCAGAGGTGGTGAATACACATACCTTAGCTATTGTAGTAGCTAATGGT
CAGAAACTTTTTAGATCAACAAAGTGAAAAACAGTGCAGTGGAACATGCAGAGCCACTCTTTTGT
TCACAATTTCAGAGTGCTCAATTTAAGGGCAGTGATATGGTCATAGGAATGGATTGGATGAAACT
TTTCAACCTTATTCTTATGGACTTCAACAATTTAACTATATGTTTCCAGAAGCAAGGTGAATCAA
TTGTCATACATGGACAACCTAATAATTTGCCCTACAAGAAGTCTCAGGAGATACATTTCAGAAAA
TAACTATGCAAGATCCTAACTTAATTGGCCATATATTCATGATGACTATAGATATTCCTCACTCA
CCTATTCCCCCTGAAATTCAACCCATGCTACAATCCTACAATACAATATTTAAGGAACCTAGAGG
CCTACCCCTCCAAAAACCATGATCATGCCATAGCCTTGAAACCATATTATTCCCCAAAAAACATA
AGACCATATAGGTTTGCTTATCATCAGAAGTCTAAGGTGGAAAAGTAAATTGCAACTATACTATC
TTCTTATATTATCCAGCGTAGTAAGAGTCAATTTGCATCACCATG
Found at i:756482 original size:80 final size:80
Alignment explanation
Indices: 756296--756773 Score: 809
Period size: 80 Copynumber: 6.0 Consensus size: 80
756286 CTAGCGAGAG
* *
756296 GAATCCCTATTGCTTCTACGAAAGAGAAGACGCCTTTGCCTATCCTGTTAGCCC-GG-GAGAGGA
1 GAATTCCTATTGCTTCTACGAAAGAGAAGACGCCTTTGCCTATCCTGTTAGCCCAGGAGAGTGGA
756359 GATACTTTCGCTCAT
66 GATACTTTCGCTCAT
* * *
756374 AAATTCCTATTGCTTCTACGAAAGAGAAGACACCTTTGCCAATCCTGTTAGCCCAGGAGAGTGGA
1 GAATTCCTATTGCTTCTACGAAAGAGAAGACGCCTTTGCCTATCCTGTTAGCCCAGGAGAGTGGA
756439 GATACTTTCGCTCAT
66 GATACTTTCGCTCAT
756454 GAATTCCTATTGCTTCTACGAAAGAGAAGACGCCTTTGCCTATCCTGTTAGCCCAGGAGAGTGGA
1 GAATTCCTATTGCTTCTACGAAAGAGAAGACGCCTTTGCCTATCCTGTTAGCCCAGGAGAGTGGA
756519 GATACTTTCGCTCAT
66 GATACTTTCGCTCAT
* *
756534 GAATTCCTATTGCTTCTACGAAAGAGAAGACGCCTTTGCCTATCCTGTTAGCCCTGGAGAGTGAA
1 GAATTCCTATTGCTTCTACGAAAGAGAAGACGCCTTTGCCTATCCTGTTAGCCCAGGAGAGTGGA
756599 GATACTTTCGCTCAT
66 GATACTTTCGCTCAT
* *
756614 GAATTCCTATTGCTTCTACGAAAGAGAAGACGCCTTAGCCTATCCTGTTCGCCCAGGAGAGTGGA
1 GAATTCCTATTGCTTCTACGAAAGAGAAGACGCCTTTGCCTATCCTGTTAGCCCAGGAGAGTGGA
* *
756679 AATACTTTGGCTCAT
66 GATACTTTCGCTCAT
*
756694 GAATTCCTATTGCTTCTACTAAAGAGAAGACGCCTTTGCCTATCCTGTTCA-CCCAGGAGAGTGG
1 GAATTCCTATTGCTTCTACGAAAGAGAAGACGCCTTTGCCTATCCTGTT-AGCCCAGGAGAGTGG
*
756758 AGATACTTCCGCTCAT
65 AGATACTTTCGCTCAT
756774 TCTTCAATGT
Statistics
Matches: 375, Mismatches: 22, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
78 50 0.13
79 2 0.01
80 323 0.86
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (80 bp):
GAATTCCTATTGCTTCTACGAAAGAGAAGACGCCTTTGCCTATCCTGTTAGCCCAGGAGAGTGGA
GATACTTTCGCTCAT
Found at i:758335 original size:26 final size:26
Alignment explanation
Indices: 758306--758358 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
758296 TTAATAATTT
* *
758306 TCAAATAATTTGGGTTTGATTAACGG
1 TCAAATAATTTCGGTTCGATTAACGG
758332 TCAAATAATTTCGGTTCGATTAACGG
1 TCAAATAATTTCGGTTCGATTAACGG
758358 T
1 T
758359 TAAAGAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (26 bp):
TCAAATAATTTCGGTTCGATTAACGG
Found at i:765514 original size:26 final size:26
Alignment explanation
Indices: 765491--765545 Score: 65
Period size: 31 Copynumber: 1.9 Consensus size: 26
765481 TTAAGCTCGC
765491 GAGTTTTCGAGTCGAGTCGAGCTCCATTTT
1 GAGTTTTCGAGTCGAGTCGAGCTCC----T
765521 AGAGTTTTCGAGTCGAGTCGAGCTC
1 -GAGTTTTCGAGTCGAGTCGAGCTC
765546 AGCAATACTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.18, C:0.20, G:0.29, T:0.33
Consensus pattern (26 bp):
GAGTTTTCGAGTCGAGTCGAGCTCCT
Found at i:767534 original size:52 final size:50
Alignment explanation
Indices: 767459--767568 Score: 184
Period size: 52 Copynumber: 2.2 Consensus size: 50
767449 TGAGGATTCT
*
767459 GAAGAGAATCTTTCGATAATAAATTTTGGTATTAAAGAGTGAGTACCCTA
1 GAAGAGCATCTTTCGATAATAAATTTTGGTATTAAAGAGTGAGTACCCTA
*
767509 GAAGAGCATCTCTTCCGATAGTAAATTTTGGTATTAAAGAGTGAGTACCCTA
1 GAAGAGCATCT-TT-CGATAATAAATTTTGGTATTAAAGAGTGAGTACCCTA
767561 GAAGAGCA
1 GAAGAGCA
767569 AGGAATTGAC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
50 10 0.18
51 2 0.04
52 44 0.79
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.29
Consensus pattern (50 bp):
GAAGAGCATCTTTCGATAATAAATTTTGGTATTAAAGAGTGAGTACCCTA
Found at i:768034 original size:24 final size:24
Alignment explanation
Indices: 768006--768074 Score: 84
Period size: 24 Copynumber: 2.9 Consensus size: 24
767996 ACATTACCTG
* *
768006 AATTCTGTTCTGATTTCTGATCTG
1 AATTCTGTTATGATTTCTGATCTA
* * *
768030 GATTCAGTTATGATATCTGATCTA
1 AATTCTGTTATGATTTCTGATCTA
*
768054 AATTCTGTTATGATTTATGAT
1 AATTCTGTTATGATTTCTGAT
768075 ATCTCCGTTT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.25, C:0.12, G:0.16, T:0.48
Consensus pattern (24 bp):
AATTCTGTTATGATTTCTGATCTA
Found at i:786012 original size:26 final size:25
Alignment explanation
Indices: 785976--786024 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
785966 GATGCGAGAT
* *
785976 ATAAATTTATAATATTTTAAGAGGTA
1 ATAAACTTATAAAATTTT-AGAGGTA
786002 ATAAACTTATAAAATTTTAGAGG
1 ATAAACTTATAAAATTTTAGAGG
786025 AAACGAAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 5 0.24
26 16 0.76
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (25 bp):
ATAAACTTATAAAATTTTAGAGGTA
Found at i:788338 original size:18 final size:18
Alignment explanation
Indices: 788315--788387 Score: 74
Period size: 18 Copynumber: 3.9 Consensus size: 18
788305 AGGGATTATC
788315 AGTGGTCCTTCGGGACAT
1 AGTGGTCCTTCGGGACAT
* *
788333 AGTGGTTCTTCGGAACAAT
1 AGTGGTCCTTCGGGAC-AT
* *
788352 CGGTGGTCCTCCGGGACAT
1 -AGTGGTCCTTCGGGACAT
* *
788371 AGTGGTCATTCGAGACA
1 AGTGGTCCTTCGGGACA
788388 AATATTCAGT
Statistics
Matches: 43, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
18 27 0.63
19 4 0.09
20 12 0.28
ACGTcount: A:0.21, C:0.22, G:0.32, T:0.26
Consensus pattern (18 bp):
AGTGGTCCTTCGGGACAT
Found at i:791339 original size:3 final size:3
Alignment explanation
Indices: 791331--791363 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
791321 TTAATCTGAG
791331 ATA ATA ATA ATA ATA ATA ATA ATA ATA A-A ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
791364 ATATTATTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 27 0.93
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:792974 original size:17 final size:17
Alignment explanation
Indices: 792935--792994 Score: 57
Period size: 17 Copynumber: 3.2 Consensus size: 17
792925 ATACAGGTTT
792935 TTTTCTTTGTTCTTCTATATA
1 TTTT-TTTGTTCTTC--T-TA
792956 TTTTTTTGTTCTTCTTA
1 TTTTTTTGTTCTTCTTA
* *
792973 TTGTTTTATTCTTTCTTA
1 TTTTTTTGTTC-TTCTTA
792991 TTTT
1 TTTT
792995 ACAACACGTT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
17 11 0.31
18 10 0.29
20 10 0.29
21 4 0.11
ACGTcount: A:0.10, C:0.12, G:0.05, T:0.73
Consensus pattern (17 bp):
TTTTTTTGTTCTTCTTA
Found at i:795483 original size:24 final size:24
Alignment explanation
Indices: 795429--795492 Score: 65
Period size: 24 Copynumber: 2.7 Consensus size: 24
795419 AGGATCGGGC
** *
795429 CACAAGAGTAGAGAAAACACGTGT
1 CACAAGAACAGAGAAAACACGTGA
*
795453 GACAAGAACAGAGAAAACACGTGA
1 CACAAGAACAGAGAAAACACGTGA
* **
795477 CATAAGAGTAGAGAAA
1 CACAAGAACAGAGAAA
795493 GCGTGTCCTA
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.52, C:0.14, G:0.25, T:0.09
Consensus pattern (24 bp):
CACAAGAACAGAGAAAACACGTGA
Found at i:803924 original size:17 final size:17
Alignment explanation
Indices: 803902--803942 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
803892 AAAAATTTTA
803902 TCGACGATACGAATTTG
1 TCGACGATACGAATTTG
803919 TCGACGATACGAATTTG
1 TCGACGATACGAATTTG
803936 TCGACGA
1 TCGACGA
803943 AGGTGTTCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (17 bp):
TCGACGATACGAATTTG
Found at i:813304 original size:2 final size:2
Alignment explanation
Indices: 813286--813321 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
813276 TGAAGTTTCA
* *
813286 CT CT CT GT CT CT GT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
813322 TTTAAAGATT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.44, G:0.06, T:0.50
Consensus pattern (2 bp):
CT
Found at i:816651 original size:15 final size:15
Alignment explanation
Indices: 816631--816661 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
816621 CCTAAAGTAT
*
816631 TAATAATAATTAATA
1 TAATAATAATCAATA
816646 TAATAATAATCAATA
1 TAATAATAATCAATA
816661 T
1 T
816662 TTAAGGGACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (15 bp):
TAATAATAATCAATA
Found at i:818133 original size:36 final size:36
Alignment explanation
Indices: 818063--818167 Score: 149
Period size: 36 Copynumber: 2.9 Consensus size: 36
818053 TAATCTGATC
* *
818063 TTGCTTCACTACTCTTTTTGTGAAGG-ATGAATTTGCA
1 TTGCTTCACTACTC-TTTTGTGAAGGCTTG-ATTTGAA
*
818100 TTGCTTTACTACTCTTTTGTGAAGGCTTGATTTGAA
1 TTGCTTCACTACTCTTTTGTGAAGGCTTGATTTGAA
*
818136 CTGCTTCACTACTCTTTTGTGAAGGCTTGATT
1 TTGCTTCACTACTCTTTTGTGAAGGCTTGATT
818168 GACTTGAGAA
Statistics
Matches: 62, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
36 47 0.76
37 15 0.24
ACGTcount: A:0.19, C:0.17, G:0.19, T:0.45
Consensus pattern (36 bp):
TTGCTTCACTACTCTTTTGTGAAGGCTTGATTTGAA
Found at i:828764 original size:19 final size:20
Alignment explanation
Indices: 828740--828780 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
828730 TATTATTTGC
828740 AAATGAA-AATGTTGTGGAA
1 AAATGAAGAATGTTGTGGAA
*
828759 AAATGAATGGATGTTGTGGAA
1 AAATGAA-GAATGTTGTGGAA
828780 A
1 A
828781 TTGTCTGATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 7 0.37
21 12 0.63
ACGTcount: A:0.44, C:0.00, G:0.29, T:0.27
Consensus pattern (20 bp):
AAATGAAGAATGTTGTGGAA
Found at i:844021 original size:22 final size:22
Alignment explanation
Indices: 843995--844074 Score: 69
Period size: 23 Copynumber: 3.7 Consensus size: 22
843985 ATAGGGCAGA
843995 GGGAATCGATACCCCCTTGAAG
1 GGGAATCGATACCCCCTTGAAG
* * *
844017 GGGAACCGATTCCCCCTTTGAAT
1 GGGAATCGATACCCCC-TTGAAG
* *
844040 GGGAA-CTGATTCCCTC-T--AG
1 GGGAATC-GATACCCCCTTGAAG
844059 GGGAATCGATACCCCC
1 GGGAATCGATACCCCC
844075 CTAGGGTTCT
Statistics
Matches: 48, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
19 13 0.27
20 1 0.02
21 1 0.02
22 15 0.31
23 18 0.38
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (22 bp):
GGGAATCGATACCCCCTTGAAG
Found at i:844037 original size:23 final size:22
Alignment explanation
Indices: 843995--844053 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 22
843985 ATAGGGCAGA
* *
843995 GGGAATCGATACCCCCTTGAAG
1 GGGAACCGATTCCCCCTTGAAG
*
844017 GGGAACCGATTCCCCCTTTGAAT
1 GGGAACCGATTCCCCC-TTGAAG
*
844040 GGGAACTGATTCCC
1 GGGAACCGATTCCC
844054 TCTAGGGGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
22 14 0.44
23 18 0.56
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (22 bp):
GGGAACCGATTCCCCCTTGAAG
Found at i:852320 original size:60 final size:60
Alignment explanation
Indices: 852253--852390 Score: 172
Period size: 60 Copynumber: 2.3 Consensus size: 60
852243 TAAAGAACGC
*
852253 AAATGATCCCTCGACTATAGAGTACTGCTTTATTAAGTTCACT-AACTATTAAAAGTTACA
1 AAATGATCCCTCGACTATAGAGTACTGATTTATTAAG-TCACTCAACTATTAAAAGTTACA
* ** * * * *
852313 AAATGATCCTTTAACTATAGAGTATTGATTTGTTAAGTCTCTCAACTATTAAAAGTTATA
1 AAATGATCCCTCGACTATAGAGTACTGATTTATTAAGTCACTCAACTATTAAAAGTTACA
852373 AAATGA-CCACTCGACTAT
1 AAATGATCC-CTCGACTAT
852391 TCATTATGTT
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
59 6 0.09
60 59 0.91
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.35
Consensus pattern (60 bp):
AAATGATCCCTCGACTATAGAGTACTGATTTATTAAGTCACTCAACTATTAAAAGTTACA
Found at i:852936 original size:13 final size:13
Alignment explanation
Indices: 852918--852949 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
852908 CATTCTAAGT
852918 TGGATCGTTAAAA
1 TGGATCGTTAAAA
852931 TGGATCGTTAAAA
1 TGGATCGTTAAAA
852944 TGGATC
1 TGGATC
852950 ATGTTCAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.34, C:0.09, G:0.25, T:0.31
Consensus pattern (13 bp):
TGGATCGTTAAAA
Found at i:857601 original size:18 final size:18
Alignment explanation
Indices: 857546--857625 Score: 81
Period size: 18 Copynumber: 4.4 Consensus size: 18
857536 CAAGTTCGGC
*
857546 TCCAAGTTCACATTGTGA
1 TCCAAGTTCACATTGTGT
* * *
857564 ACAAAGTTTACATTGTGT
1 TCCAAGTTCACATTGTGT
*
857582 TCCAAGTTCACATTGGGT
1 TCCAAGTTCACATTGTGT
* *
857600 TCCAAGTCCACATAGT-T
1 TCCAAGTTCACATTGTGT
857617 CTCCAAGTT
1 -TCCAAGTT
857626 TATGTTGTGC
Statistics
Matches: 49, Mismatches: 12, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
17 1 0.02
18 48 0.98
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.34
Consensus pattern (18 bp):
TCCAAGTTCACATTGTGT
Found at i:862816 original size:23 final size:23
Alignment explanation
Indices: 862786--862831 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
862776 ATTTATGTGA
862786 TTTATATA-ACTACAT-GATCATT
1 TTTATATACACTAC-TGGATCATT
862808 TTTACTATACACTACTGGATCATT
1 TTTA-TATACACTACTGGATCATT
862832 ATTTTGATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 4 0.19
23 5 0.24
24 12 0.57
ACGTcount: A:0.33, C:0.17, G:0.07, T:0.43
Consensus pattern (23 bp):
TTTATATACACTACTGGATCATT
Found at i:863561 original size:29 final size:29
Alignment explanation
Indices: 863523--863763 Score: 233
Period size: 29 Copynumber: 8.3 Consensus size: 29
863513 AAATATAAAA
** *
863523 TTACAATAAAAGGTAGAACTTTTTGAAAT
1 TTACAATAAAAGACAAAACTTTTTGAAAT
*
863552 TTACAATAAAGGACAAAACTTTTTGAAAT
1 TTACAATAAAAGACAAAACTTTTTGAAAT
**
863581 TTACAAT-AAAGAACAAAACTAATT-ATAAT
1 TTACAATAAAAG-ACAAAACTTTTTGA-AAT
* *
863610 TTACAATAAAAGATAAAACTTTTTGGAAT
1 TTACAATAAAAGACAAAACTTTTTGAAAT
* *
863639 TTACAATAAAGGACAAAACTTTTTGGAAT
1 TTACAATAAAAGACAAAACTTTTTGAAAT
* * *
863668 TAACAATAAAATACAAAACTTTTTCAAAT
1 TTACAATAAAAGACAAAACTTTTTGAAAT
*
863697 TTACAAT-AAAGTACAAAA-TATTTT-ATAAA
1 TTACAATAAAAG-ACAAAACT-TTTTGA-AAT
* * *
863726 TTACAATAAAATACAAAACTTCATAGAAA-
1 TTACAATAAAAGACAAAACTT-TTTGAAAT
863755 TTACAATAA
1 TTACAATAA
863764 TGACATTTTT
Statistics
Matches: 177, Mismatches: 24, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
28 9 0.05
29 156 0.88
30 11 0.06
31 1 0.01
ACGTcount: A:0.52, C:0.10, G:0.07, T:0.31
Consensus pattern (29 bp):
TTACAATAAAAGACAAAACTTTTTGAAAT
Found at i:863615 original size:87 final size:87
Alignment explanation
Indices: 863523--863706 Score: 273
Period size: 87 Copynumber: 2.1 Consensus size: 87
863513 AAATATAAAA
* * *
863523 TTACAATAAAAGGTAGAACTTTTTGAAATTTACAATAAAGGACAAAACTTTTTGAAATTTACAAT
1 TTACAATAAAAGATAAAACTTTTTGAAATTTACAATAAAGGACAAAACTTTTTGAAATTAACAAT
863588 AAAGA-ACAAAACTAATT-ATAAT
66 AAA-ATACAAAACTAATTCA-AAT
* *
863610 TTACAATAAAAGATAAAACTTTTTGGAATTTACAATAAAGGACAAAACTTTTTGGAATTAACAAT
1 TTACAATAAAAGATAAAACTTTTTGAAATTTACAATAAAGGACAAAACTTTTTGAAATTAACAAT
**
863675 AAAATACAAAACTTTTTCAAAT
66 AAAATACAAAACTAATTCAAAT
863697 TTACAATAAA
1 TTACAATAAA
863707 GTACAAAATA
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
86 1 0.01
87 86 0.98
88 1 0.01
ACGTcount: A:0.51, C:0.10, G:0.08, T:0.32
Consensus pattern (87 bp):
TTACAATAAAAGATAAAACTTTTTGAAATTTACAATAAAGGACAAAACTTTTTGAAATTAACAAT
AAAATACAAAACTAATTCAAAT
Found at i:865642 original size:4 final size:4
Alignment explanation
Indices: 865633--867357 Score: 3128
Period size: 4 Copynumber: 433.8 Consensus size: 4
865623 AAACGCCACT
* *
865633 CATA CATA CATA CATA CATC CATA TATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * * * *
865681 CATA CATA CATA CATA CATA CATA CATA CATG CATG CATG CATG CATG
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * *
865729 CATG CATG CATA CATA CATA CATA CATA CATA CATC CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
865777 CATA CATA CATA CATA CATA CATA CATA CGTA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
865825 CATA CATA CATA CATA CATA CATA CATA CAT- -ATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * * *
865871 CATG CATA CATG CATA CATG CATA CATA CATG CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
865919 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
865967 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
866015 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * *
866063 CATA CATA CATA CATA CATA CGTA CATA CATA CATA CGTA CATA CGTA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
866111 CATA CATA CATA CATA C--A CATA CATA CATA CATG CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * * *
866157 CATA CATG CATA CATG CATA CATG CATA CATA CATG CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
866205 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
866253 CATA CATA CATG CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
866301 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
866349 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
866397 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
866445 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
866493 CATA CATA CATA CATA C--A CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
866539 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
866587 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
866635 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
866683 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
866731 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
866779 CATA CATA CATA CATA CATA C--A CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
866825 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
866873 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA C--A
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
866919 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
866967 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
867015 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
867063 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
867111 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
867159 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
867207 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * * *
867255 CATG CATA CATG CATA CATA CATG CATA CATC CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
867303 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
867351 CATA CAT
1 CATA CAT
867358 GCATTAGGTG
Statistics
Matches: 1667, Mismatches: 44, Indels: 20
0.96 0.03 0.01
Matches are distributed among these distances:
2 10 0.01
4 1657 0.99
ACGTcount: A:0.48, C:0.25, G:0.01, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:867805 original size:2 final size:2
Alignment explanation
Indices: 867798--867846 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
867788 TTGTTCTTAG
867798 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
867840 TA TA TA T
1 TA TA TA T
867847 TGGTTAATTA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:869210 original size:22 final size:23
Alignment explanation
Indices: 869176--869219 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 23
869166 AAATATGTTT
* * *
869176 TATTTTTGGATATTTTTAAATTC
1 TATTTTTGAATATATATAAATTC
869199 TATTTTT-AATATATATAAATT
1 TATTTTTGAATATATATAAATT
869220 GTTTTATGGT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.34, C:0.02, G:0.05, T:0.59
Consensus pattern (23 bp):
TATTTTTGAATATATATAAATTC
Found at i:874756 original size:34 final size:32
Alignment explanation
Indices: 874690--874754 Score: 78
Period size: 32 Copynumber: 1.9 Consensus size: 32
874680 AATGATTATA
*
874690 TATAATCATTAAAAATAATTTAATATCAAAAT
1 TATAATCATTAAAAATAATTTAAGATCAAAAT
874722 TATAATCA-TAAGAAATAATATTTAAGATTCAAA
1 TATAATCATTAA-AAAT-A-ATTTAAGA-TCAAA
874755 TTTTAAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
31 3 0.11
32 12 0.43
33 1 0.04
34 7 0.25
35 5 0.18
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.35
Consensus pattern (32 bp):
TATAATCATTAAAAATAATTTAAGATCAAAAT
Found at i:877620 original size:16 final size:16
Alignment explanation
Indices: 877599--877636 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
877589 TTGATTACTT
*
877599 AATTTTGCATCTCTAA
1 AATTTTGCATCCCTAA
*
877615 AATTTTGTATCCCTAA
1 AATTTTGCATCCCTAA
877631 AATTTT
1 AATTTT
877637 CTAACTTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.32, C:0.16, G:0.05, T:0.47
Consensus pattern (16 bp):
AATTTTGCATCCCTAA
Found at i:881002 original size:41 final size:41
Alignment explanation
Indices: 880957--881037 Score: 144
Period size: 41 Copynumber: 2.0 Consensus size: 41
880947 GTGATTTTTC
*
880957 GTGCTTAAAATGTGAATTCTAGGCAAGGGATATCGGTACCT
1 GTGCTTAAAATGTGAATTCTAGGCAAGGGATATCGATACCT
*
880998 GTGCTTAAAATGTGAATTCTAGGCAAGGGGTATCGATACC
1 GTGCTTAAAATGTGAATTCTAGGCAAGGGATATCGATACC
881038 CATTCAACAG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (41 bp):
GTGCTTAAAATGTGAATTCTAGGCAAGGGATATCGATACCT
Found at i:882786 original size:23 final size:23
Alignment explanation
Indices: 882760--882821 Score: 70
Period size: 23 Copynumber: 2.7 Consensus size: 23
882750 ATCTTATATA
*
882760 GCACTTCAGTGCATTTCTACATG
1 GCACTTCAGTGCAATTCTACATG
* * *
882783 GCACTACGGTGCAATTCTACGTG
1 GCACTTCAGTGCAATTCTACATG
* *
882806 GCACTTCGGTGAAATT
1 GCACTTCAGTGCAATT
882822 ATACGAGCTG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.31
Consensus pattern (23 bp):
GCACTTCAGTGCAATTCTACATG
Found at i:882826 original size:23 final size:23
Alignment explanation
Indices: 882781--882826 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
882771 CATTTCTACA
* *
882781 TGGCACTACGGTGCAATTCTACG
1 TGGCACTACGGTGAAATTATACG
*
882804 TGGCACTTCGGTGAAATTATACG
1 TGGCACTACGGTGAAATTATACG
882827 AGCTGTGGTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (23 bp):
TGGCACTACGGTGAAATTATACG
Found at i:883126 original size:19 final size:19
Alignment explanation
Indices: 883102--883139 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
883092 CATACGATTT
*
883102 ATATGC-TTTGTGTTATGAA
1 ATATGCGTTTATGTT-TGAA
883121 ATATGCGTTTATGTTTGAA
1 ATATGCGTTTATGTTTGAA
883140 TACATTCTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.26, C:0.05, G:0.21, T:0.47
Consensus pattern (19 bp):
ATATGCGTTTATGTTTGAA
Found at i:885819 original size:22 final size:22
Alignment explanation
Indices: 885774--885819 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
885764 TGACTTTTTT
* *
885774 GTCAAAGTCAACGCTGGTCAAA
1 GTCAAAGTCAACGATGATCAAA
* *
885796 GTCAAAGTCAACTATGATCGAA
1 GTCAAAGTCAACGATGATCAAA
885818 GT
1 GT
885820 TAACTATCAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (22 bp):
GTCAAAGTCAACGATGATCAAA
Found at i:892131 original size:10 final size:10
Alignment explanation
Indices: 892116--892150 Score: 61
Period size: 10 Copynumber: 3.5 Consensus size: 10
892106 ATTTCACTTT
892116 GAGTAATGCA
1 GAGTAATGCA
*
892126 GAGTAATGCG
1 GAGTAATGCA
892136 GAGTAATGCA
1 GAGTAATGCA
892146 GAGTA
1 GAGTA
892151 TTCACTCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.37, C:0.09, G:0.34, T:0.20
Consensus pattern (10 bp):
GAGTAATGCA
Found at i:895072 original size:21 final size:21
Alignment explanation
Indices: 895046--895105 Score: 81
Period size: 18 Copynumber: 3.0 Consensus size: 21
895036 GCGTAGAATT
*
895046 TGTCCCCAATGACCACGTAGA
1 TGTCCCGAATGACCACGTAGA
895067 TGTCCCGAATGACCAC-T--A
1 TGTCCCGAATGACCACGTAGA
*
895085 TGTCCCGAAGGACCACGTAGA
1 TGTCCCGAATGACCACGTAGA
895106 CCCTCGACTC
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
18 16 0.47
19 1 0.03
20 1 0.03
21 16 0.47
ACGTcount: A:0.28, C:0.32, G:0.22, T:0.18
Consensus pattern (21 bp):
TGTCCCGAATGACCACGTAGA
Found at i:895947 original size:20 final size:20
Alignment explanation
Indices: 895922--895959 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
895912 TTTCCATTGA
895922 AGTGCATC-AGTGCATTCTAC
1 AGTGCATCGA-TGCATTCTAC
895942 AGTGCATCGATGCATTCT
1 AGTGCATCGATGCATTCT
895960 TTAATAGGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 16 0.94
21 1 0.06
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.32
Consensus pattern (20 bp):
AGTGCATCGATGCATTCTAC
Found at i:896120 original size:21 final size:21
Alignment explanation
Indices: 896096--896149 Score: 108
Period size: 21 Copynumber: 2.6 Consensus size: 21
896086 TTTGAGAGTA
896096 CATCGATGCACATTGAAGATG
1 CATCGATGCACATTGAAGATG
896117 CATCGATGCACATTGAAGATG
1 CATCGATGCACATTGAAGATG
896138 CATCGATGCACA
1 CATCGATGCACA
896150 CAACCCAGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.22
Consensus pattern (21 bp):
CATCGATGCACATTGAAGATG
Found at i:900104 original size:2 final size:2
Alignment explanation
Indices: 900097--900122 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
900087 CTACACAATC
900097 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
900123 GCTATCAGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:900249 original size:24 final size:20
Alignment explanation
Indices: 900200--900257 Score: 71
Period size: 20 Copynumber: 2.7 Consensus size: 20
900190 TTTCCATTGA
*
900200 AGTGCATCGGTGCATTCTAC
1 AGTGCATCGATGCATTCTAC
900220 AGTGCATCGATGCATTCTTTAAC
1 AGTGCATCGATGCATTC--T-AC
900243 AGGTGCATCGATGCA
1 A-GTGCATCGATGCA
900258 CTACCATGCA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
20 16 0.48
22 1 0.03
23 3 0.09
24 13 0.39
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.29
Consensus pattern (20 bp):
AGTGCATCGATGCATTCTAC
Found at i:906007 original size:14 final size:13
Alignment explanation
Indices: 905990--906275 Score: 79
Period size: 12 Copynumber: 20.6 Consensus size: 13
905980 AAATGAAAGT
905990 AAATAAAATAAAGA
1 AAATAAAATAAA-A
*
906004 AAATAGAAGTAAAA
1 AAATA-AAATAAAA
906018 AAAT-AAATAAAA
1 AAATAAAATAAAA
906030 AAATAAGATGAGATAAAA
1 AAAT-A-A--A-ATAAAA
906048 AAATAAAA-AAAA
1 AAATAAAATAAAA
* **
906060 AGTTATAAAATGAATG
1 A--AATAAAAT-AAAA
906076 AAA-AAAATAAAA
1 AAATAAAATAAAA
* *
906088 GAAATGGAAGT--AA
1 -AAAT-AAAATAAAA
*
906101 AAATAAACA-AAGA
1 AAATAAA-ATAAAA
906114 AAAT-AAATAAAA
1 AAATAAAATAAAA
* *
906126 TACATAACATAATAA
1 -AAATAAAATAA-AA
* *
906141 TAATATAAT-AAA
1 AAATAAAATAAAA
906153 AAATAAAATAAATA
1 AAATAAAATAAA-A
*
906167 AAATAAAAATAAAT
1 AAAT-AAAATAAAA
*
906181 AAAGAAAA-AAAGTA
1 AAATAAAATAAA--A
** *
906195 TAAAGGAAAT-AGA
1 -AAATAAAATAAAA
906208 AAATAAATATAAATA
1 AAATAAA-ATAAA-A
* *
906223 AAGAAAAAATATAA
1 AA-ATAAAATAAAA
*
906237 ATATAAAACTACAAA
1 AAATAAAA-TA-AAA
906252 AAATAAAGAGATAAAA
1 AAAT-AA-A-ATAAAA
906268 AAATAAAA
1 AAATAAAA
906276 AATAATGAAG
Statistics
Matches: 199, Mismatches: 36, Indels: 75
0.64 0.12 0.24
Matches are distributed among these distances:
11 3 0.02
12 44 0.22
13 35 0.18
14 42 0.21
15 42 0.21
16 17 0.09
17 5 0.03
18 11 0.06
ACGTcount: A:0.73, C:0.02, G:0.08, T:0.17
Consensus pattern (13 bp):
AAATAAAATAAAA
Found at i:906080 original size:32 final size:29
Alignment explanation
Indices: 906013--906087 Score: 89
Period size: 32 Copynumber: 2.4 Consensus size: 29
906003 AAAATAGAAG
*
906013 TAAAAAAATAAATAAAAAAATAAGATGAGA
1 TAAAAAAATAAA-AAAAAAATAAAATGAGA
906043 TAAAAAAATAAAAAAAAAGTTATAAAATGA-A
1 TAAAAAAATAAAAAAAAA---ATAAAATGAGA
906074 TGAAAAAAATAAAA
1 T-AAAAAAATAAAA
906088 GAAATGGAAG
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
29 6 0.15
30 12 0.30
31 2 0.05
32 20 0.50
ACGTcount: A:0.75, C:0.00, G:0.08, T:0.17
Consensus pattern (29 bp):
TAAAAAAATAAAAAAAAAATAAAATGAGA
Found at i:906148 original size:5 final size:5
Alignment explanation
Indices: 906113--906183 Score: 53
Period size: 5 Copynumber: 14.6 Consensus size: 5
906103 ATAAACAAAG
* * *
906113 AAAAT -AAAT AAAAT -ACAT AACAT AATAAT AATAT AATAA- AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AA-AAT AAAAT AA-AAT AAAAT AAAAT
906162 -AAAT AAAAT AAAA- ATAAAT AAA
1 AAAAT AAAAT AAAAT A-AAAT AAA
906184 GAAAAAAAGT
Statistics
Matches: 54, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
4 14 0.26
5 34 0.63
6 6 0.11
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.23
Consensus pattern (5 bp):
AAAAT
Found at i:906158 original size:21 final size:21
Alignment explanation
Indices: 906100--906275 Score: 87
Period size: 23 Copynumber: 8.2 Consensus size: 21
906090 AATGGAAGTA
*
906100 AAAATAAACAAAGAAAATAAAT
1 AAAATAAA-AAATAAAATAAAT
*
906122 AAAATACATAACATAATAAT-AAT
1 AAAATA-A-AAAATAA-AATAAAT
*
906145 ATAATAAAAAATAAAATAAAT
1 AAAATAAAAAATAAAATAAAT
*
906166 AAAAT-AAAAAT-AAATAAAG
1 AAAATAAAAAATAAAATAAAT
** **
906185 AAAA-AAAGTATAAAGGAAAT
1 AAAATAAAAAATAAAATAAAT
* * *
906205 AGAA-AATAAATATAAATAAAGAA
1 AAAATAAAAAATA-AAAT-AA-AT
*
906228 AAAATATAAATATAAAACTACAA-
1 AAAATA-AAAAATAAAA-TA-AAT
*
906251 AAAATAAAGAGATAAAA-AAAT
1 AAAATAAA-AAATAAAATAAAT
906272 AAAA
1 AAAA
906276 AATAATGAAG
Statistics
Matches: 117, Mismatches: 22, Indels: 31
0.69 0.13 0.18
Matches are distributed among these distances:
19 15 0.13
20 24 0.21
21 20 0.17
22 11 0.09
23 30 0.26
24 10 0.09
25 7 0.06
ACGTcount: A:0.74, C:0.03, G:0.05, T:0.18
Consensus pattern (21 bp):
AAAATAAAAAATAAAATAAAT
Found at i:906189 original size:15 final size:14
Alignment explanation
Indices: 906099--906190 Score: 55
Period size: 15 Copynumber: 6.4 Consensus size: 14
906089 AAATGGAAGT
*
906099 AAAAATAAA-CAAA
1 AAAAATAAATAAAA
*
906112 GAAAATAAAT-AAA
1 AAAAATAAATAAAA
* * *
906125 ATACATAACAT-AAT
1 AAAAATAA-ATAAAA
*
906139 AATAATATAATAAAAA
1 AAAAATA-AAT-AAAA
906155 ATAAAATAAATAAAA
1 A-AAAATAAATAAAA
906170 TAAAAATAAATAAAGA
1 -AAAAATAAATAAA-A
906186 AAAAA
1 AAAAA
906191 AGTATAAAGG
Statistics
Matches: 61, Mismatches: 10, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
13 16 0.26
14 10 0.16
15 22 0.36
16 8 0.13
17 5 0.08
ACGTcount: A:0.76, C:0.03, G:0.02, T:0.18
Consensus pattern (14 bp):
AAAAATAAATAAAA
Found at i:906198 original size:39 final size:37
Alignment explanation
Indices: 906076--906275 Score: 142
Period size: 35 Copynumber: 5.3 Consensus size: 37
906066 AAAATGAATG
* * * *
906076 AAAAAAATAAAAGAAATGGAAGTAAAAATAAACAAAGA
1 AAAAAAATAAAATAAAT-AAAATAAAAATAAATAAAGA
* * * * *
906114 AAATAAATAAAATACATAACATAATAAT-AATATA-A
1 AAAAAAATAAAATAAATAAAATAAAAATAAATAAAGA
*
906149 TAAAAAATAAAATAAATAAAATAAAAATAAATAAAGA
1 AAAAAAATAAAATAAATAAAATAAAAATAAATAAAGA
** *
906186 AAAAAAGTATAAAGGAAATAGAAAATAAATATAAATAAAGA
1 AAAAAA--ATAAAATAAAT--AAAATAAAAATAAATAAAGA
* *
906227 AAAAATAT-AAAT--ATAAAACTACAAA-AAATAAAGAGA
1 AAAAAAATAAAATAAATAAAA-TAAAAATAAAT-AA-AGA
906263 TAAAAAAATAAAA
1 -AAAAAAATAAAA
906276 AATAATGAAG
Statistics
Matches: 126, Mismatches: 25, Indels: 22
0.73 0.14 0.13
Matches are distributed among these distances:
34 8 0.06
35 30 0.24
36 14 0.11
37 20 0.16
38 19 0.15
39 11 0.09
41 24 0.19
ACGTcount: A:0.73, C:0.03, G:0.07, T:0.17
Consensus pattern (37 bp):
AAAAAAATAAAATAAATAAAATAAAAATAAATAAAGA
Found at i:906894 original size:24 final size:24
Alignment explanation
Indices: 906849--906895 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
906839 CAAGGTGTAA
* * *
906849 AAAAAGAATAATAAGTATTAAAAT
1 AAAAAGAATAAAAAATAATAAAAT
*
906873 AAAAAGATTAAAAAATAATAAAA
1 AAAAAGAATAAAAAATAATAAAA
906896 AGGATTAAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.72, C:0.00, G:0.06, T:0.21
Consensus pattern (24 bp):
AAAAAGAATAAAAAATAATAAAAT
Found at i:906912 original size:33 final size:34
Alignment explanation
Indices: 906848--906921 Score: 78
Period size: 34 Copynumber: 2.2 Consensus size: 34
906838 ACAAGGTGTA
* * * *
906848 AAAAAAGAATAATAAGTATTAAAATAAAAAGATT
1 AAAAAATAATAAAAAGGATTAAAATAAAAAGAAT
**
906882 AAAAAATAATAAAAAGGATT-AAATCGAAAGAAT
1 AAAAAATAATAAAAAGGATTAAAATAAAAAGAAT
*
906915 ATAAAAT
1 AAAAAAT
906922 TAGGGGCTAA
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
33 16 0.48
34 17 0.52
ACGTcount: A:0.68, C:0.01, G:0.09, T:0.22
Consensus pattern (34 bp):
AAAAAATAATAAAAAGGATTAAAATAAAAAGAAT
Found at i:908044 original size:43 final size:43
Alignment explanation
Indices: 907973--908054 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 43
907963 AATGTATCCA
** * *
907973 AATAAAACAAGTTAATATGTACTAATATGTAACGTGTATATAC
1 AATAAAACAAGTTAATATAAAATAATATGTAACGCGTATATAC
* *
908016 AATAAAACAAGTTAATGTAAAATGATATGTAACGCGTAT
1 AATAAAACAAGTTAATATAAAATAATATGTAACGCGTAT
908055 GTAATAATAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.48, C:0.09, G:0.13, T:0.30
Consensus pattern (43 bp):
AATAAAACAAGTTAATATAAAATAATATGTAACGCGTATATAC
Found at i:908796 original size:84 final size:84
Alignment explanation
Indices: 908689--909484 Score: 726
Period size: 84 Copynumber: 9.5 Consensus size: 84
908679 AATTTTATTC
* * * * *
908689 ACAGATAACCCTTCTTA-CCTTGAGCTATACTGTAAATGATGTGCCTTGGGGCTGAGCGTAGTCG
1 ACAGATAACCCTTC-TAGCCTTGAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGTGTAATCG
* *
908753 AACTCAAATGTCTTTGGTTG
65 AACTCGAAGGTCTTTGGTTG
* * * *
908773 ACAGATAACCCTTCTAGCCTTGAGTTATGCTACAAATGATGTGCCCTCGAAGCTGAGTGTAATCG
1 ACAGATAACCCTTCTAGCCTTGAGCTATGCTGCAAATGATGTG-CCTTGGAGCTGAGTGTAATCG
*
908838 AACTCGAAGGTATTTGGTTG
65 AACTCGAAGGTCTTTGGTTG
* * * * * * * * **
908858 GCAGATAACCCTTCTTGACTTAAGCTATGCTGCAAATGATGTGCCTTTGATCTGAGCGTAGTTTA
1 ACAGATAACCCTTCTAGCCTTGAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGTGTAATCGA
908923 ACTCGAAGGTCTTT-GTTG
66 ACTCGAAGGTCTTTGGTTG
* * * * * *
908941 GCAGATAACTCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCTCTCGAAGCTGAGTGTAATCA
1 ACAGATAACCCTTCTAGCCTTGAGCTATGCTGCAAATGATGTGC-CTTGGAGCTGAGTGTAATCG
909006 AACTCGAAGGTCTTTGGTTG
65 AACTCGAAGGTCTTTGGTTG
* * * * * * *
909026 GCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATATGTCTTTGAGCTGAGTGTAATCGA
1 ACAGATAACCCTTCTAGCCTTGAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGTGTAATCGA
**
909091 ACTTAAAGGTCTTT-GTTG
66 ACTCGAAGGTCTTTGGTTG
* * * ** * ** *
909109 ATAGATAACCCTTCTAGCCTTCAGTTATATTGTAAATGATGTGCCCTTAAAGCTGAGTGTAATAG
1 ACAGATAACCCTTCTAGCCTTGAGCTATGCTGCAAATGATGTG-CCTTGGAGCTGAGTGTAATCG
*
909174 AACTCGAAGGTCATTGGTTGG
65 AACTCGAAGGTCTTTGGTT-G
* * * * * * * * * *
909195 A-AGATAGCCCTTCTCGACTTAAGCTATGCTGCAACTGATGTACCTTTGAGCTGAGCGTAGTCAA
1 ACAGATAACCCTTCTAGCCTTGAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGTGTAATCGA
909259 ACTCGAAGGTCTTT-GTTG
66 ACTCGAAGGTCTTTGGTTG
* * * * * * *
909277 GCAGATAACCCTTCTAGCCTTGAGTTATGCTACAAATGATGTGCCCTCGAAGATTAGTGTAATCG
1 ACAGATAACCCTTCTAGCCTTGAGCTATGCTGCAAATGATGTG-CCTTGGAGCTGAGTGTAATCG
* * *
909342 AACTTGAAGATCTTTTGGTGG
65 AACTCGAAGGTC-TTTGGTTG
* * * * * *** * *
909363 A-AGATAGCCCTTTTAGCCTT-AGGCTATGCTACAAATGATATGCCTTAGAGCTGAACATAGTCA
1 ACAGATAACCCTTCTAGCCTTGA-GCTATGCTGCAAATGATGTGCCTTGGAGCTGAGTGTAATCG
909426 AACTCGAAGGTCTTTTGG-TG
65 AACTCGAAGGTC-TTTGGTTG
* * * *
909446 GCATATAGCCCTTCTAGCCTTGAGCTATGCTGAAAATGA
1 ACAGATAACCCTTCTAGCCTTGAGCTATGCTGCAAATGA
909485 ACACGATATC
Statistics
Matches: 568, Mismatches: 130, Indels: 28
0.78 0.18 0.04
Matches are distributed among these distances:
82 1 0.00
83 119 0.21
84 259 0.46
85 184 0.32
86 5 0.01
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (84 bp):
ACAGATAACCCTTCTAGCCTTGAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGTGTAATCGA
ACTCGAAGGTCTTTGGTTG
Found at i:908992 original size:168 final size:169
Alignment explanation
Indices: 908690--909484 Score: 990
Period size: 168 Copynumber: 4.7 Consensus size: 169
908680 ATTTTATTCA
* * * * * *
908690 CAGATAACCCTTCTT-ACCTTGAGCTATACTGTAAATGATGTGCCTTGGGGCTGAGCGTAGTCGA
1 CAGATAACCCTTCTTGA-CTTAAGCTATGCTGCAAATGATGTGCCTTTGAGCTGAGCGTAGTCAA
* * * *
908754 ACTCAAATGTCTTTGGTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTACAAATGATGTGCCC
65 ACTCGAAGGTCTTT-GTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCC
908819 TCGAAGCTGAGTGTAATCGAACTCGAAGGT-ATTTGGTTGG
129 TCGAAGCTGAGTGTAATCGAACTCGAAGGTCATTTGGTTGG
* **
908859 CAGATAACCCTTCTTGACTTAAGCTATGCTGCAAATGATGTGCCTTTGATCTGAGCGTAGTTTAA
1 CAGATAACCCTTCTTGACTTAAGCTATGCTGCAAATGATGTGCCTTTGAGCTGAGCGTAGTCAAA
* *
908924 CTCGAAGGTCTTTGTTGGCAGATAACTCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCTCTC
66 CTCGAAGGTCTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCCTC
*
908989 GAAGCTGAGTGTAATCAAACTCGAAGGTC-TTTGGTTGG
131 GAAGCTGAGTGTAATCGAACTCGAAGGTCATTTGGTTGG
* * * * * *
909027 CAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATATGTCTTTGAGCTGAGTGTAATCGAA
1 CAGATAACCCTTCTTGACTTAAGCTATGCTGCAAATGATGTGCCTTTGAGCTGAGCGTAGTCAAA
** ** * ** * *
909092 CTTAAAGGTCTTTGTTGATAGATAACCCTTCTAGCCTTCAGTTATATTGTAAATGATGTGCCCTT
66 CTCGAAGGTCTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCCTC
* *
909157 AAAGCTGAGTGTAATAGAACTCGAAGGTCA-TTGGTTGG
131 GAAGCTGAGTGTAATCGAACTCGAAGGTCATTTGGTTGG
* * * * *
909195 AAGATAGCCCTTCTCGACTTAAGCTATGCTGCAACTGATGTACCTTTGAGCTGAGCGTAGTCAAA
1 CAGATAACCCTTCTTGACTTAAGCTATGCTGCAAATGATGTGCCTTTGAGCTGAGCGTAGTCAAA
*
909260 CTCGAAGGTCTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTACAAATGATGTGCCCTC
66 CTCGAAGGTCTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCCTC
* * * * *
909325 GAAGATTAGTGTAATCGAACTTGAAGATCTTTTGG-TGG
131 GAAGCTGAGTGTAATCGAACTCGAAGGTCATTTGGTTGG
* * * * * * * * *
909363 AAGATAGCCCTT-TTAGCCTTAGGCTATGCTACAAATGATATGCCTTAGAGCTGAACATAGTCAA
1 CAGATAACCCTTCTT-GACTTAAGCTATGCTGCAAATGATGTGCCTTTGAGCTGAGCGTAGTCAA
* * * * *
909427 ACTCGAAGGTCTTTTGGTGGCATATAGCCCTTCTAGCCTTGAGCTATGCTGAAAATGA
65 ACTCGAAGGTC-TTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGA
909485 ACACGATATC
Statistics
Matches: 541, Mismatches: 79, Indels: 12
0.86 0.12 0.02
Matches are distributed among these distances:
167 1 0.00
168 429 0.79
169 110 0.20
170 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (169 bp):
CAGATAACCCTTCTTGACTTAAGCTATGCTGCAAATGATGTGCCTTTGAGCTGAGCGTAGTCAAA
CTCGAAGGTCTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCCTC
GAAGCTGAGTGTAATCGAACTCGAAGGTCATTTGGTTGG
Found at i:911232 original size:95 final size:94
Alignment explanation
Indices: 911060--911255 Score: 279
Period size: 95 Copynumber: 2.1 Consensus size: 94
911050 GGACAACTCA
* * * * *
911060 ATATGTAAACACCTTTATCAGGTTAGCTGAATATTATCCATAAATCCGGGGCGTTTAACCAATTG
1 ATATATAATCACCTTTATCAGGCTAGCTGAATATTATCCATAAATCCGAGGCATTTAACCAATTG
*
911125 CCTTAGAGGGACAGCTCAAACTTTATTGT
66 CCTTAGAGGGACAACTCAAACTTTATTGT
*
911154 ATAGTATAATCACCTTTATCAGGCTAGCTGAATATTATCCATAAAGT-CGAGGCATTTATCCAAT
1 ATA-TATAATCACCTTTATCAGGCTAGCTGAATATTATCCATAAA-TCCGAGGCATTTAACCAAT
*
911218 TG-CTCTAGAGGGACAACTCAAGCTTTATTGT
64 TGCCT-TAGAGGGACAACTCAAACTTTATTGT
911249 ATATATA
1 ATATATA
911256 TAATATTATA
Statistics
Matches: 91, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
94 9 0.10
95 81 0.89
96 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Consensus pattern (94 bp):
ATATATAATCACCTTTATCAGGCTAGCTGAATATTATCCATAAATCCGAGGCATTTAACCAATTG
CCTTAGAGGGACAACTCAAACTTTATTGT
Found at i:914726 original size:4 final size:4
Alignment explanation
Indices: 914717--914908 Score: 69
Period size: 4 Copynumber: 46.8 Consensus size: 4
914707 AATAGAAGGA
* * * *
914717 AAAT AAAT AAAT GAAT GAAT AAAT AAAT AAGAT GAGAT AAAA AAAT AAA-
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA-AT -AAAT AAAT AAAT AAAT
** * * *
914766 AAAGT -AAT AAAAT GAACG AAAA AAAT AAAAG AAAT GGAAGT -AA- AAAT
1 AAA-T AAAT -AAAT -AAAT AAAT AAAT -AAAT AAAT --AAAT AAAT AAAT
* * *
914813 AAAT AAAGA AAAT AAAT AAAAT ACAG AACAT AGTAAT -AAT ATAAT AAAT
1 AAAT AAA-T AAAT AAAT -AAAT AAAT AA-AT A--AAT AAAT A-AAT AAAT
* *
914862 AAAT AAAC AAAA AAAT -AA- AAAT AAAT --AT AAAT AAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
914906 AAA
1 AAA
914909 GTATAAAGGA
Statistics
Matches: 141, Mismatches: 25, Indels: 44
0.67 0.12 0.21
Matches are distributed among these distances:
2 2 0.01
3 14 0.10
4 93 0.66
5 25 0.18
6 6 0.04
7 1 0.01
ACGTcount: A:0.71, C:0.02, G:0.08, T:0.19
Consensus pattern (4 bp):
AAAT
Found at i:914826 original size:13 final size:13
Alignment explanation
Indices: 914808--914832 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
914798 AATGGAAGTA
914808 AAAATAAATAAAG
1 AAAATAAATAAAG
914821 AAAATAAATAAA
1 AAAATAAATAAA
914833 ATACAGAACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAATAAATAAAG
Found at i:914951 original size:45 final size:45
Alignment explanation
Indices: 914874--914961 Score: 115
Period size: 45 Copynumber: 2.0 Consensus size: 45
914864 ATAAACAAAA
* * *
914874 AAATAAAAATAAATATAAATAAATAAATAAATA-AAGTATAAAGG
1 AAATAAAAATAAATATAAATAAAGAAAAAAATATAAATATAAAGG
* *
914918 AAATAGAAAATAAGTATAGATAAAGAAAAAAATATAAATATAAA
1 AAATA-AAAATAAATATAAATAAAGAAAAAAATATAAATATAAA
914962 ACTACAGAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
44 5 0.14
45 24 0.65
46 8 0.22
ACGTcount: A:0.70, C:0.00, G:0.08, T:0.22
Consensus pattern (45 bp):
AAATAAAAATAAATATAAATAAAGAAAAAAATATAAATATAAAGG
Found at i:915306 original size:3 final size:3
Alignment explanation
Indices: 915291--915341 Score: 86
Period size: 3 Copynumber: 17.3 Consensus size: 3
915281 GAAAAACAAT
*
915291 ATA ATA A-A GTA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
915338 ATA A
1 ATA A
915342 AAGTATAATA
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
2 1 0.02
3 44 0.98
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:916717 original size:43 final size:43
Alignment explanation
Indices: 916646--916730 Score: 107
Period size: 43 Copynumber: 2.0 Consensus size: 43
916636 AATGTATCCA
** * **
916646 AATAAAACAAGTTAATATGTACTAATATGTAACTTGTATATAC
1 AATAAAACAAGTTAATATAAAATAATATGTAACACGTATATAC
* *
916689 AATAAAACAAGTTAATGTAAAATGATATGTAACACGTATATA
1 AATAAAACAAGTTAATATAAAATAATATGTAACACGTATATA
916731 TTAATATAAT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.49, C:0.08, G:0.11, T:0.32
Consensus pattern (43 bp):
AATAAAACAAGTTAATATAAAATAATATGTAACACGTATATAC
Found at i:930089 original size:3 final size:3
Alignment explanation
Indices: 930083--930160 Score: 74
Period size: 3 Copynumber: 27.0 Consensus size: 3
930073 CATTTTGTTT
** * *
930083 TTA TTA TTA TTA TTA AAA TTA TTA TTA TTA TTA ATA TT- GTA TATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
*
930128 TTA TTA -TA TTA -TA TTA TTA TTA -AA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
930161 CAAACAGGCC
Statistics
Matches: 60, Mismatches: 10, Indels: 10
0.75 0.12 0.12
Matches are distributed among these distances:
2 6 0.10
3 51 0.85
4 3 0.05
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:930115 original size:24 final size:25
Alignment explanation
Indices: 930083--930160 Score: 90
Period size: 24 Copynumber: 3.1 Consensus size: 25
930073 CATTTTGTTT
930083 TTATTATTATTATTA-AAATTATTA
1 TTATTATTATTATTATAAATTATTA
* *
930107 TTATTATTAATATTGTATATATTATTA
1 TTATTATTATTA-T-TATAAATTATTA
930134 -TATTA-TATTATTATTAAATTATTA
1 TTATTATTATTATTA-TAAATTATTA
930158 TTA
1 TTA
930161 CAAACAGGCC
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
23 2 0.04
24 21 0.47
25 7 0.16
26 7 0.16
27 8 0.18
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.59
Consensus pattern (25 bp):
TTATTATTATTATTATAAATTATTA
Found at i:936011 original size:12 final size:12
Alignment explanation
Indices: 935994--936025 Score: 57
Period size: 11 Copynumber: 2.8 Consensus size: 12
935984 GTATTATGCT
935994 AGGAAAAAAAGA
1 AGGAAAAAAAGA
936006 AGG-AAAAAAGA
1 AGGAAAAAAAGA
936017 AGGAAAAAA
1 AGGAAAAAA
936026 GAAAAAAGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 11 0.58
12 8 0.42
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (12 bp):
AGGAAAAAAAGA
Found at i:936023 original size:10 final size:11
Alignment explanation
Indices: 935998--936028 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
935988 TATGCTAGGA
935998 AAAAAAGAAGG
1 AAAAAAGAAGG
936009 AAAAAAGAAGG
1 AAAAAAGAAGG
936020 AAAAAAGAA
1 AAAAAAGAA
936029 AAAAGGAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (11 bp):
AAAAAAGAAGG
Found at i:936031 original size:18 final size:18
Alignment explanation
Indices: 935994--936042 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 18
935984 GTATTATGCT
*
935994 AGGAAAAAAAGAAGGAAAAA
1 AGGAAGAAAA-AA-GAAAAA
936014 A-GAAGGAAAAAAGAAAAA
1 AGGAA-GAAAAAAGAAAAA
936032 AGGAAGAAAAA
1 AGGAAGAAAAA
936043 TTTGAACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 13 0.50
19 8 0.31
20 5 0.19
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (18 bp):
AGGAAGAAAAAAGAAAAA
Found at i:938488 original size:31 final size:31
Alignment explanation
Indices: 938450--938512 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
938440 GTACATATAA
938450 AATCTGTCAACTCTACAATTGATGAATTCAG
1 AATCTGTCAACTCTACAATTGATGAATTCAG
*
938481 AATCTGTCAACTCTGCAATTGATGAATTCAG
1 AATCTGTCAACTCTACAATTGATGAATTCAG
938512 A
1 A
938513 CCACATCTCT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.32
Consensus pattern (31 bp):
AATCTGTCAACTCTACAATTGATGAATTCAG
Found at i:940783 original size:22 final size:22
Alignment explanation
Indices: 940754--940808 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
940744 ATCTACACTC
940754 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
*
940776 TTTAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
940798 TTCAAAGATGA
1 TTCAAAGATGA
940809 AAGCTTTATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.40
Consensus pattern (22 bp):
TTCAAAGATGATAGATTCTCTT
Found at i:941602 original size:170 final size:167
Alignment explanation
Indices: 941322--941819 Score: 829
Period size: 170 Copynumber: 3.0 Consensus size: 167
941312 AAAATTAGCA
*
941322 TTATCTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTTCAAAAAAACAGAATGAGAAAAA
1 TTATCTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTT-AAAAAAACAGAATGAGAAAAC
* *
941387 TATTTTCATAGTTTCTCATTTTATCTTTTCTAAAATGAAATTGTTGAAAAGTAAGAAAATGATTT
65 GATTTTCATAGTTTCTCATTTTATCTTTTCTAAAATGAAATTGTTGAAAAGTAAGAAAACGATTT
941452 TCTTAGTTTTTTTACTTAGTAAACTATTTCCAACAGCC
130 TCTTAGTTTTTTTACTTAGTAAACTATTTCCAACAGCC
941490 TTATCTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTTAAAAAAAAAACAGAATGAGAAA
1 TTATCTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTT---AAAAAAACAGAATGAGAAA
941555 ACGATTTTCATAGTTTCTCATTTTATCTTTTCTAAAATGAAATTGTTGAAAAGTAAGAAAACGAT
63 ACGATTTTCATAGTTTCTCATTTTATCTTTTCTAAAATGAAATTGTTGAAAAGTAAGAAAACGAT
941620 TTTCTTAGTTTTTTTACTTAGTAAACTATTTCCAACAGCC
128 TTTCTTAGTTTTTTTACTTAGTAAACTATTTCCAACAGCC
** *
941660 TTATCTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTT-TGAAAA-ATAATGAGAAAACG
1 TTATCTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTTAAAAAAACAGAATGAGAAAACG
* ** *
941723 ATTTCCATAGTTTCTCATTCAATCTTTTTTAAAAATGAAATTGTTGAAAAGTAAGAAAACGATTT
66 ATTTTCATAGTTTCTCATTTTATCTTTTCT-AAAATGAAATTGTTGAAAAGTAAGAAAACGATTT
*
941788 CCTTAGTTTTTTTTACTTAGTAAACTATTTCC
130 TCTTAG-TTTTTTTACTTAGTAAACTATTTCC
941820 CACATCTGTA
Statistics
Matches: 314, Mismatches: 12, Indels: 9
0.94 0.04 0.03
Matches are distributed among these distances:
165 39 0.12
166 43 0.14
167 25 0.08
168 43 0.14
170 164 0.52
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (167 bp):
TTATCTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTTAAAAAAACAGAATGAGAAAACG
ATTTTCATAGTTTCTCATTTTATCTTTTCTAAAATGAAATTGTTGAAAAGTAAGAAAACGATTTT
CTTAGTTTTTTTACTTAGTAAACTATTTCCAACAGCC
Found at i:942319 original size:75 final size:76
Alignment explanation
Indices: 941822--942531 Score: 1212
Period size: 76 Copynumber: 9.4 Consensus size: 76
941812 CTATTTCCCA
*
941822 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
941887 AGCCTTAGGGT
66 AGCCTTAGGGT
941898 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
941963 AGCCTTAGGGT
66 AGCCTTAGGGT
* * *
941974 CATCTGTAAGTCTTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGATCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
942039 AGCCTTAGGGT
66 AGCCTTAGGGT
*
942050 CATCTGTAAGTCCTACAATGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
942115 AGCCTTAGGGT
66 AGCCTTAGGGT
* * *
942126 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGTCTTTGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
942191 AGCCTTAGGGT
66 AGCCTTAGGGT
*
942202 CATCTTTAAGTCCTACAGTGCATGATGTTTCCAAAAAG-CTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
942266 A-CCTTCGGGT
66 AGCCTTAGGGT
942276 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
942341 A-CCTTCGGGT
66 AGCCTTAGGGT
**
942351 CATCTGTAAGTCCTGTAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
942416 A-CCTTCGGGT
66 AGCCTTAGGGT
* * * *
942426 CATCTGTAAGTCCTGCAGTGCATGATGTTTACAAAAAGCCTTCGGGAGATTTTTGATGTTTTTAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
942491 AGCCTTAGGGT
66 AGCCTTAGGGT
* *
942502 CATCCGTAAGTCCTACAGTGCATGGTGTTT
1 CATCTGTAAGTCCTACAGTGCATGATGTTT
942532 TTAGGACCTC
Statistics
Matches: 605, Mismatches: 27, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
74 45 0.07
75 197 0.33
76 363 0.60
ACGTcount: A:0.23, C:0.19, G:0.22, T:0.35
Consensus pattern (76 bp):
CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
AGCCTTAGGGT
Done.