Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007889.1 Hibiscus syriacus cultivar Beakdansim tig00110271_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1663484
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 8 of 9
Found at i:1379281 original size:19 final size:19
Alignment explanation
Indices: 1379257--1379303 Score: 76
Period size: 19 Copynumber: 2.5 Consensus size: 19
1379247 ACATTCACAT
1379257 ACAAAATTATAAATCGTAA
1 ACAAAATTATAAATCGTAA
* *
1379276 ACAAAATTATAAATCTTAT
1 ACAAAATTATAAATCGTAA
1379295 ACAAAATTA
1 ACAAAATTA
1379304 ACCCTACATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.57, C:0.11, G:0.02, T:0.30
Consensus pattern (19 bp):
ACAAAATTATAAATCGTAA
Found at i:1381600 original size:22 final size:23
Alignment explanation
Indices: 1381572--1381626 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 23
1381562 AACCTGCATT
*
1381572 TATAATAAAAT-TTATCATTTTA
1 TATAATAAAATACTATCATTTTA
*
1381594 TATAATAACTATACTATCATTTTA
1 TATAATAA-AATACTATCATTTTA
1381618 TATAA-AAAA
1 TATAATAAAA
1381627 CAAAAACGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
22 9 0.32
23 4 0.14
24 15 0.54
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (23 bp):
TATAATAAAATACTATCATTTTA
Found at i:1383883 original size:182 final size:181
Alignment explanation
Indices: 1383571--1384176 Score: 946
Period size: 182 Copynumber: 3.3 Consensus size: 181
1383561 TTATTACGCG
* * ** *
1383571 TACTT-ATTAAAGTATCGACACTTTTAATATATACAATAGTGCTTTACCGGTTTTGTCATTTCGA
1 TACTTAATTAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCGGTTTTGTCATTTCGA
* * *
1383635 GACCGGTTTTGTCATATTTTTACATGTTATATCGTTATGAATCGATACATTGTTATAAAGTATCG
66 GACCGGTTTTGTCATATTTTTACCTGTTATATCGTTATGGATCGATACATTTTTATAAAGTATCG
* * *
1383700 ACAGTTTATAGGCGCTATTATTGTTTCTCTTTTAAATTCCCAAAGTGTCGA
131 ACACTTTATAGGCGCTATTACTGCTTCTCTTTTAAATTCCCAAAGTGTCGA
*
1383751 TACTTACATTAAAGTATCGACACTTTCAATATATCCGTTAGCGCTTTACCGGTTTTGTCATTTCG
1 TACTTA-ATTAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCGGTTTTGTCATTTCG
* *
1383816 AGATCTGTTTTGTCATATTTTTACCTGTTATATCGTTATGGATCGATACATTTTTATAAAGTATC
65 AGACCGGTTTTGTCATATTTTTACCTGTTATATCGTTATGGATCGATACATTTTTATAAAGTATC
1383881 GACACTTTATAGGCGCTATTACTGCTTCTCTTTTAAATTCCCAAAGTGTCGA
130 GACACTTTATAGGCGCTATTACTGCTTCTCTTTTAAATTCCCAAAGTGTCGA
* * *
1383933 TACTTATATTAAAGTGTCGACACTTTCAATATATCCGGTATCTCTTTACCGGTTTTGT-ATTTTC
1 TACTTA-ATTAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCGGTTTTGTCA-TTTC
*
1383997 GAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTAT
64 GAGACCGGTTTTGTCATATTTTTACCTGTTATATCGTTATGGATCGATACATTTTTATAAAGTAT
*
1384062 CGACACTTTATAGGCGTTATTACTGCTTCTCTTTTAAATTCCCAAAGTGTCGA
129 CGACACTTTATAGGCGCTATTACTGCTTCTCTTTTAAATTCCCAAAGTGTCGA
* ** *
1384115 TACTTATTTCAATCTAATCGATACTTTCAATATATCCGGTAGCGCTTTACCGGTTTTGTCAT
1 TACTTAATT-AAAGT-ATCGACACTTTCAATATATCCGGTAGCGCTTTACCGGTTTTGTCAT
1384177 ATTTTTACTT
Statistics
Matches: 391, Mismatches: 29, Indels: 9
0.91 0.07 0.02
Matches are distributed among these distances:
180 5 0.01
181 3 0.01
182 342 0.87
183 40 0.10
184 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.15, T:0.42
Consensus pattern (181 bp):
TACTTAATTAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCGGTTTTGTCATTTCGA
GACCGGTTTTGTCATATTTTTACCTGTTATATCGTTATGGATCGATACATTTTTATAAAGTATCG
ACACTTTATAGGCGCTATTACTGCTTCTCTTTTAAATTCCCAAAGTGTCGA
Found at i:1384893 original size:2 final size:2
Alignment explanation
Indices: 1384886--1384916 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
1384876 AATTTTGTAA
1384886 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1384917 ATTTTATGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1385129 original size:18 final size:19
Alignment explanation
Indices: 1385106--1385147 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
1385096 CAGTAATCCT
1385106 ATTCC-CTGATAATCTTAC
1 ATTCCACTGATAATCTTAC
*
1385124 ATTCCCACTGGTAATCTTAC
1 ATT-CCACTGATAATCTTAC
1385144 ATTC
1 ATTC
1385148 TGTGAACCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 3 0.14
19 3 0.14
20 15 0.71
ACGTcount: A:0.26, C:0.29, G:0.07, T:0.38
Consensus pattern (19 bp):
ATTCCACTGATAATCTTAC
Found at i:1385766 original size:15 final size:15
Alignment explanation
Indices: 1385743--1385776 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
1385733 TTTTCTTCTT
* *
1385743 CTTTTTTTCTTTTCA
1 CTTTCTTTCTCTTCA
1385758 CTTTCTTTCTCTTCA
1 CTTTCTTTCTCTTCA
1385773 CTTT
1 CTTT
1385777 TCTTCATTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.06, C:0.26, G:0.00, T:0.68
Consensus pattern (15 bp):
CTTTCTTTCTCTTCA
Found at i:1387206 original size:15 final size:15
Alignment explanation
Indices: 1387188--1387250 Score: 56
Period size: 15 Copynumber: 4.1 Consensus size: 15
1387178 CGAAAGAAGA
*
1387188 AAAGTGAAGAGAAAG
1 AAAGTGAAGAAAAAG
1387203 AAAGTGAAGAAAAATG
1 AAAGTGAAGAAAAA-G
* *
1387219 -AAGAGAAAAAAGAAG
1 AAAGTGAAGAAA-AAG
*
1387234 AAAAGTGAAGAGAAAG
1 -AAAGTGAAGAAAAAG
1387250 A
1 A
1387251 TGGGGAATGG
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
15 24 0.63
16 6 0.16
17 8 0.21
ACGTcount: A:0.65, C:0.00, G:0.29, T:0.06
Consensus pattern (15 bp):
AAAGTGAAGAAAAAG
Found at i:1387884 original size:34 final size:33
Alignment explanation
Indices: 1387844--1387911 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 33
1387834 TGGTCAAATG
*
1387844 GGTCAACAGGTCGATCAAATAGGTTCGATCGAAT
1 GGTCAACAGGTCGATCAAATAAGTTCGATC-AAT
* *
1387878 GGTCAACGGGTTGATCAAATAAGTTCGATCAAT
1 GGTCAACAGGTCGATCAAATAAGTTCGATCAAT
1387911 G
1 G
1387912 TGTTAGTCAA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
33 4 0.13
34 27 0.87
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.25
Consensus pattern (33 bp):
GGTCAACAGGTCGATCAAATAAGTTCGATCAAT
Found at i:1388477 original size:37 final size:37
Alignment explanation
Indices: 1388422--1388546 Score: 124
Period size: 37 Copynumber: 3.5 Consensus size: 37
1388412 TAATTTATGT
1388422 TTTGGTCACTTA-ATTATTATTTAGGGTAAACTACCTA
1 TTTGGTCACTTATA-TATTATTTAGGGTAAACTACCTA
**
1388459 TTTGGTCACTTATATATTATTT----T-ATTTA--TA
1 TTTGGTCACTTATATATTATTTAGGGTAAACTACCTA
1388489 TTTTGGTCACTTGAT-TATTATTTAGGGTAAACTACCTA
1 -TTTGGTCACTT-ATATATTATTTAGGGTAAACTACCTA
* *
1388527 TTTGTTCGCTTATATATTAT
1 TTTGGTCACTTATATATTAT
1388547 CTAATATAAT
Statistics
Matches: 71, Mismatches: 6, Indels: 22
0.72 0.06 0.22
Matches are distributed among these distances:
30 2 0.03
31 19 0.27
32 5 0.07
33 1 0.01
35 1 0.01
36 5 0.07
37 35 0.49
38 3 0.04
ACGTcount: A:0.26, C:0.11, G:0.12, T:0.50
Consensus pattern (37 bp):
TTTGGTCACTTATATATTATTTAGGGTAAACTACCTA
Found at i:1388487 original size:68 final size:68
Alignment explanation
Indices: 1388374--1388631 Score: 325
Period size: 68 Copynumber: 3.9 Consensus size: 68
1388364 TTAGGGTTTT
* *
1388374 TTTA-GGTAAACTACCTATTTGGTCACTTATGTATTATCTAATTTATGTTTTGGTCACTTAATTA
1 TTTAGGGTAAACTACCTATTTGGTCACTTATATATTATCTAATTTATATTTTGGTCACTTAATTA
1388438 TTA
66 TTA
* * *
1388441 TTTAGGGTAAACTACCTATTTGGTCACTTATATATTATTTTATTTATATTTTGGTCACTTGATTA
1 TTTAGGGTAAACTACCTATTTGGTCACTTATATATTATCTAATTTATATTTTGGTCACTTAATTA
1388506 TTA
66 TTA
* * *
1388509 TTTAGGGTAAACTACCTATTTGTTCGCTTATATATTATCTAA--TATA--AT--TCA-TATATAT
1 TTTAGGGTAAACTACCTATTTGGTCACTTATATATTATCTAATTTATATTTTGGTCACT-TA-AT
*
1388567 TTTTA
64 TATTA
* * * *
1388572 TTTAGGGTAAACTACCTATTTGGTCAATTACATATCATCTAATTTATGTTTTGGTCACTT
1 TTTAGGGTAAACTACCTATTTGGTCACTTATATATTATCTAATTTATATTTTGGTCACTT
1388632 GATTTTTTTT
Statistics
Matches: 162, Mismatches: 19, Indels: 18
0.81 0.10 0.09
Matches are distributed among these distances:
61 1 0.01
62 4 0.02
63 43 0.27
64 1 0.01
65 3 0.02
66 4 0.02
67 5 0.03
68 96 0.59
69 4 0.02
70 1 0.01
ACGTcount: A:0.28, C:0.12, G:0.11, T:0.49
Consensus pattern (68 bp):
TTTAGGGTAAACTACCTATTTGGTCACTTATATATTATCTAATTTATATTTTGGTCACTTAATTA
TTA
Found at i:1396805 original size:2 final size:2
Alignment explanation
Indices: 1396798--1396842 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
1396788 GATTTCGTAT
1396798 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1396840 TA T
1 TA T
1396843 GGAGTGGTGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1397441 original size:18 final size:18
Alignment explanation
Indices: 1397417--1397457 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
1397407 GATCAATTTC
*
1397417 AATTTGGGTTAACCTTTA
1 AATTTGGGTCAACCTTTA
*
1397435 GATTTGGGTCAACCTTTA
1 AATTTGGGTCAACCTTTA
1397453 AATTT
1 AATTT
1397458 TCAGGTAAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.27, C:0.12, G:0.17, T:0.44
Consensus pattern (18 bp):
AATTTGGGTCAACCTTTA
Found at i:1397758 original size:36 final size:35
Alignment explanation
Indices: 1397705--1397776 Score: 99
Period size: 36 Copynumber: 2.0 Consensus size: 35
1397695 GAAGTGATGG
* * *
1397705 TTAACTAGCATATAATATAAGATGAGAATAAAACA
1 TTAACTAGCATATAATATAAAACGAAAATAAAACA
*
1397740 TTAACTAGTAGTATAATATAAAACGAAAATAAAACA
1 TTAACTAGCA-TATAATATAAAACGAAAATAAAACA
1397776 T
1 T
1397777 ATATCATTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
35 9 0.28
36 23 0.72
ACGTcount: A:0.56, C:0.08, G:0.10, T:0.26
Consensus pattern (35 bp):
TTAACTAGCATATAATATAAAACGAAAATAAAACA
Found at i:1397956 original size:16 final size:16
Alignment explanation
Indices: 1397935--1397973 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
1397925 GGTTCTCTTT
* *
1397935 TTTCGGTTTGGGTTAA
1 TTTCGGTTCGAGTTAA
*
1397951 TTTCGGTTCGAGTTAC
1 TTTCGGTTCGAGTTAA
1397967 TTTCGGT
1 TTTCGGT
1397974 CCAACTAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.10, C:0.13, G:0.28, T:0.49
Consensus pattern (16 bp):
TTTCGGTTCGAGTTAA
Found at i:1400666 original size:31 final size:31
Alignment explanation
Indices: 1400603--1400666 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
1400593 GGGTCTGATT
*
1400603 AATATCAAATTAGTTGACTTTGAATCGTGTC
1 AATATCAAATTAGTTGACTTTGAATCGGGTC
* **
1400634 AATATCAAATTAGTTGATTTTGGTTCGGGTC
1 AATATCAAATTAGTTGACTTTGAATCGGGTC
1400665 AA
1 AA
1400667 CCATTATATT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (31 bp):
AATATCAAATTAGTTGACTTTGAATCGGGTC
Found at i:1401935 original size:28 final size:28
Alignment explanation
Indices: 1401902--1401962 Score: 104
Period size: 28 Copynumber: 2.2 Consensus size: 28
1401892 ACCCATTTAA
*
1401902 AACATGTAATCTTGTACTTAACCTTTGT
1 AACATGTAATCTTGTACTTAACATTTGT
*
1401930 AACATGTTATCTTGTACTTAACATTTGT
1 AACATGTAATCTTGTACTTAACATTTGT
1401958 AACAT
1 AACAT
1401963 ACCATATAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.31, C:0.16, G:0.10, T:0.43
Consensus pattern (28 bp):
AACATGTAATCTTGTACTTAACATTTGT
Found at i:1404871 original size:67 final size:67
Alignment explanation
Indices: 1404774--1404902 Score: 163
Period size: 67 Copynumber: 1.9 Consensus size: 67
1404764 TTTCTCAATA
* *
1404774 CAAATTTTGTCTCACTTTAGACAGTTTTCCTCAAGACA-TGAACACTTGAGAATGTTTTTCTTAA
1 CAAATTTCGTCTCACTTGAGACAGTTTTCCTCAAGACACT-AACACTTGAGAATGTTTTTCTTAA
1404838 AAT
65 AAT
* * * * *
1404841 CAAATTTCGTCTTACTTGAGACA-TTATTCCTTAAGACACTAGCATTTGAGATTGTTTTTCTT
1 CAAATTTCGTCTCACTTGAGACAGTT-TTCCTCAAGACACTAACACTTGAGAATGTTTTTCTT
1404903 CATCTCGCTT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
66 2 0.04
67 50 0.94
68 1 0.02
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (67 bp):
CAAATTTCGTCTCACTTGAGACAGTTTTCCTCAAGACACTAACACTTGAGAATGTTTTTCTTAAA
AT
Found at i:1405393 original size:19 final size:19
Alignment explanation
Indices: 1405369--1405407 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
1405359 GTCAAAATAG
1405369 GGCTAGACGTCCTCAACAC
1 GGCTAGACGTCCTCAACAC
*
1405388 GGCTAGACGTCCTTAACAC
1 GGCTAGACGTCCTCAACAC
1405407 G
1 G
1405408 AAGGAACACT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.33, G:0.23, T:0.18
Consensus pattern (19 bp):
GGCTAGACGTCCTCAACAC
Found at i:1405867 original size:24 final size:23
Alignment explanation
Indices: 1405815--1405868 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 23
1405805 TCAAAAGTAA
*
1405815 ATAAATAGAATTCAACTTAATTTG
1 ATAAATAGAACTCAAC-TAATTTG
1405839 A-AAATAGAAACTCAA-TAATTTG
1 ATAAATAG-AACTCAACTAATTTG
1405861 CATAAATA
1 -ATAAATA
1405869 TAATATTGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
22 7 0.27
23 7 0.27
24 12 0.46
ACGTcount: A:0.52, C:0.09, G:0.07, T:0.31
Consensus pattern (23 bp):
ATAAATAGAACTCAACTAATTTG
Found at i:1406397 original size:23 final size:23
Alignment explanation
Indices: 1406371--1406449 Score: 86
Period size: 23 Copynumber: 3.4 Consensus size: 23
1406361 CACTGAAGTG
*
1406371 CCACGTAAAAATGTCCCGAAGGA
1 CCACGTAGAAATGTCCCGAAGGA
* * *
1406394 CCACATAGATATGTCCTGAAGGA
1 CCACGTAGAAATGTCCCGAAGGA
* *
1406417 CCGCGTAGAAATGTCTCGAAGGA
1 CCACGTAGAAATGTCCCGAAGGA
**
1406440 CTGCGTAGAA
1 CCACGTAGAA
1406450 CCCTCGACTC
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.18
Consensus pattern (23 bp):
CCACGTAGAAATGTCCCGAAGGA
Found at i:1406545 original size:14 final size:14
Alignment explanation
Indices: 1406526--1406589 Score: 83
Period size: 14 Copynumber: 4.4 Consensus size: 14
1406516 TTATACCATT
1406526 TCACATAGCTTATA
1 TCACATAGCTTATA
**
1406540 TCACATAGACAAATAA
1 TCACATAG-CTTAT-A
*
1406556 TCACATAGATTATA
1 TCACATAGCTTATA
1406570 TCACATAGCTTATA
1 TCACATAGCTTATA
1406584 TCACAT
1 TCACAT
1406590 TTTCATATAA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
14 28 0.67
15 5 0.12
16 9 0.21
ACGTcount: A:0.42, C:0.20, G:0.06, T:0.31
Consensus pattern (14 bp):
TCACATAGCTTATA
Found at i:1411018 original size:14 final size:14
Alignment explanation
Indices: 1410981--1411033 Score: 54
Period size: 14 Copynumber: 3.6 Consensus size: 14
1410971 CAAATAGCTT
1410981 ATATCACATAGA-C
1 ATATCACATAGATC
1410994 AAATAATCACATAGATC
1 --AT-ATCACATAGATC
* *
1411011 ATATCACATAGCTT
1 ATATCACATAGATC
1411025 ATATCACAT
1 ATATCACAT
1411034 TTTCATATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
14 19 0.56
15 4 0.12
16 10 0.29
17 1 0.03
ACGTcount: A:0.45, C:0.21, G:0.06, T:0.28
Consensus pattern (14 bp):
ATATCACATAGATC
Found at i:1411847 original size:23 final size:23
Alignment explanation
Indices: 1411770--1411847 Score: 74
Period size: 23 Copynumber: 3.5 Consensus size: 23
1411760 CACCGCAGCT
*
1411770 CACATAA-TTTGCACCGAAGTGC
1 CACATAATTTTGCACCAAAGTGC
*
1411792 CACATAATTGT-C-CCAAAG-GAC
1 CACATAATTTTGCACCAAAGTG-C
** *
1411813 CACATAGGTTTGCACTAAAGTGC
1 CACATAATTTTGCACCAAAGTGC
1411836 CACATAATTTTG
1 CACATAATTTTG
1411848 TACCGAAGGA
Statistics
Matches: 43, Mismatches: 8, Indels: 9
0.72 0.13 0.15
Matches are distributed among these distances:
20 1 0.02
21 14 0.33
22 9 0.21
23 18 0.42
24 1 0.02
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (23 bp):
CACATAATTTTGCACCAAAGTGC
Found at i:1414087 original size:35 final size:35
Alignment explanation
Indices: 1414041--1414109 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
1414031 AACTTGATGT
1414041 GAACTCTTTTTCATGGCATGCAACCATCCCCAGAA
1 GAACTCTTTTTCATGGCATGCAACCATCCCCAGAA
1414076 GAACTCTTTTTCATGGCATGCAACCATCCCCAGA
1 GAACTCTTTTTCATGGCATGCAACCATCCCCAGA
1414110 CTTTAAATCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.28, C:0.32, G:0.14, T:0.26
Consensus pattern (35 bp):
GAACTCTTTTTCATGGCATGCAACCATCCCCAGAA
Found at i:1414902 original size:37 final size:38
Alignment explanation
Indices: 1414830--1414904 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
1414820 TACTTGCTCC
*
1414830 CCAATTACTTAGATTGAATCATTTTTTATTCGATGTCA
1 CCAATTACTTAGATTGAATCACTTTTTATTCGATGTCA
1414868 CCAATTACTTAGATTGAATC-CTTTTTATTCGATGTCA
1 CCAATTACTTAGATTGAATCACTTTTTATTCGATGTCA
1414905 AAAGTAATTC
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
37 16 0.44
38 20 0.56
ACGTcount: A:0.28, C:0.17, G:0.11, T:0.44
Consensus pattern (38 bp):
CCAATTACTTAGATTGAATCACTTTTTATTCGATGTCA
Found at i:1416274 original size:3 final size:3
Alignment explanation
Indices: 1416266--1416293 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
1416256 CCTGGGATCA
1416266 ATC ATC ATC ATC ATC ATC ATC ATC ATC A
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC A
1416294 CACAATACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.32, G:0.00, T:0.32
Consensus pattern (3 bp):
ATC
Found at i:1416708 original size:11 final size:11
Alignment explanation
Indices: 1416694--1416718 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
1416684 GTTTAATTAA
1416694 TTAAATTTGAT
1 TTAAATTTGAT
1416705 TTAAATTTGAT
1 TTAAATTTGAT
1416716 TTA
1 TTA
1416719 GATTAAACTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (11 bp):
TTAAATTTGAT
Found at i:1416925 original size:21 final size:21
Alignment explanation
Indices: 1416894--1416970 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
1416884 ATTCTGACTA
* * *
1416894 TCGCATTGCGATTTCCCAAAT
1 TCGCGTTGCGATTTTCCTAAT
*
1416915 TCGTGTTGCGATTTTCCTAAT
1 TCGCGTTGCGATTTTCCTAAT
1416936 TCGCGTTGCGATTTTCCTAAT
1 TCGCGTTGCGATTTTCCTAAT
*
1416957 TCGCATTGCGATTT
1 TCGCGTTGCGATTT
1416971 ACATAGCGCC
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 50 1.00
ACGTcount: A:0.17, C:0.23, G:0.18, T:0.42
Consensus pattern (21 bp):
TCGCGTTGCGATTTTCCTAAT
Found at i:1417518 original size:21 final size:20
Alignment explanation
Indices: 1417457--1417547 Score: 116
Period size: 20 Copynumber: 4.5 Consensus size: 20
1417447 TTCTAAACTT
1417457 AAAATCGCAACATGA-AAATG
1 AAAATCGCAACA-GAGAAATG
1417477 AAAATCGCAACACGA-AAATG
1 AAAATCGCAACA-GAGAAATG
**
1417497 ACTATCGCAACGAGAGAAATG
1 AAAATCGCAAC-AGAGAAATG
1417518 AAAATCGCAAC-GAGAAATG
1 AAAATCGCAACAGAGAAATG
1417537 AAAATCGCAAC
1 AAAATCGCAAC
1417548 GATATAATCG
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
19 19 0.30
20 30 0.47
21 15 0.23
ACGTcount: A:0.52, C:0.19, G:0.18, T:0.12
Consensus pattern (20 bp):
AAAATCGCAACAGAGAAATG
Found at i:1417621 original size:20 final size:20
Alignment explanation
Indices: 1417565--1417627 Score: 92
Period size: 20 Copynumber: 3.1 Consensus size: 20
1417555 TCGCATTGCG
**
1417565 ATTCTCTCGTTGCGATAGTC
1 ATTCTCTCGTTGCGATTTTC
1417585 ATT-TCTGCGTTGCGATTTTC
1 ATTCTCT-CGTTGCGATTTTC
1417605 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
1417625 ATT
1 ATT
1417628 TCAACCAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
19 3 0.08
20 33 0.85
21 3 0.08
ACGTcount: A:0.13, C:0.22, G:0.17, T:0.48
Consensus pattern (20 bp):
ATTCTCTCGTTGCGATTTTC
Found at i:1419479 original size:94 final size:94
Alignment explanation
Indices: 1419263--1419730 Score: 725
Period size: 94 Copynumber: 5.1 Consensus size: 94
1419253 TAGATTGTTT
* * *
1419263 AGTAAATTTATTCAGTTGCTGCCAATACTGCTAAAC--TGT-TT-ATTAACACTGTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
*
1419324 ATTTGTCTTT-TGTTGTCTTTTGGTTG-A
66 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
*
1419351 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACATTGTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
*
1419416 ATTTCTCTTTGTTTTGTCTTTTGGTTGAA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
* * *
1419445 AGTATATTTGTTTGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
1419510 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
* * *
1419539 AGTAAATTTGTTCGGTTGCTGTCAATTCTGCTAAACTGTGTATTCTTTAACAGTGTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
*
1419604 ATTTGTCTTTGTTTTGTCCTTTGGTTGAA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
* * * * *
1419633 AGCAAATTTATTTGTTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAATACTCTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
1419698 ATTTGTCTTTGTTTTGTCTTTTGGTTG-A
66 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
1419726 AGTAA
1 AGTAA
1419731 TGCAATCCAT
Statistics
Matches: 348, Mismatches: 26, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
88 34 0.10
90 3 0.01
91 2 0.01
92 27 0.08
93 20 0.06
94 262 0.75
ACGTcount: A:0.21, C:0.12, G:0.19, T:0.47
Consensus pattern (94 bp):
AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:1419921 original size:33 final size:33
Alignment explanation
Indices: 1419874--1420005 Score: 165
Period size: 33 Copynumber: 3.8 Consensus size: 33
1419864 CTATAATCGT
* *
1419874 GTTGCGATTTTCATTCCGCATTGCGATTCTCTC
1 GTTGCGATTTTCATTTCGCGTTGCGATTCTCTC
*
1419907 GTTGTGATTTTCATTTCGCGTTGCGATTCTCTC
1 GTTGCGATTTTCATTTCGCGTTGCGATTCTCTC
*
1419940 GTTGCGATTTTCGTTTCGCGTTGCGATTTTCATTCTCTC
1 GTTGCGATTTTCATTTCGCGTTGCG------ATTCTCTC
*
1419979 GTTGTGATTTTCATTTCGCGTTGCGAT
1 GTTGCGATTTTCATTTCGCGTTGCGAT
1420006 AGTCATTTTT
Statistics
Matches: 86, Mismatches: 7, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
33 55 0.64
39 31 0.36
ACGTcount: A:0.10, C:0.22, G:0.21, T:0.47
Consensus pattern (33 bp):
GTTGCGATTTTCATTTCGCGTTGCGATTCTCTC
Found at i:1420011 original size:19 final size:19
Alignment explanation
Indices: 1419874--1420029 Score: 116
Period size: 19 Copynumber: 8.6 Consensus size: 19
1419864 CTATAATCGT
*
1419874 GTTGCGATTTTCATTCCGC
1 GTTGCGATTTTCATTTCGC
* *
1419893 ATTGCGA--TTC---TCTC
1 GTTGCGATTTTCATTTCGC
*
1419907 GTTGTGATTTTCATTTCGC
1 GTTGCGATTTTCATTTCGC
*
1419926 GTTGCGA--TTC---TCTC
1 GTTGCGATTTTCATTTCGC
*
1419940 GTTGCGATTTTCGTTTCGC
1 GTTGCGATTTTCATTTCGC
*
1419959 GTTGCGATTTTCATTCTCTC
1 GTTGCGATTTTCATT-TCGC
*
1419979 GTTGTGATTTTCATTTCGC
1 GTTGCGATTTTCATTTCGC
** *
1419998 GTTGCGATAGTCATTTTTCAC
1 GTTGCGATTTTCA--TTTCGC
1420019 GTTGCGATTTT
1 GTTGCGATTTT
1420030 AAGTTCCAGA
Statistics
Matches: 105, Mismatches: 19, Indels: 24
0.71 0.13 0.16
Matches are distributed among these distances:
14 17 0.16
16 6 0.06
17 6 0.06
19 45 0.43
20 17 0.16
21 14 0.13
ACGTcount: A:0.11, C:0.21, G:0.21, T:0.47
Consensus pattern (19 bp):
GTTGCGATTTTCATTTCGC
Found at i:1420012 original size:39 final size:38
Alignment explanation
Indices: 1419899--1420012 Score: 148
Period size: 39 Copynumber: 3.1 Consensus size: 38
1419889 CCGCATTGCG
1419899 ATTCTCTCGTTGTGATTTTCATTTCGCGTTGC---G--
1 ATTCTCTCGTTGTGATTTTCATTTCGCGTTGCGATGTC
* * *
1419932 ATTCTCTCGTTGCGATTTTCGTTTCGCGTTGCGATTTTC
1 ATTCTCTCGTTGTGATTTTCATTTCGCGTTGCGA-TGTC
1419971 ATTCTCTCGTTGTGATTTTCATTTCGCGTTGCGATAGTC
1 ATTCTCTCGTTGTGATTTTCATTTCGCGTTGCGAT-GTC
1420010 ATT
1 ATT
1420013 TTTCACGTTG
Statistics
Matches: 68, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
33 30 0.44
38 1 0.01
39 37 0.54
ACGTcount: A:0.11, C:0.21, G:0.20, T:0.48
Consensus pattern (38 bp):
ATTCTCTCGTTGTGATTTTCATTTCGCGTTGCGATGTC
Found at i:1420507 original size:21 final size:21
Alignment explanation
Indices: 1420483--1420549 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
1420473 TCATTCCTCG
1420483 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
1420504 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
1420525 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
1420546 AGAG
1 AGAG
1420550 CCCGATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:1420509 original size:42 final size:42
Alignment explanation
Indices: 1420456--1420549 Score: 102
Period size: 42 Copynumber: 2.2 Consensus size: 42
1420446 CACTCTTTAT
* *
1420456 CGTTGAAGAGGCCCCTATCATTCCTCG-AGA-GTCCCCTCCCAC
1 CGTTCAAGAGGCCACTATCA-TCCTCGAAGAGGT-CCCTCCCAC
* * *
1420498 CGTTCAAGAGGCCACTGTCATCGTTGAAGAGGTCCCTCCCAC
1 CGTTCAAGAGGCCACTATCATCCTCGAAGAGGTCCCTCCCAC
*
1420540 CATTCAAGAG
1 CGTTCAAGAG
1420550 CCCGATTCAC
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
41 4 0.09
42 38 0.86
43 2 0.05
ACGTcount: A:0.22, C:0.35, G:0.21, T:0.21
Consensus pattern (42 bp):
CGTTCAAGAGGCCACTATCATCCTCGAAGAGGTCCCTCCCAC
Found at i:1421906 original size:13 final size:14
Alignment explanation
Indices: 1421898--1421934 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
1421888 TATTGTTTAA
1421898 TTGATTTGTAAAAG
1 TTGATTTGTAAAAG
*
1421912 ATGATTTGTAAAAG
1 TTGATTTGTAAAAG
1421926 TTGATTTGT
1 TTGATTTGT
1421935 TTAATTGATG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.32, C:0.00, G:0.22, T:0.46
Consensus pattern (14 bp):
TTGATTTGTAAAAG
Found at i:1422057 original size:19 final size:17
Alignment explanation
Indices: 1422041--1422091 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 17
1422031 AAAAATGACT
1422041 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATG--A
*
1422060 ATCGCAA--CGAGA-GA
1 ATCGCAATGCGAAATGA
1422074 ATCGCAATGCGAAATGA
1 ATCGCAATGCGAAATGA
1422091 A
1 A
1422092 AATCGCAACG
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
14 8 0.30
16 5 0.19
17 7 0.26
19 7 0.26
ACGTcount: A:0.45, C:0.18, G:0.24, T:0.14
Consensus pattern (17 bp):
ATCGCAATGCGAAATGA
Found at i:1422083 original size:33 final size:33
Alignment explanation
Indices: 1422041--1422134 Score: 145
Period size: 33 Copynumber: 2.8 Consensus size: 33
1422031 AAAAATGACT
* *
1422041 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1422074 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
*
1422107 ATCGCAACGCGAAACT-AAAATCGCAACG
1 ATCGCAATGCGAAA-TGAAAATCGCAACG
1422135 CGAAACTAAA
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
33 56 0.98
34 1 0.02
ACGTcount: A:0.46, C:0.22, G:0.20, T:0.12
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAA
Found at i:1422097 original size:19 final size:18
Alignment explanation
Indices: 1422041--1422139 Score: 72
Period size: 19 Copynumber: 5.7 Consensus size: 18
1422031 AAAAATGACT
1422041 ATCGCAATGCGAAATGAAA
1 ATCGCAA-GCGAAATGAAA
*
1422060 ATCGCAA-CG--A-GAGA
1 ATCGCAAGCGAAATGAAA
1422074 ATCGCAATGCGAAATGAAA
1 ATCGCAA-GCGAAATGAAA
*
1422093 ATCGCAA-CG--A-CAAA
1 ATCGCAAGCGAAATGAAA
1422107 ATCGCAACGCGAAACT-AAA
1 ATCGCAA-GCGAAA-TGAAA
1422126 ATCGCAACGCGAAA
1 ATCGCAA-GCGAAA
1422140 CTAAATTCGC
Statistics
Matches: 66, Mismatches: 3, Indels: 22
0.73 0.03 0.24
Matches are distributed among these distances:
14 20 0.30
15 2 0.03
16 4 0.06
17 4 0.06
18 2 0.03
19 34 0.52
ACGTcount: A:0.46, C:0.22, G:0.20, T:0.11
Consensus pattern (18 bp):
ATCGCAAGCGAAATGAAA
Found at i:1422140 original size:19 final size:19
Alignment explanation
Indices: 1422073--1422149 Score: 85
Period size: 19 Copynumber: 4.3 Consensus size: 19
1422063 GCAACGAGAG
*
1422073 AATCGCAATGCGAAA-TGAA
1 AATCGCAACGCGAAACT-AA
1422092 AATCGCAA--CG--AC-AA
1 AATCGCAACGCGAAACTAA
1422106 AATCGCAACGCGAAACTAA
1 AATCGCAACGCGAAACTAA
1422125 AATCGCAACGCGAAACTAA
1 AATCGCAACGCGAAACTAA
*
1422144 ATTCGC
1 AATCGC
1422150 GTTACGATTT
Statistics
Matches: 51, Mismatches: 1, Indels: 12
0.80 0.02 0.19
Matches are distributed among these distances:
14 10 0.20
15 1 0.02
16 2 0.04
17 2 0.04
18 2 0.04
19 34 0.67
ACGTcount: A:0.45, C:0.25, G:0.17, T:0.13
Consensus pattern (19 bp):
AATCGCAACGCGAAACTAA
Found at i:1422196 original size:33 final size:33
Alignment explanation
Indices: 1422149--1422272 Score: 203
Period size: 33 Copynumber: 3.8 Consensus size: 33
1422139 ACTAAATTCG
* * *
1422149 CGTTACGATTTTCATTTCGCTTTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
*
1422182 CGTTGCGATTTTCATTTCGCATTACGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
*
1422215 CGTTGTGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1422248 CGTTGCGATTTTCATTTCGCATTGC
1 CGTTGCGATTTTCATTTCGCATTGC
1422273 AATAGTCATT
Statistics
Matches: 84, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 84 1.00
ACGTcount: A:0.13, C:0.24, G:0.17, T:0.46
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
Found at i:1422297 original size:20 final size:20
Alignment explanation
Indices: 1422248--1422341 Score: 59
Period size: 20 Copynumber: 4.7 Consensus size: 20
1422238 GCGATTCTCT
**
1422248 CGTTGCGATTTTCATTT-CG
1 CGTTGCGATAGTCATTTCCG
* *
1422267 CATTGCAATAGTCATTTCCG
1 CGTTGCGATAGTCATTTCCG
* **
1422287 CGTTGCGATAGACA-TTAAG
1 CGTTGCGATAGTCATTTCCG
*
1422306 ATGATTGCGA-ACGTCATTTCCG
1 -CG-TTGCGATA-GTCATTTCCG
*
1422328 TGTTGCGATAGTCA
1 CGTTGCGATAGTCA
1422342 AATGAATGCC
Statistics
Matches: 56, Mismatches: 13, Indels: 11
0.70 0.16 0.14
Matches are distributed among these distances:
19 16 0.29
20 25 0.45
21 12 0.21
22 3 0.05
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.35
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTCCG
Found at i:1422548 original size:12 final size:12
Alignment explanation
Indices: 1422533--1422563 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
1422523 ATTTTAAAGA
*
1422533 TGATTGTGATTT
1 TGATTGCGATTT
1422545 TGATTGCGATTT
1 TGATTGCGATTT
1422557 TGATTGC
1 TGATTGC
1422564 CTTTTGCTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.16, C:0.06, G:0.26, T:0.52
Consensus pattern (12 bp):
TGATTGCGATTT
Found at i:1424876 original size:24 final size:24
Alignment explanation
Indices: 1424809--1424868 Score: 84
Period size: 24 Copynumber: 2.5 Consensus size: 24
1424799 CTGAAAAATC
1424809 ATCAAAATTCGAGTATTGACCAAG
1 ATCAAAATTCGAGTATTGACCAAG
* * *
1424833 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATTCGAGTATTGACCAAG
*
1424857 ATCAAATTTCGA
1 ATCAAAATTCGA
1424869 ATACTGACTA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.25
Consensus pattern (24 bp):
ATCAAAATTCGAGTATTGACCAAG
Found at i:1425766 original size:20 final size:19
Alignment explanation
Indices: 1425704--1425767 Score: 51
Period size: 20 Copynumber: 3.3 Consensus size: 19
1425694 AAATTCAGTA
* *
1425704 TTGCAATAGTCAGAATCTCG
1 TTGCGATAGT-AGAATCGCG
*
1425724 TTGCG-TACGTA-AATCGCA
1 TTGCGATA-GTAGAATCGCG
*
1425742 ATGCGATAGTAAGAATCGCG
1 TTGCGATAGT-AGAATCGCG
1425762 TTGCGA
1 TTGCGA
1425768 ATCTGAAAAC
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
18 11 0.32
19 6 0.18
20 17 0.50
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.27
Consensus pattern (19 bp):
TTGCGATAGTAGAATCGCG
Found at i:1433896 original size:21 final size:21
Alignment explanation
Indices: 1433863--1433902 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
1433853 TTATTCCTGA
*
1433863 GATGCAACTAGCTTTTCTTCG
1 GATGCAACCAGCTTTTCTTCG
*
1433884 GATGTAACCAGCTTTTCTT
1 GATGCAACCAGCTTTTCTT
1433903 GTGAAATTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.23, G:0.17, T:0.40
Consensus pattern (21 bp):
GATGCAACCAGCTTTTCTTCG
Found at i:1435196 original size:14 final size:14
Alignment explanation
Indices: 1435179--1435209 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
1435169 AAAAGATATT
1435179 GAATAAAAAGAAAA
1 GAATAAAAAGAAAA
*
1435193 GAATAAAAATAAAA
1 GAATAAAAAGAAAA
1435207 GAA
1 GAA
1435210 AAATAATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.77, C:0.00, G:0.13, T:0.10
Consensus pattern (14 bp):
GAATAAAAAGAAAA
Found at i:1438092 original size:124 final size:124
Alignment explanation
Indices: 1437929--1438309 Score: 548
Period size: 124 Copynumber: 3.1 Consensus size: 124
1437919 TAAGAATGAC
* * *
1437929 AATGTTGATGTTGATATGTCTCCTTCTGTGATAGAGTCAAGCAAAAGGTTGAACAAGTTCTTCTT
1 AATGTTGATGTTGATATATCTCATTCTGTGATAGAGTCAAGCAAAAGGTTGAACAAGTTCTTCTC
* * *
1437994 ATTCTGAACTTCTTCTCCCTCTTTGGATGAGTTCTTTCCATTATGAACTCTCCATTGAA
66 ATTATGAACTTCTTCTCCCTCTTCGGATGAGTTCTTTCCATTATGAACTCTCCATTGGA
*
1438053 AATGTTGATGCTGATATATCTCATTCTGTGATAGAGTCAAGCAAAAGGTTGAACAAGTTCTTCTC
1 AATGTTGATGTTGATATATCTCATTCTGTGATAGAGTCAAGCAAAAGGTTGAACAAGTTCTTCTC
* * * * *
1438118 ATTATGAAATTCTTCTCGCTCATCGGATGAGTTCTTTTCATTATGAACTCTCGATTGGA
66 ATTATGAACTTCTTCTCCCTCTTCGGATGAGTTCTTTCCATTATGAACTCTCCATTGGA
* * * * * * * *
1438177 AATATTAATGTTGATCTATCTCATTCTGCGATAGAGTCGAGAAAAAGATTGAATAAGTTCTTCTC
1 AATGTTGATGTTGATATATCTCATTCTGTGATAGAGTCAAGCAAAAGGTTGAACAAGTTCTTCTC
* *
1438242 ATTATGAACTTCTTCTTCCTCTTCGGATGAGTTC-TTCTCATTATGAACTCTCCACTGGA
66 ATTATGAACTTCTTCTCCCTCTTCGGATGAGTTCTTTC-CATTATGAACTCTCCATTGGA
1438301 AATGTTGAT
1 AATGTTGAT
1438310 CCCTCGAGTG
Statistics
Matches: 226, Mismatches: 30, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
123 2 0.01
124 224 0.99
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.38
Consensus pattern (124 bp):
AATGTTGATGTTGATATATCTCATTCTGTGATAGAGTCAAGCAAAAGGTTGAACAAGTTCTTCTC
ATTATGAACTTCTTCTCCCTCTTCGGATGAGTTCTTTCCATTATGAACTCTCCATTGGA
Found at i:1441908 original size:21 final size:19
Alignment explanation
Indices: 1441878--1441940 Score: 81
Period size: 21 Copynumber: 3.1 Consensus size: 19
1441868 TGATACCCGT
*
1441878 TGAAGAAGTATCGGTACTA
1 TGAAGAAGTATCGATACTA
1441897 TGAAGAACAGTATCGATACATA
1 TGAAG-A-AGTATCGATAC-TA
1441919 TTGAAGAAGTATCGATACTA
1 -TGAAGAAGTATCGATACTA
1441939 TG
1 TG
1441941 CTAGTAGTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
19 7 0.18
20 3 0.08
21 21 0.54
22 3 0.08
23 5 0.13
ACGTcount: A:0.40, C:0.11, G:0.22, T:0.27
Consensus pattern (19 bp):
TGAAGAAGTATCGATACTA
Found at i:1447275 original size:17 final size:18
Alignment explanation
Indices: 1447253--1447286 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
1447243 TTGAAAGGTC
*
1447253 TGGAA-TAAATTATAAGT
1 TGGAATTAAATAATAAGT
1447270 TGGAATTAAATAATAAG
1 TGGAATTAAATAATAAG
1447287 ACAGAATTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.50, C:0.00, G:0.18, T:0.32
Consensus pattern (18 bp):
TGGAATTAAATAATAAGT
Found at i:1452067 original size:75 final size:74
Alignment explanation
Indices: 1451961--1452234 Score: 297
Period size: 73 Copynumber: 3.7 Consensus size: 74
1451951 AAGATACATT
* *
1451961 TTGTTTCAATGGAAAACTGTCTCAAGTGAGACGAAGTTGGTTTTAAGAAAAACTATTTCGAGTGG
1 TTGTTTCAA-GGGAAACTGTCTCAAGTGAGACAAAGTTGGTTTTAAGAAAAACTATTTCGAGT-G
1452026 GATAAAATTTC
64 GATAAAATTTC
* ** * *
1452037 TTGTTTCAAGGGAAACTGTCTCAAGTGAGACAAAGTTTGTTCCAATAAAAGCTATCTT-GAGTGA
1 TTGTTTCAAGGGAAACTGTCTCAAGTGAGACAAAGTTGGTTTTAAGAAAAACTAT-TTCGAGTG-
1452101 GAT-AAATTT-
64 GATAAAATTTC
* * * * * * * *
1452110 TTGTTTCGAGTGAAATTTTCTCAAGCGAGACAAAGTTTGTTTTAAGAAAGACTATCTCGAGT-GA
1 TTGTTTCAAGGGAAACTGTCTCAAGTGAGACAAAGTTGGTTTTAAGAAAAACTATTTCGAGTGGA
*
1452174 GAAAATTTC
66 TAAAATTTC
* * *
1452183 TTGTTTCAAGGGAAACTGCCTCCAA-TGAGACAAAATTGGCTTTAAGAAAAAC
1 TTGTTTCAAGGGAAACTGTCT-CAAGTGAGACAAAGTTGGTTTTAAGAAAAAC
1452235 AATCTTGAGT
Statistics
Matches: 163, Mismatches: 29, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
71 2 0.01
72 7 0.04
73 87 0.53
74 10 0.06
75 46 0.28
76 11 0.07
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.32
Consensus pattern (74 bp):
TTGTTTCAAGGGAAACTGTCTCAAGTGAGACAAAGTTGGTTTTAAGAAAAACTATTTCGAGTGGA
TAAAATTTC
Found at i:1452077 original size:36 final size:37
Alignment explanation
Indices: 1451937--1452216 Score: 139
Period size: 36 Copynumber: 7.6 Consensus size: 37
1451927 GATTTTAAGA
* * *
1451937 AAAAC-ATCTCAAGTAAGATACAT-TTTGTTTCAATGG
1 AAAACTATCTCAAGTGAGACAAATGTTTGTTTCAA-GG
* * * * *
1451973 AAAACTGTCTCAAGTGAGACGAA-GTTGGTTTTAAGA
1 AAAACTATCTCAAGTGAGACAAATGTTTGTTTCAAGG
* * * * *
1452009 AAAACTATTTCGAGTGGGATAAAATTTCTTGTTTCAAGG
1 AAAACTATCTCAAGTGAGA-CAAATGT-TTGTTTCAAGG
* * * *
1452048 GAAACTGTCTCAAGTGAGACAAA-GTTTGTTCCAA-T
1 AAAACTATCTCAAGTGAGACAAATGTTTGTTTCAAGG
** * * *
1452083 AAAAGCTATCTTGAGTGAGATAAATTTTTGTTTCGAGTG
1 AAAA-CTATCTCAAGTGAGACAAATGTTTGTTTCAAG-G
* * * *
1452122 -AAATTTTCTCAAGCGAGACAAA-GTTTGTTTTAA-G
1 AAAACTATCTCAAGTGAGACAAATGTTTGTTTCAAGG
* *
1452156 AAAGACTATCTCGAGTGAGA-AAATTTCTTGTTTCAAGG
1 AAA-ACTATCTCAAGTGAGACAAATGT-TTGTTTCAAGG
* **
1452194 GAAACTGCCTCCAA-TGAGACAAA
1 AAAACTATCT-CAAGTGAGACAAA
1452217 ATTGGCTTTA
Statistics
Matches: 173, Mismatches: 55, Indels: 30
0.67 0.21 0.12
Matches are distributed among these distances:
34 1 0.01
35 8 0.05
36 65 0.38
37 62 0.36
38 15 0.09
39 22 0.13
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.31
Consensus pattern (37 bp):
AAAACTATCTCAAGTGAGACAAATGTTTGTTTCAAGG
Found at i:1453559 original size:18 final size:20
Alignment explanation
Indices: 1453516--1453569 Score: 76
Period size: 18 Copynumber: 2.8 Consensus size: 20
1453506 TTTTTCTTTG
**
1453516 TTTTTCTTTCCTTTTTGCTA
1 TTTTTCTTTGATTTTTGCTA
1453536 TTTTTCTTTGATTTTT-CT-
1 TTTTTCTTTGATTTTTGCTA
1453554 TTTTTCTTTGATTTTT
1 TTTTTCTTTGATTTTT
1453570 TTTCTTTGCT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
18 16 0.50
19 2 0.06
20 14 0.44
ACGTcount: A:0.06, C:0.13, G:0.06, T:0.76
Consensus pattern (20 bp):
TTTTTCTTTGATTTTTGCTA
Found at i:1453570 original size:30 final size:29
Alignment explanation
Indices: 1453505--1453570 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 29
1453495 TTCTTGTCAT
*
1453505 TTTTTTCTTTGTTTTTCTTTCCTTTTTGC
1 TTTTTTCTTTGTTTTTCTTTCCTTTTTGA
*
1453534 TATTTTTCTTTGATTTTTCTTT-TTTCTTTGA
1 T-TTTTTCTTTG-TTTTTCTTTCCTT-TTTGA
1453565 TTTTTT
1 TTTTTT
1453571 TTCTTTGCTC
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
29 1 0.03
30 17 0.53
31 14 0.44
ACGTcount: A:0.05, C:0.12, G:0.06, T:0.77
Consensus pattern (29 bp):
TTTTTTCTTTGTTTTTCTTTCCTTTTTGA
Found at i:1453584 original size:15 final size:14
Alignment explanation
Indices: 1453553--1453591 Score: 60
Period size: 14 Copynumber: 2.7 Consensus size: 14
1453543 TTGATTTTTC
1453553 TTTTTTCTTTGATT
1 TTTTTTCTTTGATT
*
1453567 TTTTTTCTTTGCTCT
1 TTTTTTCTTTGAT-T
1453582 TTTTTTCTTT
1 TTTTTTCTTT
1453592 ACTTTTATCC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.03, C:0.13, G:0.05, T:0.79
Consensus pattern (14 bp):
TTTTTTCTTTGATT
Found at i:1454825 original size:20 final size:19
Alignment explanation
Indices: 1454800--1454838 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
1454790 TGCAATGTGT
*
1454800 ATATGCTAATACAAAGATGC
1 ATATGCAAATACAAA-ATGC
*
1454820 ATATGCAAATGCAAAATGC
1 ATATGCAAATACAAAATGC
1454839 GAGAAACAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.46, C:0.15, G:0.15, T:0.23
Consensus pattern (19 bp):
ATATGCAAATACAAAATGC
Found at i:1466930 original size:19 final size:17
Alignment explanation
Indices: 1466902--1466943 Score: 59
Period size: 19 Copynumber: 2.4 Consensus size: 17
1466892 TAATTATTTA
1466902 ATAA-ATAATATATATAT
1 ATAATATAATATAT-TAT
1466919 ATATATATAATATATTAT
1 ATA-ATATAATATATTAT
1466937 ATAATAT
1 ATAATAT
1466944 TTAAACCCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 7 0.30
18 7 0.30
19 9 0.39
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
ATAATATAATATATTAT
Found at i:1467924 original size:24 final size:25
Alignment explanation
Indices: 1467877--1467931 Score: 85
Period size: 24 Copynumber: 2.2 Consensus size: 25
1467867 TAACAGGGAG
*
1467877 AAAACAATGATAATTTTCTCTTGATA
1 AAAAGAATGATAA-TTTCTCTTGATA
1467903 AAAAGAATGATAA-TTCTCTTGATA
1 AAAAGAATGATAATTTCTCTTGATA
1467927 AAAAG
1 AAAAG
1467932 GAGAAAACAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 16 0.57
26 12 0.43
ACGTcount: A:0.47, C:0.09, G:0.11, T:0.33
Consensus pattern (25 bp):
AAAAGAATGATAATTTCTCTTGATA
Found at i:1468159 original size:23 final size:23
Alignment explanation
Indices: 1468106--1468160 Score: 83
Period size: 23 Copynumber: 2.4 Consensus size: 23
1468096 CCATGTCACT
1468106 TTTCAACCATTATTGGTGCCAAC
1 TTTCAACCATTATTGGTGCCAAC
* * *
1468129 TATGAACCATTATTGTTGCCAAC
1 TTTCAACCATTATTGGTGCCAAC
1468152 TTTCAACCA
1 TTTCAACCA
1468161 CCTAAAGATT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.29, C:0.25, G:0.11, T:0.35
Consensus pattern (23 bp):
TTTCAACCATTATTGGTGCCAAC
Found at i:1477481 original size:23 final size:23
Alignment explanation
Indices: 1477455--1477509 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 23
1477445 AAACTTTAGG
1477455 TGGTTGAAAGTTGGA-AACAATAA
1 TGGTTGAAA-TTGGACAACAATAA
* * * *
1477478 TGGTTCATATTTGACACCAATAA
1 TGGTTGAAATTGGACAACAATAA
1477501 TGGTTGAAA
1 TGGTTGAAA
1477510 AGTGACATGG
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
22 4 0.16
23 21 0.84
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.31
Consensus pattern (23 bp):
TGGTTGAAATTGGACAACAATAA
Found at i:1479180 original size:57 final size:57
Alignment explanation
Indices: 1479092--1479212 Score: 224
Period size: 57 Copynumber: 2.1 Consensus size: 57
1479082 TTCTACTTCA
1479092 AAGTCTACCTGATTCGTATGATCAAATCATCATCAACTTGACAAACAGTAATGTCAC
1 AAGTCTACCTGATTCGTATGATCAAATCATCATCAACTTGACAAACAGTAATGTCAC
*
1479149 AAGTCTACCTGATTCGTATGATCAAATCATCATCAACTTGACAAATAGTAATGTCAC
1 AAGTCTACCTGATTCGTATGATCAAATCATCATCAACTTGACAAACAGTAATGTCAC
*
1479206 TAGTCTA
1 AAGTCTA
1479213 GTCTTCGATG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 62 1.00
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.30
Consensus pattern (57 bp):
AAGTCTACCTGATTCGTATGATCAAATCATCATCAACTTGACAAACAGTAATGTCAC
Found at i:1483495 original size:18 final size:19
Alignment explanation
Indices: 1483468--1483503 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
1483458 CATCACTGTG
1483468 GATAATAGGAAAACTGCCC
1 GATAATAGGAAAACTGCCC
*
1483487 GATAA-AGGAAAAGTGCC
1 GATAATAGGAAAACTGCC
1483504 ATTAGGACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.44, C:0.17, G:0.25, T:0.14
Consensus pattern (19 bp):
GATAATAGGAAAACTGCCC
Found at i:1491293 original size:16 final size:16
Alignment explanation
Indices: 1491269--1491454 Score: 273
Period size: 16 Copynumber: 11.6 Consensus size: 16
1491259 ACCAAAGATG
1491269 TCAACTTTGCCAACTT
1 TCAACTTTGCCAACTT
* *
1491285 TCAATTTTGCTAACTT
1 TCAACTTTGCCAACTT
1491301 TCAACTTTGCCAACTT
1 TCAACTTTGCCAACTT
* *
1491317 TCAATTTTGCTAACTT
1 TCAACTTTGCCAACTT
1491333 TCAACTTTGCCAACTT
1 TCAACTTTGCCAACTT
* *
1491349 TCAATTTTGCTAACTT
1 TCAACTTTGCCAACTT
1491365 TCAACTTTGCCAACTT
1 TCAACTTTGCCAACTT
*
1491381 TCAATTTTGCCAACTT
1 TCAACTTTGCCAACTT
* *
1491397 TCAATTTTGCTAACTT
1 TCAACTTTGCCAACTT
*
1491413 TCAACTTTGTCAACTT
1 TCAACTTTGCCAACTT
*
1491429 TCAATTTTGCCAACTT
1 TCAACTTTGCCAACTT
1491445 TCAACTTTGC
1 TCAACTTTGC
1491455 TAATATTTCA
Statistics
Matches: 150, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 150 1.00
ACGTcount: A:0.25, C:0.25, G:0.06, T:0.44
Consensus pattern (16 bp):
TCAACTTTGCCAACTT
Found at i:1491310 original size:32 final size:32
Alignment explanation
Indices: 1491269--1491457 Score: 308
Period size: 32 Copynumber: 5.9 Consensus size: 32
1491259 ACCAAAGATG
1491269 TCAACTTTGCCAACTTTCAATTTTGCTAACTT
1 TCAACTTTGCCAACTTTCAATTTTGCTAACTT
1491301 TCAACTTTGCCAACTTTCAATTTTGCTAACTT
1 TCAACTTTGCCAACTTTCAATTTTGCTAACTT
1491333 TCAACTTTGCCAACTTTCAATTTTGCTAACTT
1 TCAACTTTGCCAACTTTCAATTTTGCTAACTT
*
1491365 TCAACTTTGCCAACTTTCAATTTTGCCAACTT
1 TCAACTTTGCCAACTTTCAATTTTGCTAACTT
* * *
1491397 TCAATTTTGCTAACTTTCAACTTTG-TCAACTT
1 TCAACTTTGCCAACTTTCAATTTTGCT-AACTT
* *
1491429 TCAATTTTGCCAACTTTCAACTTTGCTAA
1 TCAACTTTGCCAACTTTCAATTTTGCTAA
1491458 TATTTCAAGC
Statistics
Matches: 149, Mismatches: 6, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
32 148 0.99
33 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.06, T:0.43
Consensus pattern (32 bp):
TCAACTTTGCCAACTTTCAATTTTGCTAACTT
Found at i:1491455 original size:48 final size:48
Alignment explanation
Indices: 1491269--1491457 Score: 306
Period size: 48 Copynumber: 3.9 Consensus size: 48
1491259 ACCAAAGATG
* *
1491269 TCAACTTTGCCAACTTTCAATTTTGCTAACTTTCAACTTTGCCAACTT
1 TCAACTTTGCCAACTTTCAATTTTGCCAACTTTCAACTTTGCTAACTT
* * * *
1491317 TCAATTTTGCTAACTTTCAACTTTGCCAACTTTCAATTTTGCTAACTT
1 TCAACTTTGCCAACTTTCAATTTTGCCAACTTTCAACTTTGCTAACTT
*
1491365 TCAACTTTGCCAACTTTCAATTTTGCCAACTTTCAATTTTGCTAACTT
1 TCAACTTTGCCAACTTTCAATTTTGCCAACTTTCAACTTTGCTAACTT
*
1491413 TCAACTTTGTCAACTTTCAATTTTGCCAACTTTCAACTTTGCTAA
1 TCAACTTTGCCAACTTTCAATTTTGCCAACTTTCAACTTTGCTAA
1491458 TATTTCAAGC
Statistics
Matches: 130, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 130 1.00
ACGTcount: A:0.25, C:0.25, G:0.06, T:0.43
Consensus pattern (48 bp):
TCAACTTTGCCAACTTTCAATTTTGCCAACTTTCAACTTTGCTAACTT
Found at i:1493081 original size:24 final size:24
Alignment explanation
Indices: 1493045--1493153 Score: 59
Period size: 24 Copynumber: 4.6 Consensus size: 24
1493035 AAATCATAAT
* *
1493045 TAAAACACTTAAAACTATTTAAAC
1 TAAAATACCTAAAACTATTTAAAC
* *
1493069 TAAAATACCTAAAAATAATATTTAAAA
1 TAAAATACCT--AAA-ACTATTTAAAC
* * **
1493096 TAATAT-TCT-AAA-T-CCTAAA-
1 TAAAATACCTAAAACTATTTAAAC
*
1493115 TAAAATA-CTACAACCTATTTAAAC
1 TAAAATACCTA-AAACTATTTAAAC
1493139 TAAAATACCTAAAAC
1 TAAAATACCTAAAAC
1493154 AAAGATAAAA
Statistics
Matches: 62, Mismatches: 13, Indels: 20
0.65 0.14 0.21
Matches are distributed among these distances:
19 7 0.11
20 4 0.06
21 3 0.05
22 2 0.03
23 6 0.10
24 18 0.29
25 3 0.05
26 5 0.08
27 14 0.23
ACGTcount: A:0.55, C:0.16, G:0.00, T:0.29
Consensus pattern (24 bp):
TAAAATACCTAAAACTATTTAAAC
Found at i:1493119 original size:70 final size:73
Alignment explanation
Indices: 1493034--1493221 Score: 222
Period size: 76 Copynumber: 2.6 Consensus size: 73
1493024 TAAAGCATCT
* * *
1493034 TAAATCATAATTAAAACACTTAAAACTATTTAAACTAAAATACCT-A-AAA-ATAATAT-TTAAA
1 TAAATCATAATTAAAATAC-TAAAACTATTTAAACTAAAATACCTAACAAAGATAAAATATAAAA
*
1493095 ATAATATTC
65 ATAATATCC
* * *
1493104 TAAATCCTAAATAAAATACTACAACCTATTTAAACTAAAATACCTAAAACAAAGATAAAATATAA
1 TAAATCATAATTAAAATACTA-AAACTATTTAAACTAAAATACCT--AACAAAGATAAAATATAA
1493169 AAATAATATCC
63 AAATAATATCC
* *
1493180 TAAAACTTAATTAAAATACTAAAACCTATTTAAACTAAAATA
1 TAAATCATAATTAAAATACTAAAA-CTATTTAAACTAAAATA
1493222 AAAAATAAAA
Statistics
Matches: 99, Mismatches: 11, Indels: 10
0.82 0.09 0.08
Matches are distributed among these distances:
69 2 0.02
70 38 0.38
73 1 0.01
74 3 0.03
75 8 0.08
76 47 0.47
ACGTcount: A:0.57, C:0.13, G:0.01, T:0.29
Consensus pattern (73 bp):
TAAATCATAATTAAAATACTAAAACTATTTAAACTAAAATACCTAACAAAGATAAAATATAAAAA
TAATATCC
Found at i:1500413 original size:18 final size:18
Alignment explanation
Indices: 1500392--1500430 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
1500382 TTTTTAAAAC
*
1500392 AAAAGATAAGAATTAAAT
1 AAAAGAAAAGAATTAAAT
*
1500410 AAAAGAAAATAATTAAAT
1 AAAAGAAAAGAATTAAAT
1500428 AAA
1 AAA
1500431 CAAATTAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.72, C:0.00, G:0.08, T:0.21
Consensus pattern (18 bp):
AAAAGAAAAGAATTAAAT
Found at i:1501099 original size:70 final size:74
Alignment explanation
Indices: 1501022--1501210 Score: 253
Period size: 76 Copynumber: 2.6 Consensus size: 74
1501012 TAAAACATCT
* * * *
1501022 TAAATCCTAATTAAAACACTTATAA-CTATTTAAACTAAAATACCT-A-AAA-ATAATAT-TTAA
1 TAAATCCTAATTAAAATAC-TAAAACCTATTTAAACTAAAATACCTAACAAAGATAAAATATAAA
*
1501082 AATAATATTC
65 AATAATATCC
1501092 TAAATCCTAATTAAAATACTAAAACCTATTTAAACTAAAATACCTAAAACAAAGATAAAATATAA
1 TAAATCCTAATTAAAATACTAAAACCTATTTAAACTAAAATACCT--AACAAAGATAAAATATAA
1501157 AAATAATATCC
64 AAATAATATCC
* *
1501168 TAAAACTTAATTAAAATACTAAAACCTATTTAAACTAAAATAC
1 TAAATCCTAATTAAAATACTAAAACCTATTTAAACTAAAATAC
1501211 AAAGATAAAA
Statistics
Matches: 105, Mismatches: 7, Indels: 8
0.88 0.06 0.07
Matches are distributed among these distances:
69 4 0.04
70 38 0.36
73 1 0.01
74 3 0.03
75 6 0.06
76 53 0.50
ACGTcount: A:0.56, C:0.14, G:0.01, T:0.30
Consensus pattern (74 bp):
TAAATCCTAATTAAAATACTAAAACCTATTTAAACTAAAATACCTAACAAAGATAAAATATAAAA
ATAATATCC
Found at i:1504868 original size:176 final size:173
Alignment explanation
Indices: 1504645--1505067 Score: 460
Period size: 175 Copynumber: 2.4 Consensus size: 173
1504635 AAAAAATTTA
* * * * ** *
1504645 TCACAACAAATAATGAGATT-TAGATTTATTGTGACAAATTTTGTTTGTAATTATATATTTTAAT
1 TCACAAAAAATAATGAGATTCAAG-TTT-TTGTAAAAAATAATGTTTGTAGTTATATATTTTAAT
* *
1504709 TATAGTGACAAAATGTATAGTCACAAATGAA-TATCTCCA-A-TTTTTGGTAAAAAAATCATATA
64 TATAGTGACAAAATATATAGTCACAAA-GAATTATCTCCATATTTTTTGGCAAAAAAATCATATA
** * *
1504771 GTGACATGTTTTGTAACTATAAACT-ATAATTATTGTTACAAAAAAATTG
128 GTGACAAATTTTGTAACTAT-AACTGATAATGATTATT--AAAAAAA-TG
* * * *
1504820 TTACAACAAATAATGAGATTCAAGTTTTTAGTAAAAAAATAATGTTTGTCGTTATATGTTTTAAT
1 TCACAAAAAATAATGAGATTCAAGTTTTT-GT-AAAAAATAATGTTTGTAGTTATATATTTTAAT
* * *
1504885 TATAGTGACAAAATATATTGTCACAAAGAATTCTCTCCATATTTTTTTTGGCAAAAAAGTCATAT
64 TATAGTGACAAAATATATAGTCACAAAGAATTATCTCCATA--TTTTTTGGCAAAAAAATCATAT
* *
1504950 AGTGACAAATTTTGTAACTATAAGTGTTAATGATTATTAAAAAAATG
127 AGTGACAAATTTTGTAACTATAACTGATAATGATTATTAAAAAAATG
* * * * * *
1504997 TCACAAAAAATAATGATATTCACGTTTTTGTAACAAATTATATTTGTAGTTATAAATTTTAATTA
1 TCACAAAAAATAATGAGATTCAAGTTTTTGTAAAAAATAATGTTTGTAGTTATATATTTTAATTA
1505062 TAGTGA
66 TAGTGA
1505068 TAGCATATAT
Statistics
Matches: 209, Mismatches: 30, Indels: 18
0.81 0.12 0.07
Matches are distributed among these distances:
174 2 0.01
175 61 0.29
176 61 0.29
177 28 0.13
178 7 0.03
179 3 0.01
180 47 0.22
ACGTcount: A:0.41, C:0.08, G:0.12, T:0.39
Consensus pattern (173 bp):
TCACAAAAAATAATGAGATTCAAGTTTTTGTAAAAAATAATGTTTGTAGTTATATATTTTAATTA
TAGTGACAAAATATATAGTCACAAAGAATTATCTCCATATTTTTTGGCAAAAAAATCATATAGTG
ACAAATTTTGTAACTATAACTGATAATGATTATTAAAAAAATG
Found at i:1506359 original size:32 final size:32
Alignment explanation
Indices: 1506318--1506379 Score: 124
Period size: 32 Copynumber: 1.9 Consensus size: 32
1506308 CAGTGTCAAG
1506318 GACAGGTATTATAAAAAGCTGTCACATAATTA
1 GACAGGTATTATAAAAAGCTGTCACATAATTA
1506350 GACAGGTATTATAAAAAGCTGTCACATAAT
1 GACAGGTATTATAAAAAGCTGTCACATAAT
1506380 CAGGGTCGGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.44, C:0.13, G:0.16, T:0.27
Consensus pattern (32 bp):
GACAGGTATTATAAAAAGCTGTCACATAATTA
Found at i:1511794 original size:34 final size:34
Alignment explanation
Indices: 1511735--1511801 Score: 84
Period size: 34 Copynumber: 1.9 Consensus size: 34
1511725 TTCTTGAGAG
*
1511735 TTGTTTTCTCCTTTTTATCAAGAGAGAA-TTGTTA
1 TTGTTTTCTCCTTTTGATC-AGAGAGAAGTTGTTA
1511769 TTGTTTTCTCCTTGTTAGATC-GAGAGAAGTTGT
1 TTGTTTTCTCCTT-TT-GATCAGAGAGAAGTTGT
1511802 AATTCTTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
34 20 0.69
35 6 0.21
36 3 0.10
ACGTcount: A:0.21, C:0.12, G:0.19, T:0.48
Consensus pattern (34 bp):
TTGTTTTCTCCTTTTGATCAGAGAGAAGTTGTTA
Found at i:1514024 original size:34 final size:34
Alignment explanation
Indices: 1513965--1514031 Score: 84
Period size: 34 Copynumber: 1.9 Consensus size: 34
1513955 TTCTTGAGAG
*
1513965 TTGTTTTCTTCTTTTTATCAAGAGAGAA-TTGTTA
1 TTGTTTTCTTCTTTTGATC-AGAGAGAAGTTGTTA
1513999 TTGTTTTCTTCTTGTTAGATC-GAGAGAAGTTGT
1 TTGTTTTCTTCTT-TT-GATCAGAGAGAAGTTGT
1514032 AATTCCTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
34 20 0.69
35 6 0.21
36 3 0.10
ACGTcount: A:0.21, C:0.09, G:0.19, T:0.51
Consensus pattern (34 bp):
TTGTTTTCTTCTTTTGATCAGAGAGAAGTTGTTA
Found at i:1516476 original size:42 final size:41
Alignment explanation
Indices: 1516376--1516481 Score: 122
Period size: 42 Copynumber: 2.6 Consensus size: 41
1516366 GCCCGAAGGT
* * *
1516376 CTTACAGATGGCCCGAAGGACTTATCATCTTACTTGAAATA
1 CTTACAGATGGCCCGAAGGACTTATCATCATACTCGAAAGA
* * * *
1516417 CTGACAGATGACCCGAAGGATTTAATCATCATGCTCGAAAGA
1 CTTACAGATGGCCCGAAGGACTT-ATCATCATACTCGAAAGA
* *
1516459 CTTACTGATGGCTCGAAGGACTT
1 CTTACAGATGGCCCGAAGGACTT
1516482 GTTAATTTTG
Statistics
Matches: 52, Mismatches: 12, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
41 20 0.38
42 32 0.62
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (41 bp):
CTTACAGATGGCCCGAAGGACTTATCATCATACTCGAAAGA
Found at i:1516711 original size:42 final size:41
Alignment explanation
Indices: 1516639--1516740 Score: 109
Period size: 42 Copynumber: 2.5 Consensus size: 41
1516629 AAGGTCTTAT
*
1516639 AGATGGCCCGAAGGACTTATCATATTGCTCGAAAGACTGAC
1 AGATGACCCGAAGGACTTATCATATTGCTCGAAAGACTGAC
* * *
1516680 AGATGACCCGAATGATTTGATCATCA-TGCTCGAAAGACTTAC
1 AGATGACCCGAAGGACTT-ATCAT-ATTGCTCGAAAGACTGAC
* *
1516722 TGATCG-CTCGAAGGACTTA
1 AGAT-GACCCGAAGGACTTA
1516741 CCAATTTTGG
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
41 16 0.32
42 32 0.64
43 2 0.04
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.25
Consensus pattern (41 bp):
AGATGACCCGAAGGACTTATCATATTGCTCGAAAGACTGAC
Found at i:1516749 original size:258 final size:257
Alignment explanation
Indices: 1516176--1517642 Score: 2075
Period size: 258 Copynumber: 5.7 Consensus size: 257
1516166 GTAACCAAAT
* * *
1516176 GATTGAATCATCATGCTCGAAAGACTTACTGATGGCCTGAAGGACATACTAATTTTTGAAATAGT
1 GATTTAATCATCATGCTCGAAAGACTTACTGATGGCC-GAAGGACTTACTAATTTTGGAAATAGT
* * * * * *
1516241 TTATTGGGTAAGAAACTTTGGAAATCGTTTTCTTACTTTTCAAAGATTTCATCTTCTGAAAATAT
65 TTACTAGGTAAGAAACTTTGGAAATCGCTTTCTTACTTTTCAAAAATTTCATTTTCTGAAAACAT
**
1516306 TAAATGAGAAACTTTGAAAATCGCTTTCTCATTTTTTTGAAAATCATGTGAAAACATCCTGCCCG
130 TAAATGAGAAACTTTGAAAATCGCTTTCTCA-TTTTTCAAAAATCATGTGAAAACATCCTGCCCG
* * * * *
1516371 AAGGTCTTACAGATGGCCCGAAGGACTTATCATCTTACTTGAAATACTGACAGATGACCCGAAG
194 AAGGTCTTATAGATGGCCCGAAGGACTTAACATCTTGCTCGAAAGACTGACAGATGACCCGAAG
**
1516435 GATTTAATCATCATGCTCGAAAGACTTACTGATGGCTCGAAGGACTTGTTAATTTTGGAAATAGT
1 GATTTAATCATCATGCTCGAAAGACTTACTGATGGC-CGAAGGACTTACTAATTTTGGAAATAGT
* * * * * *
1516500 TTATTGGGTAAGAAACTTTGGAAATCGTTTTCTTACTTTTCAAAGATTTCATCTTCTGAAAATAT
65 TTACTAGGTAAGAAACTTTGGAAATCGCTTTCTTACTTTTCAAAAATTTCATTTTCTGAAAACAT
* ** * *
1516565 TAAATGAGAAACTTTGGAAATCGCTTTCTCATTTTTCGGAAATAATGTGAAAACATCATGCCCGA
130 TAAATGAGAAACTTTGAAAATCGCTTTCTCATTTTTCAAAAATCATGTGAAAACATCCTGCCCGA
* * *
1516630 AGGTCTTATAGATGGCCCGAAGGACTTATCATATTGCTCGAAAGACTGACAGATGACCCGAAT
195 AGGTCTTATAGATGGCCCGAAGGACTTAACATCTTGCTCGAAAGACTGACAGATGACCCGAAG
* * *
1516693 GATTTGATCATCATGCTCGAAAGACTTACTGATCGCTCGAAGGACTTACCAATTTTGGAAATAGT
1 GATTTAATCATCATGCTCGAAAGACTTACTGATGGC-CGAAGGACTTACTAATTTTGGAAATAGT
* *
1516758 TTACTAGGTAATAAACTTTGGAAATCGCTTTCTTACTTTTCAAAAATTTCATTTTCTAAAAACAT
65 TTACTAGGTAAGAAACTTTGGAAATCGCTTTCTTACTTTTCAAAAATTTCATTTTCTGAAAACAT
* * *
1516823 TAAATG-GAAAACTTTGAAAATTGCTTTTCTTATTTTTCAAAAATCACGTGAAAACATCCTGCCT
130 TAAATGAG-AAACTTTGAAAATCGC-TTTCTCATTTTTCAAAAATCATGTGAAAACATCCTGCC-
* *
1516887 C-AAGGTCTTATAGATGGCCCGAAGAACTTAAAATCTTGCTCGAAAGA-TAGACAGATGACCCGA
192 CGAAGGTCTTATAGATGGCCCGAAGGACTTAACATCTTGCTCGAAAGACT-GACAGATGACCCGA
1516950 AG
256 AG
* * *
1516952 GATTTAATCATCATGCTCGAAAGACTTATTGATAGCCTGAAGGACTTACTAATTTTGAAAATAGT
1 GATTTAATCATCATGCTCGAAAGACTTACTGATGGCC-GAAGGACTTACTAATTTTGGAAATAGT
1517017 TTACTAGGTACA-AAACTTTGGAAATCGCTTTCTTACTTTTCAAAAATTTCATTTTCCTG-AAAC
65 TTACTAGGTA-AGAAACTTTGGAAATCGCTTTCTTACTTTTCAAAAATTTCATTTT-CTGAAAAC
* * **
1517080 ATTAAATTACAAACTTTGAAAATCGCTTTCTCATTTTTCAAAAATCATGTGAAAACATTATGCCC
128 ATTAAATGAGAAACTTTGAAAATCGCTTTCTCATTTTTCAAAAATCATGTGAAAACATCCTGCCC
* * * * *
1517145 GAAGGTCTTATAGATGGCTCGAAGGACTTAACAACTTGCTCAAAAGACTGAAAGATGACCTGAAG
193 GAAGGTCTTATAGATGGCCCGAAGGACTTAACATCTTGCTCGAAAGACTGACAGATGACCCGAAG
* * *
1517210 GATTTAATCATCATGCTCGAAAGAGTTATTGATGGCCCGAAGGACTTATTAATTTTGGAAATAGT
1 GATTTAATCATCATGCTCGAAAGACTTACTGATGG-CCGAAGGACTTACTAATTTTGGAAATAGT
*
1517275 TTACTAGGTAAGAAACTTTGGAAATCGCTTTCTTACTTTTCAAAAATTTTATTTTCTGAAAAACA
65 TTACTAGGTAAGAAACTTTGGAAATCGCTTTCTTACTTTTCAAAAATTTCATTTTCTG-AAAACA
*
1517340 TTAAATGAGAAACTTTGAAAATCGTTTTCTCATTTTTCAAAAATCATGTGAAAACATCCTGCCCG
129 TTAAATGAGAAACTTTGAAAATCGCTTTCTCATTTTTCAAAAATCATGTGAAAACATCCTGCCCG
*
1517405 AAGGTCTTATAGATGGCCCGAATGACTTAACATCTTGCTCGAAAGACTGACAGATGACCCG-AG
194 AAGGTCTTATAGATGGCCCGAAGGACTTAACATCTTGCTCGAAAGACTGACAGATGACCCGAAG
* * * *
1517468 AATTTAATCATCATGCTCGAAAGACTTACTAATGGCCCAAAGGACTTACAAATTTTGGAAATAGT
1 GATTTAATCATCATGCTCGAAAGACTTACTGATGG-CCGAAGGACTTACTAATTTTGGAAATAGT
* * * * *
1517533 TTACTAGGTAAGAAACTTTAGAAATCACTTTCTTACTTTTCAAAATTTTCATTTTTTTAAAAAAT
65 TTACTAGGTAAGAAACTTTGGAAATCGCTTTCTTACTTTTCAAAAATTTCA-TTTTCT--GAAA-
* *
1517598 ATATTAAATGAGAAACTTT-AGAAATCACTTTCTCATTTTTCAAAA
126 ACATTAAATGAGAAACTTTGA-AAATCGCTTTCTCATTTTTCAAAA
1517643 CAACTTAATG
Statistics
Matches: 1094, Mismatches: 94, Indels: 38
0.89 0.08 0.03
Matches are distributed among these distances:
257 6 0.01
258 532 0.49
259 507 0.46
260 9 0.01
261 40 0.04
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Consensus pattern (257 bp):
GATTTAATCATCATGCTCGAAAGACTTACTGATGGCCGAAGGACTTACTAATTTTGGAAATAGTT
TACTAGGTAAGAAACTTTGGAAATCGCTTTCTTACTTTTCAAAAATTTCATTTTCTGAAAACATT
AAATGAGAAACTTTGAAAATCGCTTTCTCATTTTTCAAAAATCATGTGAAAACATCCTGCCCGAA
GGTCTTATAGATGGCCCGAAGGACTTAACATCTTGCTCGAAAGACTGACAGATGACCCGAAG
Found at i:1517146 original size:517 final size:514
Alignment explanation
Indices: 1516173--1517642 Score: 2064
Period size: 517 Copynumber: 2.8 Consensus size: 514
1516163 TCTGTAACCA
* *
1516173 AATGA-TTGAATCATCATGCTCGAAAGACTTACTGATGGCCTGAAGGACATACTAATTTTTGAAA
1 AATGATTTG-ATCATCATGCTCGAAAGACTTACTGATGGCC-GAAGGACTTACTAATTTTGGAAA
* * * * * *
1516237 TAGTTTATTGGGTAAGAAACTTTGGAAATCGTTTTCTTACTTTTCAAAGATTTCATCTTCTGAAA
64 TAGTTTACTAGGTAAGAAACTTTGGAAATCGCTTTCTTACTTTTCAAAAATTTCATTTTCTAAAA
* *
1516302 ATATTAAATGAGAAACTTTGAAAATCGCTTTCTCATT-TTTTT-GAAAATCATGTGAAAACATCC
129 ACATTAAATGAGAAACTTTGAAAATCGCTTT-TC-TTATTTTTCAAAAATCATGTGAAAACATCC
* * * * *
1516365 TGCCCGAAGGTCTTACAGATGGCCCGAAGGACTTATCATCTTACTTGAAATACTGACAGATGACC
192 TGCCCGAAGGTCTTATAGATGGCCCGAA-GACTTAACATCTTGCTCGAAAGACTGACAGATGACC
* **
1516430 CGAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCTCGAAGGACTTGTTAATTTTGGAA
256 CGAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGCCT-GAAGGACTTACTAATTTTGGAA
* * * * *
1516495 ATAGTTTATTGGGTAAGAAACTTTGGAAATCGTTTTCTTACTTTTCAAAGATTTCATCTTCTGAA
320 ATAGTTTACTAGGTAAGAAACTTTGGAAATCGCTTTCTTACTTTTCAAAAATTTCATTTTCTGAA
* * * **
1516560 AATATTAAATGAGAAACTTTGGAAATCGCTTTCTCATTTTTCGGAAATAATGTGAAAACATCATG
385 AACATTAAATGACAAACTTTGAAAATCGCTTTCTCATTTTTCAAAAATAATGTGAAAACATCATG
* * *
1516625 CCCGAAGGTCTTATAGATGGCCCGAAGGACTTATCATA-TTGCTCGAAAGACTGACAGATGACCC
450 CCCGAAGGTCTTATAGATGGCCCGAAGGACTTAACA-ACTTGCTCAAAAGACTGAAAGATGACCC
1516689 G
514 G
* *
1516690 AATGATTTGATCATCATGCTCGAAAGACTTACTGATCGCTCGAAGGACTTACCAATTTTGGAAAT
1 AATGATTTGATCATCATGCTCGAAAGACTTACTGATGGC-CGAAGGACTTACTAATTTTGGAAAT
*
1516755 AGTTTACTAGGTAATAAACTTTGGAAATCGCTTTCTTACTTTTCAAAAATTTCATTTTCTAAAAA
65 AGTTTACTAGGTAAGAAACTTTGGAAATCGCTTTCTTACTTTTCAAAAATTTCATTTTCTAAAAA
* *
1516820 CATTAAATG-GAAAACTTTGAAAATTGCTTTTCTTATTTTTCAAAAATCACGTGAAAACATCCTG
130 CATTAAATGAG-AAACTTTGAAAATCGCTTTTCTTATTTTTCAAAAATCATGTGAAAACATCCTG
*
1516884 CCTC-AAGGTCTTATAGATGGCCCGAAGAACTTAAAATCTTGCTCGAAAGA-TAGACAGATGACC
194 CC-CGAAGGTCTTATAGATGGCCCGAAG-ACTTAACATCTTGCTCGAAAGACT-GACAGATGACC
* *
1516947 CGAAGGATTTAATCATCATGCTCGAAAGACTTATTGATAGCCTGAAGGACTTACTAATTTTGAAA
256 CGAAGGATTTAATCATCATGCTCGAAAGACTTACTGAT-GCCTGAAGGACTTACTAATTTTGGAA
1517012 ATAGTTTACTAGGTACA-AAACTTTGGAAATCGCTTTCTTACTTTTCAAAAATTTCATTTTCCTG
320 ATAGTTTACTAGGTA-AGAAACTTTGGAAATCGCTTTCTTACTTTTCAAAAATTTCATTTT-CTG
* * *
1517076 -AAACATTAAATTACAAACTTTGAAAATCGCTTTCTCATTTTTCAAAAATCATGTGAAAACATTA
383 AAAACATTAAATGACAAACTTTGAAAATCGCTTTCTCATTTTTCAAAAATAATGTGAAAACATCA
*
1517140 TGCCCGAAGGTCTTATAGATGGCTCGAAGGACTTAACAACTTGCTCAAAAGACTGAAAGATGACC
448 TGCCCGAAGGTCTTATAGATGGCCCGAAGGACTTAACAACTTGCTCAAAAGACTGAAAGATGACC
*
1517205 TG
513 CG
* * * * *
1517207 AAGGATTTAATCATCATGCTCGAAAGAGTTATTGATGGCCCGAAGGACTTATTAATTTTGGAAAT
1 AATGATTTGATCATCATGCTCGAAAGACTTACTGATGG-CCGAAGGACTTACTAATTTTGGAAAT
*
1517272 AGTTTACTAGGTAAGAAACTTTGGAAATCGCTTTCTTACTTTTCAAAAATTTTATTTTCTGAAAA
65 AGTTTACTAGGTAAGAAACTTTGGAAATCGCTTTCTTACTTTTCAAAAATTTCATTTTCT-AAAA
*
1517337 ACATTAAATGAGAAACTTTGAAAATCG-TTTTCTCATTTTTCAAAAATCATGTGAAAACATCCTG
129 ACATTAAATGAGAAACTTTGAAAATCGCTTTTCTTATTTTTCAAAAATCATGTGAAAACATCCTG
1517401 CCCGAAGGTCTTATAGATGGCCCGAATGACTTAACATCTTGCTCGAAAGACTGACAGATGACCCG
194 CCCGAAGGTCTTATAGATGGCCCGAA-GACTTAACATCTTGCTCGAAAGACTGACAGATGACCCG
* * ** *
1517466 -AGAATTTAATCATCATGCTCGAAAGACTTACTAATGGCCCAAAGGACTTACAAATTTTGGAAAT
258 AAGGATTTAATCATCATGCTCGAAAGACTTACTGAT-GCCTGAAGGACTTACTAATTTTGGAAAT
* * * * *
1517530 AGTTTACTAGGTAAGAAACTTTAGAAATCACTTTCTTACTTTTCAAAATTTTCATTTTTTTAAAA
322 AGTTTACTAGGTAAGAAACTTTGGAAATCGCTTTCTTACTTTTCAAAAATTTCA-TTTTCT--GA
* * *
1517595 AATATATTAAATGAGAAACTTT-AGAAATCACTTTCTCATTTTTCAAAA
384 AA-ACATTAAATGACAAACTTTGA-AAATCGCTTTCTCATTTTTCAAAA
1517643 CAACTTAATG
Statistics
Matches: 854, Mismatches: 74, Indels: 47
0.88 0.08 0.05
Matches are distributed among these distances:
515 3 0.00
516 118 0.14
517 647 0.76
518 43 0.05
519 4 0.00
520 39 0.05
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Consensus pattern (514 bp):
AATGATTTGATCATCATGCTCGAAAGACTTACTGATGGCCGAAGGACTTACTAATTTTGGAAATA
GTTTACTAGGTAAGAAACTTTGGAAATCGCTTTCTTACTTTTCAAAAATTTCATTTTCTAAAAAC
ATTAAATGAGAAACTTTGAAAATCGCTTTTCTTATTTTTCAAAAATCATGTGAAAACATCCTGCC
CGAAGGTCTTATAGATGGCCCGAAGACTTAACATCTTGCTCGAAAGACTGACAGATGACCCGAAG
GATTTAATCATCATGCTCGAAAGACTTACTGATGCCTGAAGGACTTACTAATTTTGGAAATAGTT
TACTAGGTAAGAAACTTTGGAAATCGCTTTCTTACTTTTCAAAAATTTCATTTTCTGAAAACATT
AAATGACAAACTTTGAAAATCGCTTTCTCATTTTTCAAAAATAATGTGAAAACATCATGCCCGAA
GGTCTTATAGATGGCCCGAAGGACTTAACAACTTGCTCAAAAGACTGAAAGATGACCCG
Found at i:1517460 original size:41 final size:42
Alignment explanation
Indices: 1517414--1517515 Score: 104
Period size: 41 Copynumber: 2.5 Consensus size: 42
1517404 GAAGGTCTTA
*
1517414 TAGATGGCCCGAATGACTTAA-CATCTTGCTCGAAAGACTGAC
1 TAGATGGCCCGAA-GACTTAATCATCATGCTCGAAAGACTGAC
* * *
1517456 -AGATGACCCG-AGAATTTAATCATCATGCTCGAAAGACTTAC
1 TAGATGGCCCGAAG-ACTTAATCATCATGCTCGAAAGACTGAC
*
1517497 TA-ATGGCCCAAAGGACTTA
1 TAGATGGCCCGAA-GACTTA
1517516 CAAATTTTGG
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
39 1 0.02
40 6 0.12
41 34 0.71
42 6 0.12
43 1 0.02
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.24
Consensus pattern (42 bp):
TAGATGGCCCGAAGACTTAATCATCATGCTCGAAAGACTGAC
Found at i:1519328 original size:2 final size:2
Alignment explanation
Indices: 1519321--1519347 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1519311 TCAGCTTTAT
1519321 TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG T
1519348 ATTATAATTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:1521865 original size:6 final size:6
Alignment explanation
Indices: 1521854--1521896 Score: 68
Period size: 6 Copynumber: 7.0 Consensus size: 6
1521844 ATTAAAGCAG
*
1521854 TGCAAA TGCAAA TGCAAA TGCAAA TGCAAAA TTCAAA TGCAAA
1 TGCAAA TGCAAA TGCAAA TGCAAA TGC-AAA TGCAAA TGCAAA
1521897 AGGTGTTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
6 29 0.85
7 5 0.15
ACGTcount: A:0.51, C:0.16, G:0.14, T:0.19
Consensus pattern (6 bp):
TGCAAA
Found at i:1521890 original size:13 final size:13
Alignment explanation
Indices: 1521857--1521897 Score: 66
Period size: 13 Copynumber: 3.2 Consensus size: 13
1521847 AAAGCAGTGC
1521857 AAATGCAAATGC-
1 AAATGCAAATGCA
1521869 AAATGCAAATGCA
1 AAATGCAAATGCA
*
1521882 AAATTCAAATGCA
1 AAATGCAAATGCA
1521895 AAA
1 AAA
1521898 GGTGTTAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
12 12 0.44
13 15 0.56
ACGTcount: A:0.56, C:0.15, G:0.12, T:0.17
Consensus pattern (13 bp):
AAATGCAAATGCA
Found at i:1524838 original size:23 final size:23
Alignment explanation
Indices: 1524808--1524859 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
1524798 AAATAACCCC
*
1524808 AAATCAACCCTTTCTCATCCCTA
1 AAATCAACCCTCTCTCATCCCTA
* *
1524831 AAATCAACTCTCTCTCATTCCTA
1 AAATCAACCCTCTCTCATCCCTA
1524854 AAATCA
1 AAATCA
1524860 GATCTAAACA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.35, C:0.35, G:0.00, T:0.31
Consensus pattern (23 bp):
AAATCAACCCTCTCTCATCCCTA
Found at i:1525639 original size:3 final size:3
Alignment explanation
Indices: 1525631--1525694 Score: 56
Period size: 3 Copynumber: 20.0 Consensus size: 3
1525621 CCAAAAACTG
* * * *
1525631 TAA TAA TAAA TAAA TAT TAT TAAA TAA TAA TAA TAG TAA TAT TAAA TAA
1 TAA TAA T-AA T-AA TAA TAA TA-A TAA TAA TAA TAA TAA TAA T-AA TAA
1525680 TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA
1525695 ATATTAATGA
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
3 41 0.79
4 11 0.21
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:1525676 original size:22 final size:21
Alignment explanation
Indices: 1525632--1525693 Score: 81
Period size: 22 Copynumber: 2.9 Consensus size: 21
1525622 CAAAAACTGT
*
1525632 AATAATAAATAA-ATATTATTA
1 AATAAT-AATAATATAATATTA
1525653 AATAATAATAATAGTAATATTA
1 AATAATAATAATA-TAATATTA
1525675 AATAATAATAATAATAATA
1 AATAATAATAAT-ATAATA
1525694 AATATTAATG
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
20 5 0.14
21 7 0.19
22 24 0.65
23 1 0.03
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (21 bp):
AATAATAATAATATAATATTA
Found at i:1525678 original size:19 final size:19
Alignment explanation
Indices: 1525631--1525702 Score: 69
Period size: 19 Copynumber: 3.9 Consensus size: 19
1525621 CCAAAAACTG
*
1525631 TAATAATAAAT-A-AATAT
1 TAATAATAAATAATAATAA
* *
1525648 TATTAA-ATAATAATAATAG
1 TAATAATA-AATAATAATAA
*
1525667 TAATATTAAATAATAATAA
1 TAATAATAAATAATAATAA
*
1525686 TAATAATAAATATTAAT
1 TAATAATAAATAATAAT
1525703 GATGACCCGC
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
16 1 0.02
17 8 0.18
18 1 0.02
19 33 0.75
20 1 0.02
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (19 bp):
TAATAATAAATAATAATAA
Found at i:1527580 original size:12 final size:12
Alignment explanation
Indices: 1527563--1527606 Score: 61
Period size: 12 Copynumber: 3.7 Consensus size: 12
1527553 ATTATACGGT
1527563 ATGAACAACACC
1 ATGAACAACACC
*
1527575 ATGAACAGCACC
1 ATGAACAACACC
**
1527587 ATGAACAGTACC
1 ATGAACAACACC
1527599 ATGAACAA
1 ATGAACAA
1527607 ACGTACATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.48, C:0.27, G:0.14, T:0.11
Consensus pattern (12 bp):
ATGAACAACACC
Found at i:1527580 original size:31 final size:31
Alignment explanation
Indices: 1527513--1527581 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 31
1527503 AAACGTATTT
* * **
1527513 ATGAACAGTACTATACTATATGAACAGTACC
1 ATGAACAATACTATACGATATGAACAACACC
* * *
1527544 GTGAACAATATTATACGGTATGAACAACACC
1 ATGAACAATACTATACGATATGAACAACACC
1527575 ATGAACA
1 ATGAACA
1527582 GCACCATGAA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.43, C:0.19, G:0.14, T:0.23
Consensus pattern (31 bp):
ATGAACAATACTATACGATATGAACAACACC
Found at i:1528454 original size:2 final size:2
Alignment explanation
Indices: 1528447--1528474 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1528437 ATTATATTCA
1528447 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1528475 GGATGCATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1529457 original size:42 final size:41
Alignment explanation
Indices: 1529398--1529477 Score: 124
Period size: 42 Copynumber: 1.9 Consensus size: 41
1529388 GATGAAAACA
*
1529398 TTTTGTCACAGTCTTAGTTGATGATTTGTGAAGACAATTAT
1 TTTTGTCACAGTCTTAGTTGATGATTTATGAAGACAATTAT
* *
1529439 TTTTGTCACTAGTCTTAGTTGGTGATTTATGACGACAAT
1 TTTTGTCAC-AGTCTTAGTTGATGATTTATGAAGACAAT
1529478 CACTATTAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
41 9 0.26
42 26 0.74
ACGTcount: A:0.25, C:0.11, G:0.20, T:0.44
Consensus pattern (41 bp):
TTTTGTCACAGTCTTAGTTGATGATTTATGAAGACAATTAT
Found at i:1532002 original size:31 final size:26
Alignment explanation
Indices: 1531942--1531999 Score: 109
Period size: 26 Copynumber: 2.3 Consensus size: 26
1531932 ATGTCACCAT
1531942 AAGATAACACCATATCATAATTGAAA
1 AAGATAACACCATATCATAATTGAAA
1531968 AAGATAACACCATATCATAATTGAAA
1 AAGATAACACCATATCATAATTGAAA
1531994 AA-ATAA
1 AAGATAA
1532000 AGAAAATTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 4 0.12
26 28 0.88
ACGTcount: A:0.57, C:0.14, G:0.07, T:0.22
Consensus pattern (26 bp):
AAGATAACACCATATCATAATTGAAA
Found at i:1532198 original size:60 final size:60
Alignment explanation
Indices: 1532113--1532260 Score: 165
Period size: 60 Copynumber: 2.5 Consensus size: 60
1532103 TTTAGATTGA
* * *
1532113 TCCTTAAACTTTTGAATTTTTTAATTTCATCTCC-AAACTATGAATATCATTCTAAATTAG
1 TCCTTAAACTTTTGAATATTCTAATTTCATC-CCTAAACTATGAACATCATTCTAAATTAG
* * * * * *
1532173 TCCTTAAACTTTTGAACATTCTAATTACATCCCTAAACTATGACCCTCTTTCTAAATTGG
1 TCCTTAAACTTTTGAATATTCTAATTTCATCCCTAAACTATGAACATCATTCTAAATTAG
* *
1532233 T-CTCCAAACTTTTGAATATTCCAATTTC
1 TCCT-TAAACTTTTGAATATTCTAATTTC
1532261 GCCCCCAAAT
Statistics
Matches: 73, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
59 4 0.05
60 69 0.95
ACGTcount: A:0.31, C:0.22, G:0.05, T:0.42
Consensus pattern (60 bp):
TCCTTAAACTTTTGAATATTCTAATTTCATCCCTAAACTATGAACATCATTCTAAATTAG
Found at i:1532519 original size:60 final size:60
Alignment explanation
Indices: 1532410--1532578 Score: 155
Period size: 60 Copynumber: 2.8 Consensus size: 60
1532400 GTTTAGGGTG
* ** * *
1532410 AATTGAAATGTTCAAAAAGTTTGGGGACTAATTTAGACTGAATACCATAGTTTGGTGATAA
1 AATTGAAATGTT-AAAAAATTTAAGGACTAATTTAGAATGAATACCATAGTTTAGTGATAA
* * * *
1532471 AATTGAAATGTTAAAAAATTTAAGGATTGATTTAGAATG-ATAGTCATAGTTTAGTGATGA
1 AATTGAAATGTTAAAAAATTTAAGGACTAATTTAGAATGAATA-CCATAGTTTAGTGATAA
* * * * *
1532531 AATT-AAATTATTTAGAAATTTAAGGACCAATTTAAAATG-ATGACCATA
1 AATTGAAA-TGTTAAAAAATTTAAGGACTAATTTAGAATGAAT-ACCATA
1532579 AATTAAGAAT
Statistics
Matches: 88, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
59 6 0.07
60 69 0.78
61 13 0.15
ACGTcount: A:0.42, C:0.06, G:0.18, T:0.34
Consensus pattern (60 bp):
AATTGAAATGTTAAAAAATTTAAGGACTAATTTAGAATGAATACCATAGTTTAGTGATAA
Found at i:1535994 original size:20 final size:20
Alignment explanation
Indices: 1535971--1536045 Score: 134
Period size: 20 Copynumber: 3.8 Consensus size: 20
1535961 ATTCGCGTTG
1535971 CATTTCGCGTTGCGATTTTT
1 CATTTCGCGTTGCGATTTTT
*
1535991 CATTTCGCGTTGCGATTTTC
1 CATTTCGCGTTGCGATTTTT
1536011 CATTTCGCGTTGCGA-TTTT
1 CATTTCGCGTTGCGATTTTT
1536030 CATTTCGCGTTGCGAT
1 CATTTCGCGTTGCGAT
1536046 AGTCTACAAT
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
19 18 0.35
20 34 0.65
ACGTcount: A:0.11, C:0.23, G:0.21, T:0.45
Consensus pattern (20 bp):
CATTTCGCGTTGCGATTTTT
Found at i:1536062 original size:40 final size:41
Alignment explanation
Indices: 1535978--1536111 Score: 145
Period size: 40 Copynumber: 3.3 Consensus size: 41
1535968 TTGCATTTCG
* * *
1535978 CGTTGCGATTTTTCATTTCGCGTTGCGAT--T-TTCCATTT
1 CGTTGCGATTTTTCATTTCGCGTTGCGATAGTCTACAATGT
1536016 CGCGTTGCGA-TTTTCATTTCGCGTTGCGATAGTCTACAATGT
1 --CGTTGCGATTTTTCATTTCGCGTTGCGATAGTCTACAATGT
* *
1536058 CGTTGCGATTTTTCAAATT--CGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATTTTTC-ATTTCGCGTTGCGATAGTCTACA-ATGT
1536099 CGTTGCGATTTTT
1 CGTTGCGATTTTT
1536112 TAAATTCGTT
Statistics
Matches: 83, Mismatches: 5, Indels: 11
0.84 0.05 0.11
Matches are distributed among these distances:
39 20 0.24
40 33 0.40
41 22 0.27
42 8 0.10
ACGTcount: A:0.15, C:0.19, G:0.22, T:0.44
Consensus pattern (41 bp):
CGTTGCGATTTTTCATTTCGCGTTGCGATAGTCTACAATGT
Found at i:1536081 original size:19 final size:19
Alignment explanation
Indices: 1536057--1536126 Score: 68
Period size: 19 Copynumber: 3.5 Consensus size: 19
1536047 GTCTACAATG
1536057 TCGTTGCGATTTTTCAAAT
1 TCGTTGCGATTTTTCAAAT
* * **
1536076 TCGTTGCGATAGTCTACAGTT
1 TCGTTGCGAT--TTTTCAAAT
*
1536097 GTCGTTGCGATTTTTTAAAT
1 -TCGTTGCGATTTTTCAAAT
1536117 TCGTTGCGAT
1 TCGTTGCGAT
1536127 AGTATACAGT
Statistics
Matches: 39, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
19 20 0.51
20 4 0.10
21 5 0.13
22 10 0.26
ACGTcount: A:0.19, C:0.16, G:0.21, T:0.44
Consensus pattern (19 bp):
TCGTTGCGATTTTTCAAAT
Found at i:1536104 original size:22 final size:22
Alignment explanation
Indices: 1536037--1536170 Score: 102
Period size: 22 Copynumber: 6.4 Consensus size: 22
1536027 TTTCATTTCG
1536037 CGTTGCGATAGTCTACA-ATGT
1 CGTTGCGATAGTCTACAGATGT
* * *
1536058 CGTTGCGAT--TTTTCAAAT-T
1 CGTTGCGATAGTCTACAGATGT
*
1536077 CGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATAGTCTACAGATGT
** *
1536099 CGTTGCGATTTTTTA-A-AT-T
1 CGTTGCGATAGTCTACAGATGT
* *
1536118 CGTTGCGATAGTATACAGTTGT
1 CGTTGCGATAGTCTACAGATGT
** * *
1536140 TATTGCGAAAGTCTACAGTTGT
1 CGTTGCGATAGTCTACAGATGT
1536162 CGTTGCGAT
1 CGTTGCGAT
1536171 TTTCCAAATT
Statistics
Matches: 85, Mismatches: 21, Indels: 13
0.71 0.18 0.11
Matches are distributed among these distances:
19 27 0.32
20 4 0.05
21 16 0.19
22 38 0.45
ACGTcount: A:0.22, C:0.16, G:0.23, T:0.40
Consensus pattern (22 bp):
CGTTGCGATAGTCTACAGATGT
Found at i:1536147 original size:41 final size:41
Alignment explanation
Indices: 1536037--1536139 Score: 172
Period size: 41 Copynumber: 2.5 Consensus size: 41
1536027 TTTCATTTCG
*
1536037 CGTTGCGATAGTCTACA-ATGTCGTTGCGATTTTTCAAATT
1 CGTTGCGATAGTCTACAGTTGTCGTTGCGATTTTTCAAATT
*
1536077 CGTTGCGATAGTCTACAGTTGTCGTTGCGATTTTTTAAATT
1 CGTTGCGATAGTCTACAGTTGTCGTTGCGATTTTTCAAATT
*
1536118 CGTTGCGATAGTATACAGTTGT
1 CGTTGCGATAGTCTACAGTTGT
1536140 TATTGCGAAA
Statistics
Matches: 59, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
40 17 0.29
41 42 0.71
ACGTcount: A:0.21, C:0.16, G:0.22, T:0.41
Consensus pattern (41 bp):
CGTTGCGATAGTCTACAGTTGTCGTTGCGATTTTTCAAATT
Found at i:1536269 original size:22 final size:22
Alignment explanation
Indices: 1536191--1536269 Score: 92
Period size: 22 Copynumber: 3.7 Consensus size: 22
1536181 CGTTGCGATA
*
1536191 GTAGACTATCGCAACAACAACT
1 GTAGACTATCGCAACGACAACT
1536213 GTAGACTATCGCAACG--AA-T
1 GTAGACTATCGCAACGACAACT
* ** *
1536232 TTAGAAAATCACAACGACAACT
1 GTAGACTATCGCAACGACAACT
1536254 GTAGACTATCGCAACG
1 GTAGACTATCGCAACG
1536270 CGAACTGGAA
Statistics
Matches: 45, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
19 13 0.29
20 2 0.04
21 2 0.04
22 28 0.62
ACGTcount: A:0.41, C:0.24, G:0.16, T:0.19
Consensus pattern (22 bp):
GTAGACTATCGCAACGACAACT
Found at i:1536275 original size:22 final size:22
Alignment explanation
Indices: 1536191--1536314 Score: 77
Period size: 22 Copynumber: 5.9 Consensus size: 22
1536181 CGTTGCGATA
*
1536191 GTAGACTATCGCAACAAC-AACT
1 GTAGACTATCGCAAC-GCGAACT
1536213 GTAGACTATCGCAA--CGAA-T
1 GTAGACTATCGCAACGCGAACT
* ** *
1536232 TTAGAAAATCACAACGAC-AACT
1 GTAGACTATCGCAACG-CGAACT
1536254 GTAGACTATCGCAACGCGAACT
1 GTAGACTATCGCAACGCGAACT
** *
1536276 G--GAAAATCGCAACGCG-ATT
1 GTAGACTATCGCAACGCGAACT
*
1536295 TTCA-ACTATCGCAACGCGAA
1 GT-AGACTATCGCAACGCGAA
1536315 ATGGAAAATC
Statistics
Matches: 78, Mismatches: 14, Indels: 20
0.70 0.12 0.18
Matches are distributed among these distances:
19 14 0.18
20 15 0.19
21 15 0.19
22 34 0.44
ACGTcount: A:0.39, C:0.25, G:0.18, T:0.19
Consensus pattern (22 bp):
GTAGACTATCGCAACGCGAACT
Found at i:1536286 original size:20 final size:20
Alignment explanation
Indices: 1536261--1536333 Score: 74
Period size: 20 Copynumber: 3.6 Consensus size: 20
1536251 ACTGTAGACT
*
1536261 ATCGCAACGCGAACTGGAAA
1 ATCGCAACGCGAAATGGAAA
** ** *
1536281 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGAAATGGAA-A
1536302 ATCGCAACGCGAAATGGAAA
1 ATCGCAACGCGAAATGGAAA
*
1536322 ATCGCAATGCGA
1 ATCGCAACGCGA
1536334 TTTTCAACTA
Statistics
Matches: 41, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
20 26 0.63
21 15 0.37
ACGTcount: A:0.37, C:0.25, G:0.22, T:0.16
Consensus pattern (20 bp):
ATCGCAACGCGAAATGGAAA
Found at i:1536303 original size:41 final size:41
Alignment explanation
Indices: 1536258--1536358 Score: 184
Period size: 41 Copynumber: 2.5 Consensus size: 41
1536248 ACAACTGTAG
*
1536258 ACTATCGCAACGCGAACTGGAAAATCGCAACGCGATTTTCA
1 ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
*
1536299 ACTATCGCAACGCGAAATGGAAAATCGCAATGCGATTTTCA
1 ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
1536340 ACTATCGCAACGCGAAATG
1 ACTATCGCAACGCGAAATG
1536359 CAACGCGAAT
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 58 1.00
ACGTcount: A:0.36, C:0.25, G:0.20, T:0.20
Consensus pattern (41 bp):
ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
Found at i:1536362 original size:21 final size:21
Alignment explanation
Indices: 1536258--1536362 Score: 88
Period size: 21 Copynumber: 5.1 Consensus size: 21
1536248 ACAACTGTAG
* *
1536258 ACTATCGCAACGCGAACTGGA
1 ACTATCGCAACGCGAAATGCA
* ** *
1536279 A-AATCGCAACGCGATTTTCA
1 ACTATCGCAACGCGAAATGCA
*
1536299 ACTATCGCAACGCGAAATGGA
1 ACTATCGCAACGCGAAATGCA
* * ** *
1536320 A-AATCGCAATGCGATTTTCA
1 ACTATCGCAACGCGAAATGCA
1536340 ACTATCGCAACGCGAAATGCA
1 ACTATCGCAACGCGAAATGCA
1536361 AC
1 AC
1536363 GCGAATTTGC
Statistics
Matches: 61, Mismatches: 21, Indels: 4
0.71 0.24 0.05
Matches are distributed among these distances:
20 29 0.48
21 32 0.52
ACGTcount: A:0.36, C:0.26, G:0.19, T:0.19
Consensus pattern (21 bp):
ACTATCGCAACGCGAAATGCA
Found at i:1537703 original size:31 final size:32
Alignment explanation
Indices: 1537642--1537705 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 32
1537632 TTCATAATAT
*
1537642 TATTATATTATAATTTTATGTTAGGCTTACAA
1 TATTATATTATAATTTTATCTTAGGCTTACAA
*
1537674 TATTA-ATTATAGATTTTTTCTTAGG-TTACAA
1 TATTATATTATA-ATTTTATCTTAGGCTTACAA
1537705 T
1 T
1537706 TTTTTTATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 13 0.45
32 16 0.55
ACGTcount: A:0.33, C:0.06, G:0.09, T:0.52
Consensus pattern (32 bp):
TATTATATTATAATTTTATCTTAGGCTTACAA
Found at i:1538747 original size:20 final size:20
Alignment explanation
Indices: 1538722--1538796 Score: 132
Period size: 20 Copynumber: 3.8 Consensus size: 20
1538712 AATGTAATTT
1538722 GTGTACCGATACACTTAAGA
1 GTGTACCGATACACTTAAGA
1538742 GTGTACCGATACACTTAAGA
1 GTGTACCGATACACTTAAGA
1538762 GTGTACCGATACACTTAAGA
1 GTGTACCGATACACTTAAGA
* *
1538782 GTATATCGATACACT
1 GTGTACCGATACACT
1538797 CGTCGGGTTT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 53 1.00
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.27
Consensus pattern (20 bp):
GTGTACCGATACACTTAAGA
Found at i:1539168 original size:20 final size:18
Alignment explanation
Indices: 1539122--1539161 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 18
1539112 TAGATTCTAC
1539122 AACAAATTTTATATCAAAAA
1 AACAAA-TTT-TATCAAAAA
*
1539142 CACAAATTTTATCAAAAA
1 AACAAATTTTATCAAAAA
1539160 AA
1 AA
1539162 TCGAAATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
18 10 0.56
19 3 0.17
20 5 0.28
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (18 bp):
AACAAATTTTATCAAAAA
Found at i:1542844 original size:19 final size:20
Alignment explanation
Indices: 1542809--1542848 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
1542799 GGCTGAAATT
1542809 ACTGTAGCAGTGTATCGATAC
1 ACTGTAGCAG-GTATCGATAC
1542830 ACTGTAGCA-GTATCGATAC
1 ACTGTAGCAGGTATCGATAC
1542849 CCATTTCACA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 10 0.53
21 9 0.47
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (20 bp):
ACTGTAGCAGGTATCGATAC
Found at i:1542944 original size:20 final size:20
Alignment explanation
Indices: 1542889--1542958 Score: 61
Period size: 20 Copynumber: 3.5 Consensus size: 20
1542879 CACTGTTCAT
* * *
1542889 TACTGTTCACACAGTATCTG
1 TACTATTCATACAGTATATG
* *
1542909 TACTATTTATATAGTATATG
1 TACTATTCATACAGTATATG
* * *
1542929 TAGTATTCATACAGTACA-A
1 TACTATTCATACAGTATATG
1542948 TACTATTCATA
1 TACTATTCATA
1542959 TAAACATTTT
Statistics
Matches: 39, Mismatches: 11, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
19 10 0.26
20 29 0.74
ACGTcount: A:0.34, C:0.16, G:0.10, T:0.40
Consensus pattern (20 bp):
TACTATTCATACAGTATATG
Found at i:1549548 original size:60 final size:60
Alignment explanation
Indices: 1549399--1549550 Score: 157
Period size: 60 Copynumber: 2.5 Consensus size: 60
1549389 GTATCTAAAC
* * *
1549399 TTTTT-AACATTCCAATTTCATCCTTAAACTATGACTATTATTCTAAATTAATCCTCAAA
1 TTTTTGAACATTCCAATTTCATCCATAAACTATGACTATCATTCTAAATTAATCCCCAAA
* * ** * * **
1549458 TTTTTGAATATTTCAATTTCATCCCCAAACTCTGGC-ACTCATTCTAAATTGGTCCCCAAA
1 TTTTTGAACATTCCAATTTCATCCATAAACTATGACTA-TCATTCTAAATTAATCCCCAAA
*
1549518 TTTTTTGAACAATCCAATTTCAT-CATAAACTAT
1 -TTTTTGAACATTCCAATTTCATCCATAAACTAT
1549551 ACGTATATAC
Statistics
Matches: 74, Mismatches: 16, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
59 6 0.08
60 49 0.66
61 19 0.26
ACGTcount: A:0.33, C:0.22, G:0.05, T:0.40
Consensus pattern (60 bp):
TTTTTGAACATTCCAATTTCATCCATAAACTATGACTATCATTCTAAATTAATCCCCAAA
Found at i:1560485 original size:51 final size:51
Alignment explanation
Indices: 1560409--1560509 Score: 202
Period size: 51 Copynumber: 2.0 Consensus size: 51
1560399 ACCATTGGCT
1560409 AAATTTATTAATCTATCAAGGAGTTCACTTGAGGAAGAAGTTAGTTGTGTA
1 AAATTTATTAATCTATCAAGGAGTTCACTTGAGGAAGAAGTTAGTTGTGTA
1560460 AAATTTATTAATCTATCAAGGAGTTCACTTGAGGAAGAAGTTAGTTGTGT
1 AAATTTATTAATCTATCAAGGAGTTCACTTGAGGAAGAAGTTAGTTGTGT
1560510 TTTGTGAGTT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.36
Consensus pattern (51 bp):
AAATTTATTAATCTATCAAGGAGTTCACTTGAGGAAGAAGTTAGTTGTGTA
Found at i:1562603 original size:23 final size:23
Alignment explanation
Indices: 1562549--1562603 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
1562539 CAAGTCAAAA
** *
1562549 TTTTATTTTTTAAACTCTTCATT
1 TTTTATTTTTTAAACTCTAAATC
1562572 TTTTATTTTTTAAAGCTCTAAATC
1 TTTTATTTTTTAAA-CTCTAAATC
1562596 TTTT-TTTT
1 TTTTATTTT
1562604 CTTCAAAATC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 18 0.64
24 10 0.36
ACGTcount: A:0.22, C:0.11, G:0.02, T:0.65
Consensus pattern (23 bp):
TTTTATTTTTTAAACTCTAAATC
Found at i:1569269 original size:59 final size:59
Alignment explanation
Indices: 1569200--1569336 Score: 186
Period size: 59 Copynumber: 2.3 Consensus size: 59
1569190 TAGTAGGCTG
** *
1569200 CATATTCGGGAATACACTAAAGGATACCTAGTGTATAAGGTGGGCACGACCTTATGTGT
1 CATATTCGGGAATACACTAAAGGATACCTAGTACATAAGGTGGACACGACCTTATGTGT
* ** * *
1569259 CATATTCGGGATTGTACTTAAGGATACCTAGTACATATGGTGGACACGACCTTATGTGT
1 CATATTCGGGAATACACTAAAGGATACCTAGTACATAAGGTGGACACGACCTTATGTGT
1569318 CATATTCGGG-ATAACACTA
1 CATATTCGGGAAT-ACACTA
1569337 CGGTGCTTAT
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
58 1 0.02
59 64 0.98
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (59 bp):
CATATTCGGGAATACACTAAAGGATACCTAGTACATAAGGTGGACACGACCTTATGTGT
Found at i:1569529 original size:47 final size:45
Alignment explanation
Indices: 1569437--1569563 Score: 175
Period size: 47 Copynumber: 2.8 Consensus size: 45
1569427 GTAAGCATAC
* * *
1569437 AAATAAGTTTTACGAGCTTTTGGAAT-AATGGCAAGTATATGGGTA
1 AAATAAG-CTTACGAGCTTATGGAATAAATGGTAAGTATATGGGTA
* *
1569482 AAATAAGCTTACGAGCTTATGGAATTTAAATGGTAAGTATTTTGGTA
1 AAATAAGCTTACGAGCTTATGGAA--TAAATGGTAAGTATATGGGTA
1569529 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAG
1 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAG
1569564 GGATTTTATA
Statistics
Matches: 74, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
44 15 0.20
45 18 0.24
46 1 0.01
47 40 0.54
ACGTcount: A:0.38, C:0.07, G:0.23, T:0.32
Consensus pattern (45 bp):
AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATGGGTA
Found at i:1570599 original size:28 final size:28
Alignment explanation
Indices: 1570568--1570648 Score: 99
Period size: 30 Copynumber: 2.8 Consensus size: 28
1570558 AAAGGATGCA
*
1570568 CCTAATAACAAATATTGAAAAATAGGCC
1 CCTAATAACAAATATTGAAAAATAGCCC
* *
1570596 CCTAATAACAAGTATTGAAAAAATTGCCC
1 CCTAATAACAAATATTG-AAAAATAGCCC
*
1570625 CCTTAATAACAAATGTTAGAAAAA
1 CC-TAATAACAAATATT-GAAAAA
1570649 ATATTGGCAA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
28 16 0.36
29 11 0.24
30 17 0.38
31 1 0.02
ACGTcount: A:0.49, C:0.17, G:0.10, T:0.23
Consensus pattern (28 bp):
CCTAATAACAAATATTGAAAAATAGCCC
Found at i:1570634 original size:30 final size:29
Alignment explanation
Indices: 1570568--1570651 Score: 107
Period size: 28 Copynumber: 2.9 Consensus size: 29
1570558 AAAGGATGCA
*
1570568 CCTAATAACAAATATTG-AAAAATAGGCC
1 CCTAATAACAAATATTGAAAAAATAGCCC
* *
1570596 CCTAATAACAAGTATTGAAAAAATTGCCC
1 CCTAATAACAAATATTGAAAAAATAGCCC
*
1570625 CCTTAATAACAAATGTTAGAAAAAATA
1 CC-TAATAACAAATATT-GAAAAAATA
1570652 TTGGCAAAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
28 16 0.34
29 11 0.23
30 12 0.26
31 8 0.17
ACGTcount: A:0.50, C:0.17, G:0.10, T:0.24
Consensus pattern (29 bp):
CCTAATAACAAATATTGAAAAAATAGCCC
Found at i:1570749 original size:31 final size:32
Alignment explanation
Indices: 1570709--1570776 Score: 84
Period size: 32 Copynumber: 2.2 Consensus size: 32
1570699 AGTAGGCCTC
* * *
1570709 TAATAATAAATATTA-GAAAAAATTAAGCCCA
1 TAATTATAAACATTAGGAAAAAATTAAACCCA
* *
1570740 TAATTATAAACATTAGGAAATAATTAAACCCT
1 TAATTATAAACATTAGGAAAAAATTAAACCCA
1570772 TAATT
1 TAATT
1570777 GCAAGTATTA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
31 13 0.42
32 18 0.58
ACGTcount: A:0.53, C:0.10, G:0.06, T:0.31
Consensus pattern (32 bp):
TAATTATAAACATTAGGAAAAAATTAAACCCA
Found at i:1575535 original size:17 final size:18
Alignment explanation
Indices: 1575508--1575542 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
1575498 TGTGCTTTCA
1575508 ATTTCTTTATTTTATAAT
1 ATTTCTTTATTTTATAAT
*
1575526 ATTT-TTTATTTTTTAAT
1 ATTTCTTTATTTTATAAT
1575543 TTATCCCTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (18 bp):
ATTTCTTTATTTTATAAT
Found at i:1591860 original size:54 final size:53
Alignment explanation
Indices: 1591795--1592168 Score: 496
Period size: 54 Copynumber: 6.9 Consensus size: 53
1591785 TACCAAATAA
* * *
1591795 GCACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAATCATTTC
1 GCACTATGTGTGCAATTCACGGAATTCATCATATGTTGATGAACAACCATTTC
* * *
1591848 AGCACTATGTGTGCAATTCACGAAATTCATCATATGTTGATGAACAATCGTTTC
1 -GCACTATGTGTGCAATTCACGGAATTCATCATATGTTGATGAACAACCATTTC
* * * *
1591902 GACACTATGTGTGTAACTCACGGAATTCATCATATGTTGGTGAACAACCGTTTC
1 G-CACTATGTGTGCAATTCACGGAATTCATCATATGTTGATGAACAACCATTTC
* * * *
1591956 AACACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAACAATCGTTTC
1 -GCACTATGTGTGCAATTCACGGAATTCATCATATGTTGATGAACAACCATTTC
*
1592010 GACACTATGTGTGCAATTCACAGAATTCATCATATGTTGATGAACAACCATTTC
1 G-CACTATGTGTGCAATTCACGGAATTCATCATATGTTGATGAACAACCATTTC
* * * * *
1592064 GGCATTATGTGTGTAACTCACAGAATTCATCATATATTGATGAACAACCATTTC
1 -GCACTATGTGTGCAATTCACGGAATTCATCATATGTTGATGAACAACCATTTC
* *
1592118 GACACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAACGACCAT
1 G-CACTATGTGTGCAATTCACGGAATTCATCATATGTTGATGAACAACCAT
1592169 ATAGGCACTA
Statistics
Matches: 284, Mismatches: 31, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
53 2 0.01
54 281 0.99
55 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (53 bp):
GCACTATGTGTGCAATTCACGGAATTCATCATATGTTGATGAACAACCATTTC
Found at i:1591985 original size:108 final size:108
Alignment explanation
Indices: 1591796--1592168 Score: 557
Period size: 108 Copynumber: 3.5 Consensus size: 108
1591786 ACCAAATAAG
* *
1591796 CACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAATCATTTCAGCACTATGTGTG
1 CACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAACAACCATTTCAGCACTATGTGTG
*
1591861 CAATTCACGAAATTCATCATATGTTGATGAACAATCGTTTCGA
66 CAATTCACGGAATTCATCATATGTTGATGAACAATCGTTTCGA
* * * * * * *
1591904 CACTATGTGTGTAACTCACGGAATTCATCATATGTTGGTGAACAACCGTTTCAACACTAAGTGTG
1 CACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAACAACCATTTCAGCACTATGTGTG
1591969 CAATTCACGGAATTCATCATATGTTGATGAACAATCGTTTCGA
66 CAATTCACGGAATTCATCATATGTTGATGAACAATCGTTTCGA
* * * *
1592012 CACTATGTGTGCAATTCACAGAATTCATCATATGTTGATGAACAACCATTTCGGCATTATGTGTG
1 CACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAACAACCATTTCAGCACTATGTGTG
* * * * * *
1592077 TAACTCACAGAATTCATCATATATTGATGAACAACCATTTCGA
66 CAATTCACGGAATTCATCATATGTTGATGAACAATCGTTTCGA
*
1592120 CACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAACGACCAT
1 CACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAACAACCAT
1592169 ATAGGCACTA
Statistics
Matches: 237, Mismatches: 28, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
108 237 1.00
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (108 bp):
CACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAACAACCATTTCAGCACTATGTGTG
CAATTCACGGAATTCATCATATGTTGATGAACAATCGTTTCGA
Found at i:1592075 original size:162 final size:162
Alignment explanation
Indices: 1591796--1592162 Score: 603
Period size: 162 Copynumber: 2.3 Consensus size: 162
1591786 ACCAAATAAG
*
1591796 CACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAATCATTTCAGCACTATGTGTG
1 CACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAACAATCATTTCAGCACTATGTGTG
* * *
1591861 CAATTCACGAAATTCATCATATGTTGATGAACAATCGTTTCGACACTATGTGTGTAACTCACGGA
66 CAATTCACGAAATTCATCATATGTTGATGAACAACCATTTCGACACTATGTGTGTAACTCACAGA
* * *
1591926 ATTCATCATATGTTGGTGAACAACCGTTTCAA
131 ATTCATCATATATTGATGAACAACCATTTCAA
*
1591958 CACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAACAATCGTTTC-GACACTATGTGT
1 CACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAACAATCATTTCAG-CACTATGTGT
* *
1592022 GCAATTCAC-AGAATTCATCATATGTTGATGAACAACCATTTCGGCATTATGTGTGTAACTCACA
65 GCAATTCACGA-AATTCATCATATGTTGATGAACAACCATTTCGACACTATGTGTGTAACTCACA
*
1592086 GAATTCATCATATATTGATGAACAACCATTTCGA
129 GAATTCATCATATATTGATGAACAACCATTTCAA
1592120 CACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAAC
1 CACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAAC
1592163 GACCATATAG
Statistics
Matches: 192, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
161 2 0.01
162 190 0.99
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (162 bp):
CACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAACAATCATTTCAGCACTATGTGTG
CAATTCACGAAATTCATCATATGTTGATGAACAACCATTTCGACACTATGTGTGTAACTCACAGA
ATTCATCATATATTGATGAACAACCATTTCAA
Done.