genome.fa.s789.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000789.1 Hibiscus syriacus cultivar Beakdansim tig00001528_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  130994

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11459--11513	26	2.2	24	81	12	58	60	3	7	29	1.41
17908--17944	14	2.6	14	91	0	56	10	27	8	54	1.63
27710--27759	15	3.1	17	77	11	59	38	0	12	50	1.40
28456--28528	31	2.4	31	83	0	92	26	24	13	35	1.93
39389--39456	13	5.2	13	92	0	109	26	22	17	33	1.96
39428--39593	85	2.0	85	83	7	212	30	21	18	30	1.96
39613--39694	2	41.0	2	95	4	148	48	1	0	50	1.08
43499--43534	19	1.9	18	88	5	54	33	0	5	61	1.19
44112--44136	9	2.8	9	100	0	50	44	0	24	32	1.54
52213--52267	23	2.5	22	88	5	76	27	23	16	32	1.96
52537--52567	16	1.9	16	93	0	53	25	6	16	51	1.68
54374--54398	13	1.9	13	100	0	50	28	0	16	56	1.41
60713--60766	20	2.7	20	88	0	72	50	0	20	29	1.49
73598--73627	15	2.0	15	93	0	51	13	50	26	10	1.73
76279--76396	42	2.8	42	94	0	209	17	18	18	44	1.87
80908--80955	21	2.3	21	92	0	78	27	18	10	43	1.82
83600--83664	18	3.4	18	72	12	67	47	16	6	29	1.71
83580--83662	39	2.1	39	97	0	157	49	18	6	26	1.70
83692--83736	13	3.5	13	80	14	58	24	28	0	46	1.53
83692--83740	25	2.0	24	88	8	71	24	28	0	46	1.53
83813--83850	19	2.1	18	85	14	51	26	18	10	44	1.82
87970--88033	20	3.3	19	75	4	65	40	20	9	29	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88018--88065	20	2.4	21	86	10	73	35	18	12	33	1.89
93374--93472	20	4.9	20	79	7	103	41	17	11	30	1.84
93364--93478	60	1.9	60	89	0	176	40	17	12	30	1.86
99099--99143	21	2.1	21	87	0	63	31	24	24	20	1.98
101831--102036	95	2.2	96	78	4	211	34	16	20	27	1.95
102458--102770	79	4.0	79	87	1	466	36	11	23	29	1.89
107039--107072	16	2.1	16	100	0	68	11	35	23	29	1.90
108945--109135	95	2.0	96	84	1	249	34	16	23	26	1.95
109581--109893	79	4.0	79	91	0	509	35	11	23	29	1.90
118734--118801	20	3.5	20	75	15	79	38	11	25	25	1.89
119275--119530	54	4.8	54	85	0	336	33	19	16	31	1.94
119278--119362	27	3.2	26	64	29	61	30	21	17	30	1.96
119275--119530	108	2.4	108	90	1	390	33	19	16	31	1.94
126594--126653	31	2.0	31	81	9	72	46	8	6	38	1.60

Tables:   1

The End!