Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007886.1 Hibiscus syriacus cultivar Beakdansim tig00110266_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1254954
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 5 of 7
Found at i:745255 original size:27 final size:27
Alignment explanation
Indices: 745220--745272 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
745210 TTGTGTTTCG
745220 CGTTGCGATTTTGTCGTTGCGATTTTT
1 CGTTGCGATTTTGTCGTTGCGATTTTT
745247 CGTTGCGATTTTGTCGTTGCGATTTT
1 CGTTGCGATTTTGTCGTTGCGATTTT
745273 CATTTCGCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.08, C:0.15, G:0.26, T:0.51
Consensus pattern (27 bp):
CGTTGCGATTTTGTCGTTGCGATTTTT
Found at i:745287 original size:19 final size:19
Alignment explanation
Indices: 745261--745325 Score: 87
Period size: 19 Copynumber: 3.5 Consensus size: 19
745251 GCGATTTTGT
**
745261 CGTTGCGATTTTCATTTCG
1 CGTTGCGATAGTCATTTCG
* *
745280 CATTGCGATAGCCATTTC-
1 CGTTGCGATAGTCATTTCG
745298 CGTTGCGATAGTCATTTCG
1 CGTTGCGATAGTCATTTCG
745317 CGTTGCGAT
1 CGTTGCGAT
745326 TTTAAGTTTC
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
18 16 0.41
19 23 0.59
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.38
Consensus pattern (19 bp):
CGTTGCGATAGTCATTTCG
Found at i:745305 original size:18 final size:19
Alignment explanation
Indices: 745273--745325 Score: 81
Period size: 18 Copynumber: 2.8 Consensus size: 19
745263 TTGCGATTTT
*
745273 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
745292 CATTTC-CGTTGCGATAGT
1 CATTTCGCGTTGCGATAGC
745310 CATTTCGCGTTGCGAT
1 CATTTCGCGTTGCGAT
745326 TTTAAGTTTC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
18 16 0.52
19 15 0.48
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:747302 original size:19 final size:19
Alignment explanation
Indices: 747275--747444 Score: 225
Period size: 19 Copynumber: 9.5 Consensus size: 19
747265 TAGTTAATTT
* *
747275 GCAACGCGAAATGGAAATC
1 GCAATGCGAAATGAAAATC
*
747294 GCAATGCGAAATGAAAATT
1 GCAATGCGAAATGAAAATC
747313 GCAATGCGAAATGAAAATC
1 GCAATGCGAAATGAAAATC
747332 GCAATGCGAAATGAAAATC
1 GCAATGCGAAATGAAAATC
* *
747351 GTAATACGAAATGAAAATC
1 GCAATGCGAAATGAAAATC
747370 GCAA--CG--A-GAAAATC
1 GCAATGCGAAATGAAAATC
747384 GCAATGCGAAATGAAAATC
1 GCAATGCGAAATGAAAATC
747403 GCAATGCGAAATGAAAATC
1 GCAATGCGAAATGAAAATC
747422 GCAA--CG--A-GAAAATC
1 GCAATGCGAAATGAAAATC
747436 GCAATGCGA
1 GCAATGCGA
747445 TTTTCATTTC
Statistics
Matches: 136, Mismatches: 7, Indels: 18
0.84 0.04 0.11
Matches are distributed among these distances:
14 22 0.16
15 2 0.01
16 4 0.03
17 4 0.03
18 1 0.01
19 103 0.76
ACGTcount: A:0.47, C:0.16, G:0.22, T:0.15
Consensus pattern (19 bp):
GCAATGCGAAATGAAAATC
Found at i:747463 original size:52 final size:52
Alignment explanation
Indices: 747275--747444 Score: 250
Period size: 52 Copynumber: 3.2 Consensus size: 52
747265 TAGTTAATTT
* * *
747275 GCAACGCGAAATGGAAATCGCAATGCGAAATGAAAATTGCAATGCGAAATGAAAATC
1 GCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA--CG--A-GAAAATC
* *
747332 GCAATGCGAAATGAAAATCGTAATACGAAATGAAAATCGCAACGAGAAAATC
1 GCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAAAATC
747384 GCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAAAATC
1 GCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAAAATC
747436 GCAATGCGA
1 GCAATGCGA
747445 TTTTCATTTC
Statistics
Matches: 106, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
52 66 0.62
53 1 0.01
55 2 0.02
57 37 0.35
ACGTcount: A:0.47, C:0.16, G:0.22, T:0.15
Consensus pattern (52 bp):
GCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAAAATC
Found at i:747520 original size:20 final size:20
Alignment explanation
Indices: 747463--747520 Score: 98
Period size: 20 Copynumber: 2.9 Consensus size: 20
747453 TCGCATTGCG
* *
747463 ATTTTCTCGTTGCGATAACC
1 ATTTTCGCGTTGCGATAGCC
747483 ATTTTCGCGTTGCGATAGCC
1 ATTTTCGCGTTGCGATAGCC
747503 ATTTTCGCGTTGCGATAG
1 ATTTTCGCGTTGCGATAG
747521 TCAAATGAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.38
Consensus pattern (20 bp):
ATTTTCGCGTTGCGATAGCC
Found at i:748579 original size:24 final size:24
Alignment explanation
Indices: 748552--748598 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
748542 AGTCAGTATT
*
748552 CGAAATTTGATCTTGGTCAATACC
1 CGAAATTTGATATTGGTCAATACC
*
748576 CGAACTTTGATATTGGTCAATAC
1 CGAAATTTGATATTGGTCAATAC
748599 ACGGATTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (24 bp):
CGAAATTTGATATTGGTCAATACC
Found at i:748608 original size:24 final size:24
Alignment explanation
Indices: 748552--748610 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
748542 AGTCAGTATT
* * *
748552 CGAAATTTGATCTTGGTCAATACC
1 CGAACTTTGATATTGGTCAATACA
748576 CGAACTTTGATATTGGTCAATACA
1 CGAACTTTGATATTGGTCAATACA
* *
748600 CGGATTTTGAT
1 CGAACTTTGAT
748611 GATGTTTCAG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.36
Consensus pattern (24 bp):
CGAACTTTGATATTGGTCAATACA
Found at i:748802 original size:12 final size:12
Alignment explanation
Indices: 748785--748809 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
748775 ATATAATCCT
748785 GAAGAAGAAAAA
1 GAAGAAGAAAAA
748797 GAAGAAGAAAAA
1 GAAGAAGAAAAA
748809 G
1 G
748810 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:751099 original size:19 final size:19
Alignment explanation
Indices: 751077--751174 Score: 90
Period size: 19 Copynumber: 5.7 Consensus size: 19
751067 CTTAATGTCC
751077 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
751096 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
751110 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
**
751129 ATCGCAA--CG--A-GGGA
1 ATCGCAATGCGAAATGAAA
751143 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
751162 ATCGCAACGCGAA
1 ATCGCAATGCGAA
751175 TTTAATTTCG
Statistics
Matches: 62, Mismatches: 7, Indels: 20
0.70 0.08 0.22
Matches are distributed among these distances:
14 19 0.31
15 2 0.03
16 4 0.06
17 4 0.06
18 2 0.03
19 31 0.50
ACGTcount: A:0.44, C:0.19, G:0.24, T:0.12
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:751119 original size:33 final size:33
Alignment explanation
Indices: 751077--751170 Score: 179
Period size: 33 Copynumber: 2.8 Consensus size: 33
751067 CTTAATGTCC
751077 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
751110 ATCGCAATGCGAAATGAAAATCGCAACGAGGGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
751143 ATCGCAATGCGAAATGAAAATCGCAACG
1 ATCGCAATGCGAAATGAAAATCGCAACG
751171 CGAATTTAAT
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 60 1.00
ACGTcount: A:0.44, C:0.19, G:0.24, T:0.13
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:751192 original size:19 final size:20
Alignment explanation
Indices: 751170--751212 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
751160 AAATCGCAAC
751170 GCGAATTT-AATTTCGCGTT
1 GCGAATTTCAATTTCGCGTT
* *
751189 GCGATTTTCATTTTCGCGTT
1 GCGAATTTCAATTTCGCGTT
751209 GCGA
1 GCGA
751213 TTCTCTCGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.16, C:0.19, G:0.23, T:0.42
Consensus pattern (20 bp):
GCGAATTTCAATTTCGCGTT
Found at i:751197 original size:14 final size:14
Alignment explanation
Indices: 751198--751231 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
751188 TGCGATTTTC
751198 ATTTTCGCGTTGCG
1 ATTTTCGCGTTGCG
* *
751212 ATTCTCTCGTTGCG
1 ATTTTCGCGTTGCG
751226 ATTTTC
1 ATTTTC
751232 ATTTCGAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.09, C:0.24, G:0.21, T:0.47
Consensus pattern (14 bp):
ATTTTCGCGTTGCG
Found at i:751373 original size:14 final size:14
Alignment explanation
Indices: 751354--751390 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
751344 CATCAATTAA
751354 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
751368 ACAAATCACCTTTT
1 ACAAATCAACTTTT
751382 ACAAATCAA
1 ACAAATCAA
751391 TTAAACAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:752813 original size:21 final size:21
Alignment explanation
Indices: 752747--752813 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
752737 GTGAATCGGG
*
752747 CTCTTGAATGGTGGGA-GGGA
1 CTCTTGAACGGTGGGAGGGGA
* * ** * *
752767 CCTCTTCAACGATGACAGTGGC
1 -CTCTTGAACGGTGGGAGGGGA
752789 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAACGGTGGGAGGGGA
752810 CTCT
1 CTCT
752814 CGAGGAATGA
Statistics
Matches: 32, Mismatches: 13, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
21 30 0.94
22 2 0.06
ACGTcount: A:0.19, C:0.21, G:0.36, T:0.24
Consensus pattern (21 bp):
CTCTTGAACGGTGGGAGGGGA
Found at i:752832 original size:42 final size:41
Alignment explanation
Indices: 752747--752869 Score: 113
Period size: 42 Copynumber: 2.9 Consensus size: 41
752737 GTGAATCGGG
* * * * *
752747 CTCTTGAATGGTGGGA-GGGACCTCTTCAACGATGACAGTGGC
1 CTCTTGAACGGTGGGAGGGGA-CTC-TCGAGGATGATAGGGGC
752789 CTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGC
1 CTCTTGAACGGTGGGAGGGGACTCTCGAGG-ATGATAGGGGC
* * * * *
752831 CTCTTCAACGATAGGAGTGGACTCTTGAGGGATGATAGG
1 CTCTTGAACGGTGGGAGGGGACTCTCGA-GGATGATAGG
752870 CGAGTCGGGC
Statistics
Matches: 68, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
41 4 0.06
42 58 0.85
43 6 0.09
ACGTcount: A:0.23, C:0.18, G:0.37, T:0.23
Consensus pattern (41 bp):
CTCTTGAACGGTGGGAGGGGACTCTCGAGGATGATAGGGGC
Found at i:754915 original size:39 final size:37
Alignment explanation
Indices: 754872--754998 Score: 118
Period size: 39 Copynumber: 3.4 Consensus size: 37
754862 TCTTTTGGTT
*
754872 GAAATGAAAATCGCAACGAGATAATGAGAATCGCAACGC
1 GAAATGAAAATCGCAACG-GA-AATGAAAATCGCAACGC
** * * * *
754911 GAAATGACTATCGCGAC---CA-GACAATCGCAACAC
1 GAAATGAAAATCGCAACGGAAATGAAAATCGCAACGC
*
754944 GAAATGAAAATCGCAACCGCGAAATAAAAATCGCAACGC
1 GAAATGAAAATCGCAA-CG-GAAATGAAAATCGCAACGC
754983 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
754999 TGCGATTTTG
Statistics
Matches: 69, Mismatches: 13, Indels: 12
0.73 0.14 0.13
Matches are distributed among these distances:
33 25 0.36
34 2 0.03
38 1 0.01
39 41 0.59
ACGTcount: A:0.46, C:0.22, G:0.20, T:0.12
Consensus pattern (37 bp):
GAAATGAAAATCGCAACGGAAATGAAAATCGCAACGC
Found at i:754923 original size:19 final size:19
Alignment explanation
Indices: 754872--755003 Score: 130
Period size: 19 Copynumber: 7.1 Consensus size: 19
754862 TCTTTTGGTT
*
754872 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
*
754891 GATAATGAGAATCGCAACGC
1 GA-AATGAAAATCGCAACGC
** *
754911 GAAATGACTATCGCGAC-C
1 GAAATGAAAATCGCAACGC
* *
754929 ---A-GACAATCGCAACAC
1 GAAATGAAAATCGCAACGC
754944 GAAATGAAAATCGCAACCGC
1 GAAATGAAAATCGCAA-CGC
*
754964 GAAATAAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
754983 GAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGC
755002 GA
1 GA
755004 TTTTGGTTTC
Statistics
Matches: 94, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
14 10 0.11
15 2 0.02
18 2 0.02
19 46 0.49
20 34 0.36
ACGTcount: A:0.45, C:0.22, G:0.20, T:0.12
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:755015 original size:19 final size:19
Alignment explanation
Indices: 754999--755084 Score: 111
Period size: 19 Copynumber: 4.5 Consensus size: 19
754989 AAAATCGCAA
*
754999 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGATTTCGCGT
*
755018 TGCGATTTTTATTTCGCGT
1 TGCGATTTTGATTTCGCGT
*
755037 TGCGATTTTTATTTCGCGT
1 TGCGATTTTGATTTCGCGT
*
755056 TGCGATAGTT-ATTTCCGCGT
1 TGCGAT-TTTGATTT-CGCGT
755076 TGCGATTTT
1 TGCGATTTT
755085 CATTCTCGAA
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
19 48 0.79
20 13 0.21
ACGTcount: A:0.10, C:0.16, G:0.24, T:0.49
Consensus pattern (19 bp):
TGCGATTTTGATTTCGCGT
Found at i:755052 original size:38 final size:39
Alignment explanation
Indices: 754999--755084 Score: 129
Period size: 38 Copynumber: 2.2 Consensus size: 39
754989 AAAATCGCAA
* **
754999 TGCGATTTTGGTTTCGCGTTGCGATTTTTATTT-CGCGT
1 TGCGATTTTGATTTCGCGTTGCGATAGTTATTTCCGCGT
*
755037 TGCGATTTTTATTTCGCGTTGCGATAGTTATTTCCGCGT
1 TGCGATTTTGATTTCGCGTTGCGATAGTTATTTCCGCGT
755076 TGCGATTTT
1 TGCGATTTT
755085 CATTCTCGAA
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
38 29 0.67
39 14 0.33
ACGTcount: A:0.10, C:0.16, G:0.24, T:0.49
Consensus pattern (39 bp):
TGCGATTTTGATTTCGCGTTGCGATAGTTATTTCCGCGT
Found at i:755674 original size:41 final size:41
Alignment explanation
Indices: 755622--755699 Score: 120
Period size: 41 Copynumber: 1.9 Consensus size: 41
755612 CGAAAGTCAG
* * *
755622 TATCGCGTTGCGAAAGTAAGTATCTCGTTGCGATTTTGTAT
1 TATCGCATTGCGAAAGTAAGTATCGCATTGCGATTTTGTAT
*
755663 TATCGCATTGCGATAGTAAGTATCGCATTGCGATTTT
1 TATCGCATTGCGAAAGTAAGTATCGCATTGCGATTTT
755700 CCCAATTCGC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.38
Consensus pattern (41 bp):
TATCGCATTGCGAAAGTAAGTATCGCATTGCGATTTTGTAT
Found at i:755696 original size:20 final size:20
Alignment explanation
Indices: 755603--755696 Score: 91
Period size: 20 Copynumber: 4.7 Consensus size: 20
755593 GATTATGTAA
* *
755603 ATCGCGTTGCGAAAGTCAGT
1 ATCGCGTTGCGATAGTAAGT
*
755623 ATCGCGTTGCGAAAGTAAGT
1 ATCGCGTTGCGATAGTAAGT
* * *
755643 ATCTCGTTGCGATTTTGT-ATT
1 ATCGCGTTGCGA--TAGTAAGT
*
755664 ATCGCATTGCGATAGTAAGT
1 ATCGCGTTGCGATAGTAAGT
*
755684 ATCGCATTGCGAT
1 ATCGCGTTGCGAT
755697 TTTCCCAATT
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
19 3 0.05
20 45 0.73
21 12 0.19
22 2 0.03
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (20 bp):
ATCGCGTTGCGATAGTAAGT
Found at i:755715 original size:41 final size:41
Alignment explanation
Indices: 755622--755739 Score: 114
Period size: 41 Copynumber: 2.9 Consensus size: 41
755612 CGAAAGTCAG
* * * ** *
755622 TATCGCGTTGCGAAAGTAAGTATCTCGTTGCGATTTTGTAT
1 TATCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCAA
*
755663 TATCGCATTGCGATAGTAAGTATCGCATTGCGATTTTCCCAA
1 TATCGCGTTGCGATAGTAAGTATCGCATTGCGATTTT-CCAA
* **
755705 T-TCGCGTTGCGAT-TTACTTATTCGCATTGCGATTT
1 TATCGCGTTGCGATAGTAAGTA-TCGCATTGCGATTT
755740 ACTTATTCGC
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
40 4 0.06
41 58 0.91
42 2 0.03
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.39
Consensus pattern (41 bp):
TATCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCAA
Found at i:755729 original size:20 final size:20
Alignment explanation
Indices: 755685--755797 Score: 136
Period size: 20 Copynumber: 5.5 Consensus size: 20
755675 ATAGTAAGTA
* **
755685 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGA-TTTACTTAT
*
755706 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTTAT
755726 TCGCATTGCGATTTACTTAT
1 TCGCATTGCGATTTACTTAT
* **
755746 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGA-TTTACTTAT
*
755767 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTTAT
755787 TCGCATTGCGA
1 TCGCATTGCGA
755798 ATTGGGAAAA
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
20 52 0.67
21 26 0.33
ACGTcount: A:0.18, C:0.24, G:0.18, T:0.41
Consensus pattern (20 bp):
TCGCATTGCGATTTACTTAT
Found at i:755730 original size:61 final size:61
Alignment explanation
Indices: 755665--755797 Score: 223
Period size: 61 Copynumber: 2.2 Consensus size: 61
755655 TTTTGTATTA
755665 TCGCATTGCGATAGTAAGTA-TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGAT-GTAAGTATTCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
* **
755726 TCGCATTGCGATTTACTTATTCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATGTAAGTATTCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
755787 TCGCATTGCGA
1 TCGCATTGCGA
755798 ATTGGGAAAA
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
60 4 0.06
61 64 0.94
ACGTcount: A:0.20, C:0.23, G:0.19, T:0.39
Consensus pattern (61 bp):
TCGCATTGCGATGTAAGTATTCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
Found at i:757001 original size:12 final size:12
Alignment explanation
Indices: 756978--757025 Score: 78
Period size: 12 Copynumber: 4.0 Consensus size: 12
756968 TCACGAACAA
756978 TATCAACTCGTT
1 TATCAACTCGTT
* *
756990 TATGAGCTCGTT
1 TATCAACTCGTT
757002 TATCAACTCGTT
1 TATCAACTCGTT
757014 TATCAACTCGTT
1 TATCAACTCGTT
757026 CATTTATGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.23, C:0.23, G:0.12, T:0.42
Consensus pattern (12 bp):
TATCAACTCGTT
Found at i:757264 original size:11 final size:11
Alignment explanation
Indices: 757241--757310 Score: 52
Period size: 11 Copynumber: 6.5 Consensus size: 11
757231 AAACGAATGA
*
757241 TAAACAAA-AC
1 TAAACAAACGC
*
757251 TAAAAAAACGC
1 TAAACAAACGC
* *
757262 TAAACAATCAC
1 TAAACAAACGC
**
757273 TAAATGAACGC
1 TAAACAAACGC
*
757284 TAAACAAACAC
1 TAAACAAACGC
**
757295 TAAATGAACGC
1 TAAACAAACGC
757306 TAAAC
1 TAAAC
757311 GAACATGTTC
Statistics
Matches: 43, Mismatches: 16, Indels: 1
0.72 0.27 0.02
Matches are distributed among these distances:
10 7 0.16
11 36 0.84
ACGTcount: A:0.57, C:0.21, G:0.07, T:0.14
Consensus pattern (11 bp):
TAAACAAACGC
Found at i:757282 original size:22 final size:22
Alignment explanation
Indices: 757241--757315 Score: 107
Period size: 22 Copynumber: 3.5 Consensus size: 22
757231 AAACGAATGA
**
757241 TAAACAAA-ACTAAAAAAACGC
1 TAAACAAACACTAAATGAACGC
*
757262 TAAACAATCACTAAATGAACGC
1 TAAACAAACACTAAATGAACGC
757284 TAAACAAACACTAAATGAACGC
1 TAAACAAACACTAAATGAACGC
*
757306 TAAACGAACA
1 TAAACAAACA
757316 TGTTCTTGAA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
21 7 0.15
22 41 0.85
ACGTcount: A:0.57, C:0.21, G:0.08, T:0.13
Consensus pattern (22 bp):
TAAACAAACACTAAATGAACGC
Found at i:757314 original size:11 final size:11
Alignment explanation
Indices: 757257--757314 Score: 55
Period size: 11 Copynumber: 5.3 Consensus size: 11
757247 AAACTAAAAA
757257 AACGCTAAAC-
1 AACGCTAAACG
* *
757267 AATCACTAAATG
1 AA-CGCTAAACG
*
757279 AACGCTAAACA
1 AACGCTAAACG
* *
757290 AACACTAAATG
1 AACGCTAAACG
757301 AACGCTAAACG
1 AACGCTAAACG
757312 AAC
1 AAC
757315 ATGTTCTTGA
Statistics
Matches: 36, Mismatches: 10, Indels: 3
0.73 0.20 0.06
Matches are distributed among these distances:
10 2 0.06
11 32 0.89
12 2 0.06
ACGTcount: A:0.52, C:0.24, G:0.10, T:0.14
Consensus pattern (11 bp):
AACGCTAAACG
Found at i:764484 original size:21 final size:21
Alignment explanation
Indices: 764466--764594 Score: 158
Period size: 21 Copynumber: 6.2 Consensus size: 21
764456 ATTCGCAACA
764466 CGAACTTCGACTATCGCAATG
1 CGAACTTCGACTATCGCAATG
*
764487 CGAA-TAT-GTA-AATCGCAATG
1 CGAACT-TCG-ACTATCGCAATG
*
764507 CGATA-GTCGACTATCGCAATG
1 CGA-ACTTCGACTATCGCAATG
* *
764528 CGAACTTGGACTATCGCAACG
1 CGAACTTCGACTATCGCAATG
764549 CGAACTTCGACTATCGCAATG
1 CGAACTTCGACTATCGCAATG
*
764570 CGAACTTGGACTATCGCAATG
1 CGAACTTCGACTATCGCAATG
764591 CGAA
1 CGAA
764595 TATGTAAATC
Statistics
Matches: 93, Mismatches: 9, Indels: 12
0.82 0.08 0.11
Matches are distributed among these distances:
20 17 0.18
21 76 0.82
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.22
Consensus pattern (21 bp):
CGAACTTCGACTATCGCAATG
Found at i:764503 original size:20 final size:21
Alignment explanation
Indices: 764475--764633 Score: 147
Period size: 21 Copynumber: 7.7 Consensus size: 21
764465 ACGAACTTCG
764475 ACTATCGCAATGCGAATATGT
1 ACTATCGCAATGCGAATATGT
*
764496 A-AATCGCAATGCG-ATA-GT
1 ACTATCGCAATGCGAATATGT
*
764514 CGACTATCGCAATGCGAACT-TGG
1 --ACTATCGCAATGCGAA-TATGT
*
764537 ACTATCGCAACGCGAACT-TCG-
1 ACTATCGCAATGCGAA-TAT-GT
*
764558 ACTATCGCAATGCGAACT-TGG
1 ACTATCGCAATGCGAA-TATGT
764579 ACTATCGCAATGCGAATATGT
1 ACTATCGCAATGCGAATATGT
*
764600 A-AATCGCAATGCGAATATGT
1 ACTATCGCAATGCGAATATGT
*
764620 A-AATCGCAATGCGA
1 ACTATCGCAATGCGA
764634 TAGTCGAAGT
Statistics
Matches: 122, Mismatches: 7, Indels: 19
0.82 0.05 0.13
Matches are distributed among these distances:
18 2 0.02
19 3 0.02
20 46 0.38
21 67 0.55
22 2 0.02
23 2 0.02
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.23
Consensus pattern (21 bp):
ACTATCGCAATGCGAATATGT
Found at i:764559 original size:42 final size:42
Alignment explanation
Indices: 764458--764594 Score: 181
Period size: 42 Copynumber: 3.3 Consensus size: 42
764448 AGTTTCAGAT
* * *
764458 TCGCAACACGAACTTCGACTATCGCAATGCGAA-TATGTA-AA
1 TCGCAACGCGAACTTCGACTATCGCAATGCGAACT-TGGACTA
* *
764499 TCGCAATGCGATA-GTCGACTATCGCAATGCGAACTTGGACTA
1 TCGCAACGCGA-ACTTCGACTATCGCAATGCGAACTTGGACTA
764541 TCGCAACGCGAACTTCGACTATCGCAATGCGAACTTGGACTA
1 TCGCAACGCGAACTTCGACTATCGCAATGCGAACTTGGACTA
*
764583 TCGCAATGCGAA
1 TCGCAACGCGAA
764595 TATGTAAATC
Statistics
Matches: 84, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
41 32 0.38
42 52 0.62
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.22
Consensus pattern (42 bp):
TCGCAACGCGAACTTCGACTATCGCAATGCGAACTTGGACTA
Found at i:765427 original size:21 final size:21
Alignment explanation
Indices: 765403--765539 Score: 138
Period size: 21 Copynumber: 6.6 Consensus size: 21
765393 TTTGGAATAA
*
765403 ATCGCAACGCGAACTTCGACT
1 ATCGCAATGCGAACTTCGACT
*
765424 ATCGCAATGCGAACTTAGACT
1 ATCGCAATGCGAACTTCGACT
*
765445 ATCGCAATGCGAA-TAT-GTA-A
1 ATCGCAATGCGAACT-TCG-ACT
*
765465 ATCGCAATGCGATA-GTCGACT
1 ATCGCAATGCGA-ACTTCGACT
*
765486 ATCGCAATGCGAACTTGGACT
1 ATCGCAATGCGAACTTCGACT
* *
765507 ATCGCAACGCGAACTTTGACT
1 ATCGCAATGCGAACTTCGACT
* *
765528 ATTGCATTGCGA
1 ATCGCAATGCGA
765540 TTTACATATT
Statistics
Matches: 98, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
20 17 0.17
21 81 0.83
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (21 bp):
ATCGCAATGCGAACTTCGACT
Found at i:765485 original size:62 final size:62
Alignment explanation
Indices: 765400--765519 Score: 188
Period size: 62 Copynumber: 1.9 Consensus size: 62
765390 GAATTTGGAA
* *
765400 TAAATCGCAACGCGAACTTCGACTATCGCAATGCGAACTTAGACTATCGCAATGCGAATATG
1 TAAATCGCAACGCGAACGTCGACTATCGCAATGCGAACTTAGACTATCGCAACGCGAATATG
* *
765462 TAAATCGCAATGCGATA-GTCGACTATCGCAATGCGAACTTGGACTATCGCAACGCGAA
1 TAAATCGCAACGCGA-ACGTCGACTATCGCAATGCGAACTTAGACTATCGCAACGCGAA
765520 CTTTGACTAT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
62 52 0.98
63 1 0.02
ACGTcount: A:0.33, C:0.24, G:0.21, T:0.22
Consensus pattern (62 bp):
TAAATCGCAACGCGAACGTCGACTATCGCAATGCGAACTTAGACTATCGCAACGCGAATATG
Found at i:765556 original size:20 final size:20
Alignment explanation
Indices: 765527--765581 Score: 94
Period size: 20 Copynumber: 2.8 Consensus size: 20
765517 GAACTTTGAC
*
765527 TATT-GCATTGCGATTTACA
1 TATTCGCATTGCGATATACA
765546 TATTCGCATTGCGATATACA
1 TATTCGCATTGCGATATACA
765566 TATTCGCATTGCGATA
1 TATTCGCATTGCGATA
765582 GTCGAAGTTC
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
19 4 0.12
20 30 0.88
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.38
Consensus pattern (20 bp):
TATTCGCATTGCGATATACA
Found at i:772375 original size:38 final size:38
Alignment explanation
Indices: 772330--772434 Score: 192
Period size: 38 Copynumber: 2.8 Consensus size: 38
772320 ATAATTTTAT
* *
772330 TTTAATGATGCTTTGGCGTATTCTTGTTTGTAATAATA
1 TTTAATGATGCTTTGGTGCATTCTTGTTTGTAATAATA
772368 TTTAATGATGCTTTGGTGCATTCTTGTTTGTAATAATA
1 TTTAATGATGCTTTGGTGCATTCTTGTTTGTAATAATA
772406 TTTAATGATGCTTTGGTGCATTCTTGTTT
1 TTTAATGATGCTTTGGTGCATTCTTGTTT
772435 ATATTCTTAT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 65 1.00
ACGTcount: A:0.21, C:0.09, G:0.19, T:0.51
Consensus pattern (38 bp):
TTTAATGATGCTTTGGTGCATTCTTGTTTGTAATAATA
Found at i:772752 original size:26 final size:26
Alignment explanation
Indices: 772723--772776 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
772713 ATTTGTCTTA
772723 TAATGAAATT-TTTAATAATTATATTT
1 TAATGAAATTATTTAATAATTAT-TTT
** *
772749 TAATTTAATTATTTAATATTTATTTT
1 TAATGAAATTATTTAATAATTATTTT
772775 TA
1 TA
772777 TCTCTATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 13 0.54
27 11 0.46
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (26 bp):
TAATGAAATTATTTAATAATTATTTT
Found at i:773062 original size:31 final size:31
Alignment explanation
Indices: 773027--773096 Score: 95
Period size: 31 Copynumber: 2.3 Consensus size: 31
773017 AAGTTTCAAA
* * * *
773027 AAAATTATCATTAATATTATCAATTTATAAT
1 AAAATGATCAGTAACATTATCAATTTATAAC
*
773058 AAAATGATCAGTAACATTATCGATTTATAAC
1 AAAATGATCAGTAACATTATCAATTTATAAC
773089 AAAATGAT
1 AAAATGAT
773097 TATTCTTCTG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.49, C:0.09, G:0.06, T:0.37
Consensus pattern (31 bp):
AAAATGATCAGTAACATTATCAATTTATAAC
Found at i:775971 original size:25 final size:24
Alignment explanation
Indices: 775943--776026 Score: 64
Period size: 25 Copynumber: 3.3 Consensus size: 24
775933 TTAAATTTAT
775943 AATATTTTATGTATATTAACTTAAA
1 AATATTTTAT-TATATTAACTTAAA
* *
775968 AATAGTTT-TTATA-CAACTTATTAA
1 AATATTTTATTATATTAACTTA--AA
*
775992 ATATATTTTATTATTAATTTAATTTAAA
1 A-ATATTTTATTA-T-A-TTAACTTAAA
776020 AATATTT
1 AATATTT
776027 ATTTTTTATT
Statistics
Matches: 46, Mismatches: 5, Indels: 14
0.71 0.08 0.22
Matches are distributed among these distances:
22 6 0.13
23 4 0.09
24 4 0.09
25 13 0.28
26 3 0.07
27 7 0.15
28 4 0.09
30 5 0.11
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.51
Consensus pattern (24 bp):
AATATTTTATTATATTAACTTAAA
Found at i:776037 original size:26 final size:27
Alignment explanation
Indices: 775988--776070 Score: 73
Period size: 26 Copynumber: 3.1 Consensus size: 27
775978 ATACAACTTA
* * *
775988 TTAAATATATTTTATTATTAATTT-AAT
1 TTAAAAATA-TTTATTTTTTATTTAAAT
** *
776015 TTAAAAATATTTATTTTTTATTTCCAC
1 TTAAAAATATTTATTTTTTATTTAAAT
776042 TTAAAAATA--TATTTTTTATGTTAAAT
1 TTAAAAATATTTATTTTTTAT-TTAAAT
776068 TTA
1 TTA
776071 TTTGAAGGCA
Statistics
Matches: 46, Mismatches: 8, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
25 10 0.22
26 18 0.39
27 18 0.39
ACGTcount: A:0.39, C:0.04, G:0.01, T:0.57
Consensus pattern (27 bp):
TTAAAAATATTTATTTTTTATTTAAAT
Found at i:776235 original size:31 final size:31
Alignment explanation
Indices: 776172--776239 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
776162 TGATTACCAC
*
776172 ATCTTAATGAAATAAAAACGAAAGTTAACAT
1 ATCTTAATGAAATAAAAACGAAAGTGAACAT
* * **
776203 ATCTTAATTAAATAAAAACGGAAGTGGTCAT
1 ATCTTAATGAAATAAAAACGAAAGTGAACAT
776234 ATCTTA
1 ATCTTA
776240 TGTTTTTTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.49, C:0.10, G:0.12, T:0.29
Consensus pattern (31 bp):
ATCTTAATGAAATAAAAACGAAAGTGAACAT
Found at i:776373 original size:43 final size:43
Alignment explanation
Indices: 776323--776443 Score: 242
Period size: 43 Copynumber: 2.8 Consensus size: 43
776313 TTCATCACTT
776323 CAATCAACTTGCACAGCTTTAAGTTTACAACCAAATTGCCTTA
1 CAATCAACTTGCACAGCTTTAAGTTTACAACCAAATTGCCTTA
776366 CAATCAACTTGCACAGCTTTAAGTTTACAACCAAATTGCCTTA
1 CAATCAACTTGCACAGCTTTAAGTTTACAACCAAATTGCCTTA
776409 CAATCAACTTGCACAGCTTTAAGTTTACAACCAAA
1 CAATCAACTTGCACAGCTTTAAGTTTACAACCAAA
776444 CTGTCTTTCA
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 78 1.00
ACGTcount: A:0.36, C:0.26, G:0.09, T:0.29
Consensus pattern (43 bp):
CAATCAACTTGCACAGCTTTAAGTTTACAACCAAATTGCCTTA
Found at i:779705 original size:21 final size:21
Alignment explanation
Indices: 779679--779723 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
779669 GATTTCTGGG
* *
779679 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
779700 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
779721 CAA
1 CAA
779724 ACGAACAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:780191 original size:20 final size:22
Alignment explanation
Indices: 780151--780207 Score: 66
Period size: 20 Copynumber: 2.7 Consensus size: 22
780141 TGAATATGTG
*
780151 ATATGTTATGATGATATAAACC
1 ATATGATATGATGATATAAACC
*
780173 ATATGATATGAT-A-ATAAACT
1 ATATGATATGATGATATAAACC
780193 ATATGAATATG-TGAT
1 ATATG-ATATGATGAT
780208 TATGAATAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
20 12 0.40
21 7 0.23
22 11 0.37
ACGTcount: A:0.44, C:0.05, G:0.14, T:0.37
Consensus pattern (22 bp):
ATATGATATGATGATATAAACC
Found at i:781289 original size:23 final size:23
Alignment explanation
Indices: 781271--781329 Score: 102
Period size: 22 Copynumber: 2.6 Consensus size: 23
781261 CTCGTATAAA
781271 TGCACCGAAGTGCCCCGTAGAAT
1 TGCACCGAAGTGCCCCGTAGAAT
781294 TGCACCGAAGTG-CCCGTAGAAT
1 TGCACCGAAGTGCCCCGTAGAAT
*
781316 TGCACCGTAGTGCC
1 TGCACCGAAGTGCC
781330 ATATAATGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
22 21 0.62
23 13 0.38
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (23 bp):
TGCACCGAAGTGCCCCGTAGAAT
Found at i:781989 original size:2 final size:2
Alignment explanation
Indices: 781982--782021 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
781972 TCTCTTAAAC
781982 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
782022 TCACATGTTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:782085 original size:5 final size:5
Alignment explanation
Indices: 782075--782103 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
782065 TTCATATAAC
782075 TCATT TCATT TCATT TCATT TCATT TCAT
1 TCATT TCATT TCATT TCATT TCATT TCAT
782104 ATCTATCTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.21, C:0.21, G:0.00, T:0.59
Consensus pattern (5 bp):
TCATT
Found at i:783071 original size:21 final size:21
Alignment explanation
Indices: 783047--783091 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
783037 TCTTGTTCGT
* *
783047 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
783068 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
783089 TTG
1 TTG
783092 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:784088 original size:31 final size:31
Alignment explanation
Indices: 783933--784074 Score: 266
Period size: 31 Copynumber: 4.6 Consensus size: 31
783923 AGGGTCGAGG
*
783933 GTTTACCTATGTTCTTTGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
783964 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
783995 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
784026 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
*
784057 GTTTACCTAGGTTCTTCG
1 GTTTACCTATGTTCTTCG
784075 AAATCTATGG
Statistics
Matches: 109, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 109 1.00
ACGTcount: A:0.18, C:0.19, G:0.23, T:0.40
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGGACATATGGACT
Found at i:786195 original size:31 final size:31
Alignment explanation
Indices: 786149--786209 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
786139 GATGGTAGAA
*
786149 TGACCATTTTATTATAAATCGATAACATTAG
1 TGACCATTTTATTATAAATCAATAACATTAG
* * *
786180 TGACTATTTTGTTATAAATTAATAACATTA
1 TGACCATTTTATTATAAATCAATAACATTA
786210 ATAATTAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.39, C:0.10, G:0.08, T:0.43
Consensus pattern (31 bp):
TGACCATTTTATTATAAATCAATAACATTAG
Found at i:786363 original size:17 final size:18
Alignment explanation
Indices: 786324--786371 Score: 71
Period size: 17 Copynumber: 2.7 Consensus size: 18
786314 TGTTTCTGAG
*
786324 GGAATTGAAATCTTTGAA
1 GGAATTGAAATCTGTGAA
*
786342 GGAATTGAAATCTGT-CA
1 GGAATTGAAATCTGTGAA
786359 GGAATTGAAATCT
1 GGAATTGAAATCT
786372 AATTCCATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
17 14 0.50
18 14 0.50
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (18 bp):
GGAATTGAAATCTGTGAA
Found at i:786941 original size:32 final size:32
Alignment explanation
Indices: 786900--787013 Score: 149
Period size: 32 Copynumber: 3.4 Consensus size: 32
786890 CACCCTAAAC
*
786900 CCGACCCGAATATCACACTTAAAAAAACCCGA
1 CCGACCCGAACATCACACTTAAAAAAACCCGA
786932 CCGACCCGAACATCACACTTTAAAAAACCCGACCCGA
1 CCGACCCGAACATCACAC-TTAAAAAA----ACCCGA
786969 CTCGACCCGAACATCACACTT-AAAAAACCCGA
1 C-CGACCCGAACATCACACTTAAAAAAACCCGA
787001 TCCGACCCGAACA
1 -CCGACCCGAACA
787014 AAATAAAGTT
Statistics
Matches: 74, Mismatches: 1, Indels: 14
0.83 0.01 0.16
Matches are distributed among these distances:
32 34 0.46
33 9 0.12
36 5 0.07
37 9 0.12
38 17 0.23
ACGTcount: A:0.39, C:0.39, G:0.11, T:0.11
Consensus pattern (32 bp):
CCGACCCGAACATCACACTTAAAAAAACCCGA
Found at i:786977 original size:38 final size:36
Alignment explanation
Indices: 786900--787007 Score: 152
Period size: 37 Copynumber: 3.1 Consensus size: 36
786890 CACCCTAAAC
*
786900 CCGACCCGAATATCACACTTAAAAAA----ACCCGA
1 CCGACCCGAACATCACACTTAAAAAACCCGACCCGA
786932 CCGACCCGAACATCACACTTTAAAAAACCCGACCCGA
1 CCGACCCGAACATCACAC-TTAAAAAACCCGACCCGA
*
786969 CTCGACCCGAACATCACACTTAAAAAACCCGATCCGA
1 C-CGACCCGAACATCACACTTAAAAAACCCGACCCGA
787006 CC
1 CC
787008 CGAACAAAAT
Statistics
Matches: 68, Mismatches: 2, Indels: 8
0.87 0.03 0.10
Matches are distributed among these distances:
32 17 0.25
33 8 0.12
36 1 0.01
37 25 0.37
38 17 0.25
ACGTcount: A:0.39, C:0.39, G:0.10, T:0.12
Consensus pattern (36 bp):
CCGACCCGAACATCACACTTAAAAAACCCGACCCGA
Found at i:788378 original size:22 final size:23
Alignment explanation
Indices: 788347--788393 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
788337 TAATCGCGAG
788347 TTTAGAAGATACGA-TTTTGGGC
1 TTTAGAAGATACGATTTTTGGGC
* *
788369 TTTAGCAGATATGATTTTTGGGC
1 TTTAGAAGATACGATTTTTGGGC
788392 TT
1 TT
788394 ATTTAGAGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 12 0.55
23 10 0.45
ACGTcount: A:0.23, C:0.09, G:0.26, T:0.43
Consensus pattern (23 bp):
TTTAGAAGATACGATTTTTGGGC
Found at i:789645 original size:20 final size:20
Alignment explanation
Indices: 789622--789684 Score: 54
Period size: 23 Copynumber: 3.0 Consensus size: 20
789612 ATCTAAATTC
789622 TAAACAGATTACCTAACAAT
1 TAAACAGATTACCTAACAAT
* ** *
789642 TAAACATATTATAGATAAAGAAT
1 TAAACAGA-T-TACCT-AACAAT
789665 TAAACAGATTACCTTAACAA
1 TAAACAGATTACC-TAACAA
789685 AATAACAAGT
Statistics
Matches: 31, Mismatches: 8, Indels: 7
0.67 0.17 0.15
Matches are distributed among these distances:
20 7 0.23
21 7 0.23
22 5 0.16
23 12 0.39
ACGTcount: A:0.52, C:0.14, G:0.06, T:0.27
Consensus pattern (20 bp):
TAAACAGATTACCTAACAAT
Found at i:789840 original size:24 final size:27
Alignment explanation
Indices: 789779--789832 Score: 81
Period size: 29 Copynumber: 1.9 Consensus size: 27
789769 CCAATATATA
*
789779 AACAATTAAACAAATTACATTGAAGAT
1 AACAATTAAACAAATTACAGTGAAGAT
789806 GAAGCAATTAAACAAATTACAGTGAAG
1 -AA-CAATTAAACAAATTACAGTGAAG
789833 TAAATTAACC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
28 2 0.08
29 22 0.92
ACGTcount: A:0.54, C:0.11, G:0.13, T:0.22
Consensus pattern (27 bp):
AACAATTAAACAAATTACAGTGAAGAT
Found at i:794203 original size:27 final size:27
Alignment explanation
Indices: 794173--794224 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
794163 ACGATACCAG
*
794173 TTTGATGGAGAAGAA-GATGATAGTGCA
1 TTTGATGAAGAA-AATGATGATAGTGCA
*
794200 TTTGATGAAGAAAATGCTGATAGTG
1 TTTGATGAAGAAAATGATGATAGTG
794225 ATCTGGATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 2 0.09
27 20 0.91
ACGTcount: A:0.37, C:0.04, G:0.31, T:0.29
Consensus pattern (27 bp):
TTTGATGAAGAAAATGATGATAGTGCA
Found at i:797970 original size:22 final size:23
Alignment explanation
Indices: 797933--797979 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
797923 AACCCTAAAT
797933 AAGCCCAAAAATCGTATCTGCTA
1 AAGCCCAAAAATCGTATCTGCTA
* *
797956 AAGCCC-AGAATCGTATCTTCTA
1 AAGCCCAAAAATCGTATCTGCTA
797978 AA
1 AA
797980 CTCGCGATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 16 0.73
23 6 0.27
ACGTcount: A:0.38, C:0.26, G:0.13, T:0.23
Consensus pattern (23 bp):
AAGCCCAAAAATCGTATCTGCTA
Found at i:801049 original size:17 final size:17
Alignment explanation
Indices: 801027--801061 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
801017 AGCCCTTCCT
801027 ATTTCCTGTCCACACCC
1 ATTTCCTGTCCACACCC
801044 ATTTCCTGTCCACACCC
1 ATTTCCTGTCCACACCC
801061 A
1 A
801062 GCAGTCTTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.20, C:0.46, G:0.06, T:0.29
Consensus pattern (17 bp):
ATTTCCTGTCCACACCC
Found at i:809405 original size:2 final size:2
Alignment explanation
Indices: 809398--809436 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
809388 TATTATATGC
809398 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
809437 GTATTTTAGG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:812456 original size:18 final size:18
Alignment explanation
Indices: 812420--812453 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
812410 AAGATTATTT
812420 TTTTCTTCATCTTCTTTA
1 TTTTCTTCATCTTCTTTA
*
812438 TTTTCTTTAT-TTCTTT
1 TTTTCTTCATCTTCTTT
812454 TATATGTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.09, C:0.18, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTCTTCATCTTCTTTA
Found at i:814484 original size:2 final size:2
Alignment explanation
Indices: 814477--814549 Score: 52
Period size: 2 Copynumber: 39.0 Consensus size: 2
814467 GTCCGGTACA
*
814477 AT AT AT AT A- AT AC AT AT -T AT AT AT -T AT AGT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT
* *
814516 A- AA AT AT AT -T AT AT AT CAT AT AT TT AT -T AT AT AT
1 AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT
814550 TATTATTATA
Statistics
Matches: 57, Mismatches: 5, Indels: 18
0.71 0.06 0.22
Matches are distributed among these distances:
1 7 0.12
2 46 0.81
3 4 0.07
ACGTcount: A:0.47, C:0.03, G:0.01, T:0.49
Consensus pattern (2 bp):
AT
Found at i:814595 original size:26 final size:26
Alignment explanation
Indices: 814547--814648 Score: 86
Period size: 27 Copynumber: 4.0 Consensus size: 26
814537 ATTTATTATA
*
814547 TATTATTATTATAGTGTTATATATTG
1 TATTATTATTATAGTATTATATATTG
*
814573 TATTATCTATTATTGTATT-TATATT-
1 TATTAT-TATTATAGTATTATATATTG
* * *
814598 TTTTATTA-TATATTATT-TATATAG
1 TATTATTATTATAGTATTATATATTG
* *
814622 TATATTTATATTATAATATTATATATT
1 TAT-TAT-TATTATAGTATTATATATT
814649 TCTATTTATT
Statistics
Matches: 60, Mismatches: 10, Indels: 10
0.75 0.12 0.12
Matches are distributed among these distances:
23 12 0.20
24 4 0.07
25 7 0.12
26 14 0.23
27 18 0.30
28 5 0.08
ACGTcount: A:0.33, C:0.01, G:0.05, T:0.61
Consensus pattern (26 bp):
TATTATTATTATAGTATTATATATTG
Found at i:814642 original size:8 final size:7
Alignment explanation
Indices: 814480--814648 Score: 104
Period size: 7 Copynumber: 24.1 Consensus size: 7
814470 CGGTACAATA
*
814480 TATATAA
1 TATATAT
*
814487 TACATAT
1 TATATAT
814494 TATATATT
1 TATATA-T
814502 ATAGTATAT
1 -TA-TATAT
*
814511 TATATAA
1 TATATAT
*
814518 AATATAT
1 TATATAT
814525 TATATAT
1 TATATAT
*
814532 CATATA-
1 TATATAT
814538 T-T-TAT
1 TATATAT
814543 TATATAT
1 TATATAT
814550 TAT-TAT
1 TATATAT
*
814556 TATAGTGT
1 TATA-TAT
814564 TATATAT
1 TATATAT
*
814571 TGTATTAT
1 TATA-TAT
814579 CTAT-TAT
1 -TATATAT
*
814586 TGTAT-T
1 TATATAT
814592 TATAT-T
1 TATATAT
*
814598 T-TTTAT
1 TATATAT
814604 TATATAT
1 TATATAT
*
814611 TATTTAT
1 TATATAT
814618 ATAGTATAT
1 -TA-TATAT
814627 T-TATAT
1 TATATAT
814633 TATAATAT
1 TAT-ATAT
814641 TATATAT
1 TATATAT
814648 T
1 T
814649 TCTATTTATT
Statistics
Matches: 126, Mismatches: 19, Indels: 34
0.70 0.11 0.19
Matches are distributed among these distances:
4 2 0.02
5 4 0.03
6 24 0.19
7 61 0.48
8 22 0.17
9 9 0.07
10 4 0.03
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.56
Consensus pattern (7 bp):
TATATAT
Found at i:814654 original size:27 final size:25
Alignment explanation
Indices: 814624--814682 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 25
814614 TTATATAGTA
814624 TATTTATATTATAATATTATATATTTC
1 TATTTATATTATAATATTAT-T-TTTC
814651 TA-TT-TATTA-AATATTATTTTTC
1 TATTTATATTATAATATTATTTTTC
814673 T-TTTAT-TTAT
1 TATTTATATTAT
814683 TTTCAGGTCC
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
22 10 0.34
23 2 0.07
24 8 0.28
25 5 0.17
26 2 0.07
27 2 0.07
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.64
Consensus pattern (25 bp):
TATTTATATTATAATATTATTTTTC
Found at i:814668 original size:14 final size:14
Alignment explanation
Indices: 814491--814669 Score: 86
Period size: 13 Copynumber: 12.1 Consensus size: 14
814481 ATATAATACA
814491 TATTATATATTATAGT
1 TATTATATATTAT--T
*
814507 ATATTATATAAAATATAT
1 -TATTATAT--ATTAT-T
814525 TA-TATATCATATATT
1 TATTATAT-AT-TATT
814540 TATTATATATTA-T
1 TATTATATATTATT
814553 TATTATAGTGTTATATATT
1 TATTATA----TAT-TATT
*
814572 GTATTATCTATTATT
1 -TATTATATATTATT
*
814587 GTATT-TATATTTTT
1 -TATTATATATTATT
814601 TATTATATATTATT
1 TATTATATATTATT
814615 TA-TATAGTA-TATT
1 TATTATA-TATTATT
*
814628 TA-TAT-TATAATAT
1 TATTATATATTAT-T
*
814641 TA-TATATTTCTATT
1 TATTATATAT-TATT
*
814655 TATTAAATATTATT
1 TATTATATATTATT
814669 T
1 T
814670 TTCTTTTATT
Statistics
Matches: 131, Mismatches: 13, Indels: 39
0.72 0.07 0.21
Matches are distributed among these distances:
11 2 0.02
12 2 0.02
13 31 0.24
14 31 0.24
15 22 0.17
16 16 0.12
17 13 0.10
18 3 0.02
19 5 0.04
20 6 0.05
ACGTcount: A:0.37, C:0.02, G:0.03, T:0.58
Consensus pattern (14 bp):
TATTATATATTATT
Found at i:814679 original size:21 final size:25
Alignment explanation
Indices: 814630--814679 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 25
814620 AGTATATTTA
814630 TATTATAATATTATATATTTCTATT
1 TATTATAATATTATATATTTCTATT
814655 TATTA-AATATTAT-T-TTTCT-TT
1 TATTATAATATTATATATTTCTATT
814676 TATT
1 TATT
814680 TATTTTCAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
21 6 0.24
22 5 0.20
23 1 0.04
24 8 0.32
25 5 0.20
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (25 bp):
TATTATAATATTATATATTTCTATT
Found at i:814819 original size:28 final size:28
Alignment explanation
Indices: 814779--814837 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 28
814769 CAAGCCCGAT
* *
814779 CCAGCAGGGGTAATGTAACACCCCCAAC
1 CCAGCAAGGGTAATATAACACCCCCAAC
814807 CCAGCAAGGGTAATATAACACCCCCAAC
1 CCAGCAAGGGTAATATAACACCCCCAAC
814835 CCA
1 CCA
814838 TATCCGACCC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.36, C:0.37, G:0.17, T:0.10
Consensus pattern (28 bp):
CCAGCAAGGGTAATATAACACCCCCAAC
Found at i:816927 original size:21 final size:21
Alignment explanation
Indices: 816895--816937 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
816885 TGCTTCTTTA
816895 ATTGAGAGTGCATCGATACAC
1 ATTGAGAGTGCATCGATACAC
*
816916 ATTGA-AGATGCATCGATGCAC
1 ATTGAGAG-TGCATCGATACAC
816937 A
1 A
816938 CAACTCAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 2 0.10
21 18 0.90
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (21 bp):
ATTGAGAGTGCATCGATACAC
Found at i:819989 original size:18 final size:18
Alignment explanation
Indices: 819968--820002 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
819958 GTAGAACACA
* *
819968 TATGTCCTGTAGGACCAT
1 TATGTCCCGAAGGACCAT
819986 TATGTCCCGAAGGACCA
1 TATGTCCCGAAGGACCA
820003 CGTAGAACCC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (18 bp):
TATGTCCCGAAGGACCAT
Found at i:821213 original size:21 final size:21
Alignment explanation
Indices: 821181--821223 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
821171 TGATTCTTTA
821181 ATTGAGAGTGCATCGATACAC
1 ATTGAGAGTGCATCGATACAC
*
821202 ATTGA-AGATGCATCGATGCAC
1 ATTGAGAG-TGCATCGATACAC
821223 A
1 A
821224 CAACTCAGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 2 0.10
21 18 0.90
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (21 bp):
ATTGAGAGTGCATCGATACAC
Found at i:824274 original size:18 final size:18
Alignment explanation
Indices: 824253--824287 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
824243 GTAGAACACA
* *
824253 TATGTCCTGTAGGACCAT
1 TATGTCCCGAAGGACCAT
824271 TATGTCCCGAAGGACCA
1 TATGTCCCGAAGGACCA
824288 CGTAGAACCC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (18 bp):
TATGTCCCGAAGGACCAT
Found at i:825496 original size:21 final size:21
Alignment explanation
Indices: 825464--825507 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
825454 CGCTTCTTTA
825464 ATTGAGAGTGCATCGATACAC
1 ATTGAGAGTGCATCGATACAC
*
825485 ATTGA-AGATGCATCGATGCAC
1 ATTGAGAG-TGCATCGATACAC
825506 AT
1 AT
825508 AACTCAGGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 2 0.10
21 19 0.90
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (21 bp):
ATTGAGAGTGCATCGATACAC
Found at i:829602 original size:19 final size:19
Alignment explanation
Indices: 829578--829626 Score: 98
Period size: 19 Copynumber: 2.6 Consensus size: 19
829568 TAAAGGGATT
829578 CATCGATGCACTCCTTATG
1 CATCGATGCACTCCTTATG
829597 CATCGATGCACTCCTTATG
1 CATCGATGCACTCCTTATG
829616 CATCGATGCAC
1 CATCGATGCAC
829627 GAATTACATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.22, C:0.33, G:0.16, T:0.29
Consensus pattern (19 bp):
CATCGATGCACTCCTTATG
Found at i:829682 original size:21 final size:21
Alignment explanation
Indices: 829650--829692 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
829640 TGCTTCTTTA
829650 ATTGAGAGTGCATCGATACAC
1 ATTGAGAGTGCATCGATACAC
*
829671 ATTGA-AGATGCATCGATGCAC
1 ATTGAGAG-TGCATCGATACAC
829692 A
1 A
829693 CAACTCAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 2 0.10
21 18 0.90
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (21 bp):
ATTGAGAGTGCATCGATACAC
Found at i:846262 original size:63 final size:64
Alignment explanation
Indices: 846167--846330 Score: 172
Period size: 64 Copynumber: 2.6 Consensus size: 64
846157 TTTCAAAGTA
* * *** *
846167 GTGTACCGATGCACTA-ATCAATGCATCGATGCAC-CTTGAATAAATTGAATTTCAAATTCATTT
1 GTGTACCGATGCAC-AGA-CTATGCATCGATGCACTCCTGAATAAATTGAACACCAAATGCATTT
846230 T
64 T
* * **
846231 GTGTACTGATGCACAAGGC-ATGCATCGATGCACTCCTGAATATTTTGAACACCAAATGCATTTT
1 GTGTACCGATGCAC-AGACTATGCATCGATGCACTCCTGAATAAATTGAACACCAAATGCATTTT
* *
846295 GTGTACCGATGTACAGACTATGCATCGTTGCACTCC
1 GTGTACCGATGCACAGACTATGCATCGATGCACTCC
846331 AGCTTGTTTG
Statistics
Matches: 83, Mismatches: 14, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
63 17 0.20
64 66 0.80
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (64 bp):
GTGTACCGATGCACAGACTATGCATCGATGCACTCCTGAATAAATTGAACACCAAATGCATTTT
Found at i:847860 original size:28 final size:28
Alignment explanation
Indices: 847802--847861 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
847792 ATGGTGTGCC
* *
847802 TATATAAATATGATATTATAAGAATATA
1 TATATAAATATGATATTATAAGAAGAGA
* * **
847830 TATATATATATGATTTTATATTAAGAGA
1 TATATAAATATGATATTATAAGAAGAGA
847858 TATA
1 TATA
847862 ACTTCATAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.43
Consensus pattern (28 bp):
TATATAAATATGATATTATAAGAAGAGA
Found at i:848134 original size:57 final size:56
Alignment explanation
Indices: 848057--848167 Score: 141
Period size: 57 Copynumber: 2.0 Consensus size: 56
848047 TACAGATAAT
* *
848057 GATATGACTATCCATTATATAAATTTTATTTCACCCACTTCTATATTAATATTATG
1 GATATGAATATCCATTATATAAATTTTATTTCACCCACTTCTACATTAATATTATG
* * * * * *
848113 GATATGAATATCATATTATATATATTTTCTTTCTCCCACTTTTACATTATTATTA
1 GATATGAATATC-CATTATATAAATTTTATTTCACCCACTTCTACATTAATATTA
848168 CGCATATTTT
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
56 11 0.24
57 35 0.76
ACGTcount: A:0.32, C:0.15, G:0.05, T:0.48
Consensus pattern (56 bp):
GATATGAATATCCATTATATAAATTTTATTTCACCCACTTCTACATTAATATTATG
Found at i:848517 original size:7 final size:7
Alignment explanation
Indices: 848505--848545 Score: 55
Period size: 7 Copynumber: 5.6 Consensus size: 7
848495 ATAGTTATTA
848505 TTATTTT
1 TTATTTT
848512 TTATTTT
1 TTATTTT
848519 TTATTTTGT
1 TTA-TTT-T
*
848528 TTCTTTT
1 TTATTTT
848535 TTATTTT
1 TTATTTT
848542 TTAT
1 TTAT
848546 AATTTTTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
7 21 0.70
8 6 0.20
9 3 0.10
ACGTcount: A:0.12, C:0.02, G:0.02, T:0.83
Consensus pattern (7 bp):
TTATTTT
Found at i:848553 original size:16 final size:14
Alignment explanation
Indices: 848505--848545 Score: 55
Period size: 16 Copynumber: 2.8 Consensus size: 14
848495 ATAGTTATTA
848505 TTATTTTTTATTTT
1 TTATTTTTTATTTT
*
848519 TTATTTTGTTTCTTTT
1 TTA-TTT-TTTATTTT
848535 TTATTTTTTAT
1 TTATTTTTTAT
848546 AATTTTTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 7 0.30
15 6 0.26
16 10 0.43
ACGTcount: A:0.12, C:0.02, G:0.02, T:0.83
Consensus pattern (14 bp):
TTATTTTTTATTTT
Found at i:849036 original size:16 final size:16
Alignment explanation
Indices: 849015--849048 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
849005 TGAATATTTT
*
849015 TAAATAATTTTTTATA
1 TAAATAATTATTTATA
*
849031 TAAATACTTATTTATA
1 TAAATAATTATTTATA
849047 TA
1 TA
849049 TAATTATAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (16 bp):
TAAATAATTATTTATA
Found at i:849107 original size:24 final size:26
Alignment explanation
Indices: 849045--849110 Score: 68
Period size: 24 Copynumber: 2.6 Consensus size: 26
849035 TACTTATTTA
849045 TATATAATTATAAATTTAATTATATATAT
1 TATATAATTAT---TTTAATTATATATAT
*
849074 TAAAT-A-TATTTTAA-TATATA-AT
1 TATATAATTATTTTAATTATATATAT
849096 TATATAATTATTTTA
1 TATATAATTATTTTA
849111 TTTTACTATT
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
22 6 0.18
23 7 0.21
24 12 0.36
27 3 0.09
28 1 0.03
29 4 0.12
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (26 bp):
TATATAATTATTTTAATTATATATAT
Found at i:856158 original size:31 final size:30
Alignment explanation
Indices: 856094--856248 Score: 132
Period size: 31 Copynumber: 5.1 Consensus size: 30
856084 CTAATGTGAC
* * * *
856094 TCTTGGGTAGGCCTGCGGCCCCGAGATCAT
1 TCTTGGGTAGGCTTGTGGCCCTGAGATCTT
* *
856124 TCTTGGGTAGGCATTGTGGCCCTGGGATTTT
1 TCTTGGGTAGGC-TTGTGGCCCTGAGATCTT
* * * *
856155 TCTTGGGTAGACTCCGTGGCCTTGAGATCAT
1 TCTTGGGTAGGCT-TGTGGCCCTGAGATCTT
* *
856186 TCTTAGGTAGGCTTTGCGGCCCTGAGATCTT
1 TCTTGGGTAGGC-TTGTGGCCCTGAGATCTT
* * *
856217 ACTTGGGTAGGCCCTGTGG-CCTGAGAACTT
1 TCTTGGGTAGG-CTTGTGGCCCTGAGATCTT
856247 TC
1 TC
856249 GATCCCGAGC
Statistics
Matches: 97, Mismatches: 24, Indels: 8
0.75 0.19 0.06
Matches are distributed among these distances:
30 24 0.25
31 71 0.73
32 2 0.02
ACGTcount: A:0.14, C:0.23, G:0.32, T:0.32
Consensus pattern (30 bp):
TCTTGGGTAGGCTTGTGGCCCTGAGATCTT
Found at i:856195 original size:62 final size:61
Alignment explanation
Indices: 856116--856242 Score: 166
Period size: 62 Copynumber: 2.1 Consensus size: 61
856106 CTGCGGCCCC
* * * * *
856116 GAGATCATTCTTGGGTAGGCATTGTGGCCCTGGGATTTTTCTTGGGTAGACTCC-GTGGCCTT
1 GAGATCATTCTTAGGTAGGCATTGCGGCCCTGAGATCTTACTTGGGTAGAC-CCTGTGGCC-T
* *
856178 GAGATCATTCTTAGGTAGGCTTTGCGGCCCTGAGATCTTACTTGGGTAGGCCCTGTGGCCT
1 GAGATCATTCTTAGGTAGGCATTGCGGCCCTGAGATCTTACTTGGGTAGACCCTGTGGCCT
856239 GAGA
1 GAGA
856243 ACTTTCGATC
Statistics
Matches: 57, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
61 7 0.12
62 50 0.88
ACGTcount: A:0.15, C:0.20, G:0.32, T:0.32
Consensus pattern (61 bp):
GAGATCATTCTTAGGTAGGCATTGCGGCCCTGAGATCTTACTTGGGTAGACCCTGTGGCCT
Found at i:857383 original size:19 final size:19
Alignment explanation
Indices: 857359--857458 Score: 78
Period size: 19 Copynumber: 4.8 Consensus size: 19
857349 AATGCAGTTT
857359 ATGCATCGATGCACTCTTC
1 ATGCATCGATGCACTCTTC
*
857378 ATGCATCGATGCACTCAGGTTTTA
1 ATGCATCGATGCACTC-----TTC
*
857402 ATGAAAACATCGAATGCAGT-TT-
1 ATG----CATCG-ATGCACTCTTC
857424 ATGCATCGATGCACTCTTC
1 ATGCATCGATGCACTCTTC
857443 ATGCATCGATGCACTC
1 ATGCATCGATGCACTC
857459 AGGTTTTAAT
Statistics
Matches: 66, Mismatches: 3, Indels: 24
0.71 0.03 0.26
Matches are distributed among these distances:
17 6 0.09
18 7 0.11
19 32 0.48
22 3 0.05
23 2 0.03
24 5 0.08
28 5 0.08
29 6 0.09
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (19 bp):
ATGCATCGATGCACTCTTC
Found at i:857411 original size:65 final size:65
Alignment explanation
Indices: 857342--857504 Score: 310
Period size: 65 Copynumber: 2.5 Consensus size: 65
857332 GAATAAATTG
857342 AACATCGAATGCAGTTTATGCATCGATGCACTCTTCATGCATCGATGCACTCAGGTTTTAATGAA
1 AACATCGAATGCAGTTTATGCATCGATGCACTCTTCATGCATCGATGCACTCAGGTTTTAATGAA
857407 AACATCGAATGCAGTTTATGCATCGATGCACTCTTCATGCATCGATGCACTCAGGTTTTAATGAA
1 AACATCGAATGCAGTTTATGCATCGATGCACTCTTCATGCATCGATGCACTCAGGTTTTAATGAA
857472 AACATCGAATGCA-TTTGATGCATCGATGCACTC
1 AACATCGAATGCAGTTT-ATGCATCGATGCACTC
857505 AGGCTATTTT
Statistics
Matches: 97, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
64 3 0.03
65 94 0.97
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.30
Consensus pattern (65 bp):
AACATCGAATGCAGTTTATGCATCGATGCACTCTTCATGCATCGATGCACTCAGGTTTTAATGAA
Found at i:857538 original size:45 final size:45
Alignment explanation
Indices: 857439--857549 Score: 163
Period size: 45 Copynumber: 2.4 Consensus size: 45
857429 TCGATGCACT
857439 CTTCATGCATCGATGCACTCAGGTTTTAATGAAAACATCGAATGCA
1 CTTCATGCATCGATGCACTCAGGTTTT-ATGAAAACATCGAATGCA
* *
857485 TTTGATGCATCGATGCACTCAGGCTATTT-TG-AAACATCGAATGCA
1 CTTCATGCATCGATGCACTCAGG-T-TTTATGAAAACATCGAATGCA
857530 CTTCATGCATCGATGCACTC
1 CTTCATGCATCGATGCACTC
857550 TTAGTGCACC
Statistics
Matches: 59, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
45 32 0.54
46 23 0.39
47 1 0.02
48 3 0.05
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (45 bp):
CTTCATGCATCGATGCACTCAGGTTTTATGAAAACATCGAATGCA
Found at i:857547 original size:17 final size:19
Alignment explanation
Indices: 857519--857567 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
857509 TATTTTGAAA
857519 CATCGAATGCACT-TCA-TG
1 CATCG-ATGCACTCTCAGTG
*
857537 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTCAGTG
*
857556 CACCGATGCACT
1 CATCGATGCACT
857568 AAGGGTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 13 0.48
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (19 bp):
CATCGATGCACTCTCAGTG
Found at i:860841 original size:20 final size:20
Alignment explanation
Indices: 860818--860858 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
860808 CAAGAATATA
860818 CCCCAATTCTTGAGAACACT
1 CCCCAATTCTTGAGAACACT
860838 CCCCAATTCTTGAGAACACT
1 CCCCAATTCTTGAGAACACT
860858 C
1 C
860859 TTTCTCAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.37, G:0.10, T:0.24
Consensus pattern (20 bp):
CCCCAATTCTTGAGAACACT
Found at i:861432 original size:65 final size:66
Alignment explanation
Indices: 861358--861525 Score: 193
Period size: 65 Copynumber: 2.6 Consensus size: 66
861348 TCAAAATAGT
861358 CTGAGTGCATCGATGCATGGATTGTGCATCGATGCATCAAA-TGCATTCGATGTTTTC-ATTAAA
1 CTGAGTGCATCGATGCATGGATTGTGCATCGATGCATCAAACTGCATTCGATG--TTCAATTAAA
861421 AC-
64 ACA
* ** * * **
861423 CTGAGTGCATCGATGCATGAAGAGTGCATCGATGCAT-AAACTGCATTTGATGTTCAATTTATTC
1 CTGAGTGCATCGATGCATGGATTGTGCATCGATGCATCAAACTGCATTCGATGTTCAATTAAAAC
861487 A
66 A
* *
861488 TTG-GTGCATCGATGCATGGATTGGTGCATCGGTGCATC
1 CTGAGTGCATCGATGCATGGATT-GTGCATCGATGCATC
861526 CCTTTGAAAA
Statistics
Matches: 86, Mismatches: 12, Indels: 9
0.80 0.11 0.08
Matches are distributed among these distances:
63 3 0.03
64 24 0.28
65 59 0.69
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (66 bp):
CTGAGTGCATCGATGCATGGATTGTGCATCGATGCATCAAACTGCATTCGATGTTCAATTAAAAC
A
Found at i:861512 original size:20 final size:20
Alignment explanation
Indices: 861487--861524 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
861477 CAATTTATTC
861487 ATTGGTGCATCGATGCATGG
1 ATTGGTGCATCGATGCATGG
*
861507 ATTGGTGCATCGGTGCAT
1 ATTGGTGCATCGATGCAT
861525 CCCTTTGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.16, G:0.34, T:0.32
Consensus pattern (20 bp):
ATTGGTGCATCGATGCATGG
Found at i:866565 original size:23 final size:23
Alignment explanation
Indices: 866539--866607 Score: 86
Period size: 23 Copynumber: 3.0 Consensus size: 23
866529 CACCACAGCT
*
866539 CGTATAAATGCACCGAAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
* *
866562 CGTAGAATTGCACC-ATAGTGCCG
1 CGTAGAAATGCACCGA-AGTGCCA
*
866585 CATAGAAATGCACCGAAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
866608 TATAAAGTTG
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
22 1 0.03
23 36 0.95
24 1 0.03
ACGTcount: A:0.33, C:0.26, G:0.23, T:0.17
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCA
Found at i:866749 original size:103 final size:103
Alignment explanation
Indices: 866616--866840 Score: 360
Period size: 103 Copynumber: 2.2 Consensus size: 103
866606 CATATAAAGT
* *
866616 TGTCCCTAAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAAGATAAAGTATGTGT
1 TGTCCCGAAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAAGATAAAGTATGTGC
866681 CTCAACAAACCTCACACCTGTTCCAAAGAATACATATA
66 CTCAACAAACCTCACACCTGTTCCAAAGAATACATATA
* * *
866719 TGTCCCGAAGGACCACATATTATTCCTTAAGAATCATATATATATGCCAAAGATCAAGTATGTGC
1 TGTCCCGAAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAAGATAAAGTATGTGC
* * *
866784 CTCTACAGACCTCACACCTGTTTCAAAGAATACATATA
66 CTCAACAAACCTCACACCTGTTCCAAAGAATACATATA
* *
866822 TATCCCGAAAGACCACATA
1 TGTCCCGAAGGACCACATA
866841 GACCCTCTAC
Statistics
Matches: 112, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
103 112 1.00
ACGTcount: A:0.38, C:0.24, G:0.12, T:0.26
Consensus pattern (103 bp):
TGTCCCGAAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAAGATAAAGTATGTGC
CTCAACAAACCTCACACCTGTTCCAAAGAATACATATA
Found at i:873317 original size:21 final size:21
Alignment explanation
Indices: 873284--873324 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
873274 TTCTGGGCAA
* *
873284 GGGAATCGGTACCCATTCAAG
1 GGGAACCGATACCCATTCAAG
*
873305 GGGAACCGATACCCCTTCAA
1 GGGAACCGATACCCATTCAA
873325 ATGAACAACA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.29, C:0.29, G:0.24, T:0.17
Consensus pattern (21 bp):
GGGAACCGATACCCATTCAAG
Found at i:875012 original size:149 final size:149
Alignment explanation
Indices: 874826--875140 Score: 571
Period size: 149 Copynumber: 2.1 Consensus size: 149
874816 GAGTCGAGGG
* *
874826 TCTACGCGGTCCTTCGGGGCATATGTATATTCTTTGGAACATGTGTGAAGTCTTGAAAGACACAT
1 TCTACGCGGTCCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTGGAAAGACACAT
*
874891 A-TATGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATTATT
66 ACT-TGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATT
874955 ATATGGCACTACGGTGCAAT
130 ATATGGCACTACGGTGCAAT
874975 TCTACGCGGTCCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTGGAAAGACACAT
1 TCTACGCGGTCCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTGGAAAGACACAT
875040 ACTTGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATTA
66 ACTTGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATTA
875105 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
875124 TCTACGCGG-CACTTCGG
1 TCTACGCGGTC-CTTCGG
875141 TGCAATTATA
Statistics
Matches: 161, Mismatches: 3, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
148 1 0.01
149 159 0.99
150 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (149 bp):
TCTACGCGGTCCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTGGAAAGACACAT
ACTTGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATTA
TATGGCACTACGGTGCAAT
Found at i:875141 original size:23 final size:23
Alignment explanation
Indices: 875108--875152 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
875098 ATCATTATAT
*
875108 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTATACGC
*
875131 GGCACTTCGGTGCAATTATACG
1 GGCACTACGGTGCAATTATACG
875153 AGCTGTGGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (23 bp):
GGCACTACGGTGCAATTATACGC
Found at i:878439 original size:21 final size:21
Alignment explanation
Indices: 878406--878446 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
878396 TTCTGGGCAA
* *
878406 GGGAATCGGTACCCATTCAAG
1 GGGAACCGATACCCATTCAAG
*
878427 GGGAACCGATACCCCTTCAA
1 GGGAACCGATACCCATTCAA
878447 ACGAACAACA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.29, C:0.29, G:0.24, T:0.17
Consensus pattern (21 bp):
GGGAACCGATACCCATTCAAG
Found at i:880127 original size:149 final size:149
Alignment explanation
Indices: 879946--880260 Score: 553
Period size: 149 Copynumber: 2.1 Consensus size: 149
879936 GAGTCGAGGG
*
879946 TCTACGCGGTCCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTTGAAAGACACAT
1 TCTACGCGGTCCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTGGAAAGACACAT
*
880011 A-TATGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATTATT
66 ACT-TGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATT
880075 ATATGGCACTACGGTGCAAT
130 ATATGGCACTACGGTGCAAT
* *
880095 TCTACGCGTTCCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTGGAAAGGCACAT
1 TCTACGCGGTCCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTGGAAAGACACAT
880160 ACTTGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATTA
66 ACTTGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATTA
*
880225 TATGGCACTACGGTGTAAT
131 TATGGCACTACGGTGCAAT
880244 TCTACGCGG-CACTTCGG
1 TCTACGCGGTC-CTTCGG
880261 TGCAATTATA
Statistics
Matches: 158, Mismatches: 6, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
148 1 0.01
149 156 0.99
150 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (149 bp):
TCTACGCGGTCCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTGGAAAGACACAT
ACTTGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATTA
TATGGCACTACGGTGCAAT
Found at i:880261 original size:23 final size:23
Alignment explanation
Indices: 880228--880272 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
880218 ATCATTATAT
* *
880228 GGCACTACGGTGTAATTCTACGC
1 GGCACTACGGTGCAATTATACGC
*
880251 GGCACTTCGGTGCAATTATACG
1 GGCACTACGGTGCAATTATACG
880273 AGCTGTGGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.27
Consensus pattern (23 bp):
GGCACTACGGTGCAATTATACGC
Found at i:881926 original size:23 final size:23
Alignment explanation
Indices: 881900--881968 Score: 93
Period size: 23 Copynumber: 3.0 Consensus size: 23
881890 CACCACAGCT
*
881900 CGTATAAATGCACCGAAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
* * *
881923 CGTAGAATTGCACCGTAGTGCCG
1 CGTAGAAATGCACCGAAGTGCCA
*
881946 CATAGAAATGCACCGAAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
881969 TATAAAGTTG
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.32, C:0.26, G:0.25, T:0.17
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCA
Found at i:882157 original size:103 final size:103
Alignment explanation
Indices: 881977--882201 Score: 396
Period size: 103 Copynumber: 2.2 Consensus size: 103
881967 CATATAAAGT
* * *
881977 TGTCCCTAATGACCACATATCATTCCTTAAGAATCATATACATATGGCAAAGATCAAGTATGTGT
1 TGTCCCGAAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAAGATCAAGTATGTGT
882042 CTCAAAAAACCTCACACCTATTCCAAAGAATACATATA
66 CTCAAAAAACCTCACACCTATTCCAAAGAATACATATA
882080 TGTCCCGAAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAAGATCAAGTATGTGT
1 TGTCCCGAAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAAGATCAAGTATGTGT
* * *
882145 CTCAACAGACCTCACACCTCTTCCAAAGAATACATATA
66 CTCAAAAAACCTCACACCTATTCCAAAGAATACATATA
882183 TGTCCCGAAGGACCACATA
1 TGTCCCGAAGGACCACATA
882202 GACCCTCTAC
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
103 116 1.00
ACGTcount: A:0.38, C:0.25, G:0.12, T:0.25
Consensus pattern (103 bp):
TGTCCCGAAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAAGATCAAGTATGTGT
CTCAAAAAACCTCACACCTATTCCAAAGAATACATATA
Found at i:884166 original size:16 final size:17
Alignment explanation
Indices: 884130--884167 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
884120 AGTCAACTCA
* *
884130 TTGACTTTGACTGATAG
1 TTGACTTTGACTCAGAG
884147 TTGACTTTGAC-CAGAG
1 TTGACTTTGACTCAGAG
884163 TTGAC
1 TTGAC
884168 CGTTGACTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.37
Consensus pattern (17 bp):
TTGACTTTGACTCAGAG
Found at i:887181 original size:2 final size:2
Alignment explanation
Indices: 887174--887198 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
887164 CCCATCATAT
887174 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
887199 GACAGATTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:889019 original size:119 final size:119
Alignment explanation
Indices: 888864--889220 Score: 467
Period size: 119 Copynumber: 3.0 Consensus size: 119
888854 TCTGCACATT
* *
888864 TTTACTCCATATTGTTTTTTATTCTTTTGTTCACTATGTGTGGTGCACTGCATTTACTTTTTATC
1 TTTACTTCATATTCTTTTTTATTCTTTTGTTCACTATGTGTGGTGCACTGCATTTACTTTTTATC
888929 CTTGAAATTAATATGAAAAAAATGTTGGCAATAATGTAGATGTTATTTTGGTTC
66 CTTGAAATTAATATGAAAAAAATGTTGGCAATAATGTAGATGTTATTTTGGTTC
* * *
888983 TTTACTTCATATTCTTTTTTATTCTTTTGTTCACTATGTGTGGTGTACTTCATTTACATTTTATC
1 TTTACTTCATATTCTTTTTTATTCTTTTGTTCACTATGTGTGGTGCACTGCATTTACTTTTTATC
* * * * * * * *****
889048 CTTGAAA-TAA-A-G--GAACATTTTGGCATTAGA-GCAAAGTAGTTCTCCACATT-
66 CTTGAAATTAATATGAAAAAAATGTTGGCAATA-ATGTAGA-T-GTTATTTTGGTTC
889098 TTTACTTCATATTCTTTTTTATTCTTTTGTTCACTATGTGTGGTGCACTGCATTTACTTTTTATC
1 TTTACTTCATATTCTTTTTTATTCTTTTGTTCACTATGTGTGGTGCACTGCATTTACTTTTTATC
* *
889163 CTTGAAATTAATATGAAAAAAATGTTGGCAAGAATGTAGATATTATTTTGGTTC
66 CTTGAAATTAATATGAAAAAAATGTTGGCAATAATGTAGATGTTATTTTGGTTC
889217 TTTA
1 TTTA
889221 TTTCTTGATA
Statistics
Matches: 194, Mismatches: 34, Indels: 20
0.78 0.14 0.08
Matches are distributed among these distances:
114 15 0.08
115 71 0.37
116 10 0.05
117 2 0.01
118 9 0.05
119 73 0.38
120 14 0.07
ACGTcount: A:0.25, C:0.13, G:0.14, T:0.48
Consensus pattern (119 bp):
TTTACTTCATATTCTTTTTTATTCTTTTGTTCACTATGTGTGGTGCACTGCATTTACTTTTTATC
CTTGAAATTAATATGAAAAAAATGTTGGCAATAATGTAGATGTTATTTTGGTTC
Found at i:889152 original size:115 final size:115
Alignment explanation
Indices: 888821--889170 Score: 454
Period size: 115 Copynumber: 3.0 Consensus size: 115
888811 TGATATCTAT
* * *
888821 TAAAGGAACATTTTGGCATTAGAGCAAAGTAGTTCTGCACATTTTTACTCCATATTGTTTTTTAT
1 TAAAGGAACATTTTGGCATTAGAGCAAAGTAGTTCTCCACATTTTTACTTCATATTCTTTTTTAT
888886 TCTTTTGTTCACTATGTGTGGTGCACTGCATTTACTTTTTATCCTTGAAA
66 TCTTTTGTTCACTATGTGTGGTGCACTGCATTTACTTTTTATCCTTGAAA
* * * * * * * *****
888936 TTAATATGAAAAAAATGTTGGCAATA-ATGTAGA-T-GTTATTTTGGTTCTTTACTTCATATTCT
1 -TAA-A-G--GAACATTTTGGCATTAGA-GCAAAGTAGTTCTCCACATT-TTTACTTCATATTCT
* * *
888998 TTTTTATTCTTTTGTTCACTATGTGTGGTGTACTTCATTTACATTTTATCCTTGAAA
59 TTTTTATTCTTTTGTTCACTATGTGTGGTGCACTGCATTTACTTTTTATCCTTGAAA
889055 TAAAGGAACATTTTGGCATTAGAGCAAAGTAGTTCTCCACATTTTTACTTCATATTCTTTTTTAT
1 TAAAGGAACATTTTGGCATTAGAGCAAAGTAGTTCTCCACATTTTTACTTCATATTCTTTTTTAT
889120 TCTTTTGTTCACTATGTGTGGTGCACTGCATTTACTTTTTATCCTTGAAA
66 TCTTTTGTTCACTATGTGTGGTGCACTGCATTTACTTTTTATCCTTGAAA
889170 T
1 T
889171 TAATATGAAA
Statistics
Matches: 193, Mismatches: 32, Indels: 19
0.79 0.13 0.08
Matches are distributed among these distances:
114 15 0.08
115 72 0.37
116 10 0.05
117 2 0.01
118 10 0.05
119 69 0.36
120 15 0.08
ACGTcount: A:0.25, C:0.14, G:0.14, T:0.47
Consensus pattern (115 bp):
TAAAGGAACATTTTGGCATTAGAGCAAAGTAGTTCTCCACATTTTTACTTCATATTCTTTTTTAT
TCTTTTGTTCACTATGTGTGGTGCACTGCATTTACTTTTTATCCTTGAAA
Found at i:904590 original size:27 final size:27
Alignment explanation
Indices: 904552--904616 Score: 121
Period size: 27 Copynumber: 2.4 Consensus size: 27
904542 TAGGAATCAT
904552 AGAGATGATTTGTTACCATTCCTATAG
1 AGAGATGATTTGTTACCATTCCTATAG
*
904579 AGATATGATTTGTTACCATTCCTATAG
1 AGAGATGATTTGTTACCATTCCTATAG
904606 AGAGATGATTT
1 AGAGATGATTT
904617 TGTAAATAGA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.38
Consensus pattern (27 bp):
AGAGATGATTTGTTACCATTCCTATAG
Found at i:913061 original size:15 final size:15
Alignment explanation
Indices: 913033--913061 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
913023 CAAATCGAAG
913033 AAATATTTTATTTTT
1 AAATATTTTATTTTT
913048 AAAT-TTTTATTTTT
1 AAATATTTTATTTTT
913062 CCAAATAACT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
AAATATTTTATTTTT
Found at i:914193 original size:13 final size:13
Alignment explanation
Indices: 914177--914218 Score: 59
Period size: 13 Copynumber: 3.2 Consensus size: 13
914167 AGAGATAATT
*
914177 AAAAGTTAATAAA
1 AAAAGATAATAAA
914190 AAAAGATAATAATA
1 AAAAGATAATAA-A
914204 AAAA-ATAATAAA
1 AAAAGATAATAAA
914216 AAA
1 AAA
914219 TAAATAAAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
12 4 0.15
13 18 0.67
14 5 0.19
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (13 bp):
AAAAGATAATAAA
Found at i:914210 original size:10 final size:10
Alignment explanation
Indices: 914197--914236 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
914187 AAAAAAAGAT
914197 AATAATAAAA
1 AATAATAAAA
914207 AATAATAAAA
1 AATAATAAAA
*
914217 AATAAATAAAG
1 AAT-AATAAAA
914228 AA-AATAAAA
1 AATAATAAAA
914237 CGAATAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
9 6 0.22
10 13 0.48
11 8 0.30
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (10 bp):
AATAATAAAA
Found at i:914216 original size:23 final size:22
Alignment explanation
Indices: 914184--914252 Score: 70
Period size: 23 Copynumber: 3.1 Consensus size: 22
914174 ATTAAAAGTT
*
914184 AATAAAAAAAGATAATAATAAAA
1 AATAATAAAAGATAA-AATAAAA
* *
914207 AATAATAAAAAAT-AAATAAAG
1 AATAATAAAAGATAAAATAAAA
914228 AA-AATAAAACGAATAAAATAAAA
1 AATAATAAAA-G-ATAAAATAAAA
914251 AA
1 AA
914253 AGTAAGAGAG
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
20 7 0.18
21 8 0.21
22 3 0.08
23 20 0.53
ACGTcount: A:0.78, C:0.01, G:0.04, T:0.16
Consensus pattern (22 bp):
AATAATAAAAGATAAAATAAAA
Found at i:916141 original size:106 final size:106
Alignment explanation
Indices: 915955--917262 Score: 1950
Period size: 106 Copynumber: 12.4 Consensus size: 106
915945 GCATTGTTCT
* * * * *
915955 GAGTCCAATATCCTCCG-TCGTGAAGTTAAAATTGGCTATGGAATCGGGAAATTGTTTATTGACA
1 GAGTCCAATATCCTTCGCT-GTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACA
* * * *
916019 ACCAACCGTCCTTTCGTTGTGAAGTTGAACTTGCGTTGTCTG
65 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
916061 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
* * *
916126 CCAGTGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
916167 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTATTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
*
916232 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * * *
916273 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
*
916338 CCAGTGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
916379 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
* * *
916444 CCAGCGGTCCCTTTGTCATGAAGTTGAACTTGAGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * * *
916485 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
*
916550 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGCTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
916591 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
*
916656 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
916697 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTAGCTCTGAAATTGGAAAATTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
*
916762 CCAGCGGTCCCTTCGTCGTGAAGTTGAACATGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * * *
916803 GAGTCTAATATCCTTCGTTTTGAAGTTGAAATTGACTCTG-AA-T--GAAA-T-TTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
* * * *
916862 TCAGCCG-CCCATTCGTCGTGAAGTTGAGCTTGTGTTGTCTTG
66 CCAGCGGTCCC-TTCGTCGTGAAGTTGAACTTGCGTTGTC-TG
* * * *
916904 G-GTCCAAGATCCTTCGCTGAGAAGTTGAAATTGGCTCTGAAATTAGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
* *
916968 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
917009 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
917074 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
917115 GAGTCCAATATCTTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGAAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
*
917180 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * * * *
917221 GAGTTCAATTTTCTTCGCTGCGAAGTTGAAATAGACTCTGAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAA
917263 TGAAGTTGGA
Statistics
Matches: 1093, Mismatches: 98, Indels: 22
0.90 0.08 0.02
Matches are distributed among these distances:
99 3 0.00
100 73 0.07
101 6 0.01
102 4 0.00
104 4 0.00
105 5 0.00
106 994 0.91
107 4 0.00
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (106 bp):
GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
Found at i:921200 original size:13 final size:10
Alignment explanation
Indices: 921164--921203 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
921154 AAAAAAAGAT
921164 AATAATAAAA
1 AATAATAAAA
921174 AATAATAAAA
1 AATAATAAAA
921184 AATAA-ATAAA
1 AATAATA-AAA
*
921194 GATAATAAAA
1 AATAATAAAA
921204 CGAATAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
9 1 0.04
10 25 0.93
11 1 0.04
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.20
Consensus pattern (10 bp):
AATAATAAAA
Found at i:928704 original size:28 final size:28
Alignment explanation
Indices: 928661--928741 Score: 119
Period size: 28 Copynumber: 2.9 Consensus size: 28
928651 GAAGGACCAC
*
928661 TATGTCCCGAAAGACCACATAGAACACA
1 TATGTCCTGAAAGACCACATAGAACACA
*
928689 TATGTCCTGAATGACCACATAGAACACA
1 TATGTCCTGAAAGACCACATAGAACACA
*
928717 TATGT-CTCGAAGGACCACATAGAAC
1 TATGTCCT-GAAAGACCACATAGAAC
928742 CCTCGACTCT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
27 2 0.04
28 47 0.96
ACGTcount: A:0.40, C:0.26, G:0.16, T:0.19
Consensus pattern (28 bp):
TATGTCCTGAAAGACCACATAGAACACA
Found at i:935928 original size:16 final size:16
Alignment explanation
Indices: 935904--935937 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
935894 TATCGCCGAC
*
935904 CGAATTTCACTATTCA
1 CGAAATTCACTATTCA
935920 CGAAATTCACTATTCA
1 CGAAATTCACTATTCA
935936 CG
1 CG
935938 TGAATAGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.26, G:0.09, T:0.32
Consensus pattern (16 bp):
CGAAATTCACTATTCA
Found at i:937856 original size:21 final size:21
Alignment explanation
Indices: 937830--937876 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
937820 GCTTTATCTT
937830 CATAGAAATATCTATTCCTTG
1 CATAGAAATATCTATTCCTTG
937851 CATAGAAATATCTATTCCTTG
1 CATAGAAATATCTATTCCTTG
937872 CATAG
1 CATAG
937877 GCCATTGATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (21 bp):
CATAGAAATATCTATTCCTTG
Found at i:939150 original size:37 final size:38
Alignment explanation
Indices: 939080--939153 Score: 123
Period size: 38 Copynumber: 2.0 Consensus size: 38
939070 AACCCAAACC
*
939080 CGACCCGAATATCACACTTAAAAAAACCAGACCCGACT
1 CGACCCAAATATCACACTTAAAAAAACCAGACCCGACT
*
939118 CGACCCAAATATCACACTT-AAAAAACCCGACCCGAC
1 CGACCCAAATATCACACTTAAAAAAACCAGACCCGAC
939154 CCGAACAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
37 16 0.47
38 18 0.53
ACGTcount: A:0.42, C:0.36, G:0.09, T:0.12
Consensus pattern (38 bp):
CGACCCAAATATCACACTTAAAAAAACCAGACCCGACT
Found at i:939165 original size:37 final size:38
Alignment explanation
Indices: 939087--939165 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 38
939077 ACCCGACCCG
* * *
939087 AATATCACACTTAAAAAAACCAGACCCGACTCGACCCA
1 AATATCACACTTAAAAAAACCAGACCCGACCCGAACAA
*
939125 AATATCACACTT-AAAAAACCCGACCCGACCCGAACAA
1 AATATCACACTTAAAAAAACCAGACCCGACCCGAACAA
939162 AATA
1 AATA
939166 AATTTTCACC
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
37 25 0.68
38 12 0.32
ACGTcount: A:0.47, C:0.33, G:0.08, T:0.13
Consensus pattern (38 bp):
AATATCACACTTAAAAAAACCAGACCCGACCCGAACAA
Found at i:946986 original size:182 final size:175
Alignment explanation
Indices: 946654--947013 Score: 513
Period size: 182 Copynumber: 2.0 Consensus size: 175
946644 TATCCTTTAT
* * * *
946654 CTGTTTATATTTATTCTTTCTCGATATGGATGACTTGCTCTGATGTTAGTGGAATTCATTCTTGG
1 CTGTTTATATTTATTCTTTCTCGATATAGATGACGTGCTCTGATGTTAATGAAATTCATTCTTGG
*
946719 CGATGTGGTTTCTGGAAAGTTTACCAAGTTTTATACAACCATTATGTACTTCTGTATGCTTTAGG
66 CGATGTGGTTTCTGGAAAGTTTACCAAGTTGTATACAACCATTATGTACTTCTGTATGCTTTAGG
* *
946784 CTAGTGCTTGATAGTTACATCAAATGGTTCTCAATGAAAGTATAA
131 CTAGTGCTTCATAGTTACATCAAATGGTTCTCAATGAAAGCATAA
*
946829 CTGTTTATATTTCTTCTTTCTCGATATAGATGACGTGCTCTGATGTTAATGAAATTCATTCTTGG
1 CTGTTTATATTTATTCTTTCTCGATATAGATGACGTGCTCTGATGTTAATGAAATTCATTCTTGG
* * *** *
946894 CCATGTGTGTGTGTGTTTTTTTTAAGTTTACCAAGTTGTATATAACCATTATGTACTTCTGTATG
66 -C----G-ATGTG-GTTTCTGGAAAGTTTACCAAGTTGTATACAACCATTATGTACTTCTGTATG
* *
946959 CTTTAGGCTATTGCTTCATATTTACATCAAATGGTTCTCAATGAAAGCATAA
124 CTTTAGGCTAGTGCTTCATAGTTACATCAAATGGTTCTCAATGAAAGCATAA
947011 CTG
1 CTG
947014 ATTAGAAAGT
Statistics
Matches: 162, Mismatches: 16, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
175 60 0.37
176 1 0.01
180 1 0.01
181 4 0.02
182 96 0.59
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.42
Consensus pattern (175 bp):
CTGTTTATATTTATTCTTTCTCGATATAGATGACGTGCTCTGATGTTAATGAAATTCATTCTTGG
CGATGTGGTTTCTGGAAAGTTTACCAAGTTGTATACAACCATTATGTACTTCTGTATGCTTTAGG
CTAGTGCTTCATAGTTACATCAAATGGTTCTCAATGAAAGCATAA
Found at i:951076 original size:23 final size:23
Alignment explanation
Indices: 951050--951097 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
951040 TTATCATGAC
*
951050 ATGTTCGTAAACGTTAAATGAAT
1 ATGTTCGTAAACGTTAAACGAAT
* *
951073 ATGTTCTTAAATGTTAAACGAAT
1 ATGTTCGTAAACGTTAAACGAAT
951096 AT
1 AT
951098 ATTTACAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.40, C:0.08, G:0.15, T:0.38
Consensus pattern (23 bp):
ATGTTCGTAAACGTTAAACGAAT
Found at i:951588 original size:20 final size:20
Alignment explanation
Indices: 951565--951609 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
951555 TGCGATTTTC
951565 CAAATTCGCAACACAGAAA-T
1 CAAATTCGCAACAC-GAAAGT
*
951585 CAAATTCGCAACGCGAAAGT
1 CAAATTCGCAACACGAAAGT
951605 CAAAT
1 CAAAT
951610 GTTTTTACGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.47, C:0.24, G:0.13, T:0.16
Consensus pattern (20 bp):
CAAATTCGCAACACGAAAGT
Done.