genome.fa.s7885.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007885.1 Hibiscus syriacus cultivar Beakdansim tig00110265_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75520

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4166--4236	26	2.7	26	80	10	72	32	19	21	26	1.97
4841--4902	30	2.1	30	84	0	79	30	6	32	30	1.83
5969--6011	21	2.2	20	87	8	61	60	6	4	27	1.43
6396--6425	13	2.3	13	100	0	60	60	0	0	40	0.97
7549--7621	2	36.5	2	94	0	128	47	0	2	49	1.15
10164--10236	31	2.3	32	88	2	103	20	17	32	28	1.96
16610--16651	21	2.0	21	95	0	75	45	14	16	23	1.84
25944--26065	24	5.0	23	81	10	127	23	25	26	24	2.00
26027--26061	17	2.1	17	100	0	70	25	28	22	22	1.99
25945--26044	11	8.6	11	72	10	74	24	24	27	25	2.00
26344--26395	21	2.5	21	87	0	77	48	30	0	21	1.51
26344--26447	7	14.9	7	68	11	61	45	32	0	22	1.53
26358--26440	35	2.4	34	84	9	114	44	31	0	24	1.54
26342--26433	28	3.3	26	74	15	78	44	31	0	23	1.54
26574--26622	25	2.0	24	88	11	73	44	4	8	42	1.53
27186--27243	2	29.5	2	96	3	109	50	0	0	50	1.00
27486--27526	2	20.5	2	100	0	82	48	0	0	51	1.00
29154--29194	22	1.9	21	90	5	64	24	2	2	70	1.11
29926--29977	21	2.5	21	81	3	61	38	19	25	17	1.93
29966--30077	20	5.7	20	81	6	111	33	25	16	25	1.95
30668--30852	19	10.1	19	75	14	165	12	22	21	43	1.86
30668--30852	33	5.1	38	78	12	156	12	22	21	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30795--30852	20	2.9	20	80	10	64	13	24	18	43	1.87
32840--32962	42	2.9	42	80	2	122	22	36	17	22	1.95
32896--32962	21	3.2	21	66	6	55	23	35	20	19	1.95
34318--34353	14	2.6	14	95	0	63	30	0	25	44	1.54
34537--34663	33	3.9	32	85	8	184	15	22	18	42	1.89
34530--34662	66	2.0	66	95	0	239	17	22	18	41	1.90
36950--36974	12	2.1	12	100	0	50	0	28	0	72	0.86
37149--37202	24	2.2	24	90	0	81	38	20	16	24	1.92
38263--38318	20	2.8	20	91	0	85	39	23	23	14	1.91
38342--38398	14	3.8	14	71	24	53	8	21	21	49	1.76
38337--38451	19	6.6	19	78	17	126	12	22	20	45	1.84
38337--38450	32	3.3	33	86	8	140	12	22	20	44	1.84
40438--40504	19	3.5	19	83	4	89	37	23	23	14	1.93
40493--40550	14	3.9	14	79	16	71	48	25	17	8	1.75
40477--40555	32	2.4	33	95	2	142	46	24	18	10	1.80
40562--40657	14	5.7	18	70	21	73	11	19	21	46	1.81
40567--40657	32	2.8	33	93	3	157	10	18	21	48	1.79
40642--40695	20	2.8	19	86	5	72	16	24	24	35	1.95
40630--40695	19	3.4	19	81	4	78	15	22	24	37	1.92
41173--41212	18	2.2	18	86	0	53	12	15	47	25	1.80
42531--42568	20	1.9	20	88	0	58	50	21	15	13	1.78
42832--42875	22	2.0	22	95	0	79	18	15	45	20	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43082--43159	41	1.9	41	89	0	120	23	15	23	38	1.92
43063--43156	20	4.7	20	80	7	91	24	17	25	32	1.96
43082--43177	41	2.3	41	82	3	113	21	18	22	36	1.95
43125--43258	62	2.2	62	86	4	191	17	23	19	38	1.93
43164--43258	41	2.3	41	96	0	172	15	24	18	41	1.90
43145--43243	21	4.8	21	86	2	146	15	26	18	40	1.89
43144--43273	62	2.1	62	82	2	163	19	23	19	37	1.94
45615--45661	23	1.9	25	83	12	62	44	19	2	34	1.62
46281--46352	33	2.2	33	80	12	76	31	4	8	55	1.49
54288--54331	3	14.7	3	90	0	70	65	4	0	29	1.12
61627--61712	43	2.0	43	86	0	118	27	23	9	39	1.85
66862--66892	16	1.9	16	93	0	53	41	12	12	32	1.81
71953--72027	21	3.6	21	76	3	89	40	17	25	17	1.91
71936--72027	41	2.3	40	94	1	166	39	17	25	18	1.92
71954--72088	41	3.3	41	81	6	123	37	20	21	20	1.94
72016--72130	20	5.7	20	82	6	115	31	26	18	24	1.97
72013--72150	41	3.4	41	79	6	154	34	24	17	23	1.96
72620--72657	20	1.9	20	88	0	58	13	15	21	50	1.78
73940--73985	18	2.6	18	89	0	74	28	43	15	13	1.83
74503--74560	14	3.9	14	79	16	71	48	25	17	8	1.75
74487--74581	18	5.7	16	74	20	72	46	23	18	11	1.82
74487--74576	32	2.8	32	94	1	153	47	23	17	11	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74593--74650	14	3.9	14	79	16	62	10	17	24	48	1.78
74588--74707	32	3.6	32	78	17	127	12	20	22	45	1.84
74639--74703	19	3.5	19	79	10	71	13	23	23	40	1.90

Tables:   1

The End!