genome.fa.s7892.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007892.1 Hibiscus syriacus cultivar Beakdansim tig00110274_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  177259

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
621--689	33	2.1	33	83	5	86	30	36	1	31	1.67
6255--6358	33	3.1	33	82	9	95	30	36	1	30	1.69
7263--7311	26	2.0	25	92	8	82	36	22	22	18	1.95
7420--7482	27	2.3	28	86	2	83	63	11	14	11	1.52
11679--11728	24	2.0	26	92	7	86	34	24	22	20	1.97
16918--17748	413	2.0	413	99	0	1653	30	16	23	29	1.96
20627--20676	21	2.5	20	84	15	59	12	28	0	60	1.32
20982--21105	65	1.9	65	93	0	212	20	25	23	30	1.99
21941--21976	14	2.6	14	91	8	56	80	0	19	0	0.71
21941--21976	5	7.6	5	87	12	58	80	0	19	0	0.71
24594--24623	13	2.4	13	94	5	53	43	0	30	26	1.55
28141--28253	60	1.9	60	84	0	154	31	16	26	24	1.96
35719--35749	8	3.9	8	100	0	62	22	25	12	38	1.90
35820--35853	13	2.8	12	91	8	59	0	23	0	76	0.79
46424--46457	16	2.1	17	89	10	54	23	0	5	70	1.09
51381--51440	30	2.0	31	83	3	77	28	10	10	51	1.67
52330--52382	20	2.7	20	85	2	72	35	15	9	39	1.79
53540--53720	90	2.0	91	89	2	276	20	28	23	27	1.99
55014--55068	23	2.3	26	84	15	82	60	10	18	10	1.59
55068--55096	5	6.0	5	92	8	51	79	0	20	0	0.74
65053--65104	19	2.6	21	90	6	81	46	5	13	34	1.67
70798--70857	30	2.0	31	86	3	86	28	8	10	53	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72234--72285	21	2.6	21	90	6	81	32	13	7	46	1.72
72696--72726	15	2.1	15	93	0	53	12	16	0	70	1.16
75512--75548	17	2.1	18	90	5	58	37	18	5	37	1.74
76354--76405	21	2.6	21	87	6	72	32	15	7	44	1.75
77682--77727	18	2.5	18	92	3	74	34	15	6	43	1.72
78462--78498	13	3.1	12	88	11	58	83	0	16	0	0.64
78449--78521	21	3.4	22	75	17	73	79	2	15	2	0.96
78443--78535	42	2.3	40	80	12	102	77	3	16	3	1.03
80992--81051	30	2.0	31	86	3	86	28	8	10	53	1.63
81947--81997	19	2.6	20	90	3	77	35	13	7	43	1.73
85898--85966	33	2.1	33	83	5	86	31	1	36	30	1.67
89940--90008	33	2.1	33	83	5	86	31	1	36	30	1.67
111395--111461	32	2.1	33	81	13	77	59	0	23	16	1.37
111950--111999	19	2.6	19	90	0	73	46	6	16	32	1.71
112788--112839	19	2.6	21	87	6	72	46	7	15	30	1.74
116825--116876	19	2.6	21	87	6	72	46	7	15	30	1.74
126162--126204	11	3.8	11	75	6	50	2	16	2	79	0.95
126238--126268	15	2.0	16	93	6	55	0	16	0	83	0.64
127029--127079	19	2.6	20	87	3	68	45	5	15	33	1.71
130188--130322	28	4.9	28	69	12	109	27	20	10	42	1.84
130188--130349	81	2.0	80	92	1	270	27	22	10	39	1.87
131269--131326	26	2.2	26	90	0	98	18	12	24	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131588--131645	25	2.4	24	91	5	98	72	8	5	13	1.26
140571--140618	21	2.2	22	85	7	62	0	12	10	77	1.00
140580--140618	12	3.6	11	87	12	55	0	10	7	82	0.86
140588--140619	12	2.7	12	100	0	64	0	12	6	81	0.87
140640--141016	186	2.0	189	96	3	708	33	17	22	27	1.96
141570--141674	50	2.3	48	84	12	132	50	14	1	33	1.54
149774--149907	28	4.9	28	69	14	118	28	19	11	41	1.86
149774--149934	80	2.0	80	92	0	268	28	21	11	38	1.88
151636--151687	21	2.6	20	90	6	79	36	13	5	44	1.68
152229--152273	11	4.1	11	82	5	56	71	4	11	13	1.29
152229--152270	22	1.9	22	90	9	68	69	4	11	14	1.34
155831--155856	10	2.6	10	100	0	52	0	0	7	92	0.39
156207--156250	11	4.2	10	82	8	52	70	4	11	13	1.31
156207--156247	21	1.9	21	90	5	64	68	4	12	14	1.36
156734--156776	22	1.9	23	85	4	61	53	13	4	27	1.60
159646--159742	13	8.0	12	72	22	62	28	3	37	30	1.73
159631--159743	36	3.2	36	92	1	174	27	3	36	32	1.74
164112--164180	33	2.1	33	83	5	86	31	1	36	30	1.67
164166--164262	13	8.0	12	72	22	62	28	3	37	30	1.73
164151--164263	36	3.2	36	92	1	174	27	3	36	32	1.74
169367--169420	20	2.6	21	76	2	56	0	12	12	74	1.08
169385--169446	8	7.0	8	79	13	61	1	6	9	82	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
169374--169409	18	1.9	18	88	5	54	0	11	11	77	0.99
169374--169437	30	2.2	28	88	8	92	0	9	10	79	0.93
169393--169421	12	2.4	12	100	0	58	0	13	6	79	0.93
169374--169437	20	3.4	19	78	17	62	0	9	10	79	0.93
172508--172554	1	47.0	1	86	0	67	0	0	6	93	0.34
172501--172554	28	1.9	28	88	0	81	0	1	9	88	0.58
172871--172911	21	2.0	21	90	9	66	68	4	12	14	1.36
177011--177076	10	6.0	10	77	19	62	0	6	9	84	0.76

Tables:   1

The End!