Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01007894.1 Hibiscus syriacus cultivar Beakdansim tig00110279_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1425917
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


File 7 of 7

Found at i:1424539 original size:165 final size:164

Alignment explanation


    Indices: 1424259--1424937  Score: 923
    Period size: 165  Copynumber: 4.1  Consensus size: 164

    1424249 GAAGGACTAT

                                         *     *                      *   *  
    1424259 TGCCAACCAAAGACCTTCGAGTTCGACTATGCTCAACTCCAAGGCACATCATTTGCAGTATAGCT
          1 TGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACT

                          *                                                  
    1424324 TAAGTCGAGAAGGGATATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACAT
         66 TAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACAT

                                  *            
    1424389 CATTTATAGCATAACTCAAGGCTAGAAGGGTTATC
        131 CATTTA-AGCATAACTCAAGGCGAGAAGGGTTATC

              *                                                            * 
    1424424 TGTC-ACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGC
          1 TGCCAACC-AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAAC

                                            *                                
    1424488 TTAAGTCGAGAAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCACA
         65 TTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACA

                   *               *            
    1424553 TCATTTACGACATAACTCAAGGCTAGAAGGGTTATC
        130 TCATTTAAG-CATAACTCAAGGCGAGAAGGGTTATC

              *               *                     *      *           *     
    1424589 TGTC-ACCAAAAGACCTTTGAGTTCGACTACGCTCAGCTCTAAGGCATATCATTTGCAGTATAAC
          1 TGCCAACC-AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAAC

                                                                             
    1424653 TTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACA
         65 TTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACA

                   *         *   *              
    1424718 TCATTTGGAGCATAACTTAAGTCGAGAAGGGTTATC
        130 TCATTT-AAGCATAACTCAAGGCGAGAAGGGTTATC

                             *                          *            *       
    1424754 TGCCAACCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGTACATCATTTGCAACATAACT
          1 TGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACT

            *   * *           *               *       *  *   *       *       
    1424819 CAAGGCAAGAAGGGCTATTTGCCAACCAAAGACCTTCGAGTTTGACTACGCTCAGCTCCGA-GGC
         66 TAAGTCGAGAAGGGCTATCTG----CCAAAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGC

                      *      *  *   *         *    
    1424883 ACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATC
        127 ACATCATTT-AAGCATAACTCAAGGCGAGAAGGGTTATC

                            
    1424922 TGCCAACCAAAGACCT
          1 TGCCAACCAAAGACCT

    1424938 GACGATTTGA


Statistics
Matches: 470,  Mismatches: 36, Indels: 13
        0.91            0.07        0.03

Matches are distributed among these distances:
 164    4  0.01
 165  376  0.80
 166    4  0.01
 168   55  0.12
 169   31  0.07

ACGTcount: A:0.30, C:0.26, G:0.21, T:0.24


Consensus pattern (164 bp):   
TGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACT
TAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACAT
CATTTAAGCATAACTCAAGGCGAGAAGGGTTATC


Done.