Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007888.1 Hibiscus syriacus cultivar Beakdansim tig00110270_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1558302
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 7
Found at i:690823 original size:1 final size:1
Alignment explanation
Indices: 690752--690815 Score: 74
Period size: 1 Copynumber: 64.0 Consensus size: 1
690742 GAAAAAAAGG
* * * * * *
690752 AAAAAAGAAAAAAAGAAAAAAAAGAAAAAAAAAGAAAAAAAAAGAAAAAAAAAGAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
690816 GGAAAAAATT
Statistics
Matches: 51, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 51 1.00
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (1 bp):
A
Found at i:690823 original size:9 final size:9
Alignment explanation
Indices: 690743--690813 Score: 92
Period size: 10 Copynumber: 7.8 Consensus size: 9
690733 GAAATGCTTG
690743 AAAAAAAG-
1 AAAAAAAGA
*
690751 GAAAAAAG-
1 AAAAAAAGA
690759 AAAAAAAGA
1 AAAAAAAGA
690768 AAAAAAAGAA
1 AAAAAAAG-A
690778 AAAAAAAGAA
1 AAAAAAAG-A
690788 AAAAAAAGAA
1 AAAAAAAG-A
690798 AAAAAAAGA
1 AAAAAAAGA
690807 AAAAAAA
1 AAAAAAA
690814 AAGGAAAAAA
Statistics
Matches: 59, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
8 14 0.24
9 16 0.27
10 29 0.49
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (9 bp):
AAAAAAAGA
Found at i:690823 original size:10 final size:10
Alignment explanation
Indices: 690759--690814 Score: 105
Period size: 10 Copynumber: 5.7 Consensus size: 10
690749 AGGAAAAAAG
690759 AAAAAAAG-A
1 AAAAAAAGAA
690768 AAAAAAAGAA
1 AAAAAAAGAA
690778 AAAAAAAGAA
1 AAAAAAAGAA
690788 AAAAAAAGAA
1 AAAAAAAGAA
690798 AAAAAAAGAA
1 AAAAAAAGAA
690808 AAAAAAA
1 AAAAAAA
690815 AGGAAAAAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
9 8 0.17
10 38 0.83
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:694116 original size:75 final size:75
Alignment explanation
Indices: 693962--694138 Score: 169
Period size: 75 Copynumber: 2.4 Consensus size: 75
693952 CAACAAAAAG
* ** *
693962 CAAATGCTGGGGCATACTGAAAGCCCATTTCAATTAGAAAGAAGAATGTTGACTCATTTTGAACG
1 CAAATGCTGGGACATACTGAAAGCCCATTTCAAGCAGAAACAAGAATGTTGACTCATTTTGAACG
** *
694027 TTTGTATCAG
66 TTCATATCAA
* * * * * *
694037 CAAATGTTGGGACATTCTGAAAGCCCATTTCAAGCAGAATCAGGAATGTTGA-TGTATTTTGAAT
1 CAAATGCTGGGACATACTGAAAGCCCATTTCAAGCAGAAACAAGAATGTTGACT-CATTTTGAAC
*
694101 GTTCATATTAA
65 GTTCATATCAA
* * *
694112 CAAAT-ATAGGGGCATACTGAAGGCCCA
1 CAAATGCT-GGGACATACTGAAAGCCCA
694139 CGTCATCATG
Statistics
Matches: 82, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
74 2 0.02
75 80 0.98
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (75 bp):
CAAATGCTGGGACATACTGAAAGCCCATTTCAAGCAGAAACAAGAATGTTGACTCATTTTGAACG
TTCATATCAA
Found at i:695480 original size:22 final size:22
Alignment explanation
Indices: 695454--695501 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
695444 TTCTTTAAAA
*
695454 ATGATAGATTCTCTTTTCAAAG
1 ATGATAGATTCACTTTTCAAAG
*
695476 ATGATATATTCACTTTTCAAAG
1 ATGATAGATTCACTTTTCAAAG
695498 ATGA
1 ATGA
695502 ACGCTTTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.40
Consensus pattern (22 bp):
ATGATAGATTCACTTTTCAAAG
Found at i:696530 original size:113 final size:114
Alignment explanation
Indices: 696331--696632 Score: 438
Period size: 113 Copynumber: 2.7 Consensus size: 114
696321 CAGCATTTCC
*
696331 AGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACT
1 AGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAACT
* * *
696396 TGTTCAACTTTTTTCTCGAATTCATCACTTGATGGATCAGTA-TTAT-CAG
66 TGTTCAACCTTTTGCTCGAATTCATCACTCGATGGATCA--ACTTATCCAG
* *
696445 -GTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGG-AGTAAGAAATTGATAATGAGAAGAAT
1 AGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAG-AAGAAATTCATAATGAGAAGAAC
* *
696508 TTGTTCAACCTTTTGCTTGAATTCATCACTCGATGGATCAACTTTTCCAG
65 TTGTTCAACCTTTTGCTCGAATTCATCACTCGATGGATCAACTTATCCAG
*
696558 AGGA-AGTTCATAATGAGAAGAACTCATCTGAAG-AGGAAGAA-AAAGTTCATAATGAGAAGAAC
1 AGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAA-TTCATAATGAGAAGAAC
696620 TTGTTCAACCTTT
65 TTGTTCAACCTTT
696633 GCATGACTCT
Statistics
Matches: 171, Mismatches: 11, Indels: 14
0.87 0.06 0.07
Matches are distributed among these distances:
111 4 0.02
112 38 0.22
113 127 0.74
114 2 0.01
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (114 bp):
AGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAACT
TGTTCAACCTTTTGCTCGAATTCATCACTCGATGGATCAACTTATCCAG
Found at i:696997 original size:3 final size:3
Alignment explanation
Indices: 696983--697043 Score: 72
Period size: 3 Copynumber: 21.0 Consensus size: 3
696973 TATCCCGATT
* * * *
696983 TTA TTA TT- TTA TTA TTA TAA TAA TTA TTA TAA TAA TTA TTA TT- TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
697029 TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA
697044 AATAATTTTT
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
2 4 0.08
3 48 0.92
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:697524 original size:10 final size:10
Alignment explanation
Indices: 697509--697537 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
697499 ACGAGCAGAC
697509 AGAACAACCG
1 AGAACAACCG
697519 AGAACAACCG
1 AGAACAACCG
697529 AGAACAACC
1 AGAACAACC
697538 ACAACCAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.52, C:0.31, G:0.17, T:0.00
Consensus pattern (10 bp):
AGAACAACCG
Found at i:697546 original size:20 final size:18
Alignment explanation
Indices: 697508--697565 Score: 55
Period size: 20 Copynumber: 3.0 Consensus size: 18
697498 CACGAGCAGA
*
697508 CAGAACAACCGAGAACAAC
1 CAGAACAACC-ACAACAAC
697527 CGAGAACAACCACAACCAA-
1 C-AGAACAACCACAA-CAAC
697546 CAGAACAATCCACAAACAAC
1 CAGAACAA-CCAC-AACAAC
697566 AAAAAAAAGA
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
18 7 0.21
19 12 0.36
20 14 0.42
ACGTcount: A:0.53, C:0.34, G:0.10, T:0.02
Consensus pattern (18 bp):
CAGAACAACCACAACAAC
Found at i:697560 original size:19 final size:18
Alignment explanation
Indices: 697507--697566 Score: 59
Period size: 19 Copynumber: 3.2 Consensus size: 18
697497 ACACGAGCAG
*
697507 ACAGAACAACCGA-GAACA
1 ACAGAACAACC-ACAAACA
*
697525 ACCGAGAACAACCACAACCA
1 A-C-AGAACAACCACAAACA
697545 ACAGAACAATCCACAAACA
1 ACAGAACAA-CCACAAACA
697564 ACA
1 ACA
697567 AAAAAAAGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
18 8 0.23
19 14 0.40
20 13 0.37
ACGTcount: A:0.55, C:0.33, G:0.10, T:0.02
Consensus pattern (18 bp):
ACAGAACAACCACAAACA
Found at i:698603 original size:21 final size:22
Alignment explanation
Indices: 698549--698605 Score: 57
Period size: 21 Copynumber: 2.6 Consensus size: 22
698539 CATTTTCTGA
*
698549 TATTTTTAAATAAATAAATATTT
1 TATTTTT-AATAAATAAATATTC
*
698572 TATTTTT-ATAAAT-TATA-TC
1 TATTTTTAATAAATAAATATTC
698591 TATTTTTAGATAAAT
1 TATTTTTA-ATAAAT
698606 GTTTTACTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
19 8 0.27
20 3 0.10
21 12 0.40
23 7 0.23
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (22 bp):
TATTTTTAATAAATAAATATTC
Found at i:709571 original size:111 final size:111
Alignment explanation
Indices: 709347--709559 Score: 297
Period size: 111 Copynumber: 1.9 Consensus size: 111
709337 CCAAGAAGTT
* * *
709347 AATAATATATATATATAATAAAGTTGAGCTATTATTCTAAAGCAATTGGTTATAAAGCTCTGACT
1 AATAATATATATATACAATAAAGCTGAGCTATTATTCTAAAGCAATTGGTTAAAAAGCTCTGACT
*
709412 TTACTAATAGATTCCTTCACTAGCCAAATAAAGGCAAATATAATTA
66 TTACTAATAGATTCCTTCACTAGCCAAACAAAGGCAAATATAATTA
* * *
709458 AATAATATATATATACAATAAAGCTGAGTTATTCCTT-TAAAGCAATTGGTTAAAAATC-CTGAC
1 AATAATATATATATACAATAAAGCTGAGCTATT-ATTCTAAAGCAATTGGTTAAAAAGCTCTGAC
* *
709521 TTTA-TGGATAGATTCCTTCATCTAGCCGAACAAAGGCAA
65 TTTACT-AATAGATTCCTTCA-CTAGCCAAACAAAGGCAA
709560 CTTAAATTAA
Statistics
Matches: 90, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
109 1 0.01
110 22 0.24
111 65 0.72
112 2 0.02
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.33
Consensus pattern (111 bp):
AATAATATATATATACAATAAAGCTGAGCTATTATTCTAAAGCAATTGGTTAAAAAGCTCTGACT
TTACTAATAGATTCCTTCACTAGCCAAACAAAGGCAAATATAATTA
Found at i:710352 original size:26 final size:26
Alignment explanation
Indices: 710317--710382 Score: 116
Period size: 26 Copynumber: 2.6 Consensus size: 26
710307 ATTCTTATGT
710317 GAAGA-AATGAAGATGAACAAATCAA
1 GAAGAGAATGAAGATGAACAAATCAA
710342 GAAGAGAATGAAGATGAACAAATCAA
1 GAAGAGAATGAAGATGAACAAATCAA
*
710368 GCAGAGAATGAAGAT
1 GAAGAGAATGAAGAT
710383 TGCTCATGCG
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
25 5 0.13
26 34 0.87
ACGTcount: A:0.56, C:0.08, G:0.24, T:0.12
Consensus pattern (26 bp):
GAAGAGAATGAAGATGAACAAATCAA
Found at i:712639 original size:31 final size:31
Alignment explanation
Indices: 712604--712664 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
712594 TTAACAGTGT
712604 GGATGGTGAAGATTCCTTGTAACTCTGGTAC
1 GGATGGTGAAGATTCCTTGTAACTCTGGTAC
712635 GGATGGTGAAGATTCCTTGTAACTCTGGTA
1 GGATGGTGAAGATTCCTTGTAACTCTGGTA
712665 TAGAAGGAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.33
Consensus pattern (31 bp):
GGATGGTGAAGATTCCTTGTAACTCTGGTAC
Found at i:715556 original size:31 final size:30
Alignment explanation
Indices: 715490--715638 Score: 192
Period size: 31 Copynumber: 4.8 Consensus size: 30
715480 TTGTCATTTC
*
715490 CAATACTAGTGGTTTGAGCATTATT-ACATT
1 CAATACTAGT-GATTGAGCATTATTAACATT
* *
715520 TAATACTAGTGAACTGAGCATTATTAACATT
1 CAATACTAGTG-ATTGAGCATTATTAACATT
* * *
715551 CAATACTAGTGAATTGAGCATTATCAATAAT
1 CAATACTAGTG-ATTGAGCATTATTAACATT
715582 CAATACTAGTTGATTGAGCATTATTAACATT
1 CAATACTAG-TGATTGAGCATTATTAACATT
715613 CAATACTAGTTGATTGAGCATTATTA
1 CAATACTAG-TGATTGAGCATTATTA
715639 TCAATATTGA
Statistics
Matches: 105, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
29 1 0.01
30 20 0.19
31 82 0.78
32 2 0.02
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.37
Consensus pattern (30 bp):
CAATACTAGTGATTGAGCATTATTAACATT
Found at i:717121 original size:158 final size:157
Alignment explanation
Indices: 716834--717148 Score: 621
Period size: 158 Copynumber: 2.0 Consensus size: 157
716824 GATACTTCAG
716834 TAAGCGTTTAAGAGCAATCCAGTATCACCACTTGGATTATGAGTATATCTACTCAGTCTACTCAA
1 TAAGCGTTTAAGAGCAATCCAGTATCACCACTTGGATTATGAGTATATCTACTCAGTCTACTCAA
716899 AGTATAAGCAACATCAGGCCGAGTATAGTCATTAAGAACATTAAGCTTCCGATTAATTTAGCATA
66 AGTATAAGCAACATCAGGCCGAGTATAGTCATTAAGAACATTAAGCTTCCGATTAATTTAGCATA
716964 TTCTGTTTGGGAAACGCTACTTCCTTT
131 TTCTGTTTGGGAAACGCTACTTCCTTT
716991 TAAGCGTTTAAGAGCAATCCAGTATTCACCACTTGGATTATGAGTATATCTACTCAGTCTACTCA
1 TAAGCGTTTAAGAGCAATCCAGTA-TCACCACTTGGATTATGAGTATATCTACTCAGTCTACTCA
717056 AAGTATAAGCAACATCAGGCCGAGTATAGTCATTAAGAACATTAAGCTTCCGATTAATTTAGCAT
65 AAGTATAAGCAACATCAGGCCGAGTATAGTCATTAAGAACATTAAGCTTCCGATTAATTTAGCAT
717121 ATTCTGTTTGGGAAACGCTACTTCCTTT
130 ATTCTGTTTGGGAAACGCTACTTCCTTT
717149 ATTCTTAAAG
Statistics
Matches: 157, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
157 24 0.15
158 133 0.85
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.32
Consensus pattern (157 bp):
TAAGCGTTTAAGAGCAATCCAGTATCACCACTTGGATTATGAGTATATCTACTCAGTCTACTCAA
AGTATAAGCAACATCAGGCCGAGTATAGTCATTAAGAACATTAAGCTTCCGATTAATTTAGCATA
TTCTGTTTGGGAAACGCTACTTCCTTT
Found at i:720864 original size:31 final size:30
Alignment explanation
Indices: 720768--720975 Score: 267
Period size: 31 Copynumber: 6.8 Consensus size: 30
720758 TTGTCATTTC
*
720768 CAATACTAGTGGTTTGAGCATTATT-ACATT
1 CAATACTAGT-GATTGAGCATTATTAACATT
* *
720798 TAATACTAGTGGTTTGAGCATTATT-ACATT
1 CAATACTAGT-GATTGAGCATTATTAACATT
*
720828 TAATACTAGTGAATTGAGCATTATTAACATT
1 CAATACTAGTG-ATTGAGCATTATTAACATT
* *
720859 CAATACTAGTGAATTGAGCATTATCAATATT
1 CAATACTAGTG-ATTGAGCATTATTAACATT
*
720890 CAATACTAGTTGATTGAGCATTATTAAAATT
1 CAATACTAG-TGATTGAGCATTATTAACATT
*
720921 CAATACTAGTTGATTGAGCATTATTAAAATT
1 CAATACTAG-TGATTGAGCATTATTAACATT
720952 CAATACTAGTTGATTGAGCATTAT
1 CAATACTAG-TGATTGAGCATTAT
720976 CATTATCAAC
Statistics
Matches: 168, Mismatches: 7, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
29 1 0.01
30 51 0.30
31 114 0.68
32 2 0.01
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.39
Consensus pattern (30 bp):
CAATACTAGTGATTGAGCATTATTAACATT
Found at i:725313 original size:2 final size:2
Alignment explanation
Indices: 725306--725360 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
725296 TCTCTTATGT
725306 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
725348 TA TA TA TA TA TA T
1 TA TA TA TA TA TA T
725361 CATGTAACAT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:725485 original size:20 final size:20
Alignment explanation
Indices: 725444--725482 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
725434 TCACATAGGG
*
725444 ATATGCACTTAACATCTAAC
1 ATATGCACTTAACATATAAC
*
725464 ATATGCATTTAATCATATA
1 ATATGCACTTAA-CATATA
725483 CATCTAGCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.41, C:0.18, G:0.05, T:0.36
Consensus pattern (20 bp):
ATATGCACTTAACATATAAC
Found at i:728566 original size:16 final size:16
Alignment explanation
Indices: 728545--728582 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
728535 ATCGCATTTT
728545 TAAATTTTTTCAAATA
1 TAAATTTTTTCAAATA
**
728561 TAAATTTTTTTTAATA
1 TAAATTTTTTCAAATA
728577 TAAATT
1 TAAATT
728583 CGCATACTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (16 bp):
TAAATTTTTTCAAATA
Found at i:730877 original size:12 final size:12
Alignment explanation
Indices: 730859--730888 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
730849 TTCTTCTAAA
730859 ATTTATTTTTAT
1 ATTTATTTTTAT
*
730871 TTTTATTTTTAT
1 ATTTATTTTTAT
730883 ATTTAT
1 ATTTAT
730889 CTTATTAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (12 bp):
ATTTATTTTTAT
Found at i:731492 original size:280 final size:281
Alignment explanation
Indices: 730948--731508 Score: 970
Period size: 278 Copynumber: 2.0 Consensus size: 281
730938 ATTGTGATAT
*
730948 CGACTGTTAACATCTTTATCATATTGATCATGTTTATTTTTGGATAATCCTCAAGGGAACTGCAG
1 CGACTGTTAACATCTTTATCATATTGATCATGTTTATTTTTGGATAATCCTCAAGGAAACTGCAG
731013 TTTAGTATTTAGTTGAGTTGACGGGACAGCTTGAGCCTACTTGGCTGGTCCCCAACATTGATGAA
66 TTTAGTATTTAGTTGAGTTGACGGGACAGCTTGAGCCTACTTGGCTGGTCCCCAACATTGATGAA
731078 CATGATACGTGCCATCCAGCTCATACTCCCTGGAATTCCTCACTCAATAATAATCCATTTTAGCA
131 CATGATACGTGCCATCCAGCTCATACTCCCTGGAATTCCTCACTCAATAATAATCCATTTTAGCA
* *
731143 TTTTGTTAGCATGAATTTTTTTAAATTAGGAGAATTAAAATTTAATTTCAATACGTTCTCATGTT
196 TTTTGTTAGCATCAATTTTTTGAAATTAGGAGAATTAAAATTTAATTTCAATACGTTCTCATGTT
*
731208 TGG-TTCAAGTTTTCAAGAGA
261 TGGTTTAAAGTTTTCAAGAGA
*
731228 CGACTGTTAACATC-TTATCATA-TGATCA-GTTTATTTTTGGGTAATCCTCAAGAGAAACTGCA
1 CGACTGTTAACATCTTTATCATATTGATCATGTTTATTTTTGGATAATCCTCAAG-GAAACTGCA
*
731290 GTTTAGTATTTAGTTGAGTTGATGGGACAGCTTGAGCCTACTTGGCTGGTCCCCAACATTGATGA
65 GTTTAGTATTTAGTTGAGTTGACGGGACAGCTTGAGCCTACTTGGCTGGTCCCCAACATTGATGA
*
731355 ACATGATACGTGCCATCCAGCTCATACTCCCTGGAATTCCTCACTCAATAAGATAATTCATTTTA
130 ACATGATACGTGCCATCCAGCTCATACTCCCTGGAATTCCTCACTCAAT-A-ATAATCCATTTTA
*
731420 GCATTTTGTTAGCATCAATTTTTTGAAATTAGGAGAATTAAAATTTAATTTC-ATCACTTTCTCA
193 GCATTTTGTTAGCATCAATTTTTTGAAATTAGGAGAATTAAAATTTAATTTCAAT-ACGTTCTCA
*
731484 TGTTTGGTTTAAATTTTTCAAGAGA
257 TGTTTGGTTTAAAGTTTTCAAGAGA
731509 ATTAAAATCT
Statistics
Matches: 267, Mismatches: 9, Indels: 9
0.94 0.03 0.03
Matches are distributed among these distances:
277 23 0.09
278 127 0.48
279 11 0.04
280 91 0.34
281 15 0.06
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.37
Consensus pattern (281 bp):
CGACTGTTAACATCTTTATCATATTGATCATGTTTATTTTTGGATAATCCTCAAGGAAACTGCAG
TTTAGTATTTAGTTGAGTTGACGGGACAGCTTGAGCCTACTTGGCTGGTCCCCAACATTGATGAA
CATGATACGTGCCATCCAGCTCATACTCCCTGGAATTCCTCACTCAATAATAATCCATTTTAGCA
TTTTGTTAGCATCAATTTTTTGAAATTAGGAGAATTAAAATTTAATTTCAATACGTTCTCATGTT
TGGTTTAAAGTTTTCAAGAGA
Found at i:731610 original size:14 final size:14
Alignment explanation
Indices: 731591--731617 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
731581 AGTTGGATAG
731591 TAATTTTAAATTAC
1 TAATTTTAAATTAC
731605 TAATTTTAAATTA
1 TAATTTTAAATTA
731618 GTTTACCTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (14 bp):
TAATTTTAAATTAC
Found at i:735552 original size:21 final size:22
Alignment explanation
Indices: 735527--735571 Score: 74
Period size: 21 Copynumber: 2.1 Consensus size: 22
735517 CATTATCTTT
735527 TAAATTTTATAAAAAAT-TATA
1 TAAATTTTATAAAAAATGTATA
*
735548 TAAATTTTATTAAAAATGTATA
1 TAAATTTTATAAAAAATGTATA
735570 TA
1 TA
735572 TTAAAAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (22 bp):
TAAATTTTATAAAAAATGTATA
Found at i:741654 original size:14 final size:14
Alignment explanation
Indices: 741632--741678 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
741622 TGCAAAAGAA
*
741632 AATTAATATAGTTT
1 AATTTATATAGTTT
741646 AATTTATATA----
1 AATTTATATAGTTT
741656 AA-TTATATAGTTT
1 AATTTATATAGTTT
741669 AATTTATATA
1 AATTTATATA
741679 AAGAAAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 10
0.71 0.03 0.26
Matches are distributed among these distances:
9 7 0.26
10 2 0.07
13 2 0.07
14 16 0.59
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (14 bp):
AATTTATATAGTTT
Found at i:741665 original size:23 final size:24
Alignment explanation
Indices: 741631--741680 Score: 93
Period size: 23 Copynumber: 2.1 Consensus size: 24
741621 ATGCAAAAGA
741631 AAATTAATATAGTTTAATTTATAT
1 AAATTAATATAGTTTAATTTATAT
741655 AAATT-ATATAGTTTAATTTATAT
1 AAATTAATATAGTTTAATTTATAT
741678 AAA
1 AAA
741681 GAAAAAATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 21 0.81
24 5 0.19
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (24 bp):
AAATTAATATAGTTTAATTTATAT
Found at i:743624 original size:2 final size:2
Alignment explanation
Indices: 743617--743662 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
743607 AGTAACAAAC
*
743617 AT AT AT AT CT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
743659 AT AT
1 AT AT
743663 GTATTGTATT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:749006 original size:22 final size:22
Alignment explanation
Indices: 748981--749026 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
748971 GATTACAAAT
748981 AGGGAACCGATTCCCCTGCTAC
1 AGGGAACCGATTCCCCTGCTAC
749003 AGGGAACCGATTCCCCTGCTAC
1 AGGGAACCGATTCCCCTGCTAC
749025 AG
1 AG
749027 CACTTCCGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.24, C:0.35, G:0.24, T:0.17
Consensus pattern (22 bp):
AGGGAACCGATTCCCCTGCTAC
Found at i:757729 original size:23 final size:21
Alignment explanation
Indices: 757677--757738 Score: 81
Period size: 23 Copynumber: 2.9 Consensus size: 21
757667 TTTTGGTGCA
*
757677 GAGGGAATCGA-TCCCCCCTT
1 GAGGGAACCGATTCCCCCCTT
*
757697 GAGGGAACCGATTCCCCCTTT
1 GAGGGAACCGATTCCCCCCTT
757718 GAAGGGGAACCGATTCCCCCC
1 G-A-GGGAACCGATTCCCCCC
757739 ACAGGGGAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
20 10 0.28
21 9 0.25
22 1 0.03
23 16 0.44
ACGTcount: A:0.21, C:0.35, G:0.26, T:0.18
Consensus pattern (21 bp):
GAGGGAACCGATTCCCCCCTT
Found at i:757764 original size:20 final size:20
Alignment explanation
Indices: 757679--757764 Score: 66
Period size: 21 Copynumber: 4.1 Consensus size: 20
757669 TTGGTGCAGA
* *
757679 GGGAATCGA-TCCCCCCTTG
1 GGGAACCGATTCCCCCCTAG
*
757698 AGGGAACCGATTCCCCCTTTGAAG
1 -GGGAACCGATTCCCCC-CT--AG
*
757722 GGGAACCGATTCCCCCCACAG
1 GGGAACCGATTCCCCCC-TAG
* *
757743 GGGAATCGATACCCCCCTAG
1 GGGAACCGATTCCCCCCTAG
757763 GG
1 GG
757765 TTCTGGTTTT
Statistics
Matches: 53, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
20 12 0.23
21 23 0.43
22 1 0.02
23 16 0.30
24 1 0.02
ACGTcount: A:0.22, C:0.35, G:0.27, T:0.16
Consensus pattern (20 bp):
GGGAACCGATTCCCCCCTAG
Found at i:763471 original size:13 final size:13
Alignment explanation
Indices: 763453--763483 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
763443 CGACCTGTTT
*
763453 ACCCGTTGACCCG
1 ACCCGTTGACCCA
763466 ACCCGTTGACCCA
1 ACCCGTTGACCCA
763479 ACCCG
1 ACCCG
763484 ACCCATTGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.19, C:0.48, G:0.19, T:0.13
Consensus pattern (13 bp):
ACCCGTTGACCCA
Found at i:763563 original size:29 final size:29
Alignment explanation
Indices: 763502--763577 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 29
763492 ACCGTTGACC
* ** *
763502 GGTGTTATTCTGGGAATTAATTCAGTTTT
1 GGTGCTATTCTGGGAATTAATTCAGAATG
763531 GGTGCTATTCTGGGAATTAATTC-GAAATG
1 GGTGCTATTCTGGGAATTAATTCAG-AATG
* *
763560 GGTGCTATTTTGGTAATT
1 GGTGCTATTCTGGGAATT
763578 TTTTTAAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
28 1 0.03
29 39 0.98
ACGTcount: A:0.22, C:0.08, G:0.26, T:0.43
Consensus pattern (29 bp):
GGTGCTATTCTGGGAATTAATTCAGAATG
Found at i:770777 original size:29 final size:29
Alignment explanation
Indices: 770716--770791 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
770706 ATCGTTGACT
**** *
770716 GGTGCTATTCTGGGAATTAATTCGGGTTT
1 GGTGCTATTCTGGGAATTAATTCAAAATC
770745 GGTGCTATTCTGGGAATTAATTCAAAATC
1 GGTGCTATTCTGGGAATTAATTCAAAATC
* *
770774 GGTGCTATTTTGGTAATT
1 GGTGCTATTCTGGGAATT
770792 TTTAAAAAAG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.22, C:0.11, G:0.26, T:0.41
Consensus pattern (29 bp):
GGTGCTATTCTGGGAATTAATTCAAAATC
Found at i:773892 original size:7 final size:7
Alignment explanation
Indices: 773880--773910 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
773870 AAGGCAACAA
773880 CAGGCAG
1 CAGGCAG
773887 CAGGCAG
1 CAGGCAG
773894 CAGGCAG
1 CAGGCAG
773901 CAGGCAG
1 CAGGCAG
773908 CAG
1 CAG
773911 CAAAAACAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.42, T:0.00
Consensus pattern (7 bp):
CAGGCAG
Found at i:775037 original size:14 final size:13
Alignment explanation
Indices: 775008--775120 Score: 83
Period size: 14 Copynumber: 8.5 Consensus size: 13
774998 CATCCCTATA
*
775008 TAATTTTTATTAAT
1 TAATATTTA-TAAT
775022 TAACTATTTATAAT
1 TAA-TATTTATAAT
775036 TAATATTATAATAAT
1 TAATATT-T-ATAAT
775051 T-ATATATTATAAT
1 TAATAT-TTATAAT
*
775064 TAATATTAAT-AT
1 TAATATTTATAAT
775076 TAA-A-TTAT-AT
1 TAATATTTATAAT
* *
775086 TAATATAATATAGT
1 TAATAT-TTATAAT
*
775100 TTATAATTTATAAT
1 TAAT-ATTTATAAT
775114 TAATATT
1 TAATATT
775121 AATATAAAAT
Statistics
Matches: 80, Mismatches: 9, Indels: 21
0.73 0.08 0.19
Matches are distributed among these distances:
10 8 0.10
11 2 0.03
12 5 0.06
13 19 0.24
14 32 0.40
15 14 0.17
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.52
Consensus pattern (13 bp):
TAATATTTATAAT
Found at i:775059 original size:16 final size:15
Alignment explanation
Indices: 775018--775121 Score: 67
Period size: 16 Copynumber: 6.8 Consensus size: 15
775008 TAATTTTTAT
775018 TAATTAACTATT-T-A
1 TAATTAA-TATTATAA
775032 TAATTAATATTATAA
1 TAATTAATATTATAA
775047 TAATTATATATTATAA
1 TAATTA-ATATTATAA
775063 TTAATATTAATATTA-AA
1 -T-A-ATTAATATTATAA
*
775080 TTATATTAATATAAT-A
1 -TA-ATTAATATTATAA
* *
775096 TAGTTTATAATT-T-A
1 TAATTAAT-ATTATAA
775110 TAATTAATATTA
1 TAATTAATATTA
775122 ATATAAAATA
Statistics
Matches: 75, Mismatches: 6, Indels: 18
0.76 0.06 0.18
Matches are distributed among these distances:
13 7 0.09
14 20 0.27
15 11 0.15
16 21 0.28
17 5 0.07
18 7 0.09
19 4 0.05
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (15 bp):
TAATTAATATTATAA
Found at i:775071 original size:6 final size:6
Alignment explanation
Indices: 775020--775156 Score: 57
Period size: 7 Copynumber: 21.3 Consensus size: 6
775010 ATTTTTATTA
*
775020 ATTAACT ATTTAT AATTAAT ATTATAAT AATTATAT ATT-AT AATTAAT
1 ATTAA-T ATTAAT -ATTAAT A-T-TAAT -ATTA-AT ATTAAT -ATTAAT
* * *
775068 ATTAAT ATTAA- ATT-AT ATTAAT ATAATAT AGTTTAT AATTTAT AATTAAT
1 ATTAAT ATTAAT ATTAAT ATTAAT ATTA-AT A-TTAAT -ATTAAT -ATTAAT
* * * *
775118 ATTAAT A-TAAA ATATAGT CTATAAC ATTAAT ATTAAT AT
1 ATTAAT ATTAAT AT-TAAT AT-TAAT ATTAAT ATTAAT AT
775157 AAACTATATG
Statistics
Matches: 102, Mismatches: 14, Indels: 29
0.70 0.10 0.20
Matches are distributed among these distances:
4 1 0.01
5 12 0.12
6 39 0.38
7 40 0.39
8 9 0.09
9 1 0.01
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.47
Consensus pattern (6 bp):
ATTAAT
Found at i:775085 original size:10 final size:11
Alignment explanation
Indices: 775049--775096 Score: 53
Period size: 12 Copynumber: 4.2 Consensus size: 11
775039 TATTATAATA
775049 ATTATATATTAT
1 ATTA-ATATTAT
775061 AATTAATATTAAT
1 -ATTAATATT-AT
775074 ATTAA-ATTAT
1 ATTAATATTAT
*
775084 ATTAATATAAT
1 ATTAATATTAT
775095 AT
1 AT
775097 AGTTTATAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
10 7 0.22
11 9 0.28
12 10 0.31
13 6 0.19
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (11 bp):
ATTAATATTAT
Found at i:775121 original size:34 final size:34
Alignment explanation
Indices: 775070--775152 Score: 98
Period size: 36 Copynumber: 2.4 Consensus size: 34
775060 TAATTAATAT
*
775070 TAATATTAAATTATATTAATAT-AATATAGTTTA
1 TAATATTAAATTATATTAATATAAATATAGTCTA
775103 TAAT-TTATAATTAATATTAATATAAAATATAGTCTA
1 TAATATTA-AATT-ATATTAATAT-AAATATAGTCTA
*
775139 TAACATTAATATTA
1 TAATATTAA-ATTA
775153 ATATAAACTA
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
32 3 0.07
33 8 0.19
34 10 0.24
36 15 0.36
37 6 0.14
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.46
Consensus pattern (34 bp):
TAATATTAAATTATATTAATATAAATATAGTCTA
Found at i:775163 original size:24 final size:25
Alignment explanation
Indices: 775118--775164 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
775108 TATAATTAAT
**
775118 ATTAATATAAAATATAGTCTATAAC
1 ATTAATATAAAATATAAACTATAAC
*
775143 ATTAATAT-TAATATAAACTATA
1 ATTAATATAAAATATAAACTATA
775165 TGTTATAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 11 0.58
25 8 0.42
ACGTcount: A:0.53, C:0.06, G:0.02, T:0.38
Consensus pattern (25 bp):
ATTAATATAAAATATAAACTATAAC
Found at i:775199 original size:14 final size:14
Alignment explanation
Indices: 775182--775242 Score: 54
Period size: 14 Copynumber: 4.3 Consensus size: 14
775172 AATTATTTAG
*
775182 TATAGTTTATAAAC
1 TATAGTTAATAAAC
*
775196 TATAGTTAATAAAAT
1 TATAGTTAAT-AAAC
775211 TAATA-TTAATATAA-
1 T-ATAGTTAATA-AAC
*
775225 TATAGTTTATAAAC
1 TATAGTTAATAAAC
775239 TATA
1 TATA
775243 TACTATATTA
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
13 5 0.13
14 20 0.51
15 11 0.28
16 3 0.08
ACGTcount: A:0.49, C:0.03, G:0.05, T:0.43
Consensus pattern (14 bp):
TATAGTTAATAAAC
Found at i:775277 original size:65 final size:63
Alignment explanation
Indices: 775077--775289 Score: 211
Period size: 65 Copynumber: 3.3 Consensus size: 63
775067 TATTAATATT
* *
775077 AAATT-ATATTAATATAATATAGTTTATAATTTATA-ATTAATATTAATATAAAATATAGTCTAT
1 AAATTAATATTAATATAATATAGTTTATAAATTATATACT-ATATTAATATAAAATATAGT-TA-
775140 A
63 A
* * * *
775141 ACATTAATATTAATATAAACTATA-TGTTATAAATTATTTAGTATAGTT--TATAAACTATAGTT
1 AAATTAATATTAATAT-AA-TATAGT-TTATAAATTATATACTATA-TTAATATAAAATATAGTT
775203 AATA
62 -A-A
* *
775207 AAATTAATATTAATATAATATAGTTTATAAACTATATACTATATTAATATAAATTATAGTTAA
1 AAATTAATATTAATATAATATAGTTTATAAATTATATACTATATTAATATAAAATATAGTTAA
*
775270 GATAATTAACATTAATATAA
1 -A-AATTAATATTAATATAA
775290 ACTATATAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 23
0.79 0.07 0.14
Matches are distributed among these distances:
63 3 0.02
64 26 0.21
65 43 0.34
66 33 0.26
67 17 0.13
68 4 0.03
ACGTcount: A:0.49, C:0.03, G:0.04, T:0.43
Consensus pattern (63 bp):
AAATTAATATTAATATAATATAGTTTATAAATTATATACTATATTAATATAAAATATAGTTAA
Found at i:775441 original size:24 final size:24
Alignment explanation
Indices: 775412--775469 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 24
775402 ATATATAGTT
775412 TATATA-ACATATA-AATAGATGG
1 TATATATACATATACAATAGATGG
* * *
775434 TATATATACATATACTATAGGTTG
1 TATATATACATATACAATAGATGG
775458 TATATATACATA
1 TATATATACATA
775470 GTTTATATAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
22 6 0.19
23 7 0.23
24 18 0.58
ACGTcount: A:0.45, C:0.07, G:0.10, T:0.38
Consensus pattern (24 bp):
TATATATACATATACAATAGATGG
Found at i:775605 original size:7 final size:7
Alignment explanation
Indices: 775595--775647 Score: 70
Period size: 7 Copynumber: 7.6 Consensus size: 7
775585 TATTGCTTAT
775595 GTTTAGG
1 GTTTAGG
775602 GTTTAGG
1 GTTTAGG
775609 GTTTAGG
1 GTTTAGG
775616 GTTTAGG
1 GTTTAGG
** **
775623 ACTTAAA
1 GTTTAGG
775630 GTTTAGG
1 GTTTAGG
775637 GTTTAGG
1 GTTTAGG
775644 GTTT
1 GTTT
775648 TTATAAACTA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
7 38 1.00
ACGTcount: A:0.19, C:0.02, G:0.36, T:0.43
Consensus pattern (7 bp):
GTTTAGG
Found at i:775793 original size:35 final size:36
Alignment explanation
Indices: 775753--775826 Score: 105
Period size: 37 Copynumber: 2.1 Consensus size: 36
775743 TATAGTATAC
*
775753 ATAGTTT-ATACATACATTTACTATAAGTTACATAT
1 ATAGTTTAATACATACATATACTATAAGTTACATAT
**
775788 ATAGTTTACATGTATACATATACTATAAGTTACATAT
1 ATAGTTTA-ATACATACATATACTATAAGTTACATAT
775825 AT
1 AT
775827 TAACTATTGT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
35 7 0.21
37 27 0.79
ACGTcount: A:0.41, C:0.11, G:0.07, T:0.42
Consensus pattern (36 bp):
ATAGTTTAATACATACATATACTATAAGTTACATAT
Found at i:776041 original size:2 final size:2
Alignment explanation
Indices: 776034--776182 Score: 66
Period size: 2 Copynumber: 76.0 Consensus size: 2
776024 TATTTCTTTA
*
776034 AT AT AT AT AT AT AT AT AT AT -T CT AT AT AT -T AGT -T AT AT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT
** * *
776073 AGT -T AT GC AT AC AT AT AT AT ACT AT AT -T A- AT AT AA AT -T AT
1 A-T AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT
* * * * *
776113 A- AC AT AT AA ACT AT AT AT -T TT AT AT AGT TT AT AC AT AT AT AGT
1 AT AT AT AT AT A-T AT AT AT AT AT AT AT A-T AT AT AT AT AT AT A-T
*
776156 TT AT AT AT AT AT AT AT AT AT ACT AT AT
1 AT AT AT AT AT AT AT AT AT AT A-T AT AT
776183 TAATATAAAT
Statistics
Matches: 111, Mismatches: 19, Indels: 34
0.68 0.12 0.21
Matches are distributed among these distances:
1 10 0.09
2 92 0.83
3 9 0.08
ACGTcount: A:0.44, C:0.05, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:776105 original size:68 final size:62
Alignment explanation
Indices: 776031--776183 Score: 152
Period size: 68 Copynumber: 2.4 Consensus size: 62
776021 TAGTATTTCT
776031 TTAATATATATATATATATATATTCTATATATTAGTTATATTAGTTATGCATACATATATA-TAC
1 TTAATATATATATATATATATATTCTATATATT--TTATA-TAGTT-T--ATACATATATAGT-C
776095 TATA
59 TATA
* * ** *
776099 TTAATATAAAT-TATAACATATAAACTATATATTTTATATAGTTTATACATATATAGTTTATA
1 TTAATATATATATAT-ATATATATTCTATATATTTTATATAGTTTATACATATATAGTCTATA
776161 -T-ATATATATATATATACTATATT
1 TTAATATATATATATATA-TATATT
776184 AATATAAATA
Statistics
Matches: 72, Mismatches: 9, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
60 9 0.12
61 8 0.11
62 15 0.21
63 1 0.01
64 1 0.01
65 5 0.07
66 5 0.07
67 3 0.04
68 25 0.35
ACGTcount: A:0.43, C:0.05, G:0.03, T:0.48
Consensus pattern (62 bp):
TTAATATATATATATATATATATTCTATATATTTTATATAGTTTATACATATATAGTCTATA
Found at i:776153 original size:15 final size:15
Alignment explanation
Indices: 776133--776168 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
776123 CTATATATTT
776133 TATATAGTTTATACA
1 TATATAGTTTATACA
*
776148 TATATAGTTTATATA
1 TATATAGTTTATACA
776163 TATATA
1 TATATA
776169 TATATATACT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.42, C:0.03, G:0.06, T:0.50
Consensus pattern (15 bp):
TATATAGTTTATACA
Found at i:776183 original size:83 final size:83
Alignment explanation
Indices: 776085--776259 Score: 262
Period size: 83 Copynumber: 2.1 Consensus size: 83
776075 TTATGCATAC
* *
776085 ATATATATACTATATTAATATAAATTATAACATATAAACTATATATTTTATATAGTTTATACATA
1 ATATATATACTATATTAATATAAATAATAACATATAAACTATATACTTT-TATAGTTTATACATA
* *
776150 TATAGTTTATATATATA-T
65 TATAATTTATATACATAGT
***
776168 ATATATATACTATATTAATATAAATAATATTTTATAAACTATATACTTTTATAGTTTATACATAT
1 ATATATATACTATATTAATATAAATAATAACATATAAACTATATACTTTTATAGTTTATACATAT
776233 ATAATTTATATACATAGT
66 ATAATTTATATACATAGT
*
776251 TTATATATA
1 ATATATATA
776260 TAGTTCACAT
Statistics
Matches: 83, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
82 30 0.36
83 53 0.64
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.47
Consensus pattern (83 bp):
ATATATATACTATATTAATATAAATAATAACATATAAACTATATACTTTTATAGTTTATACATAT
ATAATTTATATACATAGT
Found at i:776221 original size:67 final size:70
Alignment explanation
Indices: 776116--776245 Score: 176
Period size: 67 Copynumber: 1.9 Consensus size: 70
776106 AAATTATAAC
* * * *
776116 ATATAAACTATATATTTTATATAGTTTATACATATATAGTTTATATATATAT-ATATATATACTA
1 ATATAAACTATATATTTTATAAACTATATACATATATAGTTTATACATATATAATATATATACTA
776180 TATTA
66 TATTA
* * *
776185 ATATAAA-TA-ATATTTTATAAACTATATACTTTTATAGTTTATACATATATAATTTATATAC
1 ATATAAACTATATATTTTATAAACTATATACATATATAGTTTATACATATATAATATATATAC
776246 ATAGTTTATA
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
67 35 0.66
68 11 0.21
69 7 0.13
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.48
Consensus pattern (70 bp):
ATATAAACTATATATTTTATAAACTATATACATATATAGTTTATACATATATAATATATATACTA
TATTA
Found at i:776235 original size:15 final size:13
Alignment explanation
Indices: 776217--776444 Score: 66
Period size: 13 Copynumber: 17.3 Consensus size: 13
776207 TATATACTTT
776217 TATAGTTTATACATA
1 TATAGTTTAT--ATA
*
776232 TATAATTTATATA
1 TATAGTTTATATA
*
776245 CATAGTTTATATA
1 TATAGTTTATATA
* *
776258 TATAGTTCACATAAA
1 TATAGTT--TATATA
* *
776273 CATAATTTATATA
1 TATAGTTTATATA
*
776286 TATAGCTTATA-A
1 TATAGTTTATATA
776298 TA-A--TTATATA
1 TATAGTTTATATA
* * *
776308 GTTTA-TAATATAAA
1 -TATAGT-TTATATA
776322 TATAGTTTATAATTTTA
1 TATAGTTTAT-A---TA
776339 TATA-TTTATATA
1 TATAGTTTATATA
* *
776351 TATAGTTCACATAAA
1 TATAGTT--TATATA
* *
776366 TATAATTCATATA
1 TATAGTTTATATA
*
776379 TATAATTTATA-A
1 TATAGTTTATATA
776391 TA-A--TTATATA
1 TATAGTTTATATA
* * *
776401 GTTTA-TAATATAAA
1 -TATAGT-TTATATA
776415 TATAGTTTATATA
1 TATAGTTTATATA
*
776428 TA-ATTTTATATTA
1 TATAGTTTATA-TA
776441 TATA
1 TATA
776445 TATTATATTT
Statistics
Matches: 159, Mismatches: 31, Indels: 47
0.67 0.13 0.20
Matches are distributed among these distances:
9 10 0.06
10 2 0.01
11 4 0.03
12 21 0.13
13 69 0.43
14 14 0.09
15 29 0.18
16 5 0.03
17 5 0.03
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.48
Consensus pattern (13 bp):
TATAGTTTATATA
Found at i:776324 original size:18 final size:18
Alignment explanation
Indices: 776280--776429 Score: 114
Period size: 18 Copynumber: 8.2 Consensus size: 18
776270 AAACATAATT
*
776280 TATATATATAGCTTATAA
1 TATATATATAGTTTATAA
776298 TA-ATTATATAGTTTATAA
1 TATA-TATATAGTTTATAA
*
776316 TATAAATATAGTTTATAA
1 TATATATATAGTTTATAA
*
776334 T-TTTATATA-TTTATATA
1 TATATATATAGTTTATA-A
* **
776351 TATAGTTCACATA-AATATAA
1 TATA--T-ATATAGTTTATAA
*
776371 TTCATATATATAATTTATAA
1 -T-ATATATATAGTTTATAA
776391 TA-ATTATATAGTTTATAA
1 TATA-TATATAGTTTATAA
*
776409 TATAAATATAGTTTAT-A
1 TATATATATAGTTTATAA
776426 TATA
1 TATA
776430 ATTTTATATT
Statistics
Matches: 107, Mismatches: 13, Indels: 25
0.74 0.09 0.17
Matches are distributed among these distances:
16 6 0.06
17 15 0.14
18 59 0.55
19 7 0.07
20 8 0.07
21 9 0.08
22 3 0.03
ACGTcount: A:0.45, C:0.03, G:0.04, T:0.48
Consensus pattern (18 bp):
TATATATATAGTTTATAA
Found at i:776348 original size:93 final size:93
Alignment explanation
Indices: 776232--776447 Score: 319
Period size: 93 Copynumber: 2.3 Consensus size: 93
776222 TTTATACATA
* *
776232 TATAATTTATATACATAGTTTATATATATAGTTCACATAAACATAATTTATATATATAGCTTATA
1 TATAATTT-TAT--ATA-TTTATATATATAGTTCACATAAACATAATTCATATATATAACTTATA
776297 ATAATTATATAGTTTATAATATAAATATAGTT
62 ATAATTATATAGTTTATAATATAAATATAGTT
* *
776329 TATAATTTTATATATTTATATATATAGTTCACATAAATATAATTCATATATATAATTTATAATAA
1 TATAATTTTATATATTTATATATATAGTTCACATAAACATAATTCATATATATAACTTATAATAA
776394 TTATATAGTTTATAATATAAATATAGTT
66 TTATATAGTTTATAATATAAATATAGTT
776422 TATATATAATTT-TATA-TTATATATAT
1 TATA-AT--TTTATATATTTATATATAT
776448 TATATTTTTT
Statistics
Matches: 112, Mismatches: 4, Indels: 9
0.90 0.03 0.07
Matches are distributed among these distances:
93 79 0.71
94 15 0.13
95 4 0.04
96 6 0.05
97 8 0.07
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.48
Consensus pattern (93 bp):
TATAATTTTATATATTTATATATATAGTTCACATAAACATAATTCATATATATAACTTATAATAA
TTATATAGTTTATAATATAAATATAGTT
Found at i:780181 original size:15 final size:15
Alignment explanation
Indices: 780161--780198 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
780151 TATAAATAAT
780161 ATTAATAAAA-TATTA
1 ATTAATAAAATTA-TA
780176 ATTAATAAAATTATA
1 ATTAATAAAATTATA
780191 A-TAATAAA
1 ATTAATAAA
780199 TACCATATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.32
15 13 0.59
16 2 0.09
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
ATTAATAAAATTATA
Found at i:781341 original size:9 final size:9
Alignment explanation
Indices: 781323--781378 Score: 71
Period size: 9 Copynumber: 6.3 Consensus size: 9
781313 AGTAAGATAA
*
781323 AAAATGAAT
1 AAAATAAAT
781332 AAAATAAAT
1 AAAATAAAT
*
781341 AAAATGAAT
1 AAAATAAAT
781350 AAAATAAA-
1 AAAATAAAT
781358 ATAAATAAAT
1 A-AAATAAAT
781368 -AAATAAAT
1 AAAATAAAT
781376 AAA
1 AAA
781379 TAATAATATA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
8 9 0.22
9 32 0.78
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.21
Consensus pattern (9 bp):
AAAATAAAT
Found at i:781342 original size:4 final size:4
Alignment explanation
Indices: 781319--781381 Score: 65
Period size: 4 Copynumber: 15.0 Consensus size: 4
781309 ATGAAGTAAG
* *
781319 ATAA A-AA ATGA ATAAA ATAA ATAAA ATGA ATAAA ATAAA ATAA ATAA
1 ATAA ATAA ATAA AT-AA ATAA AT-AA ATAA AT-AA AT-AA ATAA ATAA
781366 ATAA ATAA ATAA ATAA
1 ATAA ATAA ATAA ATAA
781382 TAATATATAC
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
3 3 0.06
4 33 0.65
5 15 0.29
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (4 bp):
ATAA
Found at i:781356 original size:14 final size:13
Alignment explanation
Indices: 781333--781386 Score: 74
Period size: 14 Copynumber: 4.1 Consensus size: 13
781323 AAAATGAATA
781333 AAATAAATAAAAT
1 AAATAAATAAAAT
*
781346 GAATAAAATAAAAT
1 AAAT-AAATAAAAT
781360 AAATAAAT-AAAT
1 AAATAAATAAAAT
781372 AAATAAATAATAAT
1 AAATAAATAA-AAT
781386 A
1 A
781387 TATACACAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
12 12 0.33
13 8 0.22
14 16 0.44
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.24
Consensus pattern (13 bp):
AAATAAATAAAAT
Found at i:781386 original size:18 final size:17
Alignment explanation
Indices: 781307--781384 Score: 90
Period size: 18 Copynumber: 4.6 Consensus size: 17
781297 AGAGAAACGA
*
781307 AAATGAAGTAAGATAAA-
1 AAATGAA-TAAAATAAAT
781324 AAATGAATAAAATAAAT
1 AAATGAATAAAATAAAT
781341 AAAATGAATAAAATAAAAT
1 -AAATGAATAAAAT-AAAT
*
781360 AAATAAAT-AAATAAAT
1 AAATGAATAAAATAAAT
781376 AAAT-AATAA
1 AAATGAATAA
781385 TATATACACA
Statistics
Matches: 55, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
15 3 0.05
16 17 0.31
17 11 0.20
18 20 0.36
19 4 0.07
ACGTcount: A:0.72, C:0.00, G:0.06, T:0.22
Consensus pattern (17 bp):
AAATGAATAAAATAAAT
Found at i:783076 original size:17 final size:17
Alignment explanation
Indices: 783054--783086 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
783044 TTCATACAGA
783054 GTCATTGAATCATTCAG
1 GTCATTGAATCATTCAG
783071 GTCATTGAATCATTCA
1 GTCATTGAATCATTCA
783087 ACGCTTAATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.36
Consensus pattern (17 bp):
GTCATTGAATCATTCAG
Found at i:787894 original size:30 final size:30
Alignment explanation
Indices: 787858--787917 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
787848 TAAAGGTTAA
787858 GAAATTAGAAAATAATTCAAGCAAATGATT
1 GAAATTAGAAAATAATTCAAGCAAATGATT
787888 GAAATTAGAAAATAATTCAAGCAAATGATT
1 GAAATTAGAAAATAATTCAAGCAAATGATT
787918 CATCATTGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.53, C:0.07, G:0.13, T:0.27
Consensus pattern (30 bp):
GAAATTAGAAAATAATTCAAGCAAATGATT
Found at i:793430 original size:210 final size:211
Alignment explanation
Indices: 792797--793609 Score: 1176
Period size: 217 Copynumber: 3.8 Consensus size: 211
792787 ATTTAAGAAT
*
792797 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACATTGATGTG
1 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACA-T-A-GAG
* * * *
792862 GGATCAACTCGAAATAATTTTAAGTTGTGAGGTTGAAATTAATACAAAAAATTACTAAATTTTAC
63 GGATCAAATCAAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAAA-TACTAAATTATAC
* * *
792927 CCATTTAAAAAGTTATGGGCCAATTAAAAAAATAGAATTAAGTAATAAGTATAGATCAATTTCAT
127 CCATTTAAAAAGTTATGGGCCAATTAAAAATATA-AA-TAAGTAATAAGTATGGGTCAATTTCAT
792992 ATGCAAATAAAATTTGGAGGAC
190 ATGCAAATAAAATTTGGAGGAC
793014 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACATTGATGAG
1 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACA-T-A-GAG
* * *
793079 GGATCAAATCGAAATAATTTTAAATTGTGATGTTGAAATTAATACAAAAATTACTAAATTATACC
63 GGATCAAATCAAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAAATACTAAATTATACC
* * **
793144 TATTTAAAAAGTTATGTGTTAATTTAAAAATATAAATAAGTAATAAGTATGGGTCAATTTCATAT
128 CATTTAAAAAGTTATGGGCCAA-TTAAAAATATAAATAAGTAATAAGTATGGGTCAATTTCATAT
793209 GCAAATAAAATTTGGAGGAC
192 GCAAATAAAATTTGGAGGAC
*
793229 TAAATTGAACAAATATGAAATTTA-AAATAAAAATTTAAATATATTAAACAACACA-A-A-AGGG
1 TAAATTGAACAAATATGAAA-TTACAAATAAAAATTTAAATAAATTAAACAACACACATAGAGGG
793290 ATCAAATCAAAATAATTTTAAACTT-TGAGGTTGAAATTAATACAAAAAAATACTAAATTATACC
65 ATCAAATCAAAATAATTTTAAA-TTGTGAGGTTGAAATTAATAC-AAAAAATACTAAATTATACC
**
793354 CATTTAAAAAGTTATGGGCCAATTTAAAAATATAAATAAGTAATAAGTATGGGTCAATTTCAGGT
128 CATTTAAAAAGTTATGGGCCAA-TTAAAAATATAAATAAGTAATAAGTATGGGTCAATTTCATAT
793419 GCAAATAAAATTTGGAGGAC
192 GCAAATAAAATTTGGAGGAC
* * * *
793439 TAAATTGAAAAAATA-AAAATTACAAATAAAAATTTAAATATATTAAATAACACA-A-A-AGGGA
1 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACATAGAGGGA
* * * *
793500 TCAAATCAAAATAAATTTAAATTTTGAGGTTGAAATTAATACAAAATATACTAAATTATACTCAT
66 TCAAATCAAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAAATACTAAATTATACCCAT
* *
793565 TTAAAAAGTTATGGACCAATTAATAAATAGAAATAAGTAATAAGT
131 TTAAAAAGTTATGGGCCAATTAA-AAATATAAATAAGTAATAAGT
793610 TGAGAAAAAA
Statistics
Matches: 558, Mismatches: 31, Indels: 23
0.91 0.05 0.04
Matches are distributed among these distances:
207 4 0.01
208 64 0.11
209 120 0.22
210 114 0.20
211 1 0.00
214 1 0.00
215 97 0.17
216 36 0.06
217 121 0.22
ACGTcount: A:0.51, C:0.08, G:0.11, T:0.30
Consensus pattern (211 bp):
TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACATAGAGGGA
TCAAATCAAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAAATACTAAATTATACCCAT
TTAAAAAGTTATGGGCCAATTAAAAATATAAATAAGTAATAAGTATGGGTCAATTTCATATGCAA
ATAAAATTTGGAGGAC
Found at i:793635 original size:2 final size:2
Alignment explanation
Indices: 793630--793737 Score: 171
Period size: 2 Copynumber: 53.0 Consensus size: 2
793620 AAAACAACTA
* *
793630 AT AT AT AT AT AT AT AA ACT AT AT AGT TT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT A-T AT AT A-T AT AT AT AT AT AT AT AT AT
*
793674 AT AT AT AT AT AT AT AT AT AT AT TT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
793716 AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT
793738 TATGTATAAA
Statistics
Matches: 98, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
2 96 0.98
3 2 0.02
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (2 bp):
AT
Found at i:793660 original size:20 final size:20
Alignment explanation
Indices: 793637--793970 Score: 76
Period size: 20 Copynumber: 17.1 Consensus size: 20
793627 CTAATATATA
793637 TATATATAAACTATATAGTT
1 TATATATAAACTATATAGTT
793657 TATATATATATA-TATATA-TAT
1 TATATATA-A-ACTATATAGT-T
*
793678 ATATATATATA-TATATA-TT
1 -TATATATAAACTATATAGTT
793697 TATATATATATA-TATATA-TAT
1 TATATATA-A-ACTATATAGT-T
*
793718 ATATATATATA-TATATA-TAT
1 -TATATATAAACTATATAGT-T
* **
793738 TATGTATAAACTATA-A-AC
1 TATATATAAACTATATAGTT
* **
793756 TATATAT--AC--CAT-GCA
1 TATATATAAACTATATAGTT
*
793771 TAAACTATAATACTATATAGTT
1 TATA-TATAA-ACTATATAGTT
* **
793793 TATATATGAACTAT-T-GAAC
1 TATATATAAACTATATAG-TT
* *
793812 TATATAGAAACTACATAGTT
1 TATATATAAACTATATAGTT
* *
793832 TATATATAAATTATATATGAAT
1 TATATATAAACTATATA-G-TT
* *
793854 TATATA-AAACTATACAATT
1 TATATATAAACTATATAGTT
* * *
793873 TATATTTATA-TAT-TA-TG
1 TATATATAAACTATATAGTT
*
793890 TATAATTATAAA-TA-ATA-TA
1 TAT-A-TATAAACTATATAGTT
* *
793909 T-TGTATAAATTATATAGTT
1 TATATATAAACTATATAGTT
793928 TATTAATATAAAC--TATAGTT
1 TA-T-ATATAAACTATATAGTT
793948 TATATATATATA-TATATAGTT
1 TATATATA-A-ACTATATAGTT
793969 TA
1 TA
793971 GGGTTTAGGA
Statistics
Matches: 234, Mismatches: 43, Indels: 73
0.67 0.12 0.21
Matches are distributed among these distances:
14 1 0.00
15 3 0.01
16 11 0.05
17 6 0.03
18 26 0.11
19 47 0.20
20 71 0.30
21 35 0.15
22 34 0.15
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.45
Consensus pattern (20 bp):
TATATATAAACTATATAGTT
Found at i:794033 original size:20 final size:20
Alignment explanation
Indices: 794008--794080 Score: 83
Period size: 20 Copynumber: 3.4 Consensus size: 20
793998 TATAAACTAC
794008 ATACTATAATTTATATTTAT
1 ATACTATAATTTATATTTAT
*
794028 ATACTATATTTTATACTATTTAT
1 ATACTATA-ATT-TA-TATTTAT
*
794051 ATAAACTATAGTTTATATTTAT
1 AT--ACTATAATTTATATTTAT
794073 ATACTATA
1 ATACTATA
794081 TATATGAACT
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
20 14 0.30
21 2 0.04
22 11 0.24
23 11 0.24
24 2 0.04
25 6 0.13
ACGTcount: A:0.40, C:0.07, G:0.01, T:0.52
Consensus pattern (20 bp):
ATACTATAATTTATATTTAT
Found at i:794044 original size:12 final size:13
Alignment explanation
Indices: 794019--794068 Score: 59
Period size: 13 Copynumber: 3.8 Consensus size: 13
794009 TACTATAATT
794019 TATATTTATATAC
1 TATATTTATATAC
794032 TATATTT-TATAC
1 TATATTTATATAC
*
794044 TAT-TTATATAAAC
1 TATATT-TATATAC
794057 TATAGTTTATAT
1 TATA-TTTATAT
794069 TTATATACTA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
11 2 0.06
12 9 0.29
13 14 0.45
14 4 0.13
15 2 0.06
ACGTcount: A:0.38, C:0.06, G:0.02, T:0.54
Consensus pattern (13 bp):
TATATTTATATAC
Found at i:794059 original size:25 final size:23
Alignment explanation
Indices: 794021--794080 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
794011 CTATAATTTA
*
794021 TATTTATATACTATATTTTATAC
1 TATTTATATACTATAGTTTATAC
794044 TATTTATATAAACTATAG-TT-TA-
1 TATTTATAT--ACTATAGTTTATAC
794066 TATTTATATACTATA
1 TATTTATATACTATA
794081 TATATGAACT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
20 6 0.18
22 9 0.26
23 11 0.32
24 2 0.06
25 6 0.18
ACGTcount: A:0.38, C:0.07, G:0.02, T:0.53
Consensus pattern (23 bp):
TATTTATATACTATAGTTTATAC
Found at i:794079 original size:33 final size:33
Alignment explanation
Indices: 794032--794119 Score: 119
Period size: 33 Copynumber: 2.8 Consensus size: 33
794022 ATTTATATAC
*
794032 TATATTT-TATACTATTTATATAAACTATAGTT
1 TATATTTATATACTATATATATAAACTATAGTT
*
794064 TATATTTATATACTATATATATGAACTATAGTT
1 TATATTTATATACTATATATATAAACTATAGTT
* *
794097 TACA--TATAAACTATATATATAAA
1 TATATTTATATACTATATATATAAA
794120 TATGTATATA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
31 17 0.34
32 7 0.14
33 26 0.52
ACGTcount: A:0.43, C:0.07, G:0.03, T:0.47
Consensus pattern (33 bp):
TATATTTATATACTATATATATAAACTATAGTT
Found at i:794083 original size:31 final size:32
Alignment explanation
Indices: 794032--794115 Score: 95
Period size: 31 Copynumber: 2.7 Consensus size: 32
794022 ATTTATATAC
794032 TATATTT-TATACTATTTATATA-AACTATAGTT
1 TATATTTATATACTA--TATATAGAACTATAGTT
794064 TATATTTATATACTATATATATGAACTATAGTT
1 TATATTTATATACTATATATA-GAACTATAGTT
* *
794097 TACA--TATAAACTATATATA
1 TATATTTATATACTATATATA
794116 TAAATATGTA
Statistics
Matches: 47, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
31 20 0.43
32 7 0.15
33 20 0.43
ACGTcount: A:0.42, C:0.07, G:0.04, T:0.48
Consensus pattern (32 bp):
TATATTTATATACTATATATAGAACTATAGTT
Found at i:794163 original size:18 final size:18
Alignment explanation
Indices: 794142--794256 Score: 79
Period size: 18 Copynumber: 5.9 Consensus size: 18
794132 AAGGTTGATA
*
794142 TTTATATATGAACTATAG
1 TTTACATATGAACTATAG
*
794160 TTTACATATAAACTATATAG
1 TTTACATATGAAC--TATAG
* *
794180 TATATATACT-AACTATAG
1 TTTACATA-TGAACTATAG
* *
794198 TTTACATATAAACTATAATTAATA
1 TTTACATATGAAC--T-A-T-A-G
*
794222 TTTACATTTGAACTATAG
1 TTTACATATGAACTATAG
794240 TTTACATATGAACTATA
1 TTTACATATGAACTATA
794257 TATATAAACT
Statistics
Matches: 76, Mismatches: 11, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
17 1 0.01
18 41 0.54
19 1 0.01
20 16 0.21
21 3 0.04
22 2 0.03
23 1 0.01
24 11 0.14
ACGTcount: A:0.43, C:0.10, G:0.06, T:0.42
Consensus pattern (18 bp):
TTTACATATGAACTATAG
Found at i:794186 original size:38 final size:37
Alignment explanation
Indices: 794144--794338 Score: 163
Period size: 38 Copynumber: 5.2 Consensus size: 37
794134 GGTTGATATT
*
794144 TATATATGAACTATAGTTTACATATAAACTATATAGTA
1 TATATAT-AACTATAGTTTACATATAAACTATATAATA
794182 TATATACTAACTATAGTTTACATATAAACTATAATTAATA
1 TATATA-TAACTATAGTTTACATATAAACTAT-A-TAATA
* * *
794222 TTTACATTTGAACTATAGTTTACATATGAACTATAT-ATA
1 --TATATAT-AACTATAGTTTACATATAAACTATATAATA
* *
794261 TA-A-ACT-A-TATAGTTTACATATGACCTATATAATA
1 TATATA-TAACTATAGTTTACATATAAACTATATAATA
* * *
794295 TATATATATA-TATA-TATATATATATA-TATATATATA
1 TATATATA-ACTATAGTTTACATATAAACTATATA-ATA
794331 TATATATA
1 TATATATA
794339 TATATATATA
Statistics
Matches: 133, Mismatches: 11, Indels: 28
0.77 0.06 0.16
Matches are distributed among these distances:
33 22 0.17
34 6 0.05
35 8 0.06
36 21 0.16
37 7 0.05
38 30 0.23
39 5 0.04
40 5 0.04
41 2 0.02
42 27 0.20
ACGTcount: A:0.45, C:0.08, G:0.05, T:0.43
Consensus pattern (37 bp):
TATATATAACTATAGTTTACATATAAACTATATAATA
Found at i:794240 original size:80 final size:75
Alignment explanation
Indices: 794139--794281 Score: 214
Period size: 80 Copynumber: 1.8 Consensus size: 75
794129 ACTAAGGTTG
*
794139 ATATTTATATATGAACTATAGTTTACATATAAACTATATAGTATATATACTAACTATAGTTTACA
1 ATATTTACATATGAACTATAGTTTACATATAAACTATATA-TATA-A-ACT-A-TATAGTTTACA
794204 TATAAACTATAATTA
61 TATAAACTATAATTA
* *
794219 ATATTTACATTTGAACTATAGTTTACATATGAACTATATATATAAACTATATAGTTTACATAT
1 ATATTTACATATGAACTATAGTTTACATATAAACTATATATATAAACTATATAGTTTACATAT
794282 GACCTATATA
Statistics
Matches: 60, Mismatches: 3, Indels: 5
0.88 0.04 0.07
Matches are distributed among these distances:
75 14 0.23
76 1 0.02
77 3 0.05
78 1 0.02
79 4 0.07
80 37 0.62
ACGTcount: A:0.43, C:0.09, G:0.06, T:0.42
Consensus pattern (75 bp):
ATATTTACATATGAACTATAGTTTACATATAAACTATATATATAAACTATATAGTTTACATATAA
ACTATAATTA
Found at i:794274 original size:33 final size:33
Alignment explanation
Indices: 794235--794304 Score: 106
Period size: 33 Copynumber: 2.1 Consensus size: 33
794225 ACATTTGAAC
794235 TATAGTTTACATATGAACTATAT-ATATAAACTA
1 TATAGTTTACATATGAACTATATAATATAAA-TA
* *
794268 TATAGTTTACATATGACCTATATAATATATATA
1 TATAGTTTACATATGAACTATATAATATAAATA
794301 TATA
1 TATA
794305 TATATATATA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
33 28 0.82
34 6 0.18
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.41
Consensus pattern (33 bp):
TATAGTTTACATATGAACTATATAATATAAATA
Found at i:794378 original size:2 final size:2
Alignment explanation
Indices: 794286--794364 Score: 151
Period size: 2 Copynumber: 40.0 Consensus size: 2
794276 ACATATGACC
794286 TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
794327 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
794365 GTTGATATTA
Statistics
Matches: 76, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.01
2 75 0.99
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:794385 original size:21 final size:21
Alignment explanation
Indices: 794292--794388 Score: 104
Period size: 18 Copynumber: 5.0 Consensus size: 21
794282 GACCTATATA
794292 ATATATATATATATATA--T-
1 ATATATATATATATATAGTTG
794310 ATATATATATATATATA--T-
1 ATATATATATATATATAGTTG
794328 ATATATATATATATATA-TAT-
1 ATATATATATATATATAGT-TG
794348 ATATATATATATATATAGTTG
1 ATATATATATATATATAGTTG
*
794369 ATAT-TATATACTCTATAGTT
1 ATATATATATA-TATATAGTT
794389 TACATATGAC
Statistics
Matches: 73, Mismatches: 1, Indels: 7
0.90 0.01 0.09
Matches are distributed among these distances:
18 35 0.48
20 25 0.34
21 13 0.18
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.49
Consensus pattern (21 bp):
ATATATATATATATATAGTTG
Found at i:794547 original size:33 final size:33
Alignment explanation
Indices: 794510--794718 Score: 158
Period size: 33 Copynumber: 6.5 Consensus size: 33
794500 CCCTAAACCC
*
794510 TAAACTATACATTATATAGTTTATTAGTATATA
1 TAAACTATACATTATATAGTTCATTAGTATATA
* ** *
794543 TAAACTATATAACATATA-TTGACTATATCA-TATTTA
1 TAAACTATACATTATATAGTT--C-AT-T-AGTATATA
794579 TAAACTATACATTATATATAGTTCATTAGTATATA
1 TAAACTATACA-T-TATATAGTTCATTAGTATATA
*
794614 TAAACTATATATTATATAGTTCATTAG--TATA
1 TAAACTATACATTATATAGTTCATTAGTATATA
* *
794645 TAAACTAT--A-TA-GTA--T-A-TGGTATATA
1 TAAACTATACATTATATAGTTCATTAGTATATA
*
794670 CAAACTAT--ATTATATAGTTCATTAGTATATA
1 TAAACTATACATTATATAGTTCATTAGTATATA
* *
794701 TAAACTATATAGTATATA
1 TAAACTATACATTATATA
794719 TAAACAATAT
Statistics
Matches: 140, Mismatches: 17, Indels: 38
0.72 0.09 0.19
Matches are distributed among these distances:
23 2 0.01
24 1 0.01
25 13 0.09
26 2 0.01
27 4 0.03
28 2 0.01
29 2 0.01
30 1 0.01
31 27 0.19
32 2 0.01
33 37 0.26
34 2 0.01
35 18 0.13
36 18 0.13
37 2 0.01
38 5 0.04
39 2 0.01
ACGTcount: A:0.44, C:0.08, G:0.06, T:0.43
Consensus pattern (33 bp):
TAAACTATACATTATATAGTTCATTAGTATATA
Found at i:794648 original size:31 final size:32
Alignment explanation
Indices: 794577--794718 Score: 133
Period size: 31 Copynumber: 4.6 Consensus size: 32
794567 ATATCATATT
*
794577 TATAAACTATACATTATATATAGTTCATTAGTATA
1 TATAAACTATATA-T-TATATAGTTCATTAG-ATA
794612 TATAAACTATATATTATATAGTTCATTAG-TA
1 TATAAACTATATATTATATAGTTCATTAGATA
* *
794643 TATAAACTATATAGTATAT-G----GT--ATA
1 TATAAACTATATATTATATAGTTCATTAGATA
*
794668 TACAAAC--TATATTATATAGTTCATTAGTATA
1 TATAAACTATATATTATATAGTTCATTAG-ATA
*
794699 TATAAACTATATAGTATATA
1 TATAAACTATATATTATATA
794719 TAAACAATAT
Statistics
Matches: 88, Mismatches: 8, Indels: 24
0.73 0.07 0.20
Matches are distributed among these distances:
23 9 0.10
24 1 0.01
25 8 0.09
26 1 0.01
28 1 0.01
30 1 0.01
31 29 0.33
33 25 0.28
34 1 0.01
35 12 0.14
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.42
Consensus pattern (32 bp):
TATAAACTATATATTATATAGTTCATTAGATA
Found at i:794684 original size:54 final size:56
Alignment explanation
Indices: 794607--794717 Score: 181
Period size: 56 Copynumber: 2.0 Consensus size: 56
794597 TAGTTCATTA
*
794607 GTATATATAAACTATATATTATATAGTTCATTAG-TATATAAACTATATAGTATATG
1 GTATATACAAAC-ATATATTATATAGTTCATTAGATATATAAACTATATAGTATATG
794663 GTATATACAAAC-TATATTATATAGTTCATTAGTATATATAAACTATATAGTATAT
1 GTATATACAAACATATATTATATAGTTCATTAG-ATATATAAACTATATAGTATAT
794718 ATAAACAATA
Statistics
Matches: 52, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
54 20 0.38
56 32 0.62
ACGTcount: A:0.43, C:0.06, G:0.08, T:0.42
Consensus pattern (56 bp):
GTATATACAAACATATATTATATAGTTCATTAGATATATAAACTATATAGTATATG
Found at i:794715 original size:18 final size:18
Alignment explanation
Indices: 794534--794729 Score: 88
Period size: 18 Copynumber: 11.1 Consensus size: 18
794524 TATAGTTTAT
794534 TAGTATATATAAACTATA
1 TAGTATATATAAACTATA
** **
794552 TAACATATATTGACTATA
1 TAGTATATATAAACTATA
*
794570 TCA-TATTTATAAACTATA
1 T-AGTATATATAAACTATA
* * **
794588 CATTATATAT-AGTTCAT-
1 TAGTATATATAAACT-ATA
794605 TAGTATATATAAACTATA
1 TAGTATATATAAACTATA
* ** *
794623 TATTATATAGTTCATTAGTA
1 TAGTATATA-TAAACTA-TA
* * *
794643 TA-TAAACTATATAGTATA
1 TAGTATA-TATAAACTATA
* *
794661 TGGTATATACAAACTATA
1 TAGTATATATAAACTATA
*
794679 T--TATATAGT--TC-AT-
1 TAGTATATA-TAAACTATA
794692 TAGTATATATAAACTATA
1 TAGTATATATAAACTATA
*
794710 TAGTATATATAAACAATA
1 TAGTATATATAAACTATA
794728 TA
1 TA
794730 TTAATTTATT
Statistics
Matches: 129, Mismatches: 33, Indels: 32
0.66 0.17 0.16
Matches are distributed among these distances:
13 1 0.01
14 3 0.02
15 7 0.05
16 7 0.05
17 15 0.12
18 75 0.58
19 15 0.12
20 6 0.05
ACGTcount: A:0.45, C:0.08, G:0.06, T:0.41
Consensus pattern (18 bp):
TAGTATATATAAACTATA
Found at i:795906 original size:15 final size:15
Alignment explanation
Indices: 795888--795919 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
795878 TGTACCTATG
795888 GAAGGCCAACCTGTA
1 GAAGGCCAACCTGTA
795903 GAAGGCCAACCTGTA
1 GAAGGCCAACCTGTA
795918 GA
1 GA
795920 TCCTGAGCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.34, C:0.25, G:0.28, T:0.12
Consensus pattern (15 bp):
GAAGGCCAACCTGTA
Found at i:799021 original size:14 final size:14
Alignment explanation
Indices: 799002--799030 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
798992 TGGATGAGTG
799002 TGGGCCGTTGGATC
1 TGGGCCGTTGGATC
799016 TGGGCCGTTGGATC
1 TGGGCCGTTGGATC
799030 T
1 T
799031 CTCAGATCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.21, G:0.41, T:0.31
Consensus pattern (14 bp):
TGGGCCGTTGGATC
Found at i:799630 original size:123 final size:123
Alignment explanation
Indices: 799462--799766 Score: 513
Period size: 123 Copynumber: 2.5 Consensus size: 123
799452 TCCTTATGAA
* * * * *
799462 CTTCTTCTTCTTCAGATGAGTTCTTCTCATTATGAAC-TCCTTCTGGAAATGCTGATGATGATAT
1 CTTCTTCTTCTTCAGATAAGTTCTTCTTATTATGAACTTTC-TCTGGAAAAGTTGATGATGATAT
* * *
799526 ATCTCCTGCTGTGATAGAGTTATGCAACAGGTTGAACAAGCTCTTCTCATTATGAACTT
65 ATCTCCTGCTGTGATAAAGTTATGAAAAAGGTTGAACAAGCTCTTCTCATTATGAACTT
799585 CTTCTTCTTCTTCAGATAAGTTCTTCTTATTATGAACTTTCTCTGGAAAAGTTGATGATGATATA
1 CTTCTTCTTCTTCAGATAAGTTCTTCTTATTATGAACTTTCTCTGGAAAAGTTGATGATGATATA
799650 TCTCCTGCTGTGATAAAGTTATGAAAAAGGTTGAACAAGCTCTTCTCATTATGAACTT
66 TCTCCTGCTGTGATAAAGTTATGAAAAAGGTTGAACAAGCTCTTCTCATTATGAACTT
*
799708 CTTCTTCTTTTTCAGATAAGTTCTTCTTATTATGAACTTTCTCTGGAAAAGTTGATGAT
1 CTTCTTCTTCTTCAGATAAGTTCTTCTTATTATGAACTTTCTCTGGAAAAGTTGATGAT
799767 CCATCGAATG
Statistics
Matches: 172, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
123 170 0.99
124 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.41
Consensus pattern (123 bp):
CTTCTTCTTCTTCAGATAAGTTCTTCTTATTATGAACTTTCTCTGGAAAAGTTGATGATGATATA
TCTCCTGCTGTGATAAAGTTATGAAAAAGGTTGAACAAGCTCTTCTCATTATGAACTT
Found at i:799968 original size:112 final size:112
Alignment explanation
Indices: 799673--800232 Score: 727
Period size: 112 Copynumber: 5.0 Consensus size: 112
799663 TAAAGTTATG
* * * *
799673 AAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCTTTTTCAGATAAGTTCTTCTTAT
1 AAAAA-GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTCTTCAGATGAGTTCTTCTCAT
* *
799738 TATGAACT-TTCTCTGGAAAAGTTGATGATCCATCGAATGATGAATTCAAAC
65 TATGAACTCTAC-CTGG-AAA--TGATGATCCATCGAATGATGAATTTAAAC
* * *
799789 AAAAAGTTGAACAAATTCTTCTCATTATGAA--T-TTCTTCTTCTTTAGATGAGTTCTTATCATT
1 AAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTCTTCAGATGAGTTCTTCTCATT
* * *
799851 ATGAACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTTAAAC
66 ATGAACTCTACCTGGAAATGATGATCCATCGAATGATGAATTTAAAC
* * * * *
799898 AAAAGGTTGAATAAGCTCTTCTCATTATGAACTTCTTCTTCTTCTTCAGATAAGTTCTTTTCATT
1 AAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTCTTCAGATGAGTTCTTCTCATT
* * *
799963 ATGAACT-TTCTCTTGAAATGATGATCCATCGAATGATGAATTCAAAC
66 ATGAACTCTAC-CTGGAAATGATGATCCATCGAATGATGAATTTAAAC
800010 AAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTT-CTTCTTCAGATGAGTTCTTCTCAT
* * * * * * *
800075 TATGAACTCTAACTGGCACTGCTGATCCACCGAGTGATGAATTTAAGC
65 TATGAACTCTACCTGGAAATGATGATCCATCGAATGATGAATTTAAAC
*
800123 AAAAAGTTGAACAAGTTATTCTCATTATGAACTTCTTCTTCTTCTTCAGATGAGTTCTTCTCATT
1 AAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTCTTCAGATGAGTTCTTCTCATT
* * * *
800188 ATGAACTCT-TCTGGAAATGTTGATCCATTGAATGATGGATTTAAA
66 ATGAACTCTACCTGGAAATGATGATCCATCGAATGATGAATTTAAA
800233 TCTTTGCTAA
Statistics
Matches: 387, Mismatches: 50, Indels: 19
0.85 0.11 0.04
Matches are distributed among these distances:
109 53 0.14
111 32 0.08
112 172 0.44
113 100 0.26
114 1 0.00
115 24 0.06
116 5 0.01
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (112 bp):
AAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTCTTCAGATGAGTTCTTCTCATT
ATGAACTCTACCTGGAAATGATGATCCATCGAATGATGAATTTAAAC
Found at i:800162 original size:225 final size:221
Alignment explanation
Indices: 799673--800224 Score: 820
Period size: 225 Copynumber: 2.5 Consensus size: 221
799663 TAAAGTTATG
*
799673 AAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCTTTTTCAGATAAGTTCTTCTT-A
1 AAAAA-GTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCTTCTTCAGATAAGTTCTT-TTCA
799737 TTATGAACTTTCTCTGGAAAAGTTGATGATCCATCGAATGATGAATTCAAACAAAAAGTTGAACA
64 TTATGAACTTTCTCTGG-AAA--TGATGATCCATCGAATGATGAATTCAAACAAAAAGTTGAACA
* *
799802 AATTCTTCTCATTATGAATTTCTTCTTCTTTAGATGAGTTCTTATCATTATGAACTCTACCTGGC
126 AATTCTTCTCATTATGAATTTCTTCTTCTTCAGATGAGTTCTTATCATTATGAACTCTAACTGGC
* *
799867 AATGTTGATCCATCAAATGATGAATTTAAAC
191 AATGCTGATCCACCAAATGATGAATTTAAAC
* *
799898 AAAAGGTTGAATAAGCTCTTCTCATTATGAACTTCTTCTTCTTCTTCAGATAAGTTCTTTTCATT
1 AAAAAGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCTTCTTCAGATAAGTTCTTTTCATT
* *
799963 ATGAACTTTCTCTTGAAATGATGATCCATCGAATGATGAATTCAAACAAAAAGTTGAACAAGTTC
66 ATGAACTTTCTCTGGAAATGATGATCCATCGAATGATGAATTCAAACAAAAAGTTGAACAAATTC
*
800028 TTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTGGCA
131 TTCTCATTATGAA--T-TTCTT-CTTCTTCAGATGAGTTCTTATCATTATGAACTCTAACTGGCA
* * * *
800093 CTGCTGATCCACCGAGTGATGAATTTAAGC
192 ATGCTGATCCACCAAATGATGAATTTAAAC
* * * *
800123 AAAAAGTTGAACAAGTTATTCTCATTATGAACTTCTTCTTCTTCTTCAGATGAGTTCTTCTCATT
1 AAAAAGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCTTCTTCAGATAAGTTCTTTTCATT
* * *
800188 ATGAACTCT-TCTGGAAATGTTGATCCATTGAATGATG
66 ATGAACTTTCTCTGGAAATGATGATCCATCGAATGATG
800225 GATTTAAATC
Statistics
Matches: 298, Mismatches: 24, Indels: 11
0.89 0.07 0.03
Matches are distributed among these distances:
221 59 0.20
223 6 0.02
224 99 0.33
225 134 0.45
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (221 bp):
AAAAAGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCTTCTTCAGATAAGTTCTTTTCATT
ATGAACTTTCTCTGGAAATGATGATCCATCGAATGATGAATTCAAACAAAAAGTTGAACAAATTC
TTCTCATTATGAATTTCTTCTTCTTCAGATGAGTTCTTATCATTATGAACTCTAACTGGCAATGC
TGATCCACCAAATGATGAATTTAAAC
Found at i:801126 original size:114 final size:114
Alignment explanation
Indices: 800926--801262 Score: 584
Period size: 114 Copynumber: 3.0 Consensus size: 114
800916 AATCATGCAG
* * * * ** *
800926 TTCATCTTTCAATTCTAATGATTGGTTCTGTGGTTCCTACCGAACCAGATCAGATAACTCAAAGA
1 TTCATCTTTCAAATCTAATAATTGGTTTTGGGGTTTATACCAAACCAGATCAGATAACTCAAAGA
800991 ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCAAA
66 ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCAAA
801040 TTCATCTTTCAAATCTAATAATTGGTTTTGGGGTTTATACCAAACCAGATCAGATAACTCAAAGA
1 TTCATCTTTCAAATCTAATAATTGGTTTTGGGGTTTATACCAAACCAGATCAGATAACTCAAAGA
801105 ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCAAA
66 ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCAAA
801154 TTCATCTTTCAAATCTAATAATTGGTTTTGGGGTTTATACCAAACCAGATCAGATAACTCAAAGA
1 TTCATCTTTCAAATCTAATAATTGGTTTTGGGGTTTATACCAAACCAGATCAGATAACTCAAAGA
* * *
801219 ACACATCCAGAAGATGCTATTGGGCCTCCTTATTTCTACCATGA
66 ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGA
801263 TAACGTGGCA
Statistics
Matches: 213, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
114 213 1.00
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (114 bp):
TTCATCTTTCAAATCTAATAATTGGTTTTGGGGTTTATACCAAACCAGATCAGATAACTCAAAGA
ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCAAA
Found at i:814859 original size:3 final size:3
Alignment explanation
Indices: 814839--814900 Score: 85
Period size: 3 Copynumber: 21.0 Consensus size: 3
814829 TTTGGGCCTG
814839 TAA T-A TAA TAA -AA TTAA TAA TAAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA -TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA
814884 TAA TAA TAA -AA TAA TAA
1 TAA TAA TAA TAA TAA TAA
814901 AAAACCAAAT
Statistics
Matches: 54, Mismatches: 0, Indels: 10
0.84 0.00 0.16
Matches are distributed among these distances:
2 6 0.11
3 43 0.80
4 5 0.09
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:815675 original size:20 final size:20
Alignment explanation
Indices: 815650--815691 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
815640 TTCTGCTTTA
* * *
815650 TTCTGTTTTATGTTGTTTGC
1 TTCTGTTTGATATTGCTTGC
815670 TTCTGTTTGATATTGCTTGC
1 TTCTGTTTGATATTGCTTGC
815690 TT
1 TT
815692 TTACTTGATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.07, C:0.12, G:0.19, T:0.62
Consensus pattern (20 bp):
TTCTGTTTGATATTGCTTGC
Found at i:816648 original size:16 final size:16
Alignment explanation
Indices: 816629--816667 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
816619 TGAGTCAATT
*
816629 ACAGGTCAGGTTCATA
1 ACAGGTCAGGTTCAAA
*
816645 ACAGGTCAGGTTGAAA
1 ACAGGTCAGGTTCAAA
816661 ACAGGTC
1 ACAGGTC
816668 GGGTAATACC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.33, C:0.18, G:0.28, T:0.21
Consensus pattern (16 bp):
ACAGGTCAGGTTCAAA
Found at i:820083 original size:37 final size:39
Alignment explanation
Indices: 820038--820115 Score: 124
Period size: 37 Copynumber: 2.1 Consensus size: 39
820028 TCGGGTTGGG
820038 TTTTTTAAGTGTGATATTCGGGT-GAGTC-AGGTCGGGT
1 TTTTTTAAGTGTGATATTCGGGTCGAGTCGAGGTCGGGT
* *
820075 TTTTTTAAGTGTGATGTTCGGGTCGAGTCGAGTTCGGGT
1 TTTTTTAAGTGTGATATTCGGGTCGAGTCGAGGTCGGGT
820114 TT
1 TT
820116 AGGGTGAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
37 22 0.59
38 5 0.14
39 10 0.27
ACGTcount: A:0.14, C:0.09, G:0.35, T:0.42
Consensus pattern (39 bp):
TTTTTTAAGTGTGATATTCGGGTCGAGTCGAGGTCGGGT
Found at i:820186 original size:248 final size:250
Alignment explanation
Indices: 819821--820367 Score: 832
Period size: 248 Copynumber: 2.2 Consensus size: 250
819811 TCGGGTCGGA
* * * * *
819821 TCGGATTTTTTTAAGTGTGGTATTCGGGTCGGGTCGGGTTCGGGTTTAGGGTGAAAAAAATCGGA
1 TCGGGTTTTTTTAAGTGTGATATTCGGGTCGAGTC-GGTTCGGGTTTAGGGTGAAAAAAACCAGA
*
819886 CCGACCCGAAAATATATATAATTCAAGTCGGGTCGGATTAAGTCACTGTTTTTATTAAATAAAAA
65 CCGACCCGAAAATATATATAATTCAAGTCGGGTAGGATTAAGTCACTGTTTTTATTAAATAAAAA
819951 TAATTTTTTATTATTTCGGAT-T-GGATTTCTAATTCATATATTCGGGTCAGGTCGGATGAAACT
130 TAATTTTTTATTATTTCGGATGTCGGATTTCTAATTCATATATTCGGGTCAGGTCGGATGAAACT
* * *
820014 CTATTTTGTTCGGGTCGGGTTGGGTTTTTTAAGTGTGATATTCGGGT-GAGTCAGG
195 CTATTTTGTTCGGGTCAGGTCGAGTTTTTTAAGTGTGATATTCGGGTCGAGTCAGG
*
820069 TCGGGTTTTTTTAAGTGTGATGTTCGGGTCGAGTCGAGTTCGGGTTTAGGGTGAAAAAAACCAGA
1 TCGGGTTTTTTTAAGTGTGATATTCGGGTCGAGTCG-GTTCGGGTTTAGGGTGAAAAAAACCAGA
** *
820134 CCGACCCGAAAATATATATAATTCGGGTCGGGTAGGATTAAGTCATTGTTTTTATTAAATAAAAA
65 CCGACCCGAAAATATATATAATTCAAGTCGGGTAGGATTAAGTCACTGTTTTTATTAAATAAAAA
* * * *
820199 TATTTTTTTATTATTTCGGGTCGGGTCGGATTTCTAATTCATGTATTCGGGTCGGGTCGGATGAA
130 TAATTTTTTATTATTTCGGAT---GTCGGATTTCTAATTCATATATTCGGGTCAGGTCGGATGAA
* * *
820264 ACTTTATTTTGTTCGGGTCAGGTCGAGTTTTTTAAGTGTGATATTTGGGTCGAGTCGGG
192 ACTCTATTTTGTTCGGGTCAGGTCGAGTTTTTTAAGTGTGATATTCGGGTCGAGTCAGG
*
820323 TCGGG-TTTTTTAAGTGTGATATTCGGGTCGAGTCGGTTTGGGTTT
1 TCGGGTTTTTTTAAGTGTGATATTCGGGTCGAGTCGGTTCGGGTTT
820368 TCTAAAGTGT
Statistics
Matches: 270, Mismatches: 22, Indels: 10
0.89 0.07 0.03
Matches are distributed among these distances:
247 1 0.00
248 137 0.51
252 10 0.04
253 110 0.41
254 12 0.04
ACGTcount: A:0.23, C:0.11, G:0.28, T:0.38
Consensus pattern (250 bp):
TCGGGTTTTTTTAAGTGTGATATTCGGGTCGAGTCGGTTCGGGTTTAGGGTGAAAAAAACCAGAC
CGACCCGAAAATATATATAATTCAAGTCGGGTAGGATTAAGTCACTGTTTTTATTAAATAAAAAT
AATTTTTTATTATTTCGGATGTCGGATTTCTAATTCATATATTCGGGTCAGGTCGGATGAAACTC
TATTTTGTTCGGGTCAGGTCGAGTTTTTTAAGTGTGATATTCGGGTCGAGTCAGG
Found at i:820385 original size:38 final size:37
Alignment explanation
Indices: 820284--820404 Score: 154
Period size: 37 Copynumber: 3.2 Consensus size: 37
820274 GTTCGGGTCA
* * *
820284 GGTCGAGTTTTTTAAGTGTGATATTTGGGTCGAGTCG
1 GGTCGGGTTTTTAAAGTGTGATATTCGGGTCGAGTCG
*
820321 GGTCGGGTTTTTTAAGTGTGATATTCGGGTCGAGTCG
1 GGTCGGGTTTTTAAAGTGTGATATTCGGGTCGAGTCG
* *
820358 GTTTGGGTTTTCTAAAGTGTGATATTCGGGTCG-GATCG
1 GGTCGGGTTTT-TAAAGTGTGATATTCGGGTCGAG-TCG
*
820396 GATCGGGTT
1 GGTCGGGTT
820405 CGGGTTTAGG
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
37 45 0.60
38 30 0.40
ACGTcount: A:0.15, C:0.10, G:0.36, T:0.39
Consensus pattern (37 bp):
GGTCGGGTTTTTAAAGTGTGATATTCGGGTCGAGTCG
Found at i:820596 original size:294 final size:291
Alignment explanation
Indices: 820027--820661 Score: 994
Period size: 294 Copynumber: 2.2 Consensus size: 291
820017 TTTTGTTCGG
* * * *
820027 GTCGGGTTGGGTTTTTTAAGTGTGATATTCGGGT-GAGTCAGGTCGGGTTTTTTTAAGTGTGATG
1 GTCGGGTCGGGTTTTTTAAGTGTGATATTCGGGTCGAGTCAGGTCGGGTTTTCTAAAGTGTGATA
820091 TTCGGGTCGAGTCGAGTTCGGGTTTAGGGTGAAAAAAACCAGACCGACCCGAAAATATATATAAT
66 TTCGGGTCGAGTCGAGTTCGGGTTTAGGGTGAAAAAAACCAGACCGACCCGAAAATATATATAAT
* *
820156 TCGGGTCGGGTAGGATTAAGTCATTGTTTTTATTAAATAAAAATATTTTTTTATTATTTCGGGTC
131 TCGGGTCGGGTAGGATTAAGTCACTGTTTTTATTAAATAAAAATATATTTTTATTATTTCGGGTC
* *
820221 GGGTCGGATTTCTAATTCATGTATTCGGGTCGGGTCGGATGAAACTTTATTTTGTTCGGGTCAGG
196 GGGTCGGATTTCTAATTCATATATTCAGGTCGGGTCGGATGAAACTTTATTTTGTTCGGGTCAGG
*
820286 TCGAGTTTTTTAAGTGTGATATTTGGGTCGA
261 TCGAGTTTTTTAAGTGTGATATTCGGGTCGA
*
820317 GTCGGGTCGGGTTTTTTAAGTGTGATATTCGGGTCGAGTC-GGTTTGGGTTTTCTAAAGTGTGAT
1 GTCGGGTCGGGTTTTTTAAGTGTGATATTCGGGTCGAGTCAGG-TCGGGTTTTCTAAAGTGTGAT
*
820381 ATTCGGGTCGGATCGGATCGGGTTCGGGTTTAGGGTG-AAAAAACC-GAACCGACCCGAAAATAT
65 ATTCGGGTC-GA---G-TCGAGTTCGGGTTTAGGGTGAAAAAAACCAG-ACCGACCCGAAAATAT
*
820444 ATATAATTCGGGTCGGGTCGGATTAAGTCACTGTTTTTATTAAATAAAAATA-ATTTTTATTATT
124 ATATAATTCGGGTCGGGTAGGATTAAGTCACTGTTTTTATTAAATAAAAATATATTTTTATTATT
820508 TCGGGTCGGGTCGGATTTCTAATTCATATATTCAGGTCGGGTCGGATGAAACTTTATTTTGTTCG
189 TCGGGTCGGGTCGGATTTCTAATTCATATATTCAGGTCGGGTCGGATGAAACTTTATTTTGTTCG
* * *
820573 GGTCGGGTCGGGTTTTTTAAGTGTGATATTCGGTTCGA
254 GGTCAGGTCGAGTTTTTTAAGTGTGATATTCGGGTCGA
* *
820611 GTCGGGTCAGGTTTTTTTAAGTGTGATATTCGGGTC-AGGTCGGGTCGGGTT
1 GTCGGGTC-GGGTTTTTTAAGTGTGATATTCGGGTCGA-GTCAGGTCGGGTT
820662 CGGGTTTAAG
Statistics
Matches: 317, Mismatches: 17, Indels: 17
0.90 0.05 0.05
Matches are distributed among these distances:
290 35 0.11
291 31 0.10
292 2 0.01
294 118 0.37
295 110 0.35
296 21 0.07
ACGTcount: A:0.21, C:0.12, G:0.30, T:0.37
Consensus pattern (291 bp):
GTCGGGTCGGGTTTTTTAAGTGTGATATTCGGGTCGAGTCAGGTCGGGTTTTCTAAAGTGTGATA
TTCGGGTCGAGTCGAGTTCGGGTTTAGGGTGAAAAAAACCAGACCGACCCGAAAATATATATAAT
TCGGGTCGGGTAGGATTAAGTCACTGTTTTTATTAAATAAAAATATATTTTTATTATTTCGGGTC
GGGTCGGATTTCTAATTCATATATTCAGGTCGGGTCGGATGAAACTTTATTTTGTTCGGGTCAGG
TCGAGTTTTTTAAGTGTGATATTCGGGTCGA
Found at i:820615 original size:37 final size:37
Alignment explanation
Indices: 820568--820661 Score: 136
Period size: 38 Copynumber: 2.5 Consensus size: 37
820558 ACTTTATTTT
*
820568 GTTCGGGTCGGGTCGGGTTTTTTAAGTGTGATATTCG
1 GTTCGAGTCGGGTCGGGTTTTTTAAGTGTGATATTCG
*
820605 GTTCGAGTCGGGTCAGGTTTTTTTAAGTGTGATATTCG
1 GTTCGAGTCGGGTC-GGGTTTTTTAAGTGTGATATTCG
*
820643 GGTC-AGGTCGGGTCGGGTT
1 GTTCGA-GTCGGGTCGGGTT
820662 CGGGTTTAAG
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
37 18 0.35
38 33 0.65
ACGTcount: A:0.12, C:0.12, G:0.38, T:0.38
Consensus pattern (37 bp):
GTTCGAGTCGGGTCGGGTTTTTTAAGTGTGATATTCG
Found at i:821265 original size:16 final size:18
Alignment explanation
Indices: 821244--821282 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
821234 AATTGGATTT
821244 CAATTCC-T-ACAAATTC
1 CAATTCCTTCACAAATTC
*
821260 CAATTCCTTCACAGATTC
1 CAATTCCTTCACAAATTC
821278 CAATT
1 CAATT
821283 TCCTCATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 7 0.35
17 1 0.05
18 12 0.60
ACGTcount: A:0.33, C:0.31, G:0.03, T:0.33
Consensus pattern (18 bp):
CAATTCCTTCACAAATTC
Found at i:821279 original size:18 final size:16
Alignment explanation
Indices: 821239--821282 Score: 52
Period size: 18 Copynumber: 2.6 Consensus size: 16
821229 TATGGAATTG
*
821239 GATTTCAATTCCTACA
1 GATTCCAATTCCTACA
*
821255 AATTCCAATTCCTTCACA
1 GATTCCAATTCC-T-ACA
821273 GATTCCAATT
1 GATTCCAATT
821283 TCCTCATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 10 0.43
17 1 0.04
18 12 0.52
ACGTcount: A:0.32, C:0.27, G:0.05, T:0.36
Consensus pattern (16 bp):
GATTCCAATTCCTACA
Found at i:825140 original size:18 final size:17
Alignment explanation
Indices: 825086--825134 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 17
825076 TTGGACCCTT
* *
825086 AGTGCATCGGTGCACTAA
1 AGTGCATCGATGCA-TCA
825104 GAGTGCATCGATGCATCA
1 -AGTGCATCGATGCATCA
825122 AGTGCATTCGATG
1 AGTGCA-TCGATG
825135 TTTCAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 6 0.22
18 8 0.30
19 13 0.48
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (17 bp):
AGTGCATCGATGCATCA
Found at i:825660 original size:18 final size:18
Alignment explanation
Indices: 825637--825688 Score: 74
Period size: 18 Copynumber: 3.1 Consensus size: 18
825627 AAAATTACTC
825637 CCCCTTACTATAACACTT
1 CCCCTTACTATAACACTT
825655 CCCCTTAC--T-ACACTT
1 CCCCTTACTATAACACTT
*
825670 CCCCTTAATATAACACTT
1 CCCCTTACTATAACACTT
825688 C
1 C
825689 TCCCCATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
15 13 0.43
16 1 0.03
17 1 0.03
18 15 0.50
ACGTcount: A:0.27, C:0.40, G:0.00, T:0.33
Consensus pattern (18 bp):
CCCCTTACTATAACACTT
Found at i:831859 original size:22 final size:21
Alignment explanation
Indices: 831817--831856 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
831807 GAGTTTATTT
*
831817 TCATTTTTATATTTTGAAACA
1 TCATTTTTATATTTTAAAACA
831838 TCATTTTTATATTTTAAAA
1 TCATTTTTATATTTTAAAA
831857 ACAATTTCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.35, C:0.07, G:0.03, T:0.55
Consensus pattern (21 bp):
TCATTTTTATATTTTAAAACA
Found at i:833888 original size:64 final size:64
Alignment explanation
Indices: 833803--833962 Score: 173
Period size: 66 Copynumber: 2.5 Consensus size: 64
833793 GCACTAAGAC
* * *
833803 TGCATCGATGCATCAAGTGCATTCGATGTTTCA-AAATAGCCAGAGTGCATC-GATGAATGGCT-
1 TGCATCGATGCATCAAATGCATTCGATGTTTCATAAA-AGCCACAATGCATCAG-TGAATGG-TA
833865 GG
63 GG
* * * * *
833867 TGCATCGATGCATCAAATGCATTCAATGTTTTTCATAAAATCCTCAATGCATCAGTGCATGGTAT
1 TGCATCGATGCATCAAATGCATTCGATG--TTTCATAAAAGCCACAATGCATCAGTGAATGGTAG
833932 G
64 G
*
833933 TGCATCGATGCATGAAATGCATTCGATGTT
1 TGCATCGATGCATCAAATGCATTCGATGTT
833963 CAATTTAATT
Statistics
Matches: 81, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
64 28 0.35
65 1 0.01
66 48 0.59
67 4 0.05
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.31
Consensus pattern (64 bp):
TGCATCGATGCATCAAATGCATTCGATGTTTCATAAAAGCCACAATGCATCAGTGAATGGTAGG
Found at i:835884 original size:76 final size:76
Alignment explanation
Indices: 835755--835965 Score: 289
Period size: 76 Copynumber: 2.8 Consensus size: 76
835745 CCGTTGTACA
* * * *
835755 AGGGGGGAATCGGTACCCCCTTGGGGGGGATCGGTTCCCTCCGAGCATACTGGAATTCTCGGAG-
1 AGGGGGGAATCGGTTCCTCCTTGGGGGGAATCGGTTCCCTCCGAGCATTCTGGAATTCTCGGAGC
**
835819 CAAAACTGTTT
66 CAAAACCATTT
* *
835830 AGGGGGGAATCGGTTCCTCCTATGGGGGGAATCGGTTCCCTCCGAGCATTCTGGAAATCTCGGGG
1 AGGGGGGAATCGGTTCCTCCT-TGGGGGGAATCGGTTCCCTCCGAGCATTCTGGAATTCTCGGAG
835895 CCAAAACCATTT
65 CCAAAACCATTT
* * *
835907 AGGGGGGAATCGGTTCCTCCTTTGGGGGGGAATCGGTTCCCTCTGAGCAATCTGTAATT
1 AGGGGGGAATCGGTTCCTCC-TT-GGGGGGAATCGGTTCCCTCCGAGCATTCTGGAATT
835966 TTTGGCTTTG
Statistics
Matches: 120, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
75 19 0.16
76 39 0.32
77 30 0.25
78 32 0.27
ACGTcount: A:0.19, C:0.23, G:0.33, T:0.25
Consensus pattern (76 bp):
AGGGGGGAATCGGTTCCTCCTTGGGGGGAATCGGTTCCCTCCGAGCATTCTGGAATTCTCGGAGC
CAAAACCATTT
Found at i:838563 original size:21 final size:21
Alignment explanation
Indices: 838537--838576 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
838527 CAGAACCCCA
*
838537 GGGGGGTATCGATTCCCCTGT
1 GGGGGGAATCGATTCCCCTGT
*
838558 GGGGGGAATCGGTTCCCCT
1 GGGGGGAATCGATTCCCCT
838577 TCAAAGGGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.25, G:0.40, T:0.25
Consensus pattern (21 bp):
GGGGGGAATCGATTCCCCTGT
Found at i:838605 original size:20 final size:21
Alignment explanation
Indices: 838559--838619 Score: 79
Period size: 20 Copynumber: 2.9 Consensus size: 21
838549 TTCCCCTGTG
838559 GGGGGAATCGGTTCCCCTTCAAA
1 GGGGGAATCGGTT-CCC-TCAAA
838582 GGGGGAATCGGTTCCCTC-AA
1 GGGGGAATCGGTTCCCTCAAA
* *
838602 GGGGGGATCGATTCCCTC
1 GGGGGAATCGGTTCCCTC
838620 TGCACCAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
20 18 0.50
21 2 0.06
22 3 0.08
23 13 0.36
ACGTcount: A:0.18, C:0.26, G:0.34, T:0.21
Consensus pattern (21 bp):
GGGGGAATCGGTTCCCTCAAA
Found at i:844141 original size:75 final size:77
Alignment explanation
Indices: 844032--844231 Score: 289
Period size: 75 Copynumber: 2.6 Consensus size: 77
844022 CCGTTGTACA
* * * * *
844032 AGGGGGGAATCGGTACCCCCT-TGGGGGGGATCGGTTCCCTCCGAGCATACTGGAATTCTCGGAG
1 AGGGGGGAATCGGTTCCTCCTATGGGGGGAATCGGTTCCCTCTGAGCATACTGGAAATCTCGGAG
**
844096 -CAAAACTGTTT
66 CCAAAACCATTT
* *
844107 A-GGGGGAATCGGTTCCTCCTATGGGGGGAATCGGTTCCCTCTGAGCATTCTGGAAATCTCGGGG
1 AGGGGGGAATCGGTTCCTCCTATGGGGGGAATCGGTTCCCTCTGAGCATACTGGAAATCTCGGAG
844171 CCAAAACCATTT
66 CCAAAACCATTT
844183 AGGGGGGAATCGGTTCCTCCTATGGGGGGGAATCGGTTCCCTCTGAGCA
1 AGGGGGGAATCGGTTCCTCCTAT-GGGGGGAATCGGTTCCCTCTGAGCA
844232 ATCTGTAATT
Statistics
Matches: 112, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
74 17 0.15
75 39 0.35
76 10 0.09
77 21 0.19
78 25 0.22
ACGTcount: A:0.20, C:0.23, G:0.34, T:0.23
Consensus pattern (77 bp):
AGGGGGGAATCGGTTCCTCCTATGGGGGGAATCGGTTCCCTCTGAGCATACTGGAAATCTCGGAG
CCAAAACCATTT
Found at i:850344 original size:94 final size:93
Alignment explanation
Indices: 850184--850366 Score: 339
Period size: 94 Copynumber: 2.0 Consensus size: 93
850174 ATCACTCTAA
*
850184 AGTATCAAAAAATTATATTTAATAAATAGGGTTTAGGTTTTCTATCTACAAGTCACTTATTTATT
1 AGTATCAAAAAATTATATTTAATAAATAGGGTTTAAGTTTTCTATCTACAAGTCACTTATTTATT
850249 TTTGTTTTATTCATATTTGTTTGGTTAG
66 TTTGTTTTATTCATATTTGTTTGGTTAG
*
850277 AGTATCAAAAAAATTATATTTAATAAATAGGGTTTAAGTTTTCTATCTGCAAGTCACTTATTTAT
1 AGTATC-AAAAAATTATATTTAATAAATAGGGTTTAAGTTTTCTATCTACAAGTCACTTATTTAT
850342 TTTTGTTTTATTCATATTTGTTTGG
65 TTTTGTTTTATTCATATTTGTTTGG
850367 CAGAGGACGA
Statistics
Matches: 87, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
93 6 0.07
94 81 0.93
ACGTcount: A:0.31, C:0.08, G:0.13, T:0.49
Consensus pattern (93 bp):
AGTATCAAAAAATTATATTTAATAAATAGGGTTTAAGTTTTCTATCTACAAGTCACTTATTTATT
TTTGTTTTATTCATATTTGTTTGGTTAG
Found at i:860894 original size:2 final size:2
Alignment explanation
Indices: 860889--860927 Score: 55
Period size: 2 Copynumber: 20.0 Consensus size: 2
860879 TTTTTTATTC
860889 TA TA TA TA TA TA TA TA TA TA TA TA GTA T- TA TA -A TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA
860928 ATTTTCGGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
1 2 0.06
2 30 0.88
3 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:861232 original size:34 final size:36
Alignment explanation
Indices: 860949--861268 Score: 342
Period size: 36 Copynumber: 8.6 Consensus size: 36
860939 ACGATTTTCA
* ** *
860949 AAAATATATATTATATAGTTTTTTAAAAAAACGTTTTT
1 AAAATATATATTATATAG-TTTTGAAAATTA-TTTTTT
**
860987 AAAATATATATAATATATA-TTTTGAAAA-TATTTTGA
1 AAAATATATAT--TATATAGTTTTGAAAATTATTTTTT
* ** *
861023 AAACATTTATATATTATATAGTTTTAAAAAAAACTTTTTGA
1 AAA-A--TATATATTATATAGTTTTGAAAATTA-TTTTT-T
*
861064 AAACATATATATTATATAGTTTTTAAAATTAATTTTTTTT
1 AAA-ATATATATTATATAGTTTTGAAAATT-A--TTTTTT
*
861104 AAAATATATATTATATAATTTTGAAAATTATTTTTT
1 AAAATATATATTATATAGTTTTGAAAATTATTTTTT
* *
861140 AAAAAATATATTATATAGTTTTGAAAATTAGTTTTT
1 AAAATATATATTATATAGTTTTGAAAATTATTTTTT
* *
861176 AAAATATATATTATATAATTTTGAAAATTAGTTTTT
1 AAAATATATATTATATAGTTTTGAAAATTATTTTTT
861212 AAAA-ATATA-TATATAGTTTTGAAAATTATTTTTT
1 AAAATATATATTATATAGTTTTGAAAATTATTTTTT
861246 AAACATATATATTATATAGTTTT
1 AAA-ATATATATTATATAGTTTT
861269 AAAGCGTTTT
Statistics
Matches: 246, Mismatches: 22, Indels: 29
0.83 0.07 0.10
Matches are distributed among these distances:
34 26 0.11
35 6 0.02
36 88 0.36
37 19 0.08
38 28 0.11
39 54 0.22
40 14 0.06
41 11 0.04
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.49
Consensus pattern (36 bp):
AAAATATATATTATATAGTTTTGAAAATTATTTTTT
Found at i:861302 original size:9 final size:10
Alignment explanation
Indices: 861289--861327 Score: 57
Period size: 9 Copynumber: 4.2 Consensus size: 10
861279 TTATATCTAT
861289 TTATTTATT-
1 TTATTTATTA
861298 TTATTTATTA
1 TTATTTATTA
861308 TTA-TTATTA
1 TTATTTATTA
861317 TTA-TTATTA
1 TTATTTATTA
861326 TT
1 TT
861328 TATCACTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
9 26 0.90
10 3 0.10
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (10 bp):
TTATTTATTA
Found at i:861310 original size:3 final size:3
Alignment explanation
Indices: 861293--861327 Score: 54
Period size: 3 Copynumber: 11.7 Consensus size: 3
861283 ATCTATTTAT
861293 TTA TT- TTA TTTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TT
861328 TATCACTTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 25 0.83
4 3 0.10
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (3 bp):
TTA
Found at i:882534 original size:14 final size:14
Alignment explanation
Indices: 882515--882541 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
882505 TTATTCTGTT
882515 GGGTTTTTGTGTCG
1 GGGTTTTTGTGTCG
882529 GGGTTTTTGTGTC
1 GGGTTTTTGTGTC
882542 TTTCTCTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.07, G:0.41, T:0.52
Consensus pattern (14 bp):
GGGTTTTTGTGTCG
Found at i:884836 original size:31 final size:32
Alignment explanation
Indices: 884753--884825 Score: 94
Period size: 32 Copynumber: 2.3 Consensus size: 32
884743 GTGTTTAATT
* ** *
884753 AGTGATGTAACACATATTATATTATCATTTCA
1 AGTGATGTGACATTTATCATATTATCATTTCA
*
884785 AGTGATGTGACATTTATCATATTATCATTTTA
1 AGTGATGTGACATTTATCATATTATCATTTCA
884817 A-TGATGTGA
1 AGTGATGTGA
884826 TTTGTGTCAT
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
31 8 0.22
32 28 0.78
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.42
Consensus pattern (32 bp):
AGTGATGTGACATTTATCATATTATCATTTCA
Found at i:885572 original size:7 final size:7
Alignment explanation
Indices: 885556--885599 Score: 54
Period size: 7 Copynumber: 6.4 Consensus size: 7
885546 GTTCTCTCAA
*
885556 AAACCCT
1 AAACCAT
*
885563 AAACCTT
1 AAACCAT
885570 AAACC-T
1 AAACCAT
*
885576 AAACCTT
1 AAACCAT
885583 AAACCAT
1 AAACCAT
885590 AAACCAT
1 AAACCAT
885597 AAA
1 AAA
885600 GATTGAAGCA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
6 6 0.18
7 28 0.82
ACGTcount: A:0.52, C:0.30, G:0.00, T:0.18
Consensus pattern (7 bp):
AAACCAT
Found at i:885578 original size:13 final size:13
Alignment explanation
Indices: 885560--885599 Score: 62
Period size: 13 Copynumber: 3.0 Consensus size: 13
885550 TCTCAAAAAC
885560 CCTAAACCTTAAA
1 CCTAAACCTTAAA
885573 CCTAAACCTTAAA
1 CCTAAACCTTAAA
*
885586 CCATAAACCATAAA
1 CC-TAAACCTTAAA
885600 GATTGAAGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
13 15 0.60
14 10 0.40
ACGTcount: A:0.50, C:0.30, G:0.00, T:0.20
Consensus pattern (13 bp):
CCTAAACCTTAAA
Found at i:885585 original size:20 final size:21
Alignment explanation
Indices: 885556--885599 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
885546 GTTCTCTCAA
*
885556 AAACCCTAAACCTTAAACC-T
1 AAACCCTAAACCATAAACCAT
*
885576 AAACCTTAAACCATAAACCAT
1 AAACCCTAAACCATAAACCAT
885597 AAA
1 AAA
885600 GATTGAAGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.52, C:0.30, G:0.00, T:0.18
Consensus pattern (21 bp):
AAACCCTAAACCATAAACCAT
Found at i:887369 original size:36 final size:36
Alignment explanation
Indices: 887322--887422 Score: 202
Period size: 36 Copynumber: 2.8 Consensus size: 36
887312 TACCAAATTT
887322 TACCAAACTTTGAAAAACATTTTTCAAAGAAACATG
1 TACCAAACTTTGAAAAACATTTTTCAAAGAAACATG
887358 TACCAAACTTTGAAAAACATTTTTCAAAGAAACATG
1 TACCAAACTTTGAAAAACATTTTTCAAAGAAACATG
887394 TACCAAACTTTGAAAAACATTTTTCAAAG
1 TACCAAACTTTGAAAAACATTTTTCAAAG
887423 TTGGTTGCCA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 65 1.00
ACGTcount: A:0.47, C:0.17, G:0.08, T:0.29
Consensus pattern (36 bp):
TACCAAACTTTGAAAAACATTTTTCAAAGAAACATG
Found at i:901199 original size:4 final size:4
Alignment explanation
Indices: 901186--901230 Score: 56
Period size: 4 Copynumber: 10.8 Consensus size: 4
901176 GTTATATAAC
901186 AAAT -AAT AAAT AAAT AAAT AAAAT AAAGT AAAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT -AAAT AAA-T -AAAT AAAT AAAT AAA
901231 ATGAAAATAG
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
3 3 0.08
4 25 0.68
5 6 0.16
6 3 0.08
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:901221 original size:19 final size:18
Alignment explanation
Indices: 901190--901353 Score: 95
Period size: 19 Copynumber: 8.6 Consensus size: 18
901180 TATAACAAAT
901190 AATAAAT-AAATAAATAA
1 AATAAATAAAATAAATAA
901207 AATAAAGTAAAATAAAT-A
1 AATAAA-TAAAATAAATAA
*
901225 AATAAAATGAAAATAGATAA
1 AAT-AAAT-AAAATAAATAA
*
901245 AA-AAATATAAAAAATATTAA
1 AATAAATA-AAATAA-A-TAA
*
901265 AATGACAATAATAAAAAATAA
1 AAT-A-AATAA-AATAAATAA
* * *
901286 AGATAAGTGAAATTAAGTAA
1 A-ATAAAT-AAAATAAATAA
901306 AA-AAATAAAATAAAATAA
1 AATAAATAAAAT-AAATAA
*
901324 AAAAAATAATAA-ATAATAA
1 AATAAATAA-AATA-AATAA
*
901343 AAAAAATAAAA
1 AATAAATAAAA
901354 AAACAAGATA
Statistics
Matches: 119, Mismatches: 10, Indels: 35
0.73 0.06 0.21
Matches are distributed among these distances:
17 11 0.09
18 27 0.23
19 41 0.34
20 19 0.16
21 7 0.06
22 5 0.04
23 9 0.08
ACGTcount: A:0.74, C:0.01, G:0.05, T:0.21
Consensus pattern (18 bp):
AATAAATAAAATAAATAA
Found at i:901250 original size:31 final size:32
Alignment explanation
Indices: 901215--901286 Score: 78
Period size: 35 Copynumber: 2.2 Consensus size: 32
901205 AAAATAAAGT
*
901215 AAAATAAATAA-A-TAAAATGAAAATAGATAAAA
1 AAAATAAAAAATATTAAAATGAAAATA-AT-AAA
*
901247 AAATATAAAAAATATTAAAATGACAATAAT-AA
1 AAA-ATAAAAAATATTAAAATGAAAATAATAAA
901279 AAAATAAA
1 AAAATAAA
901287 GATAAGTGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
31 5 0.14
32 8 0.23
33 7 0.20
34 3 0.09
35 12 0.34
ACGTcount: A:0.74, C:0.01, G:0.04, T:0.21
Consensus pattern (32 bp):
AAAATAAAAAATATTAAAATGAAAATAATAAA
Found at i:901373 original size:28 final size:27
Alignment explanation
Indices: 901304--901387 Score: 71
Period size: 29 Copynumber: 2.9 Consensus size: 27
901294 GAAATTAAGT
*
901304 AAAAAAATAAAATAAAATAAAAAAAATA
1 AAAAAAATAAAA-AAAATAATAAAAATA
* *
901332 ATAAATAATAAAAAAAATAA-AAAAACA
1 A-AAAAAATAAAAAAAATAATAAAAATA
901359 AGATAGAAAATAAAAAAATTATAATAAAA
1 A-A-A-AAAATAAAAAAA--ATAATAAAA
901388 GGGTTAAATT
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
27 8 0.17
28 9 0.20
29 21 0.46
31 4 0.09
32 4 0.09
ACGTcount: A:0.80, C:0.01, G:0.02, T:0.17
Consensus pattern (27 bp):
AAAAAAATAAAAAAAATAATAAAAATA
Found at i:901387 original size:19 final size:17
Alignment explanation
Indices: 901186--901387 Score: 94
Period size: 17 Copynumber: 11.6 Consensus size: 17
901176 GTTATATAAC
901186 AAATAAT-AAATAAATAA
1 AAATAATAAAATAAA-AA
* *
901203 ATAA-AATAAAGTAAAAT
1 A-AATAATAAAATAAAAA
*
901220 AAATAAATAAAATGAAAAT
1 AAAT-AATAAAAT-AAAAA
* * *
901239 AGATAAAAAAATATAAA
1 AAATAATAAAATAAAAA
* * *
901256 AAATATTAAAATGACAA
1 AAATAATAAAATAAAAA
* *
901273 TAATAA-AAAATAAAGAT
1 AAATAATAAAATAAA-AA
* * *
901290 AAGTGAAATTAAGTAAAAA
1 AAAT--AATAAAATAAAAA
*
901309 AATAAAATAAAATAAAAA
1 AA-ATAATAAAATAAAAA
901327 AAATAAT-AAATAATAAA
1 AAATAATAAAATAA-AAA
*
901344 AAA-AATAAAA-AAACA
1 AAATAATAAAATAAAAA
* *
901359 AGAT-AGAAAATAAAAA
1 AAATAATAAAATAAAAA
901375 AATTATAATAAAA
1 AA--ATAATAAAA
901388 GGGTTAAATT
Statistics
Matches: 134, Mismatches: 34, Indels: 32
0.67 0.17 0.16
Matches are distributed among these distances:
15 9 0.07
16 24 0.18
17 40 0.30
18 37 0.28
19 18 0.13
20 6 0.04
ACGTcount: A:0.74, C:0.01, G:0.05, T:0.20
Consensus pattern (17 bp):
AAATAATAAAATAAAAA
Found at i:903630 original size:94 final size:94
Alignment explanation
Indices: 903518--904489 Score: 1332
Period size: 94 Copynumber: 10.0 Consensus size: 94
903508 TGGAACTGGA
* * * *
903518 AAATTGTTTATTGACAACCAGCGGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGCCTGGAGTCCA
1 AAATTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCA
903583 ATATCCTTCGTTGTGAAGTTGAAATTGGG
66 ATATCCTTCGTTGTGAAGTTGAAATTGGG
*
903612 AAATTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCTA
1 AAATTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCA
*
903677 ATATCCTTCGCTGTGAAGTTGAAATTGGG
66 ATATCCTTCGTTGTGAAGTTGAAATTGGG
*
903706 AAATTGTTTGTTGACAACCAGCGGACCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCA
1 AAATTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCA
*
903771 ATGTCCTTCGTTGTGAAGTTGAAATTGGG
66 ATATCCTTCGTTGTGAAGTTGAAATTGGG
*
903800 AAATTGTTTGTTGACAACCAGCGGTCCCTTCGTCATGAAGTTGAACTTGCGTTGTCTGGAGTCCA
1 AAATTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCA
* * *
903865 ATATCCTTCGCTGTGAAATTGAAATTGGA
66 ATATCCTTCGTTGTGAAGTTGAAATTGGG
*
903894 AAATTGTTTGTTGACAACCAGCGGTCCCTTCGTTGTGAAGTTGAACTTGCGTTGTCTGGAGTCCA
1 AAATTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCA
*
903959 ATATCCTTCGCTGTGAAGTTGAAATTGGG
66 ATATCCTTCGTTGTGAAGTTGAAATTGGG
*
903988 AAATTGTTTGTTGACAACCAGCGGTCCCTTCGTTGTGAAGTTGAACTTGCGTTGTCTGGAGTCCA
1 AAATTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCA
*
904053 ATATCCTTCGCTGTGAAGTTGAAATTGGG
66 ATATCCTTCGTTGTGAAGTTGAAATTGGG
* * *
904082 AAATTGTTTGTTGACAACCAGCGGTTCCTTCGTTGTGAAGTTGAACTTACGTTGTCTGGAGTCCA
1 AAATTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCA
904147 ATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTG
66 ATATCCTTCGTTGTGAAGTTGAAATT-G----G-----G
* *
904186 AGAAGTTGTTTATTGACAACCAGTGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
1 A-AA-TTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
*
904251 CAATATCCTTCATTGTGAAGTTGAAATTGGCTCTGAAATTG
64 CAATATCCTTCGTTGTGAAGTTGAAATT-G----G-----G
* *
904292 AGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTATCTGGAGTC
1 A-AA-TTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
904357 CAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTG
64 CAATATCCTTCGTTGTGAAGTTGAAATT-G----G-----G
* * *
904398 AGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGCCGTGAATTTGAACTTGCGTTGTCTGGAGTC
1 A-AA-TTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
* * * * *
904463 CAATTTTCTTCGCTGCGAAGTAGAAAT
64 CAATATCCTTCGTTGTGAAGTTGAAAT
904490 AGACTCTGAA
Statistics
Matches: 826, Mismatches: 40, Indels: 12
0.94 0.05 0.01
Matches are distributed among these distances:
94 538 0.65
95 1 0.00
99 1 0.00
104 2 0.00
105 2 0.00
106 282 0.34
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (94 bp):
AAATTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCA
ATATCCTTCGTTGTGAAGTTGAAATTGGG
Found at i:904257 original size:106 final size:106
Alignment explanation
Indices: 904072--904499 Score: 694
Period size: 106 Copynumber: 4.0 Consensus size: 106
904062 GCTGTGAAGT
* * * * * *
904072 TGAAATTGGGAAATTGTTTGTTGACAACCAGCGGTTCCTTCGTTGTGAAGTTGAACTTACGTTGT
1 TGAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
904137 CTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTC
66 CTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTC
*
904178 TGAAATTGAGAAGTTGTTTATTGACAACCAGTGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
1 TGAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
*
904243 CTGGAGTCCAATATCCTTCATTGTGAAGTTGAAATTGGCTC
66 CTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTC
*
904284 TGAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTAT
1 TGAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
904349 CTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTC
66 CTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTC
* *
904390 TGAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGCCGTGAATTTGAACTTGCGTTGT
1 TGAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
* * * * * * *
904455 CTGGAGTCCAATTTTCTTCGCTGCGAAGTAGAAATAGACTC
66 CTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTC
904496 TGAA
1 TGAA
904500 TGAAGTTGGA
Statistics
Matches: 301, Mismatches: 21, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
106 301 1.00
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.34
Consensus pattern (106 bp):
TGAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
CTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTC
Done.