Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007884.1 Hibiscus syriacus cultivar Beakdansim tig00110264_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2814991
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 13
Found at i:650177 original size:21 final size:21
Alignment explanation
Indices: 650152--650194 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
650142 AATACTAGAG
*
650152 GGGTATCGATACCCTGCTACA
1 GGGTACCGATACCCTGCTACA
650173 GGGTACCGATACCCTGCTACA
1 GGGTACCGATACCCTGCTACA
650194 G
1 G
650195 TACTTCCGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (21 bp):
GGGTACCGATACCCTGCTACA
Found at i:658749 original size:21 final size:21
Alignment explanation
Indices: 658723--658879 Score: 144
Period size: 21 Copynumber: 7.5 Consensus size: 21
658713 GTTTCCAGAT
**
658723 TCGCAATGCGATTTTGGACTA
1 TCGCAATGCGAACTTGGACTA
* *
658744 TCGCAATGCGATA-GTCGACTA
1 TCGCAATGCGA-ACTTGGACTA
658765 TCGCAATGCGAACTTGGACTA
1 TCGCAATGCGAACTTGGACTA
* *
658786 TCGCAATGTC-AA-TATGTA-AA
1 TCGCAATG-CGAACT-TGGACTA
* *
658806 TCGCAATGCGATA-GTCGACTA
1 TCGCAATGCGA-ACTTGGACTA
658827 TCGCAATGCGAACTTGGACTA
1 TCGCAATGCGAACTTGGACTA
* *
658848 TCGCAATTCGAACTTCGACTA
1 TCGCAATGCGAACTTGGACTA
*
658869 TCGCATTGCGA
1 TCGCAATGCGA
658880 TTTACATATT
Statistics
Matches: 111, Mismatches: 17, Indels: 16
0.77 0.12 0.11
Matches are distributed among these distances:
19 1 0.01
20 15 0.14
21 94 0.85
22 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (21 bp):
TCGCAATGCGAACTTGGACTA
Found at i:658791 original size:83 final size:83
Alignment explanation
Indices: 658701--658941 Score: 197
Period size: 83 Copynumber: 2.9 Consensus size: 83
658691 CGATCTCCGG
* * * ** *
658701 TATCGCAA-ATCAGTTTCCAGATTCGCAATGCGATTTTGGACTATCGCAATGCGATA-GTCGACT
1 TATCGCAATATCAATATCCA-AATCGCAATGCGATAGTCGACTATCGCAATGCGA-ACGTCGACT
*
658764 ATCGCAATGCGAACTTGGAC
64 ATCGCAATGCGAACTTCGAC
* ** * *
658784 TATCGCAATGTCAATATGTAAATCGCAATGCGATAGTCGACTATCGCAATGCGAACTTGGACTAT
1 TATCGCAATATCAATATCCAAATCGCAATGCGATAGTCGACTATCGCAATGCGAACGTCGACTAT
*
658849 CGCAATTCGAACTTCGAC
66 CGCAATGCGAACTTCGAC
* * * * * * *
658867 TATCGC-AT-TGCGATTTACATATTCGCATTGCGATAGTCGAAGT-TCGCATTGCGATA-GTCGA
1 TATCGCAATAT-CAATATCCA-AATCGCAATGCGATAGTCG-ACTATCGCAATGCGA-ACGTCGA
*
658928 CTATCGCATTGCGA
62 CTATCGCAATGCGA
658942 TTTACATAAT
Statistics
Matches: 127, Mismatches: 25, Indels: 12
0.77 0.15 0.07
Matches are distributed among these distances:
81 1 0.01
82 8 0.06
83 109 0.86
84 9 0.07
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (83 bp):
TATCGCAATATCAATATCCAAATCGCAATGCGATAGTCGACTATCGCAATGCGAACGTCGACTAT
CGCAATGCGAACTTCGAC
Found at i:658893 original size:62 final size:60
Alignment explanation
Indices: 658763--658961 Score: 158
Period size: 62 Copynumber: 3.2 Consensus size: 60
658753 GATAGTCGAC
* * *
658763 TATCGCAATGCGAACTTGGACTATCGCAATGTC-AATAT-GTA-AATCGCAATGCGATAGT-CGA
1 TATCGCAATGCGAACTTGGACTATCGCAAT-TCGAAT-TCG-ACTATCGCATTGCGAT-TTAC-A
658824 CTATCGCAATGCGAACTTGGACTATCGCAATTCGAACTTCGACTATCGCATTGCGATTTACA
1 -TATCGCAATGCGAACTTGGACTATCGCAATTCGAA-TTCGACTATCGCATTGCGATTTACA
* * * * * *
658886 TATTCGCATTGCGATAGTCGAAGT-TCGC-ATTGCGATAGTCGACTATCGCATTGCGATTTACA
1 TA-TCGCAATGCGA-ACTTGGACTATCGCAATT-CGA-ATTCGACTATCGCATTGCGATTTACA
*
658948 TAATCGCATTGCGA
1 T-ATCGCAATGCGA
658962 TAGTCGACTA
Statistics
Matches: 118, Mismatches: 9, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
61 7 0.06
62 89 0.75
63 22 0.19
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (60 bp):
TATCGCAATGCGAACTTGGACTATCGCAATTCGAATTCGACTATCGCATTGCGATTTACA
Found at i:658955 original size:41 final size:41
Alignment explanation
Indices: 658910--659024 Score: 187
Period size: 41 Copynumber: 2.8 Consensus size: 41
658900 TAGTCGAAGT
658910 TCGCATTGCGATAGTCGACTATCGCATTGCGATTTACATAA
1 TCGCATTGCGATAGTCGACTATCGCATTGCGATTTACATAA
*
658951 TCGCATTGCGATAGTCGACTATCGCATTGCGATTTACATAT
1 TCGCATTGCGATAGTCGACTATCGCATTGCGATTTACATAA
* *
658992 TCGCATTGCGATAGTCCAAGT-TCGCATTGCGAT
1 TCGCATTGCGATAGT-CGACTATCGCATTGCGAT
659025 AGTCCAAAAT
Statistics
Matches: 70, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
41 67 0.96
42 3 0.04
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.32
Consensus pattern (41 bp):
TCGCATTGCGATAGTCGACTATCGCATTGCGATTTACATAA
Found at i:658962 original size:62 final size:62
Alignment explanation
Indices: 658862--658983 Score: 210
Period size: 62 Copynumber: 2.0 Consensus size: 62
658852 AATTCGAACT
* *
658862 TCGACTATCGCATTGCGATTTACATATTCGCATTGCGATAGTCGAAGT-TCGCATTGCGATAG
1 TCGACTATCGCATTGCGATTTACATAATCGCATTGCGATAGTCG-ACTATCGCATTGCGATAG
658924 TCGACTATCGCATTGCGATTTACATAATCGCATTGCGATAGTCGACTATCGCATTGCGAT
1 TCGACTATCGCATTGCGATTTACATAATCGCATTGCGATAGTCGACTATCGCATTGCGAT
658984 TTACATATTC
Statistics
Matches: 57, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
61 2 0.04
62 55 0.96
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (62 bp):
TCGACTATCGCATTGCGATTTACATAATCGCATTGCGATAGTCGACTATCGCATTGCGATAG
Found at i:659017 original size:62 final size:62
Alignment explanation
Indices: 658862--659028 Score: 200
Period size: 62 Copynumber: 2.7 Consensus size: 62
658852 AATTCGAACT
* *
658862 TCGACTATCGCATTGCGATTTACATATTCGCATTGCGATAGTCGAAGTTCGCATTGCGATAG
1 TCGACTATCGCATTGCGATGTACATATTCGCATTGCGATAGTCGAACTTCGCATTGCGATAG
* *
658924 TCGACTATCGCATTGCGATTTACATAATCGCATTGCGATAGTCG-ACTATCGCATTGCGAT--
1 TCGACTATCGCATTGCGATGTACATATTCGCATTGCGATAGTCGAACT-TCGCATTGCGATAG
* *
658984 T-TACATATTCGCATTGCGATAGTCCA-AGTTCGCATTGCGATAGTC
1 TCGAC-TA-TCGCATTGCGAT-GTACATA-TTCGCATTGCGATAGTC
659029 CAAAATCGCA
Statistics
Matches: 94, Mismatches: 6, Indels: 10
0.85 0.05 0.09
Matches are distributed among these distances:
59 2 0.02
60 3 0.03
61 15 0.16
62 74 0.79
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (62 bp):
TCGACTATCGCATTGCGATGTACATATTCGCATTGCGATAGTCGAACTTCGCATTGCGATAG
Found at i:659029 original size:21 final size:20
Alignment explanation
Indices: 658869--659031 Score: 134
Period size: 21 Copynumber: 8.0 Consensus size: 20
658859 ACTTCGACTA
* *
658869 TCGCATTGCGAT-TTACATAT
1 TCGCATTGCGATAGTCCA-AT
*
658889 TCGCATTGCGATAGTCGAAGT
1 TCGCATTGCGATAGTCCAA-T
* *
658910 TCGCATTGCGATAGTCGACT
1 TCGCATTGCGATAGTCCAAT
* * *
658930 ATCGCATTGCGAT-TTACATAA
1 -TCGCATTGCGATAGTCCA-AT
* *
658951 TCGCATTGCGATAGTCGACT
1 TCGCATTGCGATAGTCCAAT
* *
658971 ATCGCATTGCGAT-TTACATAT
1 -TCGCATTGCGATAGTCCA-AT
658992 TCGCATTGCGATAGTCCAAGT
1 TCGCATTGCGATAGTCCAA-T
659013 TCGCATTGCGATAGTCCAA
1 TCGCATTGCGATAGTCCAA
659032 AATCGCAACG
Statistics
Matches: 114, Mismatches: 20, Indels: 17
0.75 0.13 0.11
Matches are distributed among these distances:
20 43 0.38
21 71 0.62
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (20 bp):
TCGCATTGCGATAGTCCAAT
Found at i:659740 original size:21 final size:21
Alignment explanation
Indices: 659714--659906 Score: 244
Period size: 21 Copynumber: 9.2 Consensus size: 21
659704 CACCAGTCGT
659714 TGCGATTTTGGACTATCGCAA
1 TGCGATTTTGGACTATCGCAA
659735 TGCGATTTTGGACTATCGCAA
1 TGCGATTTTGGACTATCGCAA
659756 TGCGATTTTGGACTATCGCAA
1 TGCGATTTTGGACTATCGCAA
659777 TGCGATTTTGGACTATCGCAA
1 TGCGATTTTGGACTATCGCAA
** *
659798 TGCGATAGTCGACTATCGCAA
1 TGCGATTTTGGACTATCGCAA
**
659819 TGCGAACTTGGACTATCGCAA
1 TGCGATTTTGGACTATCGCAA
* * * *
659840 TGCGAATATGTA-AATCGCAA
1 TGCGATTTTGGACTATCGCAA
** *
659860 TGCGATAGTCGACTATCGCAA
1 TGCGATTTTGGACTATCGCAA
** *
659881 TGCGAACTTCGACTATCGCAA
1 TGCGATTTTGGACTATCGCAA
659902 TGCGA
1 TGCGA
659907 ATATGTAAAT
Statistics
Matches: 151, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
20 14 0.09
21 137 0.91
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28
Consensus pattern (21 bp):
TGCGATTTTGGACTATCGCAA
Found at i:659941 original size:62 final size:62
Alignment explanation
Indices: 659728--659933 Score: 304
Period size: 62 Copynumber: 3.3 Consensus size: 62
659718 ATTTTGGACT
** * ** * * * *
659728 ATCGCAATGCGATTTTGGACTATCGCAATGCGATTTTGGACTATCGCAATGCGATTTTGGACT
1 ATCGCAATGCGATAGTCGACTATCGCAATGCGAACTTGGACTATCGCAATGCGAATATGTA-A
659791 ATCGCAATGCGATAGTCGACTATCGCAATGCGAACTTGGACTATCGCAATGCGAATATGTAA
1 ATCGCAATGCGATAGTCGACTATCGCAATGCGAACTTGGACTATCGCAATGCGAATATGTAA
*
659853 ATCGCAATGCGATAGTCGACTATCGCAATGCGAACTTCGACTATCGCAATGCGAATATGTAA
1 ATCGCAATGCGATAGTCGACTATCGCAATGCGAACTTGGACTATCGCAATGCGAATATGTAA
*
659915 ATTGCAATGCGATAGTCGA
1 ATCGCAATGCGATAGTCGA
659934 AGTTCGCATT
Statistics
Matches: 132, Mismatches: 11, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
62 79 0.60
63 53 0.40
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (62 bp):
ATCGCAATGCGATAGTCGACTATCGCAATGCGAACTTGGACTATCGCAATGCGAATATGTAA
Found at i:659941 original size:83 final size:83
Alignment explanation
Indices: 659724--659989 Score: 247
Period size: 83 Copynumber: 3.2 Consensus size: 83
659714 TGCGATTTTG
** * * * * * ** *
659724 GACTATCGCAATGCGATTTTGGACTATCGCAATGCGATTTTGGACTATCGCAATGCGATTTTGGA
1 GACTATCGCAATGCGAACTTGGACAATCGCAATGCGAATATGTA-AATCGCAATGCGATAGTCGA
659789 CTATCGCAATGCGATAGTC
65 CTATCGCAATGCGATAGTC
*
659808 GACTATCGCAATGCGAACTTGGACTATCGCAATGCGAATATGTAAATCGCAATGCGATAGTCGAC
1 GACTATCGCAATGCGAACTTGGACAATCGCAATGCGAATATGTAAATCGCAATGCGATAGTCGAC
*
659873 TATCGCAATGCGA-ACTTC
66 TATCGCAATGCGATA-GTC
* * * *
659891 GACTATCGCAATGCGAA-TATGTA-AATTGCAATGCG-ATA-GTCGAAGTTCGCATTGCGATAGT
1 GACTATCGCAATGCGAACT-TGGACAATCGCAATGCGAATATGT--AA-ATCGCAATGCGATAGT
* * *
659952 CCAAGT-TCGCATTGCGATAGTC
62 -CGACTATCGCAATGCGATAGTC
*
659974 GACTATCGCATTGCGA
1 GACTATCGCAATGCGA
659990 TTTACATATT
Statistics
Matches: 155, Mismatches: 20, Indels: 15
0.82 0.11 0.08
Matches are distributed among these distances:
80 2 0.01
81 3 0.02
82 14 0.09
83 93 0.60
84 43 0.28
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.27
Consensus pattern (83 bp):
GACTATCGCAATGCGAACTTGGACAATCGCAATGCGAATATGTAAATCGCAATGCGATAGTCGAC
TATCGCAATGCGATAGTC
Found at i:659948 original size:21 final size:21
Alignment explanation
Indices: 659922--660093 Score: 181
Period size: 21 Copynumber: 8.2 Consensus size: 21
659912 TAAATTGCAA
*
659922 TGCGATAGTCGAAGTTCGCAT
1 TGCGATAGTCCAAGTTCGCAT
659943 TGCGATAGTCCAAGTTCGCAT
1 TGCGATAGTCCAAGTTCGCAT
* *
659964 TGCGATAGT-CGACTATCGCAT
1 TGCGATAGTCCAAGT-TCGCAT
* * *
659985 TGCGAT-TTACATA-TTCGTAT
1 TGCGATAGTCCA-AGTTCGCAT
*
660005 TGCGATAGTCCAAGTTTGCAT
1 TGCGATAGTCCAAGTTCGCAT
*
660026 TGTGATAGTCCAAGTTCGCAT
1 TGCGATAGTCCAAGTTCGCAT
* *
660047 TGCGATAGT-CGACTATCGCAT
1 TGCGATAGTCCAAGT-TCGCAT
**
660068 TGCGATAGTCCAAAATCGCAT
1 TGCGATAGTCCAAGTTCGCAT
660089 TGCGA
1 TGCGA
660094 ATCTAGAAAC
Statistics
Matches: 126, Mismatches: 18, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
20 19 0.15
21 104 0.83
22 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (21 bp):
TGCGATAGTCCAAGTTCGCAT
Found at i:659968 original size:62 final size:62
Alignment explanation
Indices: 659791--660095 Score: 216
Period size: 62 Copynumber: 4.9 Consensus size: 62
659781 ATTTTGGACT
* * *** * *
659791 ATCGCAATGCGATAGTCGACTATCGCAATGCGA-ACTTGGACTATCGCAATGCGAATATGT-AA
1 ATCGCAATGCGATAGTCGACTATCGCATTGCGATAGTCCAAGT-TCGCATTGCGAATA-GTCAA
* * * * * *
659853 ATCGCAATGCGATAGTCGACTATCGCAATGCGA-ACTTCGACTATCGCAATGCGAATATGT-AA
1 ATCGCAATGCGATAGTCGACTATCGCATTGCGATAGTCCAAGT-TCGCATTGCGAATA-GTCAA
* * *
659915 ATTGCAATGCGATAGTCGAAGT-TCGCATTGCGATAGTCCAAGTTCGCATTGCG-ATAGTCGACT
1 ATCGCAATGCGATAGTCG-ACTATCGCATTGCGATAGTCCAAGTTCGCATTGCGAATAGTC-A-A
* * * * *
659978 ATCGCATTGCGAT--T-TACATATTCGTATTGCGATAGTCCAAGTTTGCATTGTG-ATAGTCCAA
1 ATCGCAATGCGATAGTCGAC-TA-TCGCATTGCGATAGTCCAAGTTCGCATTGCGAATAGT-CAA
* * **
660039 GTTCGCATTGCGATAGTCGACTATCGCATTGCGATAGTCCAAAATCGCATTGCGAAT
1 -ATCGCAATGCGATAGTCGACTATCGCATTGCGATAGTCCAAGTTCGCATTGCGAAT
660096 CTAGAAACTG
Statistics
Matches: 204, Mismatches: 25, Indels: 26
0.80 0.10 0.10
Matches are distributed among these distances:
59 1 0.00
60 3 0.01
61 4 0.02
62 144 0.71
63 45 0.22
64 5 0.02
65 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (62 bp):
ATCGCAATGCGATAGTCGACTATCGCATTGCGATAGTCCAAGTTCGCATTGCGAATAGTCAA
Found at i:659973 original size:42 final size:42
Alignment explanation
Indices: 659889--660093 Score: 199
Period size: 42 Copynumber: 4.9 Consensus size: 42
659879 AATGCGAACT
* * *
659889 TCGACTATCGCAATGCGAATATGT--AAATT-GCAATGCGATAG
1 TCGACTATCGCATTGCG-ATA-GTCCAAGTTCGCATTGCGATAG
*
659930 TCGAAGT-TCGCATTGCGATAGTCCAAGTTCGCATTGCGATAG
1 TCG-ACTATCGCATTGCGATAGTCCAAGTTCGCATTGCGATAG
* * *
659972 TCGACTATCGCATTGCGAT-TTACATA-TTCGTATTGCGATAG
1 TCGACTATCGCATTGCGATAGTCCA-AGTTCGCATTGCGATAG
* * * *
660013 TCCAAGT-TTGCATTGTGATAGTCCAAGTTCGCATTGCGATAG
1 T-CGACTATCGCATTGCGATAGTCCAAGTTCGCATTGCGATAG
**
660055 TCGACTATCGCATTGCGATAGTCCAAAATCGCATTGCGA
1 TCGACTATCGCATTGCGATAGTCCAAGTTCGCATTGCGA
660094 ATCTAGAAAC
Statistics
Matches: 133, Mismatches: 21, Indels: 19
0.77 0.12 0.11
Matches are distributed among these distances:
39 2 0.02
40 3 0.02
41 50 0.38
42 78 0.59
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.30
Consensus pattern (42 bp):
TCGACTATCGCATTGCGATAGTCCAAGTTCGCATTGCGATAG
Found at i:660115 original size:104 final size:104
Alignment explanation
Indices: 659916--660104 Score: 245
Period size: 104 Copynumber: 1.8 Consensus size: 104
659906 AATATGTAAA
* * * **
659916 TTGCAATGCGATAGTCGAAGTTCGCATTGCGATAGTCCAAGTTCGCATTGCGATAGTCGACTATC
1 TTGCAATGCGATAGTCCAAGTTCGCATTGCGATAGTCCAACTTCGCATTGCGATAGTCCAAAATC
* * *
659981 GCATTGCGATTTACATATTCGTATTGCGATAGTCCAAGT
66 GCATTGCGATCTACAAACTCGTATTGCGATAGTCCAAGT
* * *
660020 TTGCATTGTGATAGTCCAAGTTCGCATTGCGATAGT-CGACTATCGCATTGCGATAGTCCAAAAT
1 TTGCAATGCGATAGTCCAAGTTCGCATTGCGATAGTCCAACT-TCGCATTGCGATAGTCCAAAAT
*
660084 CGCATTGCGAATCTAGAAACT
65 CGCATTGCG-ATCTACAAACT
660105 GATTTGCGAT
Statistics
Matches: 71, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
103 3 0.04
104 61 0.86
105 7 0.10
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (104 bp):
TTGCAATGCGATAGTCCAAGTTCGCATTGCGATAGTCCAACTTCGCATTGCGATAGTCCAAAATC
GCATTGCGATCTACAAACTCGTATTGCGATAGTCCAAGT
Found at i:665619 original size:48 final size:49
Alignment explanation
Indices: 665554--665688 Score: 166
Period size: 48 Copynumber: 2.7 Consensus size: 49
665544 CATTTGACAA
* *
665554 ATACTTACACCGGTGTAAGTGAATAAAATAAACAAA-TAGCACTTAACAC
1 ATACTTACA-CGATGTAAGTGAATAAAATAAAAAAAGTAGCACTTAACAC
* *
665603 ATA-TTACATCGATGTAAGTGAATAAAATAAGAAAAATGTAGCACTTAATAT
1 ATACTTACA-CGATGTAAGTGAATAAAATAA-AAAAA-GTAGCACTTAACAC
*
665654 ATACTTACACTGATGTAAGTAAATAAAATAAAAAA
1 ATACTTACAC-GATGTAAGTGAATAAAATAAAAAA
665689 GTGTAACACT
Statistics
Matches: 75, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
48 25 0.33
49 7 0.09
51 19 0.25
52 24 0.32
ACGTcount: A:0.50, C:0.12, G:0.12, T:0.26
Consensus pattern (49 bp):
ATACTTACACGATGTAAGTGAATAAAATAAAAAAAGTAGCACTTAACAC
Found at i:665679 original size:52 final size:51
Alignment explanation
Indices: 665533--665698 Score: 178
Period size: 51 Copynumber: 3.3 Consensus size: 51
665523 TTTATACTAC
* * * * * *
665533 AAAAAATGTAACATTTGACAAATACTTACACCGGTGTAAGTGAATAAAATA
1 AAAAAATGTAGCACTTAACACATACTTACACTGATGTAAGTGAATAAAATA
*
665584 AACAAA--TAGCACTTAACACATA-TTACA-TCGATGTAAGTGAATAAAATA
1 AAAAAATGTAGCACTTAACACATACTTACACT-GATGTAAGTGAATAAAATA
* * *
665632 AGAAAAATGTAGCACTTAATATATACTTACACTGATGTAAGTAAATAAAATA
1 A-AAAAATGTAGCACTTAACACATACTTACACTGATGTAAGTGAATAAAATA
* *
665684 AAAAAGTGTAACACT
1 AAAAAATGTAGCACT
665699 GGTGTAAATA
Statistics
Matches: 96, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
48 24 0.25
49 16 0.17
51 31 0.32
52 24 0.25
53 1 0.01
ACGTcount: A:0.50, C:0.12, G:0.12, T:0.26
Consensus pattern (51 bp):
AAAAAATGTAGCACTTAACACATACTTACACTGATGTAAGTGAATAAAATA
Found at i:666975 original size:2 final size:2
Alignment explanation
Indices: 666968--666993 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
666958 CCGTAAGTTA
666968 TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC
666994 CCGTTTCTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:673045 original size:64 final size:65
Alignment explanation
Indices: 672977--673121 Score: 170
Period size: 64 Copynumber: 2.2 Consensus size: 65
672967 TTGGACCATT
* * * *
672977 AGTGCATCGGTGCACT-AAGAGTGCATCGATGCATGAAGTGCATTCGATG-TTTCAAAATAG-CT
1 AGTGCATCGATGCA-TGAAGAGTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAA-AGCCC
673039 TG
64 TG
**** *
673041 AGTGCATCGATGCATGTCTTGTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAAGCCCTG
1 AGTGCATCGATGCATGAAGAGTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAAAGCCCTG
673106 AGTGCATCGATGCATG
1 AGTGCATCGATGCATG
673122 GATTGGTGCA
Statistics
Matches: 69, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
63 1 0.01
64 42 0.61
65 26 0.38
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (65 bp):
AGTGCATCGATGCATGAAGAGTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAAAGCCCTG
Found at i:678245 original size:19 final size:19
Alignment explanation
Indices: 678203--678249 Score: 55
Period size: 18 Copynumber: 2.5 Consensus size: 19
678193 TCCTTGACTA
678203 ATTTTTATTTGTTATTGTT
1 ATTTTTATTTGTTATTGTT
678222 A-TTTTAGTTT-TT-TTGTAT
1 ATTTTTA-TTTGTTATTGT-T
678240 ATTTTTATTT
1 ATTTTTATTT
678250 ATTTATTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
17 4 0.16
18 12 0.48
19 9 0.36
ACGTcount: A:0.17, C:0.00, G:0.09, T:0.74
Consensus pattern (19 bp):
ATTTTTATTTGTTATTGTT
Found at i:678258 original size:23 final size:24
Alignment explanation
Indices: 678206--678258 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 24
678196 TTGACTAATT
678206 TTTA-TTTGTTATTGTTATTTTAG
1 TTTATTTTGTTATTGTTATTTTAG
*
678229 TTT-TTTTGTATATTTTTA-TTTA-
1 TTTATTTTGT-TATTGTTATTTTAG
678251 TTTATTTT
1 TTTATTTT
678259 TGAAAAATCA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
22 3 0.12
23 16 0.62
24 7 0.27
ACGTcount: A:0.17, C:0.00, G:0.08, T:0.75
Consensus pattern (24 bp):
TTTATTTTGTTATTGTTATTTTAG
Found at i:681084 original size:13 final size:13
Alignment explanation
Indices: 681066--681090 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
681056 ACCAAAGCTG
681066 ATTTTTCTGCACT
1 ATTTTTCTGCACT
681079 ATTTTTCTGCAC
1 ATTTTTCTGCAC
681091 AGTTTGAATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.24, G:0.08, T:0.52
Consensus pattern (13 bp):
ATTTTTCTGCACT
Found at i:685944 original size:18 final size:20
Alignment explanation
Indices: 685902--685944 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
685892 TTGACCTAAG
*
685902 GCATGATTCTTCATTAAAAA
1 GCATGAATCTTCATTAAAAA
685922 GCATGAATCTTCA-TAAAAA
1 GCATGAATCTTCATTAAAAA
685941 -CATG
1 GCATG
685945 TTTTTCAAGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 4 0.18
19 6 0.27
20 12 0.55
ACGTcount: A:0.42, C:0.16, G:0.12, T:0.30
Consensus pattern (20 bp):
GCATGAATCTTCATTAAAAA
Found at i:706502 original size:25 final size:25
Alignment explanation
Indices: 706474--706527 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
706464 TGTGATATAT
706474 ACAATTAAACTTGTTTCTAAAACCA
1 ACAATTAAACTTGTTTCTAAAACCA
706499 ACAATTAAACTTGTTTCTAAAACCA
1 ACAATTAAACTTGTTTCTAAAACCA
706524 ACAA
1 ACAA
706528 GTAGAAGATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.46, C:0.20, G:0.04, T:0.30
Consensus pattern (25 bp):
ACAATTAAACTTGTTTCTAAAACCA
Found at i:707535 original size:23 final size:23
Alignment explanation
Indices: 707491--707576 Score: 92
Period size: 23 Copynumber: 3.9 Consensus size: 23
707481 CTCAAGACTC
*
707491 GAGCTCGATT-GAGACTCGATTTT
1 GAGCTCGATTCAAG-CTCGATTTT
*
707514 GAGCTCGATTCAAGCTCAATTTT
1 GAGCTCGATTCAAGCTCGATTTT
707537 GA----GATTCAAGCTCGATTTT
1 GAGCTCGATTCAAGCTCGATTTT
* *
707556 GAGCTAGATTCAAGCTTGATT
1 GAGCTCGATTCAAGCTCGATT
707577 CAAGCTCGAA
Statistics
Matches: 54, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
19 18 0.33
23 34 0.63
24 2 0.04
ACGTcount: A:0.26, C:0.17, G:0.22, T:0.35
Consensus pattern (23 bp):
GAGCTCGATTCAAGCTCGATTTT
Found at i:707544 original size:19 final size:19
Alignment explanation
Indices: 707520--707558 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
707510 TTTTGAGCTC
707520 GATTCAAGCTCAATTTTGA
1 GATTCAAGCTCAATTTTGA
*
707539 GATTCAAGCTCGATTTTGA
1 GATTCAAGCTCAATTTTGA
707558 G
1 G
707559 CTAGATTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36
Consensus pattern (19 bp):
GATTCAAGCTCAATTTTGA
Found at i:707737 original size:10 final size:10
Alignment explanation
Indices: 707722--707746 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
707712 AAGTTTCTGG
707722 AACAATGGCT
1 AACAATGGCT
707732 AACAATGGCT
1 AACAATGGCT
707742 AACAA
1 AACAA
707747 CTTTTGAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.20, G:0.16, T:0.16
Consensus pattern (10 bp):
AACAATGGCT
Found at i:709353 original size:11 final size:11
Alignment explanation
Indices: 709337--709399 Score: 51
Period size: 11 Copynumber: 5.9 Consensus size: 11
709327 GTATTATAGA
709337 ATTTTTAATAT
1 ATTTTTAATAT
709348 ATTTTTAA-A-
1 ATTTTTAATAT
709357 ATTTTATAAT-T
1 ATTTT-TAATAT
*** * *
709368 ATCAATAGTGT
1 ATTTTTAATAT
709379 ATTTTTAATAT
1 ATTTTTAATAT
709390 ATTTTTAATA
1 ATTTTTAATA
709400 ATGTAATTTT
Statistics
Matches: 39, Mismatches: 9, Indels: 8
0.70 0.16 0.14
Matches are distributed among these distances:
9 5 0.13
10 7 0.18
11 27 0.69
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.57
Consensus pattern (11 bp):
ATTTTTAATAT
Found at i:709558 original size:23 final size:23
Alignment explanation
Indices: 709526--709584 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 23
709516 GACTCGAGTC
709526 CATTCGATTCGAGTATTTATCAAG
1 CATT-GATTCGAGTATTTATCAAG
*
709550 CATTGATTCGAGTATTTATCGAG
1 CATTGATTCGAGTATTTATCAAG
*
709573 CCTTGATT-GAGT
1 CATTGATTCGAGT
709585 CGATCTCAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
22 4 0.12
23 25 0.76
24 4 0.12
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.39
Consensus pattern (23 bp):
CATTGATTCGAGTATTTATCAAG
Found at i:710292 original size:17 final size:18
Alignment explanation
Indices: 710258--710291 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
710248 TGTGCACTCG
710258 ATATTTATAATTAATTTT
1 ATATTTATAATTAATTTT
710276 ATATTT-TAATT-ATTTT
1 ATATTTATAATTAATTTT
710292 TCATAGTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 5 0.31
18 6 0.38
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
ATATTTATAATTAATTTT
Found at i:713479 original size:20 final size:21
Alignment explanation
Indices: 713440--713484 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
713430 AATTCACGTT
* *
713440 GCGATTTTCCAAATTTGCAAC
1 GCGATTTTCCAAAATCGCAAC
713461 GCGATTTT-CAAAATCGCAAC
1 GCGATTTTCCAAAATCGCAAC
713481 GCGA
1 GCGA
713485 ATCTATAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (21 bp):
GCGATTTTCCAAAATCGCAAC
Found at i:713699 original size:22 final size:22
Alignment explanation
Indices: 713674--713731 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
713664 CTACGGTGAC
713674 ATCCGTCCCTATCTCCGACAAA
1 ATCCGTCCCTATCTCCGACAAA
* * *
713696 ATCCATCCCCATCTCCGGCAAA
1 ATCCGTCCCTATCTCCGACAAA
*
713718 ATTCGT--CTATCTCC
1 ATCCGTCCCTATCTCC
713732 ATCTCTCATA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
20 7 0.23
22 23 0.77
ACGTcount: A:0.24, C:0.41, G:0.09, T:0.26
Consensus pattern (22 bp):
ATCCGTCCCTATCTCCGACAAA
Found at i:713932 original size:14 final size:14
Alignment explanation
Indices: 713913--713946 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
713903 CATGATTTTC
*
713913 ATTTTCGTGTTGCG
1 ATTTTCGCGTTGCG
713927 ATTTTCGCGTTGCG
1 ATTTTCGCGTTGCG
713941 ATTTTC
1 ATTTTC
713947 ATTTCGCGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.09, C:0.18, G:0.24, T:0.50
Consensus pattern (14 bp):
ATTTTCGCGTTGCG
Found at i:716143 original size:21 final size:21
Alignment explanation
Indices: 716031--716149 Score: 139
Period size: 21 Copynumber: 5.7 Consensus size: 21
716021 GAAGCACCTG
*
716031 CCATCTTTCAAGAGGCCTCTC
1 CCATCGTTCAAGAGGCCTCTC
*
716052 CTATCGTTCAAGAGGCCTCTC
1 CCATCGTTCAAGAGGCCTCTC
* *
716073 CTATCGTTCAAGAGGCCCCTC
1 CCATCGTTCAAGAGGCCTCTC
* * *
716094 CCACCATTCAAGAGGCCTCTG
1 CCATCGTTCAAGAGGCCTCTC
* *
716115 TCATCGTTCAAGAGGTCTCTC
1 CCATCGTTCAAGAGGCCTCTC
* *
716136 CCACCGTTCGAGAG
1 CCATCGTTCAAGAG
716150 CCCAATTCAC
Statistics
Matches: 82, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 82 1.00
ACGTcount: A:0.20, C:0.35, G:0.19, T:0.25
Consensus pattern (21 bp):
CCATCGTTCAAGAGGCCTCTC
Found at i:717520 original size:13 final size:14
Alignment explanation
Indices: 717491--717523 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
717481 AAATTGATGT
717491 ATTTGTAAAAGTTG
1 ATTTGTAAAAGTTG
*
717505 ATTTGT-AAATTTG
1 ATTTGTAAAAGTTG
717518 ATTTGT
1 ATTTGT
717524 TTAATTGATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.30, C:0.00, G:0.18, T:0.52
Consensus pattern (14 bp):
ATTTGTAAAAGTTG
Found at i:717586 original size:64 final size:63
Alignment explanation
Indices: 717502--717637 Score: 182
Period size: 64 Copynumber: 2.1 Consensus size: 63
717492 TTTGTAAAAG
* *
717502 TTGATTTGTAAATTTGATTTGTTTAATTGATGAGGAAATAAGAAATATTTTTTGCTTGTTTAA
1 TTGATTTGTAAAGTTGATTTGTTTAATTGATGAGGAAATAAGAAATAGTTTTTGCTTGTTTAA
* * * ****
717565 TTTATTTGTAAAAGTTGATTTGTTTAATTGATGTGTAAATAATTCTTAGTTTTTGCTTGTTTAA
1 TTGATTTGT-AAAGTTGATTTGTTTAATTGATGAGGAAATAAGAAATAGTTTTTGCTTGTTTAA
717629 TTGATTTGT
1 TTGATTTGT
717638 TATTTTAAAT
Statistics
Matches: 62, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
63 8 0.13
64 54 0.87
ACGTcount: A:0.28, C:0.02, G:0.17, T:0.53
Consensus pattern (63 bp):
TTGATTTGTAAAGTTGATTTGTTTAATTGATGAGGAAATAAGAAATAGTTTTTGCTTGTTTAA
Found at i:717749 original size:20 final size:20
Alignment explanation
Indices: 717705--717749 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
717695 CTTTCGCAAC
*
717705 GCGAAAGTCAAATTCGCGTT
1 GCGATAGTCAAATTCGCGTT
717725 GCGATAGTCAAATTCGCGTT
1 GCGATAGTCAAATTCGCGTT
717745 GCGAT
1 GCGAT
717750 TTCGCATTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (20 bp):
GCGATAGTCAAATTCGCGTT
Found at i:719182 original size:18 final size:18
Alignment explanation
Indices: 719159--719195 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
719149 CAAAATTTAT
719159 ATTGAAATTCAAACTCAA
1 ATTGAAATTCAAACTCAA
* *
719177 ATTGAAATTTAAATTCAA
1 ATTGAAATTCAAACTCAA
719195 A
1 A
719196 CTCCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATTGAAATTCAAACTCAA
Found at i:719609 original size:25 final size:25
Alignment explanation
Indices: 719581--719630 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
719571 CATTATTTTC
*
719581 CAAATAATGTACCCATAACAATGTT
1 CAAATAATGTACCCACAACAATGTT
719606 CAAATAATGTACCCACAACAATGTT
1 CAAATAATGTACCCACAACAATGTT
719631 TAATTGATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.44, C:0.22, G:0.08, T:0.26
Consensus pattern (25 bp):
CAAATAATGTACCCACAACAATGTT
Found at i:720684 original size:21 final size:21
Alignment explanation
Indices: 720641--720685 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
720631 GATTTCTGGG
* * *
720641 CAAGGGGAATCGGTATCCATT
1 CAAGGGGAACCGATACCCATT
*
720662 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
720683 CAA
1 CAA
720686 ACGACAAATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.27, G:0.24, T:0.18
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:721282 original size:18 final size:18
Alignment explanation
Indices: 721259--721293 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
721249 CTAGGAGATT
721259 TGAACATA-AATGATAAGA
1 TGAACATATAA-GATAAGA
721277 TGAACATATAAGATAAG
1 TGAACATATAAGATAAG
721294 CTAGATGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.54, C:0.06, G:0.17, T:0.23
Consensus pattern (18 bp):
TGAACATATAAGATAAGA
Found at i:722596 original size:148 final size:149
Alignment explanation
Indices: 722297--722599 Score: 554
Period size: 148 Copynumber: 2.0 Consensus size: 149
722287 GATTCGAGGG
722297 TCTACGCGGTTCTTCGAGACATATGTATATTCTTTGGAACATGTGTGAAGTCTAGAAAGACACAT
1 TCTACGCGGTTCTTCGAGACATATGTATATTCTTTGGAACATGTGTGAAGTCTAGAAAGACACAT
* *
722362 ACTTGATCCCTAACATATGTATATGATTCTTAAAGAATTCTATGTGGTCCTTATGGACATTATTA
66 ACTTGATCCCTAACATATGTATATGATTCTTAAAGAATTCTACGTGGTCCTTATGGACATCATTA
722427 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
* *
722446 TCTACGCGGTTCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTGGAAAGACACAT
1 TCTACGCGGTTCTTCGAGACATATGTATATTCTTTGGAACATGTGTGAAGTCTAGAAAGACACAT
*
722511 ACTTGAT-CCTAGCATATGTATATGATTCTTAAAGAATTCTACGTGGTCCTTATGGACATCATTA
66 ACTTGATCCCTAACATATGTATATGATTCTTAAAGAATTCTACGTGGTCCTTATGGACATCATTA
722575 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
722594 TCTACG
1 TCTACG
722600 GGGCACTTCG
Statistics
Matches: 149, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
148 79 0.53
149 70 0.47
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.34
Consensus pattern (149 bp):
TCTACGCGGTTCTTCGAGACATATGTATATTCTTTGGAACATGTGTGAAGTCTAGAAAGACACAT
ACTTGATCCCTAACATATGTATATGATTCTTAAAGAATTCTACGTGGTCCTTATGGACATCATTA
TATGGCACTACGGTGCAAT
Found at i:722622 original size:23 final size:23
Alignment explanation
Indices: 722578--722622 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
722568 ATCATTATAT
*
722578 GGCACTACGGTGCAATTCTACGG
1 GGCACTACGGTGCAATTATACGG
* *
722601 GGCACTTCGGTGCATTTATACG
1 GGCACTACGGTGCAATTATACG
722623 AGCTGTGGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.27
Consensus pattern (23 bp):
GGCACTACGGTGCAATTATACGG
Found at i:726412 original size:18 final size:18
Alignment explanation
Indices: 726389--726423 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
726379 CTAGGAGATT
726389 TGAACATA-AATGATAAGA
1 TGAACATATAA-GATAAGA
726407 TGAACATATAAGATAAG
1 TGAACATATAAGATAAG
726424 CTAGATGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.54, C:0.06, G:0.17, T:0.23
Consensus pattern (18 bp):
TGAACATATAAGATAAGA
Found at i:727684 original size:149 final size:149
Alignment explanation
Indices: 727414--727717 Score: 554
Period size: 149 Copynumber: 2.0 Consensus size: 149
727404 GAGTCGAGGG
* *
727414 TCTACGCGGTTCTTCGAGACATATGTATATTGTTTGGAACATGTGTGAAGTCTAGAAAGACACAT
1 TCTACGCGGTTCTTCGAGACATATGTATATTCTTTGGAACATGTGTGAAGTCTAGAAAGAAACAT
* *
727479 ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTATGTGGTCCTTATGGACATTATTA
66 ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTACGTGGTCCTTATGGACATCATTA
727544 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
* *
727563 TCTACGCGGTTCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTGGAAAGAAACAT
1 TCTACGCGGTTCTTCGAGACATATGTATATTCTTTGGAACATGTGTGAAGTCTAGAAAGAAACAT
727628 ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTACGTGGTCCTTATGGACATCATTA
66 ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTACGTGGTCCTTATGGACATCATTA
727693 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
727712 TCTACG
1 TCTACG
727718 GGGCACTTCG
Statistics
Matches: 149, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
149 149 1.00
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.34
Consensus pattern (149 bp):
TCTACGCGGTTCTTCGAGACATATGTATATTCTTTGGAACATGTGTGAAGTCTAGAAAGAAACAT
ACTTGATCCCTAGCATATGTATATGATTCTTAAAGAATTCTACGTGGTCCTTATGGACATCATTA
TATGGCACTACGGTGCAAT
Found at i:727740 original size:23 final size:23
Alignment explanation
Indices: 727696--727740 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
727686 ATCATTATAT
*
727696 GGCACTACGGTGCAATTCTACGG
1 GGCACTACGGTGCAATTATACGG
* *
727719 GGCACTTCGGTGCATTTATACG
1 GGCACTACGGTGCAATTATACG
727741 AGCTGTGGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.27
Consensus pattern (23 bp):
GGCACTACGGTGCAATTATACGG
Found at i:728524 original size:18 final size:18
Alignment explanation
Indices: 728501--728536 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
728491 AAGCCGGTTG
728501 TGATTGAGATTTTGATTT
1 TGATTGAGATTTTGATTT
*
728519 TGATTGCGATTTTGATTT
1 TGATTGAGATTTTGATTT
728537 CCTTTTGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.19, C:0.03, G:0.22, T:0.56
Consensus pattern (18 bp):
TGATTGAGATTTTGATTT
Found at i:730838 original size:24 final size:24
Alignment explanation
Indices: 730800--730853 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
730790 CTGAAACATC
*
730800 ATCAAAATCCTAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
*
730824 ATCAAAGTCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
730848 ATCAAA
1 ATCAAA
730854 TTTTGAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.43, C:0.20, G:0.15, T:0.22
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:730867 original size:24 final size:24
Alignment explanation
Indices: 730816--730867 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
730806 ATCCTAGTAT
* *
730816 TGACCAAGATCAAAGTCCGAGTAT
1 TGACCAAGATCAAAGTCCGAATAC
* **
730840 TGACCAAGATCAAATTTTGAATAC
1 TGACCAAGATCAAAGTCCGAATAC
730864 TGAC
1 TGAC
730868 TAGTACTCAC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.25
Consensus pattern (24 bp):
TGACCAAGATCAAAGTCCGAATAC
Found at i:731001 original size:12 final size:12
Alignment explanation
Indices: 730980--731013 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
730970 GGTTGTGGGT
*
730980 TTTGAGATTGTG
1 TTTGATATTGTG
730992 TTTGATATTGTG
1 TTTGATATTGTG
*
731004 TTTGGTATTG
1 TTTGATATTG
731014 GAAATGTGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.29, T:0.56
Consensus pattern (12 bp):
TTTGATATTGTG
Found at i:731868 original size:21 final size:20
Alignment explanation
Indices: 731802--731959 Score: 101
Period size: 20 Copynumber: 7.8 Consensus size: 20
731792 AAATAAAACC
* *
731802 TGTTGCGAAATTAAAATTCG
1 TGTTGCGAATTTGAAATTCG
* *
731822 TGTTGTGAATTCGGAAA-TCG
1 TGTTGCGAATT-TGAAATTCG
*
731842 AGTTGCGAATTTGAAATTCAG
1 TGTTGCGAATTTGAAATTC-G
731863 TGTTGCGAATTTGTAAA-TCG
1 TGTTGCGAATTTG-AAATTCG
** *
731883 CATTGCGAATTT-ACAAATCG
1 TGTTGCGAATTTGA-AATTCG
* ** *
731903 CGTTGCGAATTTGACTTTTG
1 TGTTGCGAATTTGAAATTCG
731923 TGTTGCG-ATTT-ATAGATTCG
1 TGTTGCGAATTTGA-A-ATTCG
*
731943 CGTTGCGAATTTAGAAA
1 TGTTGCGAATTT-GAAA
731960 ATCGCAACGC
Statistics
Matches: 106, Mismatches: 20, Indels: 23
0.71 0.13 0.15
Matches are distributed among these distances:
18 2 0.02
19 10 0.09
20 65 0.61
21 24 0.23
22 4 0.04
23 1 0.01
ACGTcount: A:0.28, C:0.12, G:0.23, T:0.37
Consensus pattern (20 bp):
TGTTGCGAATTTGAAATTCG
Found at i:731881 original size:41 final size:40
Alignment explanation
Indices: 731803--731915 Score: 122
Period size: 41 Copynumber: 2.8 Consensus size: 40
731793 AATAAAACCT
* * *
731803 GTTGCGAAATTAAAATTCGTGTTGTGAATTCGGAAATCG-A
1 GTTGCG-AATTTAAATTCGTGTTGCGAATTTGGAAATCGCA
*
731843 GTTGCGAATTTGAAATTCAGTGTTGCGAATTTGTAAATCGCA
1 GTTGCGAATTT-AAATTC-GTGTTGCGAATTTGGAAATCGCA
* *
731885 -TTGCGAATTTACAAATCGCGTTGCGAATTTG
1 GTTGCGAATTTA-AATTCGTGTTGCGAATTTG
731916 ACTTTTGTGT
Statistics
Matches: 63, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
39 4 0.06
40 26 0.41
41 32 0.51
42 1 0.02
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.35
Consensus pattern (40 bp):
GTTGCGAATTTAAATTCGTGTTGCGAATTTGGAAATCGCA
Found at i:731954 original size:60 final size:62
Alignment explanation
Indices: 731836--731964 Score: 156
Period size: 60 Copynumber: 2.1 Consensus size: 62
731826 GTGAATTCGG
* * *
731836 AAATCGAGTTGCGAATTTGAAATTCAGTGTTGCGAATTTGTAAATCGCATTGCGAATTTA-C
1 AAATCGCGTTGCGAATTTGAAATTCAGTGTTGCGAATTTATAAATCGCATTGCGAATTTAGA
* ** * *
731897 AAATCGCGTTGCGAATTTG-ACTTTTGTGTTGCG-ATTTATAGATTCGCGTTGCGAATTTAGA
1 AAATCGCGTTGCGAATTTGAAATTCAGTGTTGCGAATTTATA-AATCGCATTGCGAATTTAGA
731958 AAATCGC
1 AAATCGC
731965 AACGCGAATT
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
59 6 0.10
60 27 0.47
61 25 0.43
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.36
Consensus pattern (62 bp):
AAATCGCGTTGCGAATTTGAAATTCAGTGTTGCGAATTTATAAATCGCATTGCGAATTTAGA
Found at i:732030 original size:102 final size:101
Alignment explanation
Indices: 731867--732056 Score: 228
Period size: 102 Copynumber: 1.9 Consensus size: 101
731857 ATTCAGTGTT
* *** *
731867 GCGAATTTGTAAATCGCATTGCGAATTTACAAATCGCGTTGCGAATTTGACTTTTGTGTTGCG--
1 GCGAATTCGTAAATCGCATTGCGAATTTACAAATCGCGTTGCGAATTTGACAACTGAGTTGCGAA
*
731930 ATTTATAGATTCGCGTTGCGAATTTAGAAAATCGCAAC
66 ATTT-GAG-TTCGCGTTGCGAATTTAGAAAATCGCAAC
*
731968 GCGAATTCGTAAAATCGC-TATGCG-ATTTACATATTCGCGTTGCGAATTTGGA-AACTGAGTTG
1 GCGAATTCGT-AAATCGCAT-TGCGAATTTACA-AATCGCGTTGCGAATTT-GACAACTGAGTTG
732030 CGAAATTTGAGTTCGCGTTGCGAATTT
62 CGAAATTTGAGTTCGCGTTGCGAATTT
732057 GTTGGTCATT
Statistics
Matches: 76, Mismatches: 7, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
101 17 0.22
102 51 0.67
103 4 0.05
104 4 0.05
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (101 bp):
GCGAATTCGTAAATCGCATTGCGAATTTACAAATCGCGTTGCGAATTTGACAACTGAGTTGCGAA
ATTTGAGTTCGCGTTGCGAATTTAGAAAATCGCAAC
Found at i:747962 original size:16 final size:14
Alignment explanation
Indices: 747941--747979 Score: 51
Period size: 16 Copynumber: 2.6 Consensus size: 14
747931 TTTTTTATTA
747941 TTTTATTAATTAATAT
1 TTTTATTAA-TAA-AT
747957 TTTTATTCAATAAAT
1 TTTTATT-AATAAAT
747972 TTTTATTA
1 TTTTATTA
747980 TTTTTGTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 1 0.05
15 9 0.41
16 10 0.45
17 2 0.09
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (14 bp):
TTTTATTAATAAAT
Found at i:747981 original size:24 final size:24
Alignment explanation
Indices: 747954--747999 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
747944 TATTAATTAA
747954 TATTTTTATTCAATAAATTTTTAT
1 TATTTTTATTCAATAAATTTTTAT
* * *
747978 TATTTTTGTTTAATTAATTTTT
1 TATTTTTATTCAATAAATTTTT
748000 GTATTCAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.67
Consensus pattern (24 bp):
TATTTTTATTCAATAAATTTTTAT
Found at i:747997 original size:15 final size:16
Alignment explanation
Indices: 747979--748015 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
747969 AATTTTTATT
747979 ATTTTTGT-TT-AATTA
1 ATTTTTGTATTCAA-TA
747994 ATTTTTGTATTCAATA
1 ATTTTTGTATTCAATA
748010 ATTTTT
1 ATTTTT
748016 TATGTATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 8 0.40
16 10 0.50
17 2 0.10
ACGTcount: A:0.27, C:0.03, G:0.05, T:0.65
Consensus pattern (16 bp):
ATTTTTGTATTCAATA
Found at i:748005 original size:41 final size:40
Alignment explanation
Indices: 747932--748028 Score: 126
Period size: 41 Copynumber: 2.4 Consensus size: 40
747922 CCTTCCCCAT
747932 TTTTTATTA-TTTTATTAATTAATATTTTTATTCAATAAA
1 TTTTTATTATTTTTATTAATTAATATTTTTATTCAATAAA
* *
747971 TTTTTATTATTTTTGTTTAATTAAT-TTTTGTATTCAATAAT
1 TTTTTATTATTTTT-ATTAATTAATATTTT-TATTCAATAAA
748012 TTTTTATGTATTATTTA
1 TTTTTAT-TATT-TTTA
748029 ATTATAAATT
Statistics
Matches: 50, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
39 9 0.18
40 8 0.16
41 26 0.52
42 4 0.08
43 3 0.06
ACGTcount: A:0.30, C:0.02, G:0.03, T:0.65
Consensus pattern (40 bp):
TTTTTATTATTTTTATTAATTAATATTTTTATTCAATAAA
Found at i:756865 original size:43 final size:43
Alignment explanation
Indices: 756800--756908 Score: 139
Period size: 43 Copynumber: 2.5 Consensus size: 43
756790 TTAATTAACG
* * *
756800 ATAAAAAAATAAT-TTTAAATAACGTCTAATATTAATATTTTA
1 ATAAAAAAATAATATTTAAATAACATCCAATATTAATATTATA
* *
756842 ATAAAAAAATAATATTTAGATAACATCCCATATTAATATTATA
1 ATAAAAAAATAATATTTAAATAACATCCAATATTAATATTATA
* *
756885 GTAAAATAAATAATATTTTAATAA
1 ATAAAA-AAATAATATTTAAATAA
756909 TATTTTACTA
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 13 0.23
43 29 0.51
44 15 0.26
ACGTcount: A:0.54, C:0.06, G:0.03, T:0.38
Consensus pattern (43 bp):
ATAAAAAAATAATATTTAAATAACATCCAATATTAATATTATA
Found at i:756909 original size:11 final size:11
Alignment explanation
Indices: 756893--756934 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
756883 TAGTAAAATA
756893 AATAATATTTT
1 AATAATATTTT
756904 AATAATATTTT
1 AATAATATTTT
* *
756915 ACTAAAATTATT
1 AATAATATT-TT
756927 AATAATAT
1 AATAATAT
756935 AACAACATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
11 18 0.69
12 8 0.31
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (11 bp):
AATAATATTTT
Found at i:757826 original size:111 final size:111
Alignment explanation
Indices: 757631--757844 Score: 383
Period size: 111 Copynumber: 1.9 Consensus size: 111
757621 ATATATTTCT
* * *
757631 ACACTTTGTTGATACAGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAATATTTAGT
1 ACACTTTGCTGATACAGTAACATTTTAACATTTTAATTTAATTTAAATTATTAGTAATAATTAGT
*
757696 TGATTTATTTAATGTATGATTATTAGATTAAGAATTAAATATATCG
66 TGATTTATTTAATGCATGATTATTAGATTAAGAATTAAATATATCG
*
757742 ACACTTTGCTGATACGGTAACATTTTAACATTTTAATTTAATTTAAATTATTAGTAATAATTAGT
1 ACACTTTGCTGATACAGTAACATTTTAACATTTTAATTTAATTTAAATTATTAGTAATAATTAGT
757807 TGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
66 TGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
757845 TTTTTGTAAT
Statistics
Matches: 98, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
111 98 1.00
ACGTcount: A:0.37, C:0.06, G:0.11, T:0.46
Consensus pattern (111 bp):
ACACTTTGCTGATACAGTAACATTTTAACATTTTAATTTAATTTAAATTATTAGTAATAATTAGT
TGATTTATTTAATGCATGATTATTAGATTAAGAATTAAATATATCG
Found at i:759663 original size:3 final size:3
Alignment explanation
Indices: 759649--759681 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
759639 ACCTGCTCAG
*
759649 GAC GAT GAC GAC GAC GAC GAC GAC GAC GAC GAC
1 GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC
759682 AGCGAGGAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.33, C:0.30, G:0.33, T:0.03
Consensus pattern (3 bp):
GAC
Found at i:759933 original size:35 final size:33
Alignment explanation
Indices: 759894--759978 Score: 91
Period size: 35 Copynumber: 2.5 Consensus size: 33
759884 ATATTTCAGT
759894 TAATTTTGTT-TATTACCATTTAATATCAGTTATTG
1 TAATTTTGTTATATTACCATTTAAT-TC--TTATTG
*
759929 TAATTTGGTTATCATTTACCATTTAATTCTTATTG
1 TAATTTTGTTAT-A-TTACCATTTAATTCTTATTG
* *
759964 TAAGTTTGTTGTATT
1 TAATTTTGTTATATT
759979 TAAATACCAA
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
33 2 0.05
34 1 0.02
35 24 0.56
36 1 0.02
37 3 0.07
38 12 0.28
ACGTcount: A:0.26, C:0.08, G:0.11, T:0.55
Consensus pattern (33 bp):
TAATTTTGTTATATTACCATTTAATTCTTATTG
Found at i:763677 original size:51 final size:50
Alignment explanation
Indices: 763571--763690 Score: 127
Period size: 51 Copynumber: 2.4 Consensus size: 50
763561 CTACGTGGCG
* * * *
763571 TATAGCGCGG-AGCAGGAGGCGCACTATACCCCACGTGTAACCCAGTCAGCG
1 TATAGCGCGGTA-CAGGGGGCGCACTATACCCCACGTG-AACCCAATCAACA
*
763622 TATAGCGCGGTACAGGGGGCGCACTATACTCCACGTG-ACGCCAAATCAACA
1 TATAGCGCGGTACAGGGGGCGCACTATACCCCACGTGAAC-CC-AATCAACA
* *
763673 TATAGCGCAGTTCAGGGG
1 TATAGCGCGGTACAGGGG
763691 ACGCGCTTTA
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
49 2 0.03
50 2 0.03
51 54 0.92
52 1 0.02
ACGTcount: A:0.27, C:0.28, G:0.29, T:0.16
Consensus pattern (50 bp):
TATAGCGCGGTACAGGGGGCGCACTATACCCCACGTGAACCCAATCAACA
Found at i:765474 original size:23 final size:22
Alignment explanation
Indices: 765448--765507 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 22
765438 ATAATATCAC
*
765448 ATATTATTATAATTTAACTTAGT
1 ATATTATTATAATTTAA-TTAAT
*
765471 ATATTATTAAAATATTAATTAAT
1 ATATTATTATAAT-TTAATTAAT
* *
765494 ATATTGTAATAATT
1 ATATTATTATAATT
765508 AATATTTATT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
22 1 0.03
23 26 0.84
24 4 0.13
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (22 bp):
ATATTATTATAATTTAATTAAT
Found at i:765546 original size:102 final size:104
Alignment explanation
Indices: 765265--765567 Score: 277
Period size: 102 Copynumber: 2.9 Consensus size: 104
765255 AGTATATTAT
* *
765265 TATAATATTAAAAATATTAATGAATATATTTTAATAATTAATATTTATTAAAATGATATTAAAAT
1 TATATTATT-AAAATATTAATTAATATA-TTTAATAATTAATATTTATTAAAATGATATTAAAAT
* **
765330 ATTATATCAATATTAAATACATAAAATAATATTATTTTGAG
64 ATTATATCAATATCAAATACATAAAATAATATTAACTTGAG
* * * * * * *
765371 TAT-TTAATGAAATTAATAAATAATATAAATTT-AT--TT-ATACATTATT-ATAT-ATTACTAA
1 TATATT-ATTAAAATATTAATTAATAT--ATTTAATAATTAATA-TTTATTAAAATGA-TATTAA
** * * **
765429 AATAAGAATAT-AATATCACATA-TTATTATAAT-TTAACTT-AG
61 AAT-ATTATATCAATATCAAATACATAAAATAATATTAACTTGAG
765470 TATATTATTAAAATATTAATTAATATATTGTAATAATTAATATTTATTAAAATGATATTAAAATA
1 TATATTATTAAAATATTAATTAATATATT-TAATAATTAATATTTATTAAAATGATATTAAAATA
*
765535 TTATATCAATATTAAATACATAAAATAATATTA
65 TTATATCAATATCAAATACATAAAATAATATTA
765568 TTTTGAATAT
Statistics
Matches: 148, Mismatches: 32, Indels: 36
0.69 0.15 0.17
Matches are distributed among these distances:
97 3 0.02
98 1 0.01
99 23 0.16
100 7 0.05
101 20 0.14
102 46 0.31
103 20 0.14
104 3 0.02
105 16 0.11
106 8 0.05
107 1 0.01
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (104 bp):
TATATTATTAAAATATTAATTAATATATTTAATAATTAATATTTATTAAAATGATATTAAAATAT
TATATCAATATCAAATACATAAAATAATATTAACTTGAG
Found at i:765596 original size:213 final size:208
Alignment explanation
Indices: 765160--765580 Score: 733
Period size: 204 Copynumber: 2.0 Consensus size: 208
765150 TAAATAACAT
*
765160 TTTAATGAAATTAATAAATAATATAAATTTATTTATACTTTATTATATATTACTAAAATAAGAAT
1 TTTAATGAAATTAATAAATAATATAAATTTATTTATACATTATTATATATTACTAAAATAAGAAT
765225 ATAATATCACATATTATTATAATTTAACTTAGTATATTATTATAATATTAAAAATATTAATGAAT
66 ATAATATCACATATTATTATAATTTAACTTAG----TTATTAT-ATATTAAAAATATTAATGAAT
*
765290 ATATTTTAATAATTAATATTTATTAAAATGATATTAAAATATTATATCAATATTAAATACATAAA
126 ATATTGTAATAATTAATATTTATTAAAATGATATTAAAATATTATATCAATATTAAATACATAAA
765355 ATAATATTATTTTGAGTA
191 ATAATATTATTTTGAGTA
765373 TTTAATGAAATTAATAAATAATATAAATTTATTTATACATTATTATATATTACTAAAATAAGAAT
1 TTTAATGAAATTAATAAATAATATAAATTTATTTATACATTATTATATATTACTAAAATAAGAAT
*
765438 ATAATATCACATATTATTATAATTTAACTTAG-TA-TAT-TATT-AAAATATTAATTAATATATT
66 ATAATATCACATATTATTATAATTTAACTTAGTTATTATATATTAAAAATATTAATGAATATATT
765499 GTAATAATTAATATTTATTAAAATGATATTAAAATATTATATCAATATTAAATACATAAAATAAT
131 GTAATAATTAATATTTATTAAAATGATATTAAAATATTATATCAATATTAAATACATAAAATAAT
*
765564 ATTATTTTGAATA
196 ATTATTTTGAGTA
765577 TTTA
1 TTTA
765581 TGCTTTGAAA
Statistics
Matches: 204, Mismatches: 4, Indels: 9
0.94 0.02 0.04
Matches are distributed among these distances:
204 99 0.49
205 4 0.02
207 3 0.01
208 2 0.01
213 96 0.47
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.45
Consensus pattern (208 bp):
TTTAATGAAATTAATAAATAATATAAATTTATTTATACATTATTATATATTACTAAAATAAGAAT
ATAATATCACATATTATTATAATTTAACTTAGTTATTATATATTAAAAATATTAATGAATATATT
GTAATAATTAATATTTATTAAAATGATATTAAAATATTATATCAATATTAAATACATAAAATAAT
ATTATTTTGAGTA
Found at i:768317 original size:18 final size:18
Alignment explanation
Indices: 768294--768373 Score: 133
Period size: 18 Copynumber: 4.4 Consensus size: 18
768284 ATAGGAGCTT
768294 GGAACTCAATTGTTAAAA
1 GGAACTCAATTGTTAAAA
768312 GGAACTCAATTGTTAAAA
1 GGAACTCAATTGTTAAAA
768330 GGAACTCAATTGTTAAAA
1 GGAACTCAATTGTTAAAA
* *
768348 GTAACTCAATTATTAAAA
1 GGAACTCAATTGTTAAAA
*
768366 GGTACTCA
1 GGAACTCA
768374 TTACAATCGG
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 58 1.00
ACGTcount: A:0.44, C:0.12, G:0.15, T:0.29
Consensus pattern (18 bp):
GGAACTCAATTGTTAAAA
Found at i:772231 original size:20 final size:20
Alignment explanation
Indices: 772194--772232 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
772184 AGCTAAAAAT
*
772194 GGTATCGATACACTGGGGTC
1 GGTATCGATACACAGGGGTC
*
772214 GGTATCGATACTCAGGGGT
1 GGTATCGATACACAGGGGT
772233 TAGTATTGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.18, G:0.36, T:0.26
Consensus pattern (20 bp):
GGTATCGATACACAGGGGTC
Found at i:772238 original size:20 final size:20
Alignment explanation
Indices: 772195--772245 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
772185 GCTAAAAATG
* * *
772195 GTATCGATACACTGGGGTCG
1 GTATCGATACTCAGGGGTCA
*
772215 GTATCGATACTCAGGGGTTA
1 GTATCGATACTCAGGGGTCA
*
772235 GTATTGATACT
1 GTATCGATACT
772246 GAAGGCTTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (20 bp):
GTATCGATACTCAGGGGTCA
Found at i:773509 original size:23 final size:22
Alignment explanation
Indices: 773479--773521 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
773469 TAAAAATTTG
773479 ATTAATT-ATAAGATTAATATCA
1 ATTAATTAATAA-ATTAATATCA
773501 ATTAGATTAATAAATTAATAT
1 ATTA-ATTAATAAATTAATAT
773522 TTTAAATGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 4 0.21
23 11 0.58
24 4 0.21
ACGTcount: A:0.51, C:0.02, G:0.05, T:0.42
Consensus pattern (22 bp):
ATTAATTAATAAATTAATATCA
Found at i:773805 original size:3 final size:3
Alignment explanation
Indices: 773797--773826 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
773787 ATCCTCAAAA
773797 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
773827 TATTCCACGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:789428 original size:136 final size:133
Alignment explanation
Indices: 789169--789845 Score: 427
Period size: 137 Copynumber: 4.9 Consensus size: 133
789159 TTAAGGAATT
* * * *
789169 ACGCCGAGCGCTTCAGCGTT-AAGAGTTGGAAGGAGAACAGAGTTCATATCGAGCGCTTCCAGTG
1 ACGCCGAGCACTTCAACATTGAA-AGTTGGAAGG-GGACAGAGTTCATATCGAGCGCTTCCAGTG
* * ** * *
789233 GGGAGTAGGCCGGATAACCTGATCTTACGCCGGGTGCTCTAACGTGTGGAGTATGCAGGGTATTC
64 GGGAGTAGGCAGGATGACCTGATCTTACG-CGGACGCTCTAACGTGTGGAGTA-GCAGGGTACTA
* *
789298 TTATTTC
127 TAATATC
* * * *
789305 ACGCTGAGCACTTC-AC-TGTTATAAGTTGGAAAGGGGACAGAGTTCATACCGAGTGCTTCCAGT
1 ACGCCGAGCACTTCAACAT-TGA-AAGTTGG-AAGGGGACAGAGTTCATATCGAGCGCTTCCAGT
* *
789368 GGGGAGTAGGCAGGATGACCTGATCTTACGTCGGACGCTCTAACGTGTAGAGTAGACAGGGTGCT
63 GGGGAGTAGGCAGGATGACCTGATCTTACG-CGGACGCTCTAACGTGTGGAGTAG-CAGGGTACT
789433 ATAATATC
126 ATAATATC
* * * * * * * *
789441 ACGCCGAGCACTTCAACATTGAGAGTAGGCAGGGGAGACATAGTACATGTCGAGCGCTTCTAGAG
1 ACGCCGAGCACTTCAACATTGAAAGTTGG-AAGGG-GACAGAGTTCATATCGAGCGCTTCCAGTG
* * * *
789506 GGGAGTAGGTAGGATGACCTGGTCTTACGCCGAGCGCTCTAACGTGTGGAGTAGGCCGTGTGAAA
64 GGGAGTAGGCAGGATGACCTGATCTTACGCGGA-CGCTCTAACGTGTGGAGTA-GCAG-G-G---
*
789571 TAAGATGTGCTTTAATATC
122 T---A----CTATAATATC
** * * * * * ** *
789590 ACGCCGAGTGCTTCAACATTTAGAGTAGGCAGAGGAGACAAAGTGT-ATGCCGAGCGCTTCCAGA
1 ACGCCGAGCACTTCAACATTGAAAGTTGG-A-AGGGGACAGAGT-TCATATCGAGCGCTTCCAGT
* *
789654 GGGGAGTAGGCAGGATGATCTGATCTTAGGTC-GAGCGCTCTAACGTGTGGAGTAGGCAGGGTGT
63 GGGGAGTAGGCAGGATGACCTGATCTTACG-CGGA-CGCTCTAACGTGTGGAGTA-GCA-GG-GT
* * *
789718 CCCA-GAT-TC
123 ACTATAATATC
* * ** * * ** * *
789727 ACGCCGAGCATTTCAAC-GTGTAGGGTAGGTAGGGTAGACAGAGTTCATGCCGAGCGCTTCTAGA
1 ACGCCGAGCACTTCAACATTG-AAAGTTGGAAGGG--GACAGAGTTCATATCGAGCGCTTCCAGT
* *
789791 GGGGAGTAAGCAGGATGACCTGATCTTACGCCGAGCGC-CTTAACGTGTGGAGTAG
63 GGGGAGTAGGCAGGATGACCTGATCTTACGCGGA-CGCTC-TAACGTGTGGAGTAG
789846 GCCGGATGAA
Statistics
Matches: 441, Mismatches: 68, Indels: 64
0.77 0.12 0.11
Matches are distributed among these distances:
134 1 0.00
135 6 0.01
136 135 0.31
137 172 0.39
138 5 0.01
139 2 0.00
142 1 0.00
146 1 0.00
149 114 0.26
150 4 0.01
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.23
Consensus pattern (133 bp):
ACGCCGAGCACTTCAACATTGAAAGTTGGAAGGGGACAGAGTTCATATCGAGCGCTTCCAGTGGG
GAGTAGGCAGGATGACCTGATCTTACGCGGACGCTCTAACGTGTGGAGTAGCAGGGTACTATAAT
ATC
Found at i:789545 original size:137 final size:136
Alignment explanation
Indices: 789169--789994 Score: 587
Period size: 149 Copynumber: 5.9 Consensus size: 136
789159 TTAAGGAATT
* * * * * * ** *
789169 ACGCCGAGCGCTTCAGCGTTAAGAGTTGGAAGGAGA-ACAGAGTTCATATCGAGCGCTTCCAGTG
1 ACGCCGAGCACTTCAAC-TTGAGAGTAGGCAGGGGAGACAGAGTTCATGCCGAGCGCTTCCAGAG
* * * * **
789233 GGGAGTAGGCCGGATAACCTGATCTTACGCCGGGTGCTCTAACGTGTGGAGTATG-CAGGGTATT
65 GGGAGTAGGCAGGATGACCTGATCTTACGCCGAGCGCTCTAACGTGTGGAGTA-GACAGGGTGCT
* * *
789297 CTTATTTC
129 ATAATATC
* * * * * * * * *
789305 ACGCTGAGCACTTC-ACTGTTATAAGTTGGAAAGGG-GACAGAGTTCATACCGAGTGCTTCCAGT
1 ACGCCGAGCACTTCAACT-TGA-GAGTAGGCAGGGGAGACAGAGTTCATGCCGAGCGCTTCCAGA
* *
789368 GGGGAGTAGGCAGGATGACCTGATCTTACGTCG-GACGCTCTAACGTGTAGAGTAGACAGGGTGC
64 GGGGAGTAGGCAGGATGACCTGATCTTACGCCGAG-CGCTCTAACGTGTGGAGTAGACAGGGTGC
789432 TATAATATC
128 TATAATATC
* * * *
789441 ACGCCGAGCACTTCAACATTGAGAGTAGGCAGGGGAGACATAGTACATGTCGAGCGCTTCTAGAG
1 ACGCCGAGCACTTCAAC-TTGAGAGTAGGCAGGGGAGACAGAGTTCATGCCGAGCGCTTCCAGAG
* *
789506 GGGAGTAGGTAGGATGACCTGGTCTTACGCCGAGCGCTCTAACGTGTGGAGTAGGCCGTGTGAAA
65 GGGAGTAGGCAGGATGACCTGATCTTACGCCGAGCGCTCTAACGTGTGGAGTA--------G--A
* * *
789571 TAAGATGTGCTTTAATATC
120 -CAG-GGTGCTATAATATC
** * * *
789590 ACGCCGAGTGCTTCAACATTTAGAGTAGGCAGAGGAGACAAAGTGT-ATGCCGAGCGCTTCCAGA
1 ACGCCGAGCACTTCAAC-TTGAGAGTAGGCAGGGGAGACAGAGT-TCATGCCGAGCGCTTCCAGA
* * * *
789654 GGGGAGTAGGCAGGATGATCTGATCTTAGGTCGAGCGCTCTAACGTGTGGAGTAGGCAGGGTGTC
64 GGGGAGTAGGCAGGATGACCTGATCTTACGCCGAGCGCTCTAACGTGTGGAGTAGACAGGGTG--
* *
789719 CCA-GAT-TC
127 CTATAATATC
* * * * * *
789727 ACGCCGAGCATTTCAACGTGTAGGGTAGGTAGGGTAGACAGAGTTCATGCCGAGCGCTTCTAGAG
1 ACGCCGAGCACTTCAACTTG-AGAGTAGGCAGGGGAGACAGAGTTCATGCCGAGCGCTTCCAGAG
* *
789792 GGGAGTAAGCAGGATGACCTGATCTTACGCCGAGCGC-CTTAACGTGTGGAGTAGGCCGGATGAA
65 GGGAGTAGGCAGGATGACCTGATCTTACGCCGAGCGCTC-TAACGTGTGGAGTA-GAC--A-G--
* *
789856 ATAAAATGTGCTTTAATATC
123 ------GGTGCTATAATATC
* * *** * * * * *
789876 ATGTCGAGTGTTTCAACGTGTG-GGGTAGGCAGTGTAGACATAGTTCATGCTGAGCGCTTCCAGA
1 ACGCCGAGCACTTCAAC-T-TGAGAGTAGGCAGGGGAGACAGAGTTCATGCCGAGCGCTTCCAGA
789940 GGGGAGTAGGCAGGATGACCTGATCTTACGCCGAAAGC-CT-TAACGTGTGGAGTAG
64 GGGGAGTAGGCAGGATGACCTGATCTTACGCCG--AGCGCTCTAACGTGTGGAGTAG
789995 GCCGGGTGAA
Statistics
Matches: 555, Mismatches: 89, Indels: 80
0.77 0.12 0.11
Matches are distributed among these distances:
134 1 0.00
135 5 0.01
136 131 0.24
137 175 0.32
138 8 0.01
139 1 0.00
140 1 0.00
141 2 0.00
145 1 0.00
147 2 0.00
148 5 0.01
149 217 0.39
150 1 0.00
151 5 0.01
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.23
Consensus pattern (136 bp):
ACGCCGAGCACTTCAACTTGAGAGTAGGCAGGGGAGACAGAGTTCATGCCGAGCGCTTCCAGAGG
GGAGTAGGCAGGATGACCTGATCTTACGCCGAGCGCTCTAACGTGTGGAGTAGACAGGGTGCTAT
AATATC
Found at i:789698 original size:149 final size:147
Alignment explanation
Indices: 789428--790011 Score: 626
Period size: 149 Copynumber: 4.0 Consensus size: 147
789418 AGTAGACAGG
* * *
789428 GTGCTATAATATCACGCCGAGCACTTCAACAT-TGAGAGTAGGCAGGGGAGACATAGTACATGTC
1 GTGCTTTAATATCACGCCGAGCACTTCAACATGT-AGAGTAGGCA-GGGAGACATAGTTCATGCC
* * *
789492 GAGCGCTTCTAGAGGGGAGTAGGTAGGATGACCTGGTCTTACGCCGAGCGCTCTAACGTGTGGAG
64 GAGCGCTTCCAGAGGGGAGTAGGCAGGATGACCTGATCTTACGCCGAGCGCTCTAACGTGTGGAG
789557 TAGGCCGTGTGAAATAAGAT
129 TAGGCCG-GTGAAATAAGAT
** * *
789577 GTGCTTTAATATCACGCCGAGTGCTTCAACATTTAGAGTAGGCAGAGGAGACAAAGTGT-ATGCC
1 GTGCTTTAATATCACGCCGAGCACTTCAACATGTAGAGTAGGCAG-GGAGACATAGT-TCATGCC
* * *
789641 GAGCGCTTCCAGAGGGGAGTAGGCAGGATGATCTGATCTTAGGTCGAGCGCTCTAACGTGTGGAG
64 GAGCGCTTCCAGAGGGGAGTAGGCAGGATGACCTGATCTTACGCCGAGCGCTCTAACGTGTGGAG
*
789706 TAGG-CAG-G------G-T
129 TAGGCCGGTGAAATAAGAT
** * * * * *
789716 GT-C-CCAGAT-TCACGCCGAGCATTTCAACGTGTAGGGTAGGTAGGGTAGACAGAGTTCATGCC
1 GTGCTTTA-ATATCACGCCGAGCACTTCAACATGTAGAGTAGGCAGGG-AGACATAGTTCATGCC
* *
789778 GAGCGCTTCTAGAGGGGAGTAAGCAGGATGACCTGATCTTACGCCGAGCGC-CTTAACGTGTGGA
64 GAGCGCTTCCAGAGGGGAGTAGGCAGGATGACCTGATCTTACGCCGAGCGCTC-TAACGTGTGGA
*
789842 GTAGGCCGGATGAAATAAAAT
128 GTAGGCCGG-TGAAATAAGAT
* * *** * * * * *
789863 GTGCTTTAATATCATGTCGAGTGTTTCAACGTGTGGGGTAGGCAGTGTAGACATAGTTCATGCTG
1 GTGCTTTAATATCACGCCGAGCACTTCAACATGTAGAGTAGGCAG-GGAGACATAGTTCATGCCG
789928 AGCGCTTCCAGAGGGGAGTAGGCAGGATGACCTGATCTTACGCCGAAAGC-CT-TAACGTGTGGA
65 AGCGCTTCCAGAGGGGAGTAGGCAGGATGACCTGATCTTACGCCG--AGCGCTCTAACGTGTGGA
789991 GTAGGCCGGGTGAAATAAGAT
128 GTAGGCC-GGTGAAATAAGAT
790012 TATCTAGGCA
Statistics
Matches: 366, Mismatches: 44, Indels: 50
0.80 0.10 0.11
Matches are distributed among these distances:
136 4 0.01
137 103 0.28
138 5 0.01
139 3 0.01
140 2 0.01
146 1 0.00
147 4 0.01
148 5 0.01
149 231 0.63
150 5 0.01
151 3 0.01
ACGTcount: A:0.26, C:0.18, G:0.33, T:0.23
Consensus pattern (147 bp):
GTGCTTTAATATCACGCCGAGCACTTCAACATGTAGAGTAGGCAGGGAGACATAGTTCATGCCGA
GCGCTTCCAGAGGGGAGTAGGCAGGATGACCTGATCTTACGCCGAGCGCTCTAACGTGTGGAGTA
GGCCGGTGAAATAAGAT
Found at i:789871 original size:286 final size:286
Alignment explanation
Indices: 789340--790002 Score: 867
Period size: 286 Copynumber: 2.3 Consensus size: 286
789330 TTGGAAAGGG
* * * *
789340 GACAGAGTTCATACCGAGTGCTTCCAGTGGGGAGTAGGCAGGATGACCTGATCTTACGTCG-GAC
1 GACAAAGTTCATGCCGAGCGCTTCCAGAGGGGAGTAGGCAGGATGACCTGATCTTACGTCGAG-C
* * *
789404 GCTCTAACGTGTAGAGTAGACAGGGTGCTATAATATCACGCCGAGCACTTCAACATTGAGAGTAG
65 GCTCTAACGTGTGGAGTAGGCAGGGTGCCATAATATCACGCCGAGCACTTCAACATTGAGAGTAG
* * * * *
789469 GCAGGGGAGACATAGTACATGTCGAGCGCTTCTAGAGGGGAGTAGGTAGGATGACCTGGTCTTAC
130 GCAGGGGAGACAGAGTACATGCCGAGCGCTTCTAGAGGGGAGTAAGCAGGATGACCTGATCTTAC
*
789534 GCCGAGCGCTCTAACGTGTGGAGTAGGCCGTGTGAAATAAGATGTGCTTTAATATCACGCCGAGT
195 GCCGAGCGCTCTAACGTGTGGAGTAGGCCGTGTGAAATAAAATGTGCTTTAATATCACGCCGAGT
*
789599 GCTTCAACATTTAGAGTAGGCAGAGGA
260 GCTTCAACATGTAGAGTAGGCAGAGGA
* *
789626 GACAAAGTGT-ATGCCGAGCGCTTCCAGAGGGGAGTAGGCAGGATGATCTGATCTTAGGTCGAGC
1 GACAAAGT-TCATGCCGAGCGCTTCCAGAGGGGAGTAGGCAGGATGACCTGATCTTACGTCGAGC
* * * *
789690 GCTCTAACGTGTGGAGTAGGCAGGGTGTCCCA-GAT-TCACGCCGAGCATTTCAAC-GTGTAGGG
65 GCTCTAACGTGTGGAGTAGGCAGGGTG--CCATAATATCACGCCGAGCACTTCAACATTG-AGAG
* * *
789752 TAGGTAGGGTAGACAGAGTTCATGCCGAGCGCTTCTAGAGGGGAGTAAGCAGGATGACCTGATCT
127 TAGGCAGGGGAGACAGAGTACATGCCGAGCGCTTCTAGAGGGGAGTAAGCAGGATGACCTGATCT
* *
789817 TACGCCGAGCGC-CTTAACGTGTGGAGTAGGCCG-GATGAAATAAAATGTGCTTTAATATCATGT
192 TACGCCGAGCGCTC-TAACGTGTGGAGTAGGCCGTG-TGAAATAAAATGTGCTTTAATATCACGC
* * * * * *
789880 CGAGTGTTTCAACGTGTGGGGTAGGCAGTGTA
255 CGAGTGCTTCAACATGTAGAGTAGGCAGAGGA
* * *
789912 GACATAGTTCATGCTGAGCGCTTCCAGAGGGGAGTAGGCAGGATGACCTGATCTTACGCCGAAAG
1 GACAAAGTTCATGCCGAGCGCTTCCAGAGGGGAGTAGGCAGGATGACCTGATCTTACGTCG--AG
*
789977 C-CT-TAACGTGTGGAGTAGGCCGGGTG
64 CGCTCTAACGTGTGGAGTAGGCAGGGTG
790003 AAATAAGATT
Statistics
Matches: 330, Mismatches: 37, Indels: 20
0.85 0.10 0.05
Matches are distributed among these distances:
285 5 0.02
286 314 0.95
287 6 0.02
288 5 0.02
ACGTcount: A:0.25, C:0.19, G:0.33, T:0.23
Consensus pattern (286 bp):
GACAAAGTTCATGCCGAGCGCTTCCAGAGGGGAGTAGGCAGGATGACCTGATCTTACGTCGAGCG
CTCTAACGTGTGGAGTAGGCAGGGTGCCATAATATCACGCCGAGCACTTCAACATTGAGAGTAGG
CAGGGGAGACAGAGTACATGCCGAGCGCTTCTAGAGGGGAGTAAGCAGGATGACCTGATCTTACG
CCGAGCGCTCTAACGTGTGGAGTAGGCCGTGTGAAATAAAATGTGCTTTAATATCACGCCGAGTG
CTTCAACATGTAGAGTAGGCAGAGGA
Found at i:800451 original size:21 final size:21
Alignment explanation
Indices: 800425--800468 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
800415 TCTTCGTCAC
800425 TACTTTAAATAACGCAGTACA
1 TACTTTAAATAACGCAGTACA
800446 TACTTTAAATAACGCAGTACA
1 TACTTTAAATAACGCAGTACA
800467 TA
1 TA
800469 AACTGATTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.43, C:0.18, G:0.09, T:0.30
Consensus pattern (21 bp):
TACTTTAAATAACGCAGTACA
Found at i:804716 original size:16 final size:16
Alignment explanation
Indices: 804695--804725 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
804685 AATTTAAATC
804695 GAATTTATAAATAGTT
1 GAATTTATAAATAGTT
*
804711 GAATTTATAACTAGT
1 GAATTTATAAATAGT
804726 ATGCGCTCCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.03, G:0.13, T:0.42
Consensus pattern (16 bp):
GAATTTATAAATAGTT
Found at i:805357 original size:7 final size:7
Alignment explanation
Indices: 805345--805381 Score: 56
Period size: 7 Copynumber: 5.3 Consensus size: 7
805335 GGGAGAATGG
805345 TTAGGGT
1 TTAGGGT
805352 TTAGGGT
1 TTAGGGT
805359 TTAGGGT
1 TTAGGGT
**
805366 TTAGAAT
1 TTAGGGT
805373 TTAGGGT
1 TTAGGGT
805380 TT
1 TT
805382 TAATAACAAC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.19, C:0.00, G:0.35, T:0.46
Consensus pattern (7 bp):
TTAGGGT
Found at i:805476 original size:2 final size:2
Alignment explanation
Indices: 805469--805495 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
805459 TAATTAAATT
805469 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
805496 TCAACAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:811553 original size:31 final size:30
Alignment explanation
Indices: 811502--811568 Score: 89
Period size: 31 Copynumber: 2.2 Consensus size: 30
811492 GTGATATAAT
* * *
811502 ATATATTATTTTATAATTTTAAATGATGTG
1 ATATATCATATTATAATTTTAAATGATATG
*
811532 ATATATCATATTATCAATTTTAGATGATATG
1 ATATATCATATTAT-AATTTTAAATGATATG
811563 ATATAT
1 ATATAT
811569 GTCACGTCAC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 12 0.38
31 20 0.62
ACGTcount: A:0.39, C:0.03, G:0.09, T:0.49
Consensus pattern (30 bp):
ATATATCATATTATAATTTTAAATGATATG
Found at i:826635 original size:22 final size:22
Alignment explanation
Indices: 826607--826678 Score: 85
Period size: 22 Copynumber: 3.2 Consensus size: 22
826597 GTCGAGGGTT
826607 TCATAGGTCCTTTGGGACATAC
1 TCATAGGTCCTTTGGGACATAC
826629 TCATAGGT-CTTTCGGGACATA-
1 TCATAGGTCCTTT-GGGACATAC
* *
826650 TACATAGGTCCTTCGGGACAAATC
1 T-CATAGGTCCTTTGGGACATA-C
826674 TCATA
1 TCATA
826679 TGCCACTCAG
Statistics
Matches: 43, Mismatches: 2, Indels: 9
0.80 0.04 0.17
Matches are distributed among these distances:
21 5 0.12
22 30 0.70
23 7 0.16
24 1 0.02
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (22 bp):
TCATAGGTCCTTTGGGACATAC
Found at i:834281 original size:2 final size:2
Alignment explanation
Indices: 834240--834265 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
834230 CCAAACTAAC
834240 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
834266 TGTATTATAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:834468 original size:89 final size:89
Alignment explanation
Indices: 834352--834521 Score: 220
Period size: 89 Copynumber: 1.9 Consensus size: 89
834342 GTTAACTTTA
* * *
834352 AAAAATATATTTTATTTTTATCTTAACTTATTGAATATA-TTTTATTATCAAATTAA-ATTAAAA
1 AAAAATATATTTTACTCTTATCTTAACTTA-AGAATATATTTTTATTATCAAATTAACATTAAAA
*
834415 TATATATTTTATTCTTATTTTGGTTT
65 -ATATATTGTATTCTTATTTTGGTTT
** *
834441 AAAAATATATTTTTACTCTTATC-TAACTTAAGAATATATTTTTATTATCATTTTAACTTTTAAA
1 AAAAATATA-TTTTACTCTTATCTTAACTTAAGAATATATTTTTATTATCAAATTAAC-ATTAAA
834505 AATATATTGTATTCTTA
64 AATATATTGTATTCTTA
834522 CTTAAATTAT
Statistics
Matches: 70, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
88 7 0.10
89 31 0.44
90 26 0.37
91 6 0.09
ACGTcount: A:0.38, C:0.06, G:0.03, T:0.53
Consensus pattern (89 bp):
AAAAATATATTTTACTCTTATCTTAACTTAAGAATATATTTTTATTATCAAATTAACATTAAAAA
TATATTGTATTCTTATTTTGGTTT
Found at i:835711 original size:36 final size:36
Alignment explanation
Indices: 835663--835734 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
835653 AGGTCGCCAT
*
835663 GGCATCCGTTCGAGGTAGGTCGCCAGGGCATCCGAG
1 GGCATCCATTCGAGGTAGGTCGCCAGGGCATCCGAG
*
835699 GGCATCCATTCGAGGTAGGTCTCCAGGGCATCCGAG
1 GGCATCCATTCGAGGTAGGTCGCCAGGGCATCCGAG
835735 CGAGCTATGC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.18, C:0.28, G:0.36, T:0.18
Consensus pattern (36 bp):
GGCATCCATTCGAGGTAGGTCGCCAGGGCATCCGAG
Found at i:836575 original size:21 final size:21
Alignment explanation
Indices: 836550--836589 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
836540 GTTAATTAGT
836550 TTGTTAGTTTAAGTTATATTA
1 TTGTTAGTTTAAGTTATATTA
836571 TTGTTAGTTTAAGTTATAT
1 TTGTTAGTTTAAGTTATAT
836590 CATATAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.15, T:0.57
Consensus pattern (21 bp):
TTGTTAGTTTAAGTTATATTA
Found at i:836647 original size:41 final size:40
Alignment explanation
Indices: 836599--836700 Score: 118
Period size: 40 Copynumber: 2.5 Consensus size: 40
836589 TCATATAGAA
836599 ATAAAAAAATATTTAATTAGTATGTT-T-GATAGTTATAT
1 ATAAAAAAATATTTAATTAGTATGTTATCGATAGTTATAT
* * * *
836637 ATTAATAAAAATAATTAGTTAGTTTGTTAGTCGTTAGTTATAT
1 A-TAA-AAAAATATTTAATTAGTATGTTA-TCGATAGTTATAT
*
836680 ATAAAAAAATATGTAATTAGT
1 ATAAAAAAATATTTAATTAGT
836701 TTGTGTTAGT
Statistics
Matches: 52, Mismatches: 7, Indels: 7
0.79 0.11 0.11
Matches are distributed among these distances:
38 1 0.02
39 3 0.06
40 19 0.37
41 14 0.27
42 4 0.08
43 11 0.21
ACGTcount: A:0.44, C:0.01, G:0.12, T:0.43
Consensus pattern (40 bp):
ATAAAAAAATATTTAATTAGTATGTTATCGATAGTTATAT
Found at i:836711 original size:36 final size:36
Alignment explanation
Indices: 836599--836712 Score: 95
Period size: 40 Copynumber: 2.9 Consensus size: 36
836589 TCATATAGAA
* *
836599 ATAAAAAAATATTTAATTAGTATGTTTGATAGTTATAT
1 ATAAAAAAATA-TTAATTAGTAT-TGTGTTAGTTATAT
* *
836637 ATTAATAAAAATAATTAGTTAGTTTGTTAGTCGTTAGTTATAT
1 A-TAA-AAAAAT-ATTAATTAG--TATT-GT-GTTAGTTATAT
836680 ATAAAAAAATATGTAATTAGT-TTGTGTTAGTTA
1 ATAAAAAAATAT-TAATTAGTATTGTGTTAGTTA
836713 AATAGTTAAG
Statistics
Matches: 63, Mismatches: 5, Indels: 18
0.73 0.06 0.21
Matches are distributed among these distances:
36 8 0.13
37 2 0.03
38 3 0.05
39 4 0.06
40 15 0.24
41 14 0.22
42 6 0.10
43 11 0.17
ACGTcount: A:0.41, C:0.01, G:0.13, T:0.45
Consensus pattern (36 bp):
ATAAAAAAATATTAATTAGTATTGTGTTAGTTATAT
Found at i:836871 original size:15 final size:16
Alignment explanation
Indices: 836818--836872 Score: 55
Period size: 15 Copynumber: 3.6 Consensus size: 16
836808 TATTAGTTTA
836818 AGTTATATTAAAGAAT
1 AGTTATATTAAAGAAT
**
836834 AGTT-TATTAGTTG-A-
1 AGTTATATTA-AAGAAT
836848 AGTTATATTAAAGAAT
1 AGTTATATTAAAGAAT
836864 AGTT-TATTA
1 AGTTATATTA
836873 GTTGTTTAAG
Statistics
Matches: 31, Mismatches: 4, Indels: 9
0.70 0.09 0.20
Matches are distributed among these distances:
14 5 0.16
15 17 0.55
16 9 0.29
ACGTcount: A:0.42, C:0.00, G:0.15, T:0.44
Consensus pattern (16 bp):
AGTTATATTAAAGAAT
Found at i:836876 original size:30 final size:30
Alignment explanation
Indices: 836771--836876 Score: 133
Period size: 30 Copynumber: 3.5 Consensus size: 30
836761 TTTAGTTAAT
* * * *
836771 TAGTTTTTTAGTAGTAAATTATAATTAAAAAA
1 TAGTTTATTAGTTG-AAGTTAT-ATTAAAGAA
*
836803 TCA-TTTATTAGTTTAAGTTATATTAAAGAA
1 T-AGTTTATTAGTTGAAGTTATATTAAAGAA
836833 TAGTTTATTAGTTGAAGTTATATTAAAGAA
1 TAGTTTATTAGTTGAAGTTATATTAAAGAA
836863 TAGTTTATTAGTTG
1 TAGTTTATTAGTTG
836877 TTTAAGAGAA
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
29 1 0.02
30 49 0.74
31 6 0.09
32 9 0.14
33 1 0.02
ACGTcount: A:0.40, C:0.01, G:0.13, T:0.46
Consensus pattern (30 bp):
TAGTTTATTAGTTGAAGTTATATTAAAGAA
Found at i:836988 original size:4 final size:4
Alignment explanation
Indices: 836979--837004 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
836969 GTGTTGTAAA
836979 TTAG TTAG TTAG TTAG TTAG TTAG TT
1 TTAG TTAG TTAG TTAG TTAG TTAG TT
837005 TATATTAGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.23, T:0.54
Consensus pattern (4 bp):
TTAG
Found at i:839367 original size:60 final size:59
Alignment explanation
Indices: 839298--839483 Score: 191
Period size: 60 Copynumber: 3.1 Consensus size: 59
839288 AATTTTAACT
* * * *
839298 AATCATTACTAT-TAAATCATTAAGTATTAATAATAATTTTATTATTACTAATCATTACTA
1 AATCATTACTATCAAAAT-ATTAAATATTAATAATAA-ATCATTATTACTAATCATTACTA
839358 AATCATTACTATCAAAATATTAAATATTAATAATAAATCATTATTACTAATCATTACTA
1 AATCATTACTATCAAAATATTAAATATTAATAATAAATCATTATTACTAATCATTACTA
* * * * *
839417 AATAATTA-T-T-ATAATTTTAAATATAAAATCATTATTAAATCATTATTATCAAATCATTACTA
1 AATCATTACTATCAAAATATTAAATAT-TAAT-A--A-TAAATCATTATTA-CTAATCATTACTA
839479 AATCA
1 AATCA
839484 AATCATATCA
Statistics
Matches: 109, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
56 12 0.11
57 4 0.04
58 2 0.02
59 28 0.26
60 30 0.28
61 17 0.16
62 16 0.15
ACGTcount: A:0.47, C:0.10, G:0.01, T:0.42
Consensus pattern (59 bp):
AATCATTACTATCAAAATATTAAATATTAATAATAAATCATTATTACTAATCATTACTA
Found at i:839458 original size:11 final size:11
Alignment explanation
Indices: 839391--839483 Score: 56
Period size: 11 Copynumber: 8.6 Consensus size: 11
839381 ATATTAATAA
839391 TAAATCATTAT
1 TAAATCATTAT
*
839402 TACTAATCATTAC
1 TA--AATCATTAT
*
839415 TAAATAATTAT
1 TAAATCATTAT
*
839426 T--ATAATT-T
1 TAAATCATTAT
839434 TAAAT-A-TA-
1 TAAATCATTAT
839442 -AAATCATTAT
1 TAAATCATTAT
839452 TAAATCATTATT
1 TAAATCATTA-T
*
839464 ATCAAATCATTAC
1 -T-AAATCATTAT
839477 TAAATCA
1 TAAATCA
839484 AATCATATCA
Statistics
Matches: 66, Mismatches: 4, Indels: 24
0.70 0.04 0.26
Matches are distributed among these distances:
7 4 0.06
8 4 0.06
9 9 0.14
10 2 0.03
11 25 0.38
12 2 0.03
13 11 0.17
14 9 0.14
ACGTcount: A:0.47, C:0.11, G:0.00, T:0.42
Consensus pattern (11 bp):
TAAATCATTAT
Found at i:839470 original size:14 final size:14
Alignment explanation
Indices: 839447--839489 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
839437 ATATAAAATC
*
839447 ATTATTAAATCATT
1 ATTATCAAATCATT
839461 ATTATCAAATCATT
1 ATTATCAAATCATT
*
839475 ACTAAATCAAATCAT
1 A-T-TATCAAATCAT
839490 ATCATTATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 14 0.56
15 1 0.04
16 10 0.40
ACGTcount: A:0.47, C:0.14, G:0.00, T:0.40
Consensus pattern (14 bp):
ATTATCAAATCATT
Found at i:839767 original size:14 final size:14
Alignment explanation
Indices: 839744--839789 Score: 65
Period size: 14 Copynumber: 3.3 Consensus size: 14
839734 TTTAGTAATA
*
839744 ATTATTAAATCATT
1 ATTATAAAATCATT
839758 ATTATAAAATCATT
1 ATTATAAAATCATT
**
839772 ATTATAATTTCATT
1 ATTATAAAATCATT
839786 ATTA
1 ATTA
839790 GTAATCATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (14 bp):
ATTATAAAATCATT
Found at i:839862 original size:60 final size:59
Alignment explanation
Indices: 839747--839910 Score: 179
Period size: 60 Copynumber: 2.7 Consensus size: 59
839737 AGTAATAATT
* * * **
839747 ATTAAATCATT-ATTATAAAATCATTATTA-TAATTTCATTATTAGTAATCATTACTATCAAATG
1 ATTAAAT-ATTAATAAT-AAATCATTATTACTAA--TCATTACTA--AATTATTACTATCAAAAC
* * *
839810 ATTAAATATTAATAATAATTTTATTATTACTAATCATTACTAAATTATTACTATTAAAAC
1 ATTAAATATTAATAATAA-ATCATTATTACTAATCATTACTAAATTATTACTATCAAAAC
839870 ATTAAATATTAATAATAAATCATTATTACTAATCATTACTA
1 ATTAAATATTAATAATAAATCATTATTACTAATCATTACTA
839911 TCAAATTATT
Statistics
Matches: 88, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
59 21 0.24
60 32 0.36
62 13 0.15
63 19 0.22
64 3 0.03
ACGTcount: A:0.46, C:0.09, G:0.01, T:0.44
Consensus pattern (59 bp):
ATTAAATATTAATAATAAATCATTATTACTAATCATTACTAAATTATTACTATCAAAAC
Found at i:839903 original size:13 final size:12
Alignment explanation
Indices: 839887--840104 Score: 52
Period size: 11 Copynumber: 18.2 Consensus size: 12
839877 ATTAATAATA
839887 AATCATTATTACT
1 AATCATTATTA-T
*
839900 AATCATTACTAT
1 AATCATTATTAT
839912 CAA--ATTATTA-
1 -AATCATTATTAT
*
839922 AAT-ATTAATAAT
1 AATCATT-ATTAT
839934 AATTTCATTATTACT
1 AA--TCATTATTA-T
*
839949 AATCATTACTA-
1 AATCATTATTAT
* *
839960 AATTATTACTAT
1 AATCATTATTAT
**
839972 CAA--AACATTA-
1 -AATCATTATTAT
*
839982 AAT-ATTAATAAT
1 AATCATT-ATTAT
839994 AAATCATTATTACT
1 A-ATCATTATTA-T
*
840008 AATCATTACTA-
1 AATCATTATTAT
*
840019 AATAATTATTAT
1 AATCATTATTAT
* *
840031 AAT-TTTAAATATT
1 AATCATT-ATTA-T
840044 ATATCATTATTA-
1 A-ATCATTATTAT
*
840056 AATCATGATTAT
1 AATCATTATTAT
*
840068 CAAATCATTACTA-
1 --AATCATTATTAT
* *
840081 AATCA-AATCAT
1 AATCATTATTAT
840092 -ATCATTATTAT
1 AATCATTATTAT
840103 AA
1 AA
840105 ACCAAACCAG
Statistics
Matches: 150, Mismatches: 28, Indels: 55
0.64 0.12 0.24
Matches are distributed among these distances:
9 4 0.03
10 10 0.07
11 55 0.37
12 12 0.08
13 38 0.25
14 23 0.15
15 8 0.05
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.42
Consensus pattern (12 bp):
AATCATTATTAT
Found at i:839928 original size:21 final size:21
Alignment explanation
Indices: 839796--839928 Score: 62
Period size: 21 Copynumber: 6.2 Consensus size: 21
839786 ATTAGTAATC
*
839796 ATTACTATCAAATGATTAAAT
1 ATTACTATCAAATTATTAAAT
* *
839817 ATTA--ATAATAATT-TT-ATT
1 ATTACTATCA-AATTATTAAAT
*
839835 ATTACTAATC--ATTACTAAATT
1 ATTACT-ATCAAATTATTAAA-T
* **
839856 ATTACTATTAAAACATTAAAT
1 ATTACTATCAAATTATTAAAT
* *
839877 ATTAATAATAAATCATTATTACTAAT
1 ATTACT-ATCAA--ATTATTA--AAT
839903 CATTACTATCAAATTATTAAAT
1 -ATTACTATCAAATTATTAAAT
839925 ATTA
1 ATTA
839929 ATAATAATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 30
0.64 0.13 0.24
Matches are distributed among these distances:
18 9 0.11
19 6 0.07
20 6 0.07
21 23 0.28
22 13 0.16
24 12 0.15
26 7 0.09
27 5 0.06
ACGTcount: A:0.47, C:0.09, G:0.01, T:0.43
Consensus pattern (21 bp):
ATTACTATCAAATTATTAAAT
Found at i:839957 original size:59 final size:59
Alignment explanation
Indices: 839894--840083 Score: 217
Period size: 59 Copynumber: 3.2 Consensus size: 59
839884 ATAAATCATT
* *
839894 ATTACT-AATCATTACTATCAAATTATTAAATATTAATAATAATTTCATTATTACTAATC
1 ATTACTAAATAATTACTATCAAATTATTAAATATTAATAATAA-ATCATTATTACTAATC
* **
839953 ATTACTAAATTATTACTATCAAAACATTAAATATTAATAATAAATCATTATTACTAATC
1 ATTACTAAATAATTACTATCAAATTATTAAATATTAATAATAAATCATTATTACTAATC
* * *
840012 ATTACTAAATAATTATTAT--AATT-TTAAATATTATATCATTATTAAATCATGATTATCAAATC
1 ATTACTAAATAATTACTATCAAATTATTAAATATTA-AT-A--A-TAAATCATTATTA-CTAATC
840074 ATTACTAAAT
1 ATTACTAAAT
840084 CAAATCATAT
Statistics
Matches: 114, Mismatches: 10, Indels: 11
0.84 0.07 0.08
Matches are distributed among these distances:
56 10 0.09
57 4 0.04
58 1 0.01
59 38 0.33
60 34 0.30
61 12 0.11
62 15 0.13
ACGTcount: A:0.46, C:0.11, G:0.01, T:0.43
Consensus pattern (59 bp):
ATTACTAAATAATTACTATCAAATTATTAAATATTAATAATAAATCATTATTACTAATC
Found at i:840029 original size:108 final size:108
Alignment explanation
Indices: 839781--840018 Score: 440
Period size: 108 Copynumber: 2.2 Consensus size: 108
839771 TATTATAATT
* * *
839781 TCATTATTAGTAATCATTACTATCAAATGATTAAATATTAATAATAATTTTATTATTACTAATCA
1 TCATTATTACTAATCATTACTATCAAATTATTAAATATTAATAATAATTTCATTATTACTAATCA
*
839846 TTACTAAATTATTACTATTAAAACATTAAATATTAATAATAAA
66 TTACTAAATTATTACTATCAAAACATTAAATATTAATAATAAA
839889 TCATTATTACTAATCATTACTATCAAATTATTAAATATTAATAATAATTTCATTATTACTAATCA
1 TCATTATTACTAATCATTACTATCAAATTATTAAATATTAATAATAATTTCATTATTACTAATCA
839954 TTACTAAATTATTACTATCAAAACATTAAATATTAATAATAAA
66 TTACTAAATTATTACTATCAAAACATTAAATATTAATAATAAA
839997 TCATTATTACTAATCATTACTA
1 TCATTATTACTAATCATTACTA
840019 AATAATTATT
Statistics
Matches: 126, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
108 126 1.00
ACGTcount: A:0.46, C:0.11, G:0.01, T:0.42
Consensus pattern (108 bp):
TCATTATTACTAATCATTACTATCAAATTATTAAATATTAATAATAATTTCATTATTACTAATCA
TTACTAAATTATTACTATCAAAACATTAAATATTAATAATAAA
Found at i:841166 original size:64 final size:65
Alignment explanation
Indices: 841098--841241 Score: 211
Period size: 64 Copynumber: 2.2 Consensus size: 65
841088 TGAAACACTT
* * *
841098 AGTGCATCGGTGCACT-AAGTGTGCATCAATGCATAAAATGCATTCGATGTTTTGAAT-AAGCCT
1 AGTGCATCGATGCA-TGAAGTGTGCATCAATGCATAAAATGCATTCGATGTTTTCAATAAAACCT
841161 A
65 A
* * *
841162 AGTGCATCGATGCATGATGTGTGCATCGATGCATAAAATGCATTCGATGTTTTCATTAAAACCTA
1 AGTGCATCGATGCATGAAGTGTGCATCAATGCATAAAATGCATTCGATGTTTTCAATAAAACCTA
841227 AGTGCATCGATGCAT
1 AGTGCATCGATGCAT
841242 AAAATGCATT
Statistics
Matches: 72, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
63 1 0.01
64 50 0.69
65 21 0.29
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.31
Consensus pattern (65 bp):
AGTGCATCGATGCATGAAGTGTGCATCAATGCATAAAATGCATTCGATGTTTTCAATAAAACCTA
Found at i:841651 original size:15 final size:15
Alignment explanation
Indices: 841631--841659 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
841621 GAAATCAAGT
841631 TTGAAAATTACTCCC
1 TTGAAAATTACTCCC
841646 TTGAAAATTACTCC
1 TTGAAAATTACTCC
841660 TCCTTACTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.24, G:0.07, T:0.34
Consensus pattern (15 bp):
TTGAAAATTACTCCC
Found at i:844874 original size:25 final size:25
Alignment explanation
Indices: 844846--844900 Score: 101
Period size: 25 Copynumber: 2.2 Consensus size: 25
844836 TGTATCTAAA
*
844846 GATTCTCTTAACATCTAGTAAATGT
1 GATTCTCTTAACAGCTAGTAAATGT
844871 GATTCTCTTAACAGCTAGTAAATGT
1 GATTCTCTTAACAGCTAGTAAATGT
844896 GATTC
1 GATTC
844901 CTTGGGACAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (25 bp):
GATTCTCTTAACAGCTAGTAAATGT
Found at i:849533 original size:20 final size:21
Alignment explanation
Indices: 849508--849561 Score: 87
Period size: 20 Copynumber: 2.7 Consensus size: 21
849498 ATTTATTCAA
849508 TGGTGCATCGA-TGCATGGAT
1 TGGTGCATCGAGTGCATGGAT
849528 TGGTGCATC-AGTGCATGGAT
1 TGGTGCATCGAGTGCATGGAT
849548 TGGTGCATCG-GTGC
1 TGGTGCATCGAGTGC
849562 CTTCCTTTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.03
20 31 0.97
ACGTcount: A:0.17, C:0.17, G:0.37, T:0.30
Consensus pattern (21 bp):
TGGTGCATCGAGTGCATGGAT
Found at i:852543 original size:21 final size:20
Alignment explanation
Indices: 852515--852572 Score: 71
Period size: 21 Copynumber: 2.9 Consensus size: 20
852505 ATTTTTTTTA
852515 AAATATCAAACAAATTTGTT
1 AAATATCAAACAAATTTGTT
* * *
852535 AATTAATCAATCAAAATTGTT
1 AAAT-ATCAAACAAATTTGTT
*
852556 AAATATCAAATAAATTT
1 AAATATCAAACAAATTT
852573 AAATATCAAT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
20 13 0.43
21 17 0.57
ACGTcount: A:0.52, C:0.09, G:0.03, T:0.36
Consensus pattern (20 bp):
AAATATCAAACAAATTTGTT
Found at i:852669 original size:17 final size:17
Alignment explanation
Indices: 852634--852710 Score: 84
Period size: 17 Copynumber: 4.4 Consensus size: 17
852624 AGATTATAAA
852634 TTAAACAAAATATTTTTT
1 TTAAACAAAATA-TTTTT
*
852652 TTAAATAAAATA-TTTT
1 TTAAACAAAATATTTTT
*
852668 TTAAACAACAATAAATATTT
1 TTAAACAA-AAT--ATTTTT
*
852688 TTAAACACAATATTTTT
1 TTAAACAAAATATTTTT
852705 TTAAAC
1 TTAAAC
852711 GGAAATAACT
Statistics
Matches: 50, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
16 11 0.22
17 14 0.28
18 11 0.22
19 4 0.08
20 10 0.20
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (17 bp):
TTAAACAAAATATTTTT
Found at i:852680 original size:22 final size:20
Alignment explanation
Indices: 852655--852699 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
852645 ATTTTTTTTA
852655 AATAAAATATTTTTTAAACAAC
1 AATAAAATA-TTTTTAAAC-AC
852677 AAT-AAATATTTTTAAACAC
1 AATAAAATATTTTTAAACAC
852696 AATA
1 AATA
852700 TTTTTTTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 5 0.23
20 9 0.41
21 5 0.23
22 3 0.14
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.36
Consensus pattern (20 bp):
AATAAAATATTTTTAAACAC
Found at i:853179 original size:44 final size:44
Alignment explanation
Indices: 853089--853249 Score: 110
Period size: 44 Copynumber: 3.4 Consensus size: 44
853079 GTTTAAACAC
* * *
853089 ACTAACAAATTAATTAAATAATTTTTATACATATAATAACTTTA
1 ACTAACAAACTAATTAAATAATTTTTATAAATATAATAACTATA
* *
853133 ACTAAGAAACTAATTAACTAATTTTTTATATAATATAATATA-TAACTTAA
1 ACTAACAAACTAATTAAATAA-TTTTTATA-AATATAATA-ACT-A--T-A
* ** *
853183 ACTAACAAACTAATATAATATAACTTAAACTAACAAACTAATAATCTAT-
1 ACTAACAAACTAAT-TAA-ATAATTTTTA-TAA-ATA-TAATAA-CTATA
853232 ACTAACAAACTAATTAAA
1 ACTAACAAACTAATTAAA
853250 CCCTAACCCT
Statistics
Matches: 92, Mismatches: 11, Indels: 25
0.72 0.09 0.20
Matches are distributed among these distances:
44 18 0.20
45 8 0.09
46 9 0.10
47 2 0.02
48 3 0.03
49 15 0.16
50 14 0.15
51 8 0.09
52 8 0.09
53 6 0.07
54 1 0.01
ACGTcount: A:0.53, C:0.12, G:0.01, T:0.35
Consensus pattern (44 bp):
ACTAACAAACTAATTAAATAATTTTTATAAATATAATAACTATA
Found at i:853203 original size:28 final size:30
Alignment explanation
Indices: 853163--853225 Score: 112
Period size: 28 Copynumber: 2.2 Consensus size: 30
853153 ATTTTTTATA
853163 TAATATAATATATAACTTAAACTAACAAAC
1 TAATATAATATATAACTTAAACTAACAAAC
853193 TAATAT-A-ATATAACTTAAACTAACAAAC
1 TAATATAATATATAACTTAAACTAACAAAC
853221 TAATA
1 TAATA
853226 ATCTATACTA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
28 26 0.79
29 1 0.03
30 6 0.18
ACGTcount: A:0.57, C:0.13, G:0.00, T:0.30
Consensus pattern (30 bp):
TAATATAATATATAACTTAAACTAACAAAC
Found at i:853232 original size:28 final size:28
Alignment explanation
Indices: 853167--853232 Score: 107
Period size: 28 Copynumber: 2.4 Consensus size: 28
853157 TTTATATAAT
853167 ATAATATATAACTTAAACTAACAAACTA
1 ATAATATATAACTTAAACTAACAAACTA
853195 AT-ATAATATAACTTAAACTAACAAACTA
1 ATAAT-ATATAACTTAAACTAACAAACTA
*
853223 ATAATCTATA
1 ATAATATATA
853233 CTAACAAACT
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
27 2 0.06
28 31 0.89
29 2 0.06
ACGTcount: A:0.56, C:0.14, G:0.00, T:0.30
Consensus pattern (28 bp):
ATAATATATAACTTAAACTAACAAACTA
Found at i:854662 original size:60 final size:59
Alignment explanation
Indices: 854598--854710 Score: 147
Period size: 60 Copynumber: 1.9 Consensus size: 59
854588 TATAGGGTGC
* **
854598 TGCTTTATTAAGTACATC-GACTATTAAAAGTTACAAAATGGTCTTCCGACTATAAAGTGT
1 TGCTTTATTAAGT-C-TCTAACTATTAAAAGTTACAAAATGGTCACCCGACTATAAAGTGT
* *
854658 TGCTTTGTTGAGTCTCTTAACTATTAAAAGTTACAAAATGGTCACCCGACTAT
1 TGCTTTATTAAGTCTC-TAACTATTAAAAGTTACAAAATGGTCACCCGACTAT
854711 TCATTATGTT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
58 2 0.04
59 1 0.02
60 43 0.93
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (59 bp):
TGCTTTATTAAGTCTCTAACTATTAAAAGTTACAAAATGGTCACCCGACTATAAAGTGT
Found at i:858225 original size:29 final size:29
Alignment explanation
Indices: 858192--858248 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
858182 ATATGATTTT
*
858192 AAAAAAATTAAAAATTTAAGTATTAAACGG
1 AAAAAAA-TAAAAATTTAAGTACTAAACGG
* *
858222 AAAAAAATGATAATTTAAGTACTAAAC
1 AAAAAAATAAAAATTTAAGTACTAAAC
858249 ATAATTTACC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 17 0.71
30 7 0.29
ACGTcount: A:0.60, C:0.05, G:0.09, T:0.26
Consensus pattern (29 bp):
AAAAAAATAAAAATTTAAGTACTAAACGG
Found at i:863804 original size:70 final size:70
Alignment explanation
Indices: 863691--863830 Score: 280
Period size: 70 Copynumber: 2.0 Consensus size: 70
863681 AGTGTTTATA
863691 TTATTTCTTGGATCAAGTATCATTCACCATAAACCTGATCTCAAACCAAACGTATATTCTAAAAA
1 TTATTTCTTGGATCAAGTATCATTCACCATAAACCTGATCTCAAACCAAACGTATATTCTAAAAA
863756 ACTTG
66 ACTTG
863761 TTATTTCTTGGATCAAGTATCATTCACCATAAACCTGATCTCAAACCAAACGTATATTCTAAAAA
1 TTATTTCTTGGATCAAGTATCATTCACCATAAACCTGATCTCAAACCAAACGTATATTCTAAAAA
863826 ACTTG
66 ACTTG
863831 AACCGAATTA
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (70 bp):
TTATTTCTTGGATCAAGTATCATTCACCATAAACCTGATCTCAAACCAAACGTATATTCTAAAAA
ACTTG
Found at i:869612 original size:25 final size:25
Alignment explanation
Indices: 869578--869626 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
869568 GGCTGGAACA
869578 TTTAGGGTTTGAAACCCTAATCTGG
1 TTTAGGGTTTGAAACCCTAATCTGG
869603 TTTAGGGTTTGAAACCCTAATCTG
1 TTTAGGGTTTGAAACCCTAATCTG
869627 ATGGGTTGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.37
Consensus pattern (25 bp):
TTTAGGGTTTGAAACCCTAATCTGG
Found at i:869713 original size:16 final size:14
Alignment explanation
Indices: 869699--869751 Score: 74
Period size: 14 Copynumber: 3.9 Consensus size: 14
869689 TTGTAATATG
*
869699 TAATATTAATAATA
1 TAATAATAATAATA
869713 TAATAATAATAATA
1 TAATAATAATAATA
869727 -AATAATAATAATAA
1 TAATAATAATAAT-A
869741 TAATAA-AATAA
1 TAATAATAATAA
869752 CAATAAAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
13 12 0.33
14 19 0.53
15 5 0.14
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (14 bp):
TAATAATAATAATA
Found at i:869718 original size:3 final size:3
Alignment explanation
Indices: 869699--869757 Score: 77
Period size: 3 Copynumber: 20.0 Consensus size: 3
869689 TTGTAATATG
*
869699 TAA TAT TAA TAA T-A TAA TAA TAA TAA TAAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA
*
869744 TAA -AA TAA CAA TAA
1 TAA TAA TAA TAA TAA
869758 AAAACCCGGA
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
2 4 0.08
3 42 0.86
4 3 0.06
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:869969 original size:43 final size:44
Alignment explanation
Indices: 869908--870254 Score: 181
Period size: 43 Copynumber: 8.0 Consensus size: 44
869898 TGTTGGGGAC
* * * *
869908 GACACTGCTCATACGTGATGAAGAGTT-TGGGTCGTCTAAAGGT
1 GACACGGCTCCTACGTGATGAAGAGTTCTGGGCCATCTAAAGGT
*
869951 GACACGGCTCCTACGTGATGAAGAGTTCTTGGCCATCTAAAGGT
1 GACACGGCTCCTACGTGATGAAGAGTTCTGGGCCATCTAAAGGT
* * * * *** *
869995 GATAACACGGTTCCTACGTGACGAGGACG-GCT-GTTTATCT-ATGGTT
1 G---ACACGGCTCCTACGTGATGAAGA-GTTCTGGGCCATCTAAAGG-T
* * **
870041 GACACGGCTCCTACGTGATGAGGAGATCT-GG---TCT-GGGGAT
1 GACACGGCTCCTACGTGATGAAGAGTTCTGGGCCATCTAAAGG-T
*
870081 GACACGGCTCATACGTGATGAAGAGTTCT-GGCCATCTAAAGGT
1 GACACGGCTCCTACGTGATGAAGAGTTCTGGGCCATCTAAAGGT
* * * * ** *
870124 GATAACATGGTTCCTACGTGATGAGGACG-GCT-GGTTATCT-ATGGTT
1 G---ACACGGCTCCTACGTGATGAAGA-GTTCTGGGCCATCTAAAGG-T
* * ****
870170 GACACGGCTCCTACGTGATGAAGAGATCT-GGTC-GGGGAA--T
1 GACACGGCTCCTACGTGATGAAGAGTTCTGGGCCATCTAAAGGT
*
870210 GACACGGCTCATACGTGATGAAGAGTTCT-GGCCATCTAAAGGT
1 GACACGGCTCCTACGTGATGAAGAGTTCTGGGCCATCTAAAGGT
870253 GA
1 GA
870255 TAACACGGTT
Statistics
Matches: 234, Mismatches: 49, Indels: 42
0.72 0.15 0.13
Matches are distributed among these distances:
40 65 0.28
41 2 0.01
42 2 0.01
43 83 0.35
44 16 0.07
45 6 0.03
46 36 0.15
47 23 0.10
48 1 0.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (44 bp):
GACACGGCTCCTACGTGATGAAGAGTTCTGGGCCATCTAAAGGT
Found at i:870096 original size:40 final size:41
Alignment explanation
Indices: 870040--870240 Score: 167
Period size: 40 Copynumber: 4.8 Consensus size: 41
870030 TATCTATGGT
*
870040 TGACACGGCTCCTACGTGATGAGGAGATCTGG-TCTGGGGA
1 TGACACGGCTCCTACGTGATGAAGAGATCTGGATCTGGGGA
* * *
870080 TGACACGGCTCATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGA
1 TGACACGGCTCCTACGTGATGAAGAGATCTGG--ATCT---GGGGA
* * * * * ** *
870126 TAACATGGTTCCTACGTGATGAGGACG-GCTGGTTATCTATGGT
1 TGACACGGCTCCTACGTGATGAAGA-GATCTGG--ATCTGGGGA
870169 TGACACGGCTCCTACGTGATGAAGAGATCTGG-TC-GGGGAA
1 TGACACGGCTCCTACGTGATGAAGAGATCTGGATCTGGGG-A
* *
870209 TGACACGGCTCATACGTGATGAAGAGTTCTGG
1 TGACACGGCTCCTACGTGATGAAGAGATCTGG
870241 CCATCTAAAG
Statistics
Matches: 126, Mismatches: 26, Indels: 18
0.74 0.15 0.11
Matches are distributed among these distances:
39 2 0.02
40 61 0.48
42 1 0.01
43 29 0.23
46 32 0.25
47 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (41 bp):
TGACACGGCTCCTACGTGATGAAGAGATCTGGATCTGGGGA
Found at i:870142 original size:129 final size:129
Alignment explanation
Indices: 869950--870292 Score: 607
Period size: 129 Copynumber: 2.7 Consensus size: 129
869940 CGTCTAAAGG
*
869950 TGACACGGCTCCTACGTGATGAAGAGTTCTTGGCCATCTAAAGGTGATAACACGGTTCCTACGTG
1 TGACACGGCTCATACGTGATGAAGAGTTC-TGGCCATCTAAAGGTGATAACACGGTTCCTACGTG
* *
870015 ACGAGGACGGCTGTTTATCTATGGTTGACACGGCTCCTACGTGATGAGGAGATCTGGTCTGGGG-
65 ACGAGGACGGCTGGTTATCTATGGTTGACACGGCTCCTACGTGATGAAGAGATCTGGTC-GGGGA
870079 A
129 A
*
870080 TGACACGGCTCATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAACATGGTTCCTACGTGA
1 TGACACGGCTCATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAACACGGTTCCTACGTGA
*
870145 TGAGGACGGCTGGTTATCTATGGTTGACACGGCTCCTACGTGATGAAGAGATCTGGTCGGGGAA
66 CGAGGACGGCTGGTTATCTATGGTTGACACGGCTCCTACGTGATGAAGAGATCTGGTCGGGGAA
*
870209 TGACACGGCTCATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAACACGGTTCCTACATGA
1 TGACACGGCTCATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAACACGGTTCCTACGTGA
870274 CGAGGACGGCTGGTTATCT
66 CGAGGACGGCTGGTTATCT
870293 CTAGGATAAT
Statistics
Matches: 204, Mismatches: 8, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
128 4 0.02
129 172 0.84
130 28 0.14
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (129 bp):
TGACACGGCTCATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAACACGGTTCCTACGTGA
CGAGGACGGCTGGTTATCTATGGTTGACACGGCTCCTACGTGATGAAGAGATCTGGTCGGGGAA
Found at i:870164 original size:46 final size:46
Alignment explanation
Indices: 869952--870292 Score: 159
Period size: 46 Copynumber: 7.8 Consensus size: 46
869942 TCTAAAGGTG
* ** **
869952 ACACGGCTCCTACGTGATGAAGAGTTCTTGGCCATCTAAAGGTGATA
1 ACACGGCTCCTACGTGATGAGGAGAGC-TGGTTATCTAAAGGTGATA
* * * * *
869999 ACACGGTTCCTACGTGACGAGGACG-GCTGTTTATCT-ATGGT--TG
1 ACACGGCTCCTACGTGATGAGGA-GAGCTGGTTATCTAAAGGTGATA
* * *
870042 ACACGGCTCCTACGTGATGAGGAGATCTGG---TCT---GGGGATG
1 ACACGGCTCCTACGTGATGAGGAGAGCTGGTTATCTAAAGGTGATA
* * ** **
870082 ACACGGCTCATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATA
1 ACACGGCTCCTACGTGATGAGGAGAGCTGGTTATCTAAAGGTGATA
* * * *
870128 ACATGGTTCCTACGTGATGAGGACG-GCTGGTTATCT-ATGGT--TG
1 ACACGGCTCCTACGTGATGAGGA-GAGCTGGTTATCTAAAGGTGATA
* * * *
870171 ACACGGCTCCTACGTGATGAAGAGATCTGG---TC----GGGGAATG
1 ACACGGCTCCTACGTGATGAGGAGAGCTGGTTATCTAAAGGTG-ATA
* * ** **
870211 ACACGGCTCATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATA
1 ACACGGCTCCTACGTGATGAGGAGAGCTGGTTATCTAAAGGTGATA
* * *
870257 ACACGGTTCCTACATGACGAGGACG-GCTGGTTATCT
1 ACACGGCTCCTACGTGATGAGGA-GAGCTGGTTATCT
870293 CTAGGATAAT
Statistics
Matches: 226, Mismatches: 45, Indels: 47
0.71 0.14 0.15
Matches are distributed among these distances:
37 2 0.01
38 2 0.01
40 64 0.28
42 2 0.01
43 55 0.24
45 8 0.04
46 66 0.29
47 26 0.12
48 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (46 bp):
ACACGGCTCCTACGTGATGAGGAGAGCTGGTTATCTAAAGGTGATA
Done.