Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007897.1 Hibiscus syriacus cultivar Beakdansim tig00110283_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 862109
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 2 of 4
Found at i:243884 original size:59 final size:58
Alignment explanation
Indices: 243793--243904 Score: 206
Period size: 59 Copynumber: 1.9 Consensus size: 58
243783 GTGAGACATA
243793 TCATTGGAAAACATCATCTATACCTATAAACAAGAATTTACTTATTTGTTTTTGTCAG
1 TCATTGGAAAACATCATCTATACCTATAAACAAGAATTTACTTATTTGTTTTTGTCAG
*
243851 TCATTGGAAAAGCATCATCTGTACCTATAAACAAGAATTTACTTATTTGTTTTT
1 TCATTGGAAAA-CATCATCTATACCTATAAACAAGAATTTACTTATTTGTTTTT
243905 TTTTCATTTT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
58 11 0.21
59 41 0.79
ACGTcount: A:0.34, C:0.15, G:0.11, T:0.40
Consensus pattern (58 bp):
TCATTGGAAAACATCATCTATACCTATAAACAAGAATTTACTTATTTGTTTTTGTCAG
Found at i:248040 original size:59 final size:57
Alignment explanation
Indices: 247927--248107 Score: 186
Period size: 59 Copynumber: 3.1 Consensus size: 57
247917 ATATATACAT
* * *
247927 ATAGTTTGGGATGAAATT-AGAATGTTTAAAAAGTTTGGGGATCAATTTATAATGAATGTC
1 ATAGTTTGGGATGAAATTGA-AAT-ATT-AAAAGTTT-GGGATTAATTTAAAATGAATGTC
* * *
247987 ATAGTTTGGTATGAAATTGAAATATTCAAAAGTTTGAGGATTAATTTAGAATG-ATAATC
1 ATAGTTTGGGATGAAATTGAAATATT-AAAAGTTTG-GGATTAATTTAAAATGAAT-GTC
* * *
248046 ATAGTTTAGGGATGAAATTGAAATATGTAAAAATTAGGGACTAATTTAAAATGAATGTC
1 ATAGTTT-GGGATGAAATTGAAATAT-TAAAAGTTTGGGATTAATTTAAAATGAATGTC
248105 ATA
1 ATA
248108 CTTTAAGGAT
Statistics
Matches: 103, Mismatches: 12, Indels: 13
0.80 0.09 0.10
Matches are distributed among these distances:
58 3 0.03
59 52 0.50
60 46 0.45
61 2 0.02
ACGTcount: A:0.41, C:0.03, G:0.20, T:0.35
Consensus pattern (57 bp):
ATAGTTTGGGATGAAATTGAAATATTAAAAGTTTGGGATTAATTTAAAATGAATGTC
Found at i:253666 original size:17 final size:17
Alignment explanation
Indices: 253640--253672 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
253630 TAATGGGACC
253640 ATAGAAACAC-ATAAAA
1 ATAGAAACACTATAAAA
253656 ATAGTAAACACTATAAA
1 ATAG-AAACACTATAAA
253673 CATCAAGCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 6 0.40
18 5 0.33
ACGTcount: A:0.64, C:0.12, G:0.06, T:0.18
Consensus pattern (17 bp):
ATAGAAACACTATAAAA
Found at i:258317 original size:2 final size:2
Alignment explanation
Indices: 258310--258373 Score: 128
Period size: 2 Copynumber: 32.0 Consensus size: 2
258300 CATAACACTA
258310 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
258352 AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT
258374 GGGGCTAGGA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 62 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:260048 original size:22 final size:23
Alignment explanation
Indices: 260004--260060 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 23
259994 TTATTTTTAG
* *
260004 TATTTTTTA-TTTAATTTTAAAA
1 TATTTTATATTTTAAATTTAAAA
*
260026 TATTTTATGTTTTAAATTT-AAA
1 TATTTTATATTTTAAATTTAAAA
260048 TATTTTATATTTT
1 TATTTTATATTTT
260061 TTAAAAAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 22 0.73
23 8 0.27
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (23 bp):
TATTTTATATTTTAAATTTAAAA
Found at i:263036 original size:3 final size:3
Alignment explanation
Indices: 263028--263059 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
263018 CAGAAATGGC
263028 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
263060 GTGAAGAACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.34, T:0.31
Consensus pattern (3 bp):
GAT
Found at i:282754 original size:2 final size:2
Alignment explanation
Indices: 282747--282773 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
282737 TTATTTTTAT
282747 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
282774 TAATGCTAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:297565 original size:31 final size:31
Alignment explanation
Indices: 297530--297596 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
297520 TCCCTTGAAT
* *
297530 ATTTTAGTCCGTTTTATTA-CTTAAACTATTA
1 ATTTTAGTCCATTTTAGTATC-TAAACTATTA
* *
297561 ATTTTGGTCCATTTTAGTATCTAAACTTTTA
1 ATTTTAGTCCATTTTAGTATCTAAACTATTA
297592 ATTTT
1 ATTTT
297597 TTAGAACCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
31 30 0.97
32 1 0.03
ACGTcount: A:0.27, C:0.12, G:0.07, T:0.54
Consensus pattern (31 bp):
ATTTTAGTCCATTTTAGTATCTAAACTATTA
Found at i:316450 original size:18 final size:19
Alignment explanation
Indices: 316427--316468 Score: 59
Period size: 21 Copynumber: 2.2 Consensus size: 19
316417 TACGATCAAT
316427 CGAA-GGCTTCGAATTAAG
1 CGAAGGGCTTCGAATTAAG
316445 CGAAGGCGGCTTCGAATTAAG
1 CGAA-G-GGCTTCGAATTAAG
316466 CGA
1 CGA
316469 TGATCGCAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 4 0.19
21 17 0.81
ACGTcount: A:0.31, C:0.19, G:0.31, T:0.19
Consensus pattern (19 bp):
CGAAGGGCTTCGAATTAAG
Found at i:317691 original size:21 final size:21
Alignment explanation
Indices: 317667--317707 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
317657 ATTTTAATAT
317667 GATAATTCACA-ATATTGATGC
1 GATAATTCA-AGATATTGATGC
*
317688 GATAATTTAAGATATTGATG
1 GATAATTCAAGATATTGATG
317708 TGACAATCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.39, C:0.07, G:0.17, T:0.37
Consensus pattern (21 bp):
GATAATTCAAGATATTGATGC
Found at i:317977 original size:20 final size:19
Alignment explanation
Indices: 317920--317977 Score: 53
Period size: 21 Copynumber: 2.8 Consensus size: 19
317910 AAAAAATTAA
* *
317920 ATTATTAAAAATTTGAATCT
1 ATTATTAAAAA-TTAAAACT
*
317940 ATATATTAAAATAATAAAACT
1 AT-TATTAAAA-ATTAAAACT
317961 ATTATTAAAAAGTTAAA
1 ATTATTAAAAA-TTAAA
317978 CAATAAATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
19 1 0.03
20 14 0.45
21 15 0.48
22 1 0.03
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.38
Consensus pattern (19 bp):
ATTATTAAAAATTAAAACT
Found at i:318158 original size:25 final size:26
Alignment explanation
Indices: 318120--318187 Score: 95
Period size: 25 Copynumber: 2.7 Consensus size: 26
318110 TATTTTTACT
* *
318120 AGATTAATCAAAACTTACAGAATTTA
1 AGATTAGTCAAAACTTACAAAATTTA
*
318146 A-ATTAGTCGAAACTTA-AAAATTTA
1 AGATTAGTCAAAACTTACAAAATTTA
318170 AGATTAGTCAAAACTTAC
1 AGATTAGTCAAAACTTAC
318188 TATATTTTCT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
24 8 0.22
25 27 0.75
26 1 0.03
ACGTcount: A:0.49, C:0.12, G:0.09, T:0.31
Consensus pattern (26 bp):
AGATTAGTCAAAACTTACAAAATTTA
Found at i:320780 original size:10 final size:10
Alignment explanation
Indices: 320765--320803 Score: 51
Period size: 10 Copynumber: 3.6 Consensus size: 10
320755 ATAATCTAAG
320765 AATATAATTA
1 AATATAATTA
320775 AATATATTATTA
1 AATATA--ATTA
320787 TAATATAATTA
1 -AATATAATTA
320798 AATATA
1 AATATA
320804 TTATTATAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
10 12 0.46
11 4 0.15
12 4 0.15
13 6 0.23
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (10 bp):
AATATAATTA
Found at i:320791 original size:23 final size:23
Alignment explanation
Indices: 320765--320814 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
320755 ATAATCTAAG
320765 AATATAATTAAATATATTATTAT
1 AATATAATTAAATATATTATTAT
320788 AATATAATTAAATATATTATTAT
1 AATATAATTAAATATATTATTAT
320811 AATA
1 AATA
320815 CTAAAAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (23 bp):
AATATAATTAAATATATTATTAT
Found at i:320830 original size:26 final size:23
Alignment explanation
Indices: 320765--320834 Score: 88
Period size: 23 Copynumber: 3.0 Consensus size: 23
320755 ATAATCTAAG
*
320765 AATATAATTAAATATATTATTAT
1 AATATAATAAAATATATTATTAT
*
320788 AATATAATTAAATATATTATTAT
1 AATATAATAAAATATATTATTAT
* *
320811 AATACTAA-AAAATACAATATTAT
1 AATA-TAATAAAATATATTATTAT
320834 A
1 A
320835 TTATTAAATT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
23 40 0.93
24 3 0.07
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (23 bp):
AATATAATAAAATATATTATTAT
Found at i:320866 original size:14 final size:15
Alignment explanation
Indices: 320847--320877 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
320837 ATTAAATTTG
320847 TTAATAAAT-ATATT
1 TTAATAAATAATATT
320861 TTAATAAATAATATT
1 TTAATAAATAATATT
320876 TT
1 TT
320878 TATTAAAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.56
15 7 0.44
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TTAATAAATAATATT
Found at i:320878 original size:16 final size:15
Alignment explanation
Indices: 320842--320884 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
320832 ATATTATTAA
320842 ATTTGTTAATAAATAT
1 ATTT-TTAATAAATAT
320858 A-TTTTAATAAATAAT
1 ATTTTTAATAAAT-AT
*
320873 ATTTTTATTAAA
1 ATTTTTAATAAA
320885 ATGATACTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
14 9 0.38
15 5 0.21
16 10 0.42
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (15 bp):
ATTTTTAATAAATAT
Found at i:322244 original size:16 final size:16
Alignment explanation
Indices: 322223--322260 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
322213 ATGAAAGAGA
322223 TTAAAGTAGAGAATTG
1 TTAAAGTAGAGAATTG
322239 TTAAAGTAGAGAATTG
1 TTAAAGTAGAGAATTG
*
322255 TGAAAG
1 TTAAAG
322261 AAATCGATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.45, C:0.00, G:0.26, T:0.29
Consensus pattern (16 bp):
TTAAAGTAGAGAATTG
Found at i:323005 original size:26 final size:26
Alignment explanation
Indices: 322971--323022 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
322961 TTTTTTTTCT
322971 AAAAAAAA-CTTCTAGTTGAAT-GAGA
1 AAAAAAAACCTTCTAGTT-AATAGAGA
322996 AAAACAAAACCTTCTAGTTAATAGAGA
1 AAAA-AAAACCTTCTAGTTAATAGAGA
323023 GTATAAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 4 0.17
26 7 0.29
27 13 0.54
ACGTcount: A:0.52, C:0.12, G:0.13, T:0.23
Consensus pattern (26 bp):
AAAAAAAACCTTCTAGTTAATAGAGA
Found at i:323091 original size:13 final size:14
Alignment explanation
Indices: 323073--323106 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
323063 GAAGATTTTT
323073 TAAAAATATTA-AA
1 TAAAAATATTAGAA
*
323086 TAAAAATATTAGAT
1 TAAAAATATTAGAA
323100 TAAAAAT
1 TAAAAAT
323107 TAGATTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (14 bp):
TAAAAATATTAGAA
Found at i:323108 original size:12 final size:13
Alignment explanation
Indices: 323075--323112 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
323065 AGATTTTTTA
* *
323075 AAAATATTAAATA
1 AAAATATTAGATT
323088 AAAATATTAGATT
1 AAAATATTAGATT
323101 AAAA-ATTAGATT
1 AAAATATTAGATT
323113 TTTTTATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 8 0.35
13 15 0.65
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (13 bp):
AAAATATTAGATT
Found at i:323294 original size:2 final size:2
Alignment explanation
Indices: 323287--323311 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
323277 ACTCTAACTT
323287 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
323312 GTATGCATTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:325280 original size:14 final size:16
Alignment explanation
Indices: 325251--325282 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
325241 CGTTCGTGAA
325251 CGTTCGATTATATGTT
1 CGTTCGATTATATGTT
325267 CGTTC-ATT-TATGTT
1 CGTTCGATTATATGTT
325281 CG
1 CG
325283 AACAGATGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 3 0.19
16 5 0.31
ACGTcount: A:0.16, C:0.16, G:0.19, T:0.50
Consensus pattern (16 bp):
CGTTCGATTATATGTT
Found at i:340008 original size:20 final size:21
Alignment explanation
Indices: 339979--340019 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
339969 TTATAAAAAT
* *
339979 ATTTTTAAATTAT-TTATTTA
1 ATTTTAAAATCATATTATTTA
339999 ATTTTAAAATCATATTATTTA
1 ATTTTAAAATCATATTATTTA
340020 TTTATTTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (21 bp):
ATTTTAAAATCATATTATTTA
Found at i:345461 original size:24 final size:25
Alignment explanation
Indices: 345433--345482 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 25
345423 TAAAATCTAA
345433 TTAATAAGAAA-ATAAT-ATATATTT
1 TTAATAAGAAAGA-AATAATATATTT
*
345457 TTAATAATAAAGAAATAATATATTT
1 TTAATAAGAAAGAAATAATATATTT
345482 T
1 T
345483 AAGAAATTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 13 0.57
25 10 0.43
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (25 bp):
TTAATAAGAAAGAAATAATATATTT
Found at i:359371 original size:3 final size:3
Alignment explanation
Indices: 359363--359408 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
359353 AATGGTATAG
359363 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
359409 AGTTAAAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:360162 original size:2 final size:2
Alignment explanation
Indices: 360155--360179 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
360145 AGTGTGATAC
360155 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
360180 ATTTAAGTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:362228 original size:59 final size:59
Alignment explanation
Indices: 362123--362249 Score: 161
Period size: 59 Copynumber: 2.1 Consensus size: 59
362113 AGATTGTCAT
* *
362123 TTTATAACTTTTAATAATAAAGAAACTCAACAAAATAACATCTTATAAT-TAAAATATCA
1 TTTATAACTTTTAATAATAAAGAAACTCAACAAAATAACA-CTTATAATAAAAAAAATCA
*
362182 TTTATAACTTTTAATAATAAA-AAATCTCAACAAAA-ATACGCATTATAATAAAAAAAAATCA
1 TTTATAACTTTTAATAATAAAGAAA-CTCAACAAAATA-ACAC-TTATAAT-AAAAAAAATCA
362243 TTTATAA
1 TTTATAA
362250 TCAACAAAAA
Statistics
Matches: 60, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
58 5 0.08
59 40 0.67
61 15 0.25
ACGTcount: A:0.54, C:0.11, G:0.02, T:0.33
Consensus pattern (59 bp):
TTTATAACTTTTAATAATAAAGAAACTCAACAAAATAACACTTATAATAAAAAAAATCA
Found at i:363211 original size:15 final size:16
Alignment explanation
Indices: 363193--363229 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
363183 TATTTTAGAC
363193 AATTTTATA-AATTAA
1 AATTTTATATAATTAA
363208 AA-TTTATATAATTAA
1 AATTTTATATAATTAA
363223 AATTTTA
1 AATTTTA
363230 ATATTATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 6 0.30
15 10 0.50
16 4 0.20
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
AATTTTATATAATTAA
Found at i:363518 original size:30 final size:31
Alignment explanation
Indices: 363421--363524 Score: 79
Period size: 30 Copynumber: 3.2 Consensus size: 31
363411 TAATTTATTA
* *
363421 ATAATTAATATAAAAATCATAAAA-TAATCACTTT
1 ATAATTAAAATAAAAATTA-AAAATTAA--A-TTT
*
363455 ATAATGTAATAAATAAAGATTAAAAATTAAATTT
1 ATAAT-T-A-AAATAAAAATTAAAAATTAAATTT
*
363489 -TAATTAAAATAAAAATT-AAATTTATAATTT
1 ATAATTAAAATAAAAATTAAAAATTA-AATTT
363519 ATAATT
1 ATAATT
363525 CGTATTGAAA
Statistics
Matches: 59, Mismatches: 5, Indels: 15
0.75 0.06 0.19
Matches are distributed among these distances:
29 6 0.10
30 15 0.25
31 6 0.10
32 1 0.02
33 4 0.07
34 8 0.14
35 2 0.03
36 5 0.08
37 12 0.20
ACGTcount: A:0.57, C:0.03, G:0.02, T:0.38
Consensus pattern (31 bp):
ATAATTAAAATAAAAATTAAAAATTAAATTT
Found at i:363778 original size:21 final size:21
Alignment explanation
Indices: 363748--363802 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
363738 GATTTACATA
*
363748 TTCGCATTGCGATAGTCCAAG
1 TTCGCGTTGCGATAGTCCAAG
*
363769 TTCGCGTTGCGATAGTCGAAG
1 TTCGCGTTGCGATAGTCCAAG
363790 TTCGCGTTGCGAT
1 TTCGCGTTGCGAT
363803 TTTAATGAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.18, C:0.22, G:0.29, T:0.31
Consensus pattern (21 bp):
TTCGCGTTGCGATAGTCCAAG
Found at i:363846 original size:21 final size:21
Alignment explanation
Indices: 363820--364017 Score: 210
Period size: 21 Copynumber: 9.6 Consensus size: 21
363810 AATTTGGAAA
363820 ATCGCAACGCGAACTTCGACT
1 ATCGCAACGCGAACTTCGACT
363841 ATCGCAACGCGAACTTCGACT
1 ATCGCAACGCGAACTTCGACT
* * *
363862 ATCGCAA--CGAATTTGGAAT
1 ATCGCAACGCGAACTTCGACT
363881 AAATCGCAACGCGAACTTCGACT
1 --ATCGCAACGCGAACTTCGACT
* * **
363904 ATCGCAA--CGAATTTGGAAA
1 ATCGCAACGCGAACTTCGACT
363923 ATCGCAACGCGAACTTCGACT
1 ATCGCAACGCGAACTTCGACT
* * **
363944 ATCGCAA--CGAATTTAGAAA
1 ATCGCAACGCGAACTTCGACT
*
363963 ATCGCAACGCGAACTTGGACT
1 ATCGCAACGCGAACTTCGACT
*
363984 ATCGCAACGCGAACTTGGACT
1 ATCGCAACGCGAACTTCGACT
*
364005 ATCGCAATGCGAA
1 ATCGCAACGCGAA
364018 TATGTAAATC
Statistics
Matches: 146, Mismatches: 23, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
19 39 0.27
21 98 0.67
23 9 0.06
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.20
Consensus pattern (21 bp):
ATCGCAACGCGAACTTCGACT
Found at i:363936 original size:40 final size:40
Alignment explanation
Indices: 363841--363992 Score: 268
Period size: 40 Copynumber: 3.8 Consensus size: 40
363831 AACTTCGACT
363841 ATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAATAA
1 ATCGCAACGCGAACTTCGACTATCGCAACGAATTTGG-A-AA
363883 ATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAAA
1 ATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAAA
*
363923 ATCGCAACGCGAACTTCGACTATCGCAACGAATTTAGAAA
1 ATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAAA
*
363963 ATCGCAACGCGAACTTGGACTATCGCAACG
1 ATCGCAACGCGAACTTCGACTATCGCAACG
363993 CGAACTTGGA
Statistics
Matches: 108, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
40 70 0.65
41 1 0.01
42 37 0.34
ACGTcount: A:0.35, C:0.26, G:0.20, T:0.20
Consensus pattern (40 bp):
ATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAAA
Found at i:364055 original size:21 final size:22
Alignment explanation
Indices: 364026--364080 Score: 78
Period size: 21 Copynumber: 2.6 Consensus size: 22
364016 AATATGTAAA
*
364026 TCGCATTGCGAAT-GTCCAAGT
1 TCGCGTTGCGAATAGTCCAAGT
*
364047 TCGCGTTGCG-ATAGTCGAAGT
1 TCGCGTTGCGAATAGTCCAAGT
364068 TCGCGTTGCGAAT
1 TCGCGTTGCGAAT
364081 TATCGATCGC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
20 2 0.07
21 26 0.87
22 2 0.07
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (22 bp):
TCGCGTTGCGAATAGTCCAAGT
Found at i:366756 original size:27 final size:27
Alignment explanation
Indices: 366718--366783 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 27
366708 CTTAAGGAGT
* *
366718 GGTCCTTAGGGATAAATACAGTACATA
1 GGTCCTTCGGGATAAATACAATACATA
366745 GGTCCTTCGGGATAAATACAATACATA
1 GGTCCTTCGGGATAAATACAATACATA
*
366772 GGTCATTCGGGA
1 GGTCCTTCGGGA
366784 CAAAATTTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (27 bp):
GGTCCTTCGGGATAAATACAATACATA
Found at i:367392 original size:32 final size:32
Alignment explanation
Indices: 367332--367405 Score: 103
Period size: 32 Copynumber: 2.3 Consensus size: 32
367322 TTACAAAAGT
* * *
367332 CACTGTAGTAGTATTGTAGCAATACATCGATG
1 CACTGTAGCAGTACTGTAACAATACATCGATG
* *
367364 CATTGTAGCAGTACTGTAACAATGCATCGATG
1 CACTGTAGCAGTACTGTAACAATACATCGATG
367396 CACTGTAGCA
1 CACTGTAGCA
367406 CTGTTCATGG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (32 bp):
CACTGTAGCAGTACTGTAACAATACATCGATG
Found at i:368857 original size:23 final size:22
Alignment explanation
Indices: 368831--368886 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
368821 TAATTTACTT
* *
368831 AAATTAATTCTTATTTTTAATAA
1 AAATTAATT-TAAATTTTAATAA
*
368854 AAATTATAATTAAATTTTAATAA
1 AAATTA-ATTTAAATTTTAATAA
*
368877 ATATTAATTT
1 AAATTAATTT
368887 TAAACAAATT
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
22 3 0.11
23 22 0.81
24 2 0.07
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (22 bp):
AAATTAATTTAAATTTTAATAA
Found at i:369002 original size:37 final size:37
Alignment explanation
Indices: 368952--369026 Score: 116
Period size: 37 Copynumber: 2.0 Consensus size: 37
368942 GTGTGTTTCA
* *
368952 ATACATTATTTTAGT-AGTGTGTTATGGTATGCGACAT
1 ATACATTACTTTAGTGA-TGTGTTATGGTATGCAACAT
368989 ATACATTACTTTAGTGATGTGTTATGGTATGCAACAT
1 ATACATTACTTTAGTGATGTGTTATGGTATGCAACAT
369026 A
1 A
369027 CATTGTATAC
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
37 34 0.97
38 1 0.03
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.41
Consensus pattern (37 bp):
ATACATTACTTTAGTGATGTGTTATGGTATGCAACAT
Found at i:369597 original size:17 final size:18
Alignment explanation
Indices: 369560--369600 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
369550 ATATTACGTA
*
369560 TTTAATTTATTTAAGTAT
1 TTTACTTTATTTAAGTAT
369578 TTTACTTTATTTAA-TAT
1 TTTACTTTATTTAAGTAT
369595 TTTACT
1 TTTACT
369601 AATATAATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.63
Consensus pattern (18 bp):
TTTACTTTATTTAAGTAT
Found at i:369856 original size:111 final size:111
Alignment explanation
Indices: 369662--369883 Score: 390
Period size: 111 Copynumber: 2.0 Consensus size: 111
369652 TGGAAATCAT
*
369662 ATATCTCTACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
1 ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
* * *
369727 TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
66 TAATTAGTTGATTTATTTAATACATAATTATTAGATTAAAAATTAA
* *
369773 ATATCTCGACACTTTGTTGATACGGTAACATTTTAACGTTTTTATTTAATTTAAATTATTAGTAA
1 ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
369838 TAATTAGTTGATTTATTTAATACATAATTATTAGATTAAAAATTAA
66 TAATTAGTTGATTTATTTAATACATAATTATTAGATTAAAAATTAA
369884 TTTTTGTAAT
Statistics
Matches: 105, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
111 105 1.00
ACGTcount: A:0.37, C:0.08, G:0.10, T:0.45
Consensus pattern (111 bp):
ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
TAATTAGTTGATTTATTTAATACATAATTATTAGATTAAAAATTAA
Found at i:373784 original size:17 final size:18
Alignment explanation
Indices: 373757--373793 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
373747 CCATGATTTT
*
373757 ATAATTTTTTATTAAAAA
1 ATAATTTTTTAATAAAAA
373775 ATAA-TTTTTAATAAAAA
1 ATAATTTTTTAATAAAAA
373792 AT
1 AT
373794 TAAAGAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
ATAATTTTTTAATAAAAA
Found at i:387155 original size:13 final size:13
Alignment explanation
Indices: 387137--387191 Score: 51
Period size: 13 Copynumber: 4.4 Consensus size: 13
387127 TTATAATAAT
*
387137 AATTATTATTTTA
1 AATTATTATATTA
*
387150 AATTATTAAATTA
1 AATTATTATATTA
* *
387163 AATTAATA-ATTC
1 AATTATTATATTA
*
387175 AATT-TTATTTTA
1 AATTATTATATTA
387187 AATTA
1 AATTA
387192 AATATCATTA
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
11 2 0.06
12 13 0.39
13 18 0.55
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (13 bp):
AATTATTATATTA
Found at i:387211 original size:20 final size:19
Alignment explanation
Indices: 387180--387235 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
387170 AATTCAATTT
* * *
387180 TATTTTAAATTAAATATCAT
1 TATTTTATATTAAAAAT-AA
*
387200 TATTTTTTATTATAAAATAA
1 TATTTTATATTA-AAAATAA
387220 TATTTTATATTAAAAA
1 TATTTTATATTAAAAA
387236 ATAGATGAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
19 4 0.13
20 22 0.73
21 4 0.13
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
TATTTTATATTAAAAATAA
Found at i:387236 original size:20 final size:20
Alignment explanation
Indices: 387200--387238 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
387190 TAAATATCAT
* *
387200 TATTTTTTATTATAAAATAA
1 TATTTTATATTAAAAAATAA
387220 TATTTTATATTAAAAAATA
1 TATTTTATATTAAAAAATA
387239 GATGAAAAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
TATTTTATATTAAAAAATAA
Found at i:389982 original size:2 final size:2
Alignment explanation
Indices: 389975--390010 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
389965 GGTATAAACG
389975 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
390011 GTGTGTGTGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:390363 original size:32 final size:32
Alignment explanation
Indices: 390322--390392 Score: 99
Period size: 32 Copynumber: 2.2 Consensus size: 32
390312 GAGTCGAGGG
*
390322 TTACCTATGTCTTTC-GAGACATATGGACAGGA
1 TTACCTATGTCATTCGGAGACATATGGACA-GA
* *
390354 TTACCTATGTCATTCGGGGACATATGGACAGT
1 TTACCTATGTCATTCGGAGACATATGGACAGA
390386 TTACCTA
1 TTACCTA
390393 GGTTCTTCGG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
32 22 0.63
33 13 0.37
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (32 bp):
TTACCTATGTCATTCGGAGACATATGGACAGA
Found at i:390402 original size:32 final size:33
Alignment explanation
Indices: 390322--390403 Score: 89
Period size: 32 Copynumber: 2.5 Consensus size: 33
390312 GAGTCGAGGG
* * *
390322 TTACCTATGTCTTTC-GAGACATATGGACAGGA
1 TTACCTAGGTCATTCGGGGACATATGGACAGGA
* *
390354 TTACCTATGTCATTCGGGGACATATGGACA-GT
1 TTACCTAGGTCATTCGGGGACATATGGACAGGA
390386 TTACCTAGGTTC-TTCGGG
1 TTACCTAGG-TCATTCGGG
390404 ATCTATGGGC
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
32 29 0.66
33 15 0.34
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (33 bp):
TTACCTAGGTCATTCGGGGACATATGGACAGGA
Found at i:391583 original size:43 final size:43
Alignment explanation
Indices: 391500--391583 Score: 100
Period size: 43 Copynumber: 2.0 Consensus size: 43
391490 CTAGGTGAAG
* *
391500 ATGATATATGTGATACATGAGAATATGCTATGAGCAATATGAT
1 ATGATATATGTGATACATGAGAATATGATATGAACAATATGAT
* *
391543 ATGATCTATGTGA-ACATATGAGAA-ATGATATGAACTATATG
1 ATGATATATGTGATAC--ATGAGAATATGATATGAACAATATG
391584 TGCTACATGA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
42 2 0.06
43 26 0.74
44 7 0.20
ACGTcount: A:0.40, C:0.07, G:0.20, T:0.32
Consensus pattern (43 bp):
ATGATATATGTGATACATGAGAATATGATATGAACAATATGAT
Found at i:392145 original size:2 final size:2
Alignment explanation
Indices: 392138--392190 Score: 79
Period size: 2 Copynumber: 26.0 Consensus size: 2
392128 ACATACAAAC
*
392138 AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT CAT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT
*
392181 AT AT AC AT AT
1 AT AT AT AT AT
392191 TGTTTCACAA
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
2 44 0.96
3 2 0.04
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:392574 original size:23 final size:23
Alignment explanation
Indices: 392538--392601 Score: 101
Period size: 23 Copynumber: 2.8 Consensus size: 23
392528 CAGCTTGTAT
392538 AAATGCACCGAAGTGCCACGTAG
1 AAATGCACCGAAGTGCCACGTAG
* * *
392561 AATTGCACCTAAGTGCCGCGTAG
1 AAATGCACCGAAGTGCCACGTAG
392584 AAATGCACCGAAGTGCCA
1 AAATGCACCGAAGTGCCA
392602 TATAAGATGT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.33, C:0.27, G:0.25, T:0.16
Consensus pattern (23 bp):
AAATGCACCGAAGTGCCACGTAG
Found at i:394220 original size:24 final size:20
Alignment explanation
Indices: 394167--394224 Score: 71
Period size: 20 Copynumber: 2.7 Consensus size: 20
394157 TCCCCTTTGA
*
394167 AGTGCATCGATACATTCTAC
1 AGTGCATCGATGCATTCTAC
394187 AGTGCATCGATGCATTCTTTAAC
1 AGTGCATCGATGCATTC--T-AC
394210 ATGTGCATCGATGCA
1 A-GTGCATCGATGCA
394225 CTACTCATGC
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
20 16 0.48
22 1 0.03
23 3 0.09
24 13 0.39
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (20 bp):
AGTGCATCGATGCATTCTAC
Found at i:400651 original size:2 final size:2
Alignment explanation
Indices: 400644--400672 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
400634 GTACTTCAAC
400644 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
400673 ATTATTATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:401484 original size:24 final size:24
Alignment explanation
Indices: 401395--401484 Score: 83
Period size: 24 Copynumber: 3.8 Consensus size: 24
401385 GAAGAACCGA
*
401395 ATAATCGAACTTATAAACGAGTC-
1 ATAAACGAACTTATAAACGAGTCG
* ** *
401418 AGTAAATGAGTTTATAAACAAGTCG
1 A-TAAACGAACTTATAAACGAGTCG
* * *
401443 ATAAACAAATTTAAAAACGAGTCG
1 ATAAACGAACTTATAAACGAGTCG
*
401467 ATAAACGAACTTGTAAAC
1 ATAAACGAACTTATAAAC
401485 AAGCTTGTTT
Statistics
Matches: 51, Mismatches: 14, Indels: 3
0.75 0.21 0.04
Matches are distributed among these distances:
23 1 0.02
24 49 0.96
25 1 0.02
ACGTcount: A:0.48, C:0.13, G:0.14, T:0.24
Consensus pattern (24 bp):
ATAAACGAACTTATAAACGAGTCG
Found at i:403786 original size:17 final size:16
Alignment explanation
Indices: 403765--403795 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
403755 CTTCTAAATT
*
403765 TTTTTTGAGTTCAAGC
1 TTTTTTGAATTCAAGC
403781 TTTTTTGAATTCAAG
1 TTTTTTGAATTCAAG
403796 TTTCAATATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.10, G:0.16, T:0.52
Consensus pattern (16 bp):
TTTTTTGAATTCAAGC
Found at i:405778 original size:3 final size:3
Alignment explanation
Indices: 405770--405798 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
405760 AATAGTATTA
405770 AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
405799 ACCTTCAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:412086 original size:17 final size:16
Alignment explanation
Indices: 412046--412106 Score: 50
Period size: 20 Copynumber: 3.4 Consensus size: 16
412036 CTCACTTTAT
412046 TATTATTTTTATTATCTAA
1 TATTATTTTTA-TAT-T-A
412065 TTATTATTTTTATAATTA
1 -TATTATTTTTAT-ATTA
* *
412083 TATTTAATTTTATATTT
1 TA-TTATTTTTATATTA
412100 TATTATT
1 TATTATT
412107 GATTTATTCT
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
16 4 0.11
17 7 0.19
18 10 0.28
19 2 0.06
20 13 0.36
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (16 bp):
TATTATTTTTATATTA
Found at i:413758 original size:28 final size:28
Alignment explanation
Indices: 413710--413764 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
413700 CCACCATTGC
* * *
413710 TTTCAAGTATTGTCTCGATAACATAATG
1 TTTCAAGTATAGTCTCAATAAAATAATG
413738 TTTCAAGTACTAG-CTCAATAAAATAAT
1 TTTCAAGTA-TAGTCTCAATAAAATAAT
413765 ATAAATGGAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 21 0.91
29 2 0.09
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (28 bp):
TTTCAAGTATAGTCTCAATAAAATAATG
Found at i:414272 original size:42 final size:41
Alignment explanation
Indices: 414225--414339 Score: 185
Period size: 42 Copynumber: 2.8 Consensus size: 41
414215 CCCGAAATCT
* *
414225 CGTGTTTGTTTCATGTAATCCGTTTTTCGGAAAATGTTTTCC
1 CGTGTTTGTTTCACGTAATTCGTTTTTCGGAAAATGTTTT-C
*
414267 CGTGTTTGTTTCACGTAATTCGTTTTTCGAAAAATGTTTTC
1 CGTGTTTGTTTCACGTAATTCGTTTTTCGGAAAATGTTTTC
*
414308 CGTGTTTGTTTCACGTAATTCGTTTTCCGGAA
1 CGTGTTTGTTTCACGTAATTCGTTTTTCGGAA
414340 CGTAATTCAT
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
41 31 0.46
42 37 0.54
ACGTcount: A:0.17, C:0.17, G:0.19, T:0.47
Consensus pattern (41 bp):
CGTGTTTGTTTCACGTAATTCGTTTTTCGGAAAATGTTTTC
Found at i:414571 original size:29 final size:28
Alignment explanation
Indices: 414538--414705 Score: 104
Period size: 28 Copynumber: 6.0 Consensus size: 28
414528 AAATATTTAA
414538 AATATATTTATTAATATTTATAATAATAT
1 AATATATTTATT-ATATTTATAATAATAT
*
414567 AATATTATATT-TT-TAGTT-TAATAATAT
1 AATA-TAT-TTATTATATTTATAATAATAT
* * * *
414594 AATAAATTATATTATAATAAT-ATAAGAT
1 AATATATT-TATTATATTTATAATAATAT
* *
414622 ATTATATTT-TTTTATTT-TAATAATAT
1 AATATATTTATTATATTTATAATAATAT
*
414648 -ATAATAATTTTTTATATATT-TAATAATGAAT
1 AAT-AT-ATTTATTATAT-TTATAATAAT--AT
414679 AATATTATTTA-TATATTTA-AATAATAT
1 AATA-TATTTATTATATTTATAATAATAT
414706 TTTAGTAAAG
Statistics
Matches: 109, Mismatches: 14, Indels: 34
0.69 0.09 0.22
Matches are distributed among these distances:
25 3 0.03
26 16 0.15
27 22 0.20
28 24 0.22
29 22 0.20
30 10 0.09
31 9 0.08
32 3 0.03
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (28 bp):
AATATATTTATTATATTTATAATAATAT
Found at i:414625 original size:23 final size:23
Alignment explanation
Indices: 414585--414629 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
414575 ATTTTTAGTT
*
414585 TAATAATATAATAAATTATATTA
1 TAATAATATAAGAAATTATATTA
*
414608 TAATAATATAAGATATTATATT
1 TAATAATATAAGAAATTATATT
414630 TTTTTATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (23 bp):
TAATAATATAAGAAATTATATTA
Found at i:415173 original size:17 final size:17
Alignment explanation
Indices: 415141--415174 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
415131 ATTAAAAAAA
**
415141 TAAATTAAATGTTTTTT
1 TAAATTAAATAATTTTT
415158 TAAATTAAATAATTTTT
1 TAAATTAAATAATTTTT
415175 GAGTTCTCTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (17 bp):
TAAATTAAATAATTTTT
Found at i:417419 original size:27 final size:27
Alignment explanation
Indices: 417385--417442 Score: 109
Period size: 27 Copynumber: 2.2 Consensus size: 27
417375 AAATACGCAT
417385 TAAG-TAAGAATTACTTATTAAACACA
1 TAAGATAAGAATTACTTATTAAACACA
417411 TAAGATAAGAATTACTTATTAAACACA
1 TAAGATAAGAATTACTTATTAAACACA
417438 TAAGA
1 TAAGA
417443 CGATCGAGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 4 0.13
27 27 0.87
ACGTcount: A:0.52, C:0.10, G:0.09, T:0.29
Consensus pattern (27 bp):
TAAGATAAGAATTACTTATTAAACACA
Found at i:434287 original size:17 final size:18
Alignment explanation
Indices: 434231--434291 Score: 65
Period size: 18 Copynumber: 3.4 Consensus size: 18
434221 GAAACCGGTT
434231 TTTTCGGTTCGGTTCGGG
1 TTTTCGGTTCGGTTCGGG
434249 TTTT---TTAACGGTTCGGG
1 TTTTCGGTT--CGGTTCGGG
*
434266 TTTTTCGGTTCGGTTCGGT
1 -TTTTCGGTTCGGTTCGGG
434285 TTTTCGG
1 TTTTCGG
434292 GTTTTCAATG
Statistics
Matches: 36, Mismatches: 1, Indels: 12
0.73 0.02 0.24
Matches are distributed among these distances:
15 2 0.06
17 9 0.25
18 15 0.42
19 8 0.22
21 2 0.06
ACGTcount: A:0.03, C:0.15, G:0.33, T:0.49
Consensus pattern (18 bp):
TTTTCGGTTCGGTTCGGG
Found at i:434294 original size:19 final size:19
Alignment explanation
Indices: 434230--434291 Score: 78
Period size: 17 Copynumber: 3.4 Consensus size: 19
434220 CGAAACCGGT
434230 TTTTTCGGTTCGGTTCGGG
1 TTTTTCGGTTCGGTTCGGG
*
434249 TTTTT---TAACGGTTCGGG
1 TTTTTCGGT-TCGGTTCGGG
434266 TTTTTCGGTTCGGTTC-GG
1 TTTTTCGGTTCGGTTCGGG
434284 TTTTTCGG
1 TTTTTCGG
434292 GTTTTCAATG
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
16 1 0.03
17 14 0.38
18 10 0.27
19 11 0.30
20 1 0.03
ACGTcount: A:0.03, C:0.15, G:0.32, T:0.50
Consensus pattern (19 bp):
TTTTTCGGTTCGGTTCGGG
Found at i:437932 original size:60 final size:60
Alignment explanation
Indices: 437795--437936 Score: 144
Period size: 60 Copynumber: 2.4 Consensus size: 60
437785 TTGAAACATA
* * * * *
437795 ATGA-ATAGTCGAGTGACAATTTTGTAACTTTTAATAATCGAGAGACTCAACAAAATAAT
1 ATGATATAGTCAAGGGACCATTTTGTAACTGTTAATAATCGAAAGACTCAACAAAATAAT
** * * * * * *
437854 ATTTTATAATTAATGGACCATTTTGTAACTGTTAATAGTCGAAAGACTCAA-AATTATAGT
1 ATGATATAGTCAAGGGACCATTTTGTAACTGTTAATAATCGAAAGACTCAACAA-AATAAT
437914 ATGATATAGTCAAGGGACCATTT
1 ATGATATAGTCAAGGGACCATTT
437937 CTATACTTTA
Statistics
Matches: 63, Mismatches: 18, Indels: 3
0.75 0.21 0.04
Matches are distributed among these distances:
59 4 0.06
60 59 0.94
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.34
Consensus pattern (60 bp):
ATGATATAGTCAAGGGACCATTTTGTAACTGTTAATAATCGAAAGACTCAACAAAATAAT
Found at i:441338 original size:20 final size:20
Alignment explanation
Indices: 441313--441359 Score: 78
Period size: 19 Copynumber: 2.4 Consensus size: 20
441303 AACGCGATTT
441313 TGAAAAATGTGTTGCGATAG
1 TGAAAAATGTGTTGCGATAG
*
441333 T-TAAAATGTGTTGCGATAG
1 TGAAAAATGTGTTGCGATAG
441352 TGAAAAAT
1 TGAAAAAT
441360 CCAAAATAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.38, C:0.04, G:0.26, T:0.32
Consensus pattern (20 bp):
TGAAAAATGTGTTGCGATAG
Found at i:441806 original size:21 final size:21
Alignment explanation
Indices: 441781--441857 Score: 86
Period size: 21 Copynumber: 3.7 Consensus size: 21
441771 AATTTAGAAA
*
441781 ATCGCATTGCGATTTTGTATT
1 ATCGCGTTGCGATTTTGTATT
* **
441802 ATCGCGTTGCGA--TAGTCAGA
1 ATCGCGTTGCGATTTTGT-ATT
*
441822 ATCGCGTTGCGATTTTCTATT
1 ATCGCGTTGCGATTTTGTATT
441843 ATCGCGTTGCGATTT
1 ATCGCGTTGCGATTT
441858 ACATATTCGC
Statistics
Matches: 45, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
19 3 0.07
20 13 0.29
21 27 0.60
22 2 0.04
ACGTcount: A:0.18, C:0.18, G:0.23, T:0.40
Consensus pattern (21 bp):
ATCGCGTTGCGATTTTGTATT
Found at i:441827 original size:20 final size:20
Alignment explanation
Indices: 441802--441894 Score: 80
Period size: 20 Copynumber: 4.6 Consensus size: 20
441792 ATTTTGTATT
*
441802 ATCGCGTTGCGATAGTCAGA
1 ATCGCGTTGCGATAGTCATA
** *
441822 ATCGCGTTGCGATTTTCTATT
1 ATCGCGTTGCGATAGTC-ATA
*
441843 ATCGCGTTGCGAT-TTACATA
1 ATCGCGTTGCGATAGT-CATA
* * * *
441863 TTCGCATTGTGATAGTCAAA
1 ATCGCGTTGCGATAGTCATA
441883 ATCGCGTTGCGA
1 ATCGCGTTGCGA
441895 ATCTGGAAAC
Statistics
Matches: 57, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
20 41 0.72
21 16 0.28
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.34
Consensus pattern (20 bp):
ATCGCGTTGCGATAGTCATA
Found at i:441944 original size:19 final size:19
Alignment explanation
Indices: 441920--441956 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
441910 TGCGATACTG
*
441920 GAGATCGCGTTGCGATTTA
1 GAGATCGCATTGCGATTTA
*
441939 GAGATCGCATTGTGATTT
1 GAGATCGCATTGCGATTT
441957 TGTTGGTCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.22, C:0.14, G:0.30, T:0.35
Consensus pattern (19 bp):
GAGATCGCATTGCGATTTA
Found at i:442812 original size:18 final size:19
Alignment explanation
Indices: 442789--442825 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
442779 CCAGTAATCC
442789 TATTCCCA-GGTAATCTTT
1 TATTCCCACGGTAATCTTT
442807 TATTCCCACTGGTAATCTT
1 TATTCCCAC-GGTAATCTT
442826 ACATTCCGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.47
20 9 0.53
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.43
Consensus pattern (19 bp):
TATTCCCACGGTAATCTTT
Found at i:443771 original size:2 final size:2
Alignment explanation
Indices: 443764--443826 Score: 117
Period size: 2 Copynumber: 31.0 Consensus size: 2
443754 ATGGTGCATT
443764 TA TA TA TA GTA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
443807 TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA
443827 ACATGGACCT
Statistics
Matches: 60, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
2 58 0.97
3 2 0.03
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
TA
Found at i:451259 original size:60 final size:60
Alignment explanation
Indices: 451192--451329 Score: 179
Period size: 60 Copynumber: 2.3 Consensus size: 60
451182 AAAGTCGGGT
*
451192 GATCATTTTATAACTTTTAATAGTCGAGGGACTCAACAAAGCAGCACCCTATAGTCGAAG
1 GATCATTTTATAACTTTTAATAGTCGAGGGACTCAACAAAGCAACACCCTATAGTCGAAG
* * * * * * **
451252 GATCATTTTGTAACTTTCAATAGTCGAGGGACTTAGCAAAGCAATATCCTATAGTCGGGG
1 GATCATTTTATAACTTTTAATAGTCGAGGGACTCAACAAAGCAACACCCTATAGTCGAAG
*
451312 GATCA-TTTATAAATTTTA
1 GATCATTTTATAACTTTTA
451330 CCCTATTTAA
Statistics
Matches: 66, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
59 10 0.15
60 56 0.85
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (60 bp):
GATCATTTTATAACTTTTAATAGTCGAGGGACTCAACAAAGCAACACCCTATAGTCGAAG
Found at i:452880 original size:21 final size:21
Alignment explanation
Indices: 452765--452880 Score: 60
Period size: 21 Copynumber: 5.6 Consensus size: 21
452755 GCGAAATAAA
**
452765 AATCGCAACGCGA-TCCCCAG
1 AATCGCAACGCGATTTTCCAG
** * *
452785 AATCGCAAATC-AGTTTCCAA
1 AATCGCAACGCGATTTTCCAG
* *
452805 AATCGCAACGCGATTCTT-GAC
1 AATCGCAACGCGATT-TTCCAG
* ** *
452826 AATCGCAATGCGATAGTACA-
1 AATCGCAACGCGATTTTCCAG
**
452846 AATTCGCATTGCGATTTTCCAG
1 AA-TCGCAACGCGATTTTCCAG
452868 AATCGCAACGCGA
1 AATCGCAACGCGA
452881 ATATGAAAAT
Statistics
Matches: 70, Mismatches: 20, Indels: 11
0.69 0.20 0.11
Matches are distributed among these distances:
19 1 0.01
20 25 0.36
21 40 0.57
22 4 0.06
ACGTcount: A:0.33, C:0.28, G:0.18, T:0.22
Consensus pattern (21 bp):
AATCGCAACGCGATTTTCCAG
Found at i:452893 original size:20 final size:20
Alignment explanation
Indices: 452868--453096 Score: 253
Period size: 20 Copynumber: 11.4 Consensus size: 20
452858 GATTTTCCAG
** *
452868 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGAATCCGTA
*
452888 AATCGCAACGCGAA-CACATA
1 AATCGCAACGCGAATC-CGTA
*
452908 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATCCGTA
* *
452928 AATCGCAACGTGTATCCGTA
1 AATCGCAACGCGAATCCGTA
*
452948 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATCCGTA
* *
452968 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGAATCCGTA
* *
452988 TATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATCCGTA
** *
453008 AATCGCAACGATAATCAGTA
1 AATCGCAACGCGAATCCGTA
* *
453028 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGAATCCGTA
*
453048 AATCGCAACGAGAATCCGTA
1 AATCGCAACGCGAATCCGTA
* *
453068 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGAATCCGTA
*
453088 AATCACAAC
1 AATCGCAAC
453097 ACTGAAATTT
Statistics
Matches: 186, Mismatches: 21, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
20 185 0.99
21 1 0.01
ACGTcount: A:0.37, C:0.25, G:0.18, T:0.19
Consensus pattern (20 bp):
AATCGCAACGCGAATCCGTA
Found at i:453825 original size:24 final size:24
Alignment explanation
Indices: 453786--453832 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
453776 AAATTTGGTC
453786 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCGGACTTTGATA
*
453810 TTGGTCAATA-CACGGATTTTGAT
1 TTGGTCAATATC-CGGACTTTGAT
453833 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGGTCAATATCCGGACTTTGATA
Found at i:454023 original size:12 final size:12
Alignment explanation
Indices: 454006--454030 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
453996 ATATAATCCT
454006 GAAGAAGAAAAA
1 GAAGAAGAAAAA
454018 GAAGAAGAAAAA
1 GAAGAAGAAAAA
454030 G
1 G
454031 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:456363 original size:33 final size:33
Alignment explanation
Indices: 456312--456562 Score: 186
Period size: 33 Copynumber: 7.2 Consensus size: 33
456302 CGGAAATTAC
* *
456312 AATCGCAACGAGAGAATCGCAATGCGAAATGAA
1 AATCGCAACAAGAAAATCGCAATGCGAAATGAA
*
456345 AATCCCAACAAGAAAATCGCAATGCGGAAATGAA
1 AATCGCAACAAGAAAATCGCAATGC-GAAATGAA
* * *
456379 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCG-C
1 AATCGCAA--C--AA-GAAAATCGCAATGCGA-AAT-GAA
* *
456418 AATGCGGAA-ATGAAAATCGCAATGCGAAATGAA
1 AAT-CGCAACAAGAAAATCGCAATGCGAAATGAA
* *
456451 AATCGCAACGAGAGAATCGCAATGCGAAATGAA
1 AATCGCAACAAGAAAATCGCAATGCGAAATGAA
* * *
456484 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCG-C
1 AATCGCAA--C--AA-GAAAATCGCAATGCGA-AAT-GAA
* *
456523 AATGCGGAA-ATGAAAATCGCAATGCGAAATGAA
1 AAT-CGCAACAAGAAAATCGCAATGCGAAATGAA
456556 AATCGCA
1 AATCGCA
456563 TTGCGATTCT
Statistics
Matches: 171, Mismatches: 27, Indels: 41
0.72 0.11 0.17
Matches are distributed among these distances:
32 9 0.05
33 63 0.37
34 43 0.25
35 3 0.02
36 1 0.01
37 1 0.01
38 17 0.10
39 24 0.14
40 10 0.06
ACGTcount: A:0.46, C:0.18, G:0.23, T:0.13
Consensus pattern (33 bp):
AATCGCAACAAGAAAATCGCAATGCGAAATGAA
Found at i:456389 original size:53 final size:53
Alignment explanation
Indices: 456326--456562 Score: 440
Period size: 53 Copynumber: 4.5 Consensus size: 53
456316 GCAACGAGAG
* * *
456326 AATCGCAATGCGAAATGAAAATCCCAACAAGAAAATCGCAATGCGGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGGAAATGAA
456379 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGGAAATGAA
456432 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGC-GAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGGAAATGAA
456484 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGGAAATGAA
456537 AATCGCAATGCGAAATGAAAATCGCA
1 AATCGCAATGCGAAATGAAAATCGCA
456563 TTGCGATTCT
Statistics
Matches: 180, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
52 52 0.29
53 128 0.71
ACGTcount: A:0.46, C:0.18, G:0.22, T:0.14
Consensus pattern (53 bp):
AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGGAAATGAA
Found at i:456395 original size:19 final size:19
Alignment explanation
Indices: 456326--456568 Score: 274
Period size: 19 Copynumber: 13.7 Consensus size: 19
456316 GCAACGAGAG
456326 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
456345 AATCCCAA--C--AA-GAA
1 AATCGCAATGCGAAATGAA
456359 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
456379 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
456398 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
456412 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
456432 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
456451 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
456465 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
456484 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
456503 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
456517 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
456537 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
456556 AATCGCATTGCGA
1 AATCGCAATGCGA
456569 TTCTCTCGTT
Statistics
Matches: 192, Mismatches: 9, Indels: 46
0.78 0.04 0.19
Matches are distributed among these distances:
14 40 0.21
15 5 0.03
16 5 0.03
17 9 0.05
18 1 0.01
19 92 0.48
20 40 0.21
ACGTcount: A:0.46, C:0.18, G:0.23, T:0.14
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:456469 original size:86 final size:84
Alignment explanation
Indices: 456312--456491 Score: 242
Period size: 86 Copynumber: 2.1 Consensus size: 84
456302 CGGAAATTAC
456312 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCCCAACAAGAAAATCGCAATGCGGAAATG
1 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCCCAACAAGAAAATCGCAA-GCGG-AATG
456377 AAAATCGCAATGCGAAATGAA
64 AAAATCGCAATGCGAAATGAA
*
456398 AATCGCAACGAGAGAATCGCAATGCGGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA-C-G
1 AATCGCAACGAGAGAATCGCAATGC-GAAATGAAAATCCCAA--C--AA-GAAAATCGCAAGCGG
*
456461 -A-GAGAATCGCAATGCGAAATGAA
60 AATGAAAATCGCAATGCGAAATGAA
456484 AATCGCAA
1 AATCGCAA
456492 TGCGAAATGA
Statistics
Matches: 86, Mismatches: 2, Indels: 12
0.86 0.02 0.12
Matches are distributed among these distances:
86 54 0.63
87 16 0.19
89 2 0.02
90 1 0.01
91 2 0.02
92 11 0.13
ACGTcount: A:0.47, C:0.18, G:0.22, T:0.13
Consensus pattern (84 bp):
AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCCCAACAAGAAAATCGCAAGCGGAATGAA
AATCGCAATGCGAAATGAA
Found at i:456512 original size:105 final size:106
Alignment explanation
Indices: 456326--456562 Score: 440
Period size: 105 Copynumber: 2.2 Consensus size: 106
456316 GCAACGAGAG
*
456326 AATCGCAATGCGAAATGAAAATCCCAACAAGAAAATCGCAATGCGGAAATGAAAATCGCAATGCG
1 AATCGCAATGCGAAATGAAAATCGCAACAAGAAAATCGCAATGCGGAAATGAAAATCGCAATGCG
456391 AAATGAAAATCGCAACGAGAGAATCGCAATGCGGAAATGAA
66 AAATGAAAATCGCAACGAGAGAATCGCAATGCGGAAATGAA
* *
456432 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGC-GAAATGAAAATCGCAATGCG
1 AATCGCAATGCGAAATGAAAATCGCAACAAGAAAATCGCAATGCGGAAATGAAAATCGCAATGCG
456496 AAATGAAAATCGCAACGAGAGAATCGCAATGCGGAAATGAA
66 AAATGAAAATCGCAACGAGAGAATCGCAATGCGGAAATGAA
456537 AATCGCAATGCGAAATGAAAATCGCA
1 AATCGCAATGCGAAATGAAAATCGCA
456563 TTGCGATTCT
Statistics
Matches: 128, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
105 87 0.68
106 41 0.32
ACGTcount: A:0.46, C:0.18, G:0.22, T:0.14
Consensus pattern (106 bp):
AATCGCAATGCGAAATGAAAATCGCAACAAGAAAATCGCAATGCGGAAATGAAAATCGCAATGCG
AAATGAAAATCGCAACGAGAGAATCGCAATGCGGAAATGAA
Found at i:456602 original size:53 final size:52
Alignment explanation
Indices: 456539--456654 Score: 160
Period size: 53 Copynumber: 2.2 Consensus size: 52
456529 GAAATGAAAA
*
456539 TCGCAATGCGAAATGAAAATCGCATTGCGATTCTCTCGTTGCGATTTTCATT
1 TCGCATTGCGAAATGAAAATCGCATTGCGATTCTCTCGTTGCGATTTTCATT
** ** **
456591 TCCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATT
1 T-CGCATTGCGAAATGAAAATCGCATTGCGATTCTCTCGTTGCGATTTTCATT
456644 TCGCATTGCGA
1 TCGCATTGCGA
456655 TTTTCATTTC
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
52 11 0.20
53 45 0.80
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.39
Consensus pattern (52 bp):
TCGCATTGCGAAATGAAAATCGCATTGCGATTCTCTCGTTGCGATTTTCATT
Found at i:456617 original size:19 final size:19
Alignment explanation
Indices: 456577--456664 Score: 123
Period size: 19 Copynumber: 4.8 Consensus size: 19
456567 GATTCTCTCG
456577 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
456597 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
456616 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
456630 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
456649 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
456665 AACATAATGC
Statistics
Matches: 61, Mismatches: 2, Indels: 11
0.82 0.03 0.15
Matches are distributed among these distances:
14 6 0.10
16 7 0.11
17 7 0.11
19 26 0.43
20 15 0.25
ACGTcount: A:0.14, C:0.23, G:0.16, T:0.48
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:456780 original size:14 final size:14
Alignment explanation
Indices: 456751--456790 Score: 62
Period size: 14 Copynumber: 2.8 Consensus size: 14
456741 TTCGCATCAA
456751 TTACACAATCAACTT
1 TTACA-AATCAACTT
*
456766 TTACAAATCATCTT
1 TTACAAATCAACTT
456780 TTACAAATCAA
1 TTACAAATCAA
456791 TTAAACAATC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 18 0.78
15 5 0.22
ACGTcount: A:0.42, C:0.23, G:0.00, T:0.35
Consensus pattern (14 bp):
TTACAAATCAACTT
Found at i:458740 original size:19 final size:19
Alignment explanation
Indices: 458698--458870 Score: 150
Period size: 19 Copynumber: 9.6 Consensus size: 19
458688 TAGTTTACTT
* *
458698 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
*
458718 TCGCAACGCGAAATGAGAA
1 TCGCAACGCGAAATGAAAA
* **
458737 TCGCAACGAGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
**
458756 TCGCAACGCGAAACAAAAA
1 TCGCAACGCGAAATGAAAA
458775 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
458794 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
*
458808 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
458827 TCGCAA--CG--A-GAGAA
1 TCGCAACGCGAAATGAAAA
458841 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
* *
458860 TTGCAATGCGA
1 TCGCAACGCGA
458871 TTTTGGTTTC
Statistics
Matches: 126, Mismatches: 17, Indels: 21
0.77 0.10 0.13
Matches are distributed among these distances:
14 18 0.14
15 1 0.01
16 7 0.06
17 7 0.06
18 1 0.01
19 80 0.63
20 12 0.10
ACGTcount: A:0.46, C:0.23, G:0.20, T:0.11
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:458811 original size:14 final size:14
Alignment explanation
Indices: 458792--458848 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
458782 GCGAAATGAA
*
458792 AATCGCAACGACAG
1 AATCGCAACGAAAG
458806 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
*
458823 AAAATCGCAACGAGAG
1 --AATCGCAACGAAAG
458839 AATCGCAACG
1 AATCGCAACG
458849 CGAAATGAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 18 0.50
16 5 0.14
17 5 0.14
19 8 0.22
ACGTcount: A:0.44, C:0.23, G:0.23, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:458819 original size:33 final size:33
Alignment explanation
Indices: 458773--458865 Score: 159
Period size: 33 Copynumber: 2.8 Consensus size: 33
458763 GCGAAACAAA
458773 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGACAG
* *
458806 AATCGCAATGCGAAATGAAAATCGCAACGAGAG
1 AATCGCAACGCGAAATGAAAATCGCAACGACAG
*
458839 AATCGCAACGCGAAATGAAAATTGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
458866 TGCGATTTTG
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 56 1.00
ACGTcount: A:0.46, C:0.20, G:0.22, T:0.12
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGACAG
Found at i:458888 original size:19 final size:18
Alignment explanation
Indices: 458866--458975 Score: 92
Period size: 19 Copynumber: 6.3 Consensus size: 18
458856 AAAATTGCAA
458866 TGCGATTTTGGTTTCGCGT
1 TGCGATTTT-GTTTCGCGT
458885 TGCGATTTTG--T--CGT
1 TGCGATTTTGTTTCGCGT
458899 TGCGATTTTGGTTTCGCGT
1 TGCGATTTT-GTTTCGCGT
*
458918 TGCGATTCTG--T--CGT
1 TGCGATTTTGTTTCGCGT
*
458932 TGCGATTTTCATTTCGCGT
1 TGCGATTTT-GTTTCGCGT
*
458951 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT--GTTTCGCGT
458971 TGCGA
1 TGCGA
458976 AAGTAAACTA
Statistics
Matches: 74, Mismatches: 6, Indels: 21
0.73 0.06 0.21
Matches are distributed among these distances:
14 23 0.31
15 1 0.01
16 2 0.03
17 2 0.03
18 2 0.03
19 32 0.43
20 12 0.16
ACGTcount: A:0.09, C:0.16, G:0.28, T:0.46
Consensus pattern (18 bp):
TGCGATTTTGTTTCGCGT
Found at i:458901 original size:14 final size:14
Alignment explanation
Indices: 458882--458940 Score: 64
Period size: 14 Copynumber: 3.9 Consensus size: 14
458872 TTTGGTTTCG
458882 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
458896 CGTTGCGATTTTGGTTT
1 CGTTGCGATTTT-G--T
*
458913 CGCGTTGCGATTCTGT
1 --CGTTGCGATTTTGT
458929 CGTTGCGATTTT
1 CGTTGCGATTTT
458941 CATTTCGCGT
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
14 23 0.61
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 11 0.29
ACGTcount: A:0.07, C:0.17, G:0.29, T:0.47
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:458908 original size:33 final size:33
Alignment explanation
Indices: 458866--458959 Score: 161
Period size: 33 Copynumber: 2.8 Consensus size: 33
458856 AAAATTGCAA
458866 TGCGATTTTGGTTTCGCGTTGCGATTTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTTTGTCGT
*
458899 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTTTGTCGT
**
458932 TGCGATTTTCATTTCGCGTTGCGATTTT
1 TGCGATTTTGGTTTCGCGTTGCGATTTT
458960 AAGTTTCGTG
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.07, C:0.17, G:0.28, T:0.48
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTTTGTCGT
Found at i:459139 original size:83 final size:87
Alignment explanation
Indices: 459023--459230 Score: 266
Period size: 93 Copynumber: 2.4 Consensus size: 87
459013 ATGGATTGCA
* * **
459023 TTAC-TTCAACCTATAGACAAAACAAAGACAAATACTGACTT-CAG-G-G-TA-TTAGTTTAGCA
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACT-ACTTACAGTGAGATACACAGTTTAGCA
459082 GAATTGGCAGCAACCGAACAAAT
65 GAATTGGCAGCAACCGAACAAAT
*
459105 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTACTT-ACAGTG----AG-ATACACAGTT
459170 TAGCAGAATTGGCAGCAACCGAACAAAT
60 TAGCAGAATTGGCAGCAACCGAACAAAT
459198 TTACTTTCAACCAAAAGACAAAACAAAGACAAA
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAA
459231 ACAAAGACAA
Statistics
Matches: 109, Mismatches: 5, Indels: 13
0.86 0.04 0.10
Matches are distributed among these distances:
82 7 0.06
83 30 0.28
84 3 0.03
85 1 0.01
90 1 0.01
92 2 0.02
93 65 0.60
ACGTcount: A:0.46, C:0.20, G:0.13, T:0.21
Consensus pattern (87 bp):
TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTACTTACAGTGAGATACACAGTTTAGCAG
AATTGGCAGCAACCGAACAAAT
Found at i:459227 original size:11 final size:11
Alignment explanation
Indices: 459211--459241 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
459201 CTTTCAACCA
459211 AAAGACAAAAC
1 AAAGACAAAAC
459222 AAAGACAAAAC
1 AAAGACAAAAC
459233 AAAGACAAA
1 AAAGACAAA
459242 TACTATTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.74, C:0.16, G:0.10, T:0.00
Consensus pattern (11 bp):
AAAGACAAAAC
Found at i:459319 original size:93 final size:93
Alignment explanation
Indices: 459222--459492 Score: 533
Period size: 93 Copynumber: 2.9 Consensus size: 93
459212 AAGACAAAAC
459222 AAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGC
1 AAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGC
459287 AGCAACCGAACAAATTTACTTTCAACCA
66 AGCAACCGAACAAATTTACTTTCAACCA
459315 AAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGC
1 AAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGC
459380 AGCAACCGAACAAATTTACTTTCAACCA
66 AGCAACCGAACAAATTTACTTTCAACCA
459408 AAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGC
1 AAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGC
*
459473 AGCAACCGAATAAATTTACT
66 AGCAACCGAACAAATTTACT
459493 AAGCAATCTA
Statistics
Matches: 177, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 177 1.00
ACGTcount: A:0.46, C:0.18, G:0.13, T:0.22
Consensus pattern (93 bp):
AAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGC
AGCAACCGAACAAATTTACTTTCAACCA
Found at i:461208 original size:20 final size:20
Alignment explanation
Indices: 461177--461273 Score: 100
Period size: 20 Copynumber: 5.2 Consensus size: 20
461167 TTTTGGTTGA
461177 AATGAAAATCGCAACGAGAG
1 AATGAAAATCGCAACGAGAG
***
461197 AATGACTGTCGCAACGAGAG
1 AATGAAAATCGCAACGAGAG
461217 AAATGAAAATCGCAAC--GAG
1 -AATGAAAATCGCAACGAGAG
*
461236 -A-G--AATCGCAACGCGA-
1 AATGAAAATCGCAACGAGAG
461251 AATGAAAATCGCAACGAGAG
1 AATGAAAATCGCAACGAGAG
461271 AAT
1 AAT
461274 CGCAACGCGA
Statistics
Matches: 62, Mismatches: 7, Indels: 16
0.73 0.08 0.19
Matches are distributed among these distances:
14 9 0.15
16 4 0.06
17 2 0.03
19 15 0.24
20 20 0.32
21 12 0.19
ACGTcount: A:0.46, C:0.18, G:0.25, T:0.11
Consensus pattern (20 bp):
AATGAAAATCGCAACGAGAG
Found at i:461229 original size:21 final size:21
Alignment explanation
Indices: 461175--461239 Score: 96
Period size: 21 Copynumber: 3.1 Consensus size: 21
461165 TCTTTTGGTT
461175 GAAATGAAAATCGCAACGAGA
1 GAAATGAAAATCGCAACGAGA
***
461196 G-AATGACTGTCGCAACGAGA
1 GAAATGAAAATCGCAACGAGA
461216 GAAATGAAAATCGCAACGAGA
1 GAAATGAAAATCGCAACGAGA
461237 GAA
1 GAA
461240 TCGCAACGCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
20 17 0.46
21 20 0.54
ACGTcount: A:0.48, C:0.15, G:0.26, T:0.11
Consensus pattern (21 bp):
GAAATGAAAATCGCAACGAGA
Found at i:461243 original size:14 final size:14
Alignment explanation
Indices: 461224--461280 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
461214 GAGAAATGAA
461224 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
461238 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
461257 AATCGCAACGAGAG
1 AATCGCAACGAGAG
461271 AATCGCAACG
1 AATCGCAACG
461281 CGAAATGAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.28
ACGTcount: A:0.44, C:0.23, G:0.25, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:461256 original size:33 final size:33
Alignment explanation
Indices: 461175--461297 Score: 165
Period size: 33 Copynumber: 3.5 Consensus size: 33
461165 TCTTTTGGTT
*
461175 GAAATGAAAATCGCAACGAGAGAATGACTGTCGCAACGAGA
1 GAAATGAAAATCGCAACGAGAG-A--A---TCGCAAC--GC
461216 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
461249 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
461282 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
461298 TGCGATTTTG
Statistics
Matches: 81, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
33 50 0.62
35 7 0.09
38 1 0.01
40 1 0.01
41 22 0.27
ACGTcount: A:0.46, C:0.19, G:0.24, T:0.11
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:461333 original size:14 final size:14
Alignment explanation
Indices: 461314--461370 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
461304 TTTGGTTTCG
461314 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
461328 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
*
461347 CGTTACGATTCTCT
1 CGTTGCGATTCTCT
461361 CGTTGCGATT
1 CGTTGCGATT
461371 TTCATTTTTC
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
14 19 0.56
16 3 0.09
17 3 0.09
19 9 0.26
ACGTcount: A:0.11, C:0.25, G:0.21, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:461346 original size:33 final size:33
Alignment explanation
Indices: 461298--461377 Score: 133
Period size: 33 Copynumber: 2.4 Consensus size: 33
461288 AAAATCGCAA
** *
461298 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTACGATTCTCTCGT
461331 TGCGATTTTCATTTCGCGTTACGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTACGATTCTCTCGT
461364 TGCGATTTTCATTT
1 TGCGATTTTCATTT
461378 TTCTCGTTGC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.10, C:0.21, G:0.21, T:0.47
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTACGATTCTCTCGT
Found at i:461383 original size:21 final size:21
Alignment explanation
Indices: 461358--461431 Score: 96
Period size: 21 Copynumber: 3.5 Consensus size: 21
461348 GTTACGATTC
461358 TCTCGTTGCGATTTTCATTTT
1 TCTCGTTGCGATTTTCATTTT
**
461379 TCTCGTTGCAGATAGTCA-TTT
1 TCTCGTTGC-GATTTTCATTTT
* *
461400 TCACGTTGCGATTTTCATTTA
1 TCTCGTTGCGATTTTCATTTT
461421 TCTCGTTGCGA
1 TCTCGTTGCGA
461432 CTCTTCTGCA
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
20 6 0.14
21 32 0.73
22 6 0.14
ACGTcount: A:0.15, C:0.20, G:0.18, T:0.47
Consensus pattern (21 bp):
TCTCGTTGCGATTTTCATTTT
Found at i:461553 original size:33 final size:33
Alignment explanation
Indices: 461511--461581 Score: 117
Period size: 33 Copynumber: 2.2 Consensus size: 33
461501 AATACTAACT
461511 TGAAAATCGCAACGAGAGAAT-AGCAACGCGAAA
1 TGAAAATCGCAACGAGAGAATCA-CAACGCGAAA
*
461544 TGAAAATCGCAACGAGAGAATCATAACGCGAAA
1 TGAAAATCGCAACGAGAGAATCACAACGCGAAA
461577 TGAAA
1 TGAAA
461582 TCTAAGTGAA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
33 35 0.97
34 1 0.03
ACGTcount: A:0.49, C:0.17, G:0.23, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGAGAGAATCACAACGCGAAA
Found at i:461986 original size:20 final size:20
Alignment explanation
Indices: 461961--462152 Score: 244
Period size: 20 Copynumber: 9.6 Consensus size: 20
461951 CTTTAAAAAT
461961 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
461981 CGCGTTGCGATTTACTGATTA
1 CGCGTTGCGATTTACGGA-TA
*
462002 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
462021 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
*
462041 CGCATTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
462061 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
**
462081 CATGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
462101 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
462121 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
462141 CGCGTTGCGATT
1 CGCGTTGCGATT
462153 CTGGAAAATC
Statistics
Matches: 150, Mismatches: 18, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
19 2 0.01
20 145 0.97
21 3 0.02
ACGTcount: A:0.19, C:0.19, G:0.27, T:0.35
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:467153 original size:49 final size:49
Alignment explanation
Indices: 467084--467177 Score: 152
Period size: 49 Copynumber: 1.9 Consensus size: 49
467074 TAAGTTTTTG
* *
467084 TTCATCCTAAATTATGAGTTCTAATTTACTTAGGATTAGGTTTTATCTC
1 TTCATCCAAAATTATAAGTTCTAATTTACTTAGGATTAGGTTTTATCTC
* *
467133 TTCATCCAAAATTCTAAGTTCTAATTTACTTTGGATTAGGTTTTA
1 TTCATCCAAAATTATAAGTTCTAATTTACTTAGGATTAGGTTTTA
467178 CTTGTTTAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 41 1.00
ACGTcount: A:0.28, C:0.14, G:0.12, T:0.47
Consensus pattern (49 bp):
TTCATCCAAAATTATAAGTTCTAATTTACTTAGGATTAGGTTTTATCTC
Found at i:467938 original size:7 final size:7
Alignment explanation
Indices: 467926--467956 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
467916 CCCGAGAGTT
467926 ACATAAA
1 ACATAAA
467933 ACATAAA
1 ACATAAA
467940 ACATAAA
1 ACATAAA
467947 ACATAAA
1 ACATAAA
467954 ACA
1 ACA
467957 CACTCCAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.71, C:0.16, G:0.00, T:0.13
Consensus pattern (7 bp):
ACATAAA
Found at i:470903 original size:21 final size:20
Alignment explanation
Indices: 470857--470912 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
470847 TCATTTAAAT
470857 AGAATATTGACACCACTTTAA
1 AGAATATTGACACC-CTTTAA
*
470878 A-AATAGTTGGCACCCTTTAA
1 AGAATA-TTGACACCCTTTAA
470898 AGAATATTGACACCC
1 AGAATATTGACACCC
470913 ATCGTTAGTC
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
20 19 0.61
21 12 0.39
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.27
Consensus pattern (20 bp):
AGAATATTGACACCCTTTAA
Found at i:473469 original size:7 final size:7
Alignment explanation
Indices: 473457--473482 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
473447 GAAAATAAAA
473457 ATAATAT
1 ATAATAT
473464 ATAATAT
1 ATAATAT
473471 ATAATAT
1 ATAATAT
473478 ATAAT
1 ATAAT
473483 TCCTTTTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (7 bp):
ATAATAT
Found at i:478229 original size:13 final size:13
Alignment explanation
Indices: 478211--478237 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
478201 TATTCTGATA
478211 ATTTTAAAAAATT
1 ATTTTAAAAAATT
478224 ATTTTAAAAAATT
1 ATTTTAAAAAATT
478237 A
1 A
478238 AAATTAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATTTTAAAAAATT
Found at i:478643 original size:26 final size:28
Alignment explanation
Indices: 478594--478645 Score: 74
Period size: 26 Copynumber: 1.9 Consensus size: 28
478584 AAAAATTTGG
478594 GTTTTTATAAATAAATTAAGTTTTTAAA
1 GTTTTTATAAATAAATTAAGTTTTTAAA
478622 GTTTTT-TAAA-AAATTACA-TTTTTA
1 GTTTTTATAAATAAATTA-AGTTTTTA
478646 TTATTAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
26 12 0.52
27 5 0.22
28 6 0.26
ACGTcount: A:0.40, C:0.02, G:0.06, T:0.52
Consensus pattern (28 bp):
GTTTTTATAAATAAATTAAGTTTTTAAA
Found at i:478786 original size:2 final size:2
Alignment explanation
Indices: 478779--478814 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
478769 GTATTAAGGC
478779 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
478815 TGGTTGAGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:482810 original size:15 final size:15
Alignment explanation
Indices: 482790--482821 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
482780 AACTAACGAA
482790 TCATAAGAATCGTTT
1 TCATAAGAATCGTTT
*
482805 TCATAAGCATCGTTT
1 TCATAAGAATCGTTT
482820 TC
1 TC
482822 TTTTTCCTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.19, G:0.12, T:0.41
Consensus pattern (15 bp):
TCATAAGAATCGTTT
Found at i:483558 original size:19 final size:18
Alignment explanation
Indices: 483536--483574 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
483526 AATATAAAAA
*
483536 TAAATGTCTAAATTATATT
1 TAAATGACTAAA-TATATT
*
483555 TAAATGACTTAATATATT
1 TAAATGACTAAATATATT
483573 TA
1 TA
483575 TATTTAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.46
Consensus pattern (18 bp):
TAAATGACTAAATATATT
Found at i:485838 original size:20 final size:20
Alignment explanation
Indices: 485796--485844 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
485786 AAAATAATAA
*
485796 AAATTAAATCTCAAATTTAC
1 AAATTAAATCTCAAATATAC
*
485816 AAATTAAATC-CTAAATATGC
1 AAATTAAATCTC-AAATATAC
*
485836 AAAATAAAT
1 AAATTAAAT
485845 AAATAAAACG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 1 0.04
20 24 0.96
ACGTcount: A:0.55, C:0.12, G:0.02, T:0.31
Consensus pattern (20 bp):
AAATTAAATCTCAAATATAC
Found at i:493433 original size:35 final size:35
Alignment explanation
Indices: 493392--493462 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
493382 AAGAAATAAG
*
493392 TTTATGGGTCCTGCTTTTAATTTAGTTTATTAATA
1 TTTATGGGTCCTGCTTTTAATTTAGTATATTAATA
493427 TTTATGGGTCCTGCTTTTAATTTAGTATATTAATA
1 TTTATGGGTCCTGCTTTTAATTTAGTATATTAATA
493462 T
1 T
493463 AGTTTTTAAC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.24, C:0.08, G:0.14, T:0.54
Consensus pattern (35 bp):
TTTATGGGTCCTGCTTTTAATTTAGTATATTAATA
Found at i:496098 original size:661 final size:661
Alignment explanation
Indices: 494838--496160 Score: 2592
Period size: 661 Copynumber: 2.0 Consensus size: 661
494828 TGCATTTTAT
494838 TGTCGTTGGCTGGGAATTTTGCTTTTCCTATCATTTTATCAAGGTTTTAGGGTTGATTGTCGGGT
1 TGTCGTTGGCTGGGAATTTTGCTTTTCCTATCATTTTATCAAGGTTTTAGGGTTGATTGTCGGGT
*
494903 CTGGTGTAAATTATCTGGATATGAGTTAAGTGTCTAATATGAATAGGTGTTCCGAATGTTGGAAT
66 CTGGTGTAAATTATCTGGATATGAGTTAAGTGTCTAATATGAATAGGAGTTCCGAATGTTGGAAT
494968 TGAGCATTTTAGAGAAATTAAGAGTTCACTTAATGTAGTTTCTGGATACATAATTTATTTTGTAC
131 TGAGCATTTTAGAGAAATTAAGAGTTCACTTAATGTAGTTTCTGGATACATAATTTATTTTGTAC
495033 CTTTCAAATGACTAGATATGAAGTATAGTACATGGCTTGGTTTTGCTTTTTTGTCTGACATACAT
196 CTTTCAAATGACTAGATATGAAGTATAGTACATGGCTTGGTTTTGCTTTTTTGTCTGACATACAT
* *
495098 GTCATCCAATGATTCTATGCAACTGGCTTGTTAGAGCTTTGTATGTTTGAATGCTAAAATTGGAT
261 GGCATCCAATGATTCTATGCAACCGGCTTGTTAGAGCTTTGTATGTTTGAATGCTAAAATTGGAT
495163 TGCTTAAGGCAGTGATCTAAAAGTATTTCCCGTCATTTTAGTGCTTAATAATAACTGAAAAGGTC
326 TGCTTAAGGCAGTGATCTAAAAGTATTTCCCGTCATTTTAGTGCTTAATAATAACTGAAAAGGTC
495228 ATTGTCATCTATGATCATGTCAATCCGTGTGGCATTGCATAACTTTTTGAGCATGAATAATTTTG
391 ATTGTCATCTATGATCATGTCAATCCGTGTGGCATTGCATAACTTTTTGAGCATGAATAATTTTG
495293 GTCTTGGATTGTGGCATTTTTCTTGAACTACACATCTGTCATTTTTTGTGTTAATTTTTCAATGA
456 GTCTTGGATTGTGGCATTTTTCTTGAACTACACATCTGTCATTTTTTGTGTTAATTTTTCAATGA
495358 TCTAAGTTGTTACCATTAAATTTTAGCATATGAGCTATGTTTACTCGGGTGAGTATTGGAAACGG
521 TCTAAGTTGTTACCATTAAATTTTAGCATATGAGCTATGTTTACTCGGGTGAGTATTGGAAACGG
495423 CTAGTATACGTCCGACACAAGTTTGTTCAATTTTTTTTGAAGTTATTCAGTATATTTATAGGATC
586 CTAGTATACGTCCGACACAAGTTTGTTCAATTTTTTTTGAAGTTATTCAGTATATTTATAGGATC
495488 ATTGTGTTGGA
651 ATTGTGTTGGA
495499 TGTCGTTGGCTGGGAATTTTGCTTTTCCTATCATTTTATCAAGGTTTTAGGGTTGATTGTCGGGT
1 TGTCGTTGGCTGGGAATTTTGCTTTTCCTATCATTTTATCAAGGTTTTAGGGTTGATTGTCGGGT
495564 CTGGTGTAAATTATCTGGATATGAGTTAAGTGTCTAATATGAATAGGAGTTCCGAATGTTGGAAT
66 CTGGTGTAAATTATCTGGATATGAGTTAAGTGTCTAATATGAATAGGAGTTCCGAATGTTGGAAT
495629 TGAGCATTTTAGAGAAATTAAGAGTTCACTTAATGTAGTTTCTGGATACATAATTTATTTTGTAC
131 TGAGCATTTTAGAGAAATTAAGAGTTCACTTAATGTAGTTTCTGGATACATAATTTATTTTGTAC
*
495694 CTTTCAAATGACTAGATATGAAGTATAGTATATGGCTTGGTTTTGCTTTTTTGTCTGACATACAT
196 CTTTCAAATGACTAGATATGAAGTATAGTACATGGCTTGGTTTTGCTTTTTTGTCTGACATACAT
495759 GGCATCCAATGATTCTATGCAACCGGCTTGTTAGAGCTTTGTATGTTTGAATGCTAAAATTGGAT
261 GGCATCCAATGATTCTATGCAACCGGCTTGTTAGAGCTTTGTATGTTTGAATGCTAAAATTGGAT
* *
495824 TGCTTAAGGCATTGATCTAAAAGTATTTCCCGTCATTTTAGTTCTTAATAATAACTGAAAAGGTC
326 TGCTTAAGGCAGTGATCTAAAAGTATTTCCCGTCATTTTAGTGCTTAATAATAACTGAAAAGGTC
495889 ATTGTCATCTATGATCATGTCAATCCGTGTGGCATTGCATAACTTTTTGAGCATGAATAATTTTG
391 ATTGTCATCTATGATCATGTCAATCCGTGTGGCATTGCATAACTTTTTGAGCATGAATAATTTTG
495954 GTCTTGGATTGTGGCATTTTTCTTGAACTACACATCTGTCATTTTTTGTGTTAATTTTTCAATGA
456 GTCTTGGATTGTGGCATTTTTCTTGAACTACACATCTGTCATTTTTTGTGTTAATTTTTCAATGA
496019 TCTAAGTTGTTACCATTAAATTTTAGCATATGAGCTATGTTTACTCGGGTGAGTATTGGAAACGG
521 TCTAAGTTGTTACCATTAAATTTTAGCATATGAGCTATGTTTACTCGGGTGAGTATTGGAAACGG
496084 CTAGTATACGTCCGACACAAGTTTGTTCAATTTTTTTTGAAGTTATTCAGTATATTTATAGGATC
586 CTAGTATACGTCCGACACAAGTTTGTTCAATTTTTTTTGAAGTTATTCAGTATATTTATAGGATC
496149 ATTGTGTTGGA
651 ATTGTGTTGGA
496160 T
1 T
496161 AGAATTACTT
Statistics
Matches: 656, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
661 656 1.00
ACGTcount: A:0.26, C:0.13, G:0.20, T:0.41
Consensus pattern (661 bp):
TGTCGTTGGCTGGGAATTTTGCTTTTCCTATCATTTTATCAAGGTTTTAGGGTTGATTGTCGGGT
CTGGTGTAAATTATCTGGATATGAGTTAAGTGTCTAATATGAATAGGAGTTCCGAATGTTGGAAT
TGAGCATTTTAGAGAAATTAAGAGTTCACTTAATGTAGTTTCTGGATACATAATTTATTTTGTAC
CTTTCAAATGACTAGATATGAAGTATAGTACATGGCTTGGTTTTGCTTTTTTGTCTGACATACAT
GGCATCCAATGATTCTATGCAACCGGCTTGTTAGAGCTTTGTATGTTTGAATGCTAAAATTGGAT
TGCTTAAGGCAGTGATCTAAAAGTATTTCCCGTCATTTTAGTGCTTAATAATAACTGAAAAGGTC
ATTGTCATCTATGATCATGTCAATCCGTGTGGCATTGCATAACTTTTTGAGCATGAATAATTTTG
GTCTTGGATTGTGGCATTTTTCTTGAACTACACATCTGTCATTTTTTGTGTTAATTTTTCAATGA
TCTAAGTTGTTACCATTAAATTTTAGCATATGAGCTATGTTTACTCGGGTGAGTATTGGAAACGG
CTAGTATACGTCCGACACAAGTTTGTTCAATTTTTTTTGAAGTTATTCAGTATATTTATAGGATC
ATTGTGTTGGA
Found at i:498590 original size:6 final size:6
Alignment explanation
Indices: 498579--498610 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
498569 GACATTTAAG
498579 CCTAAA CCTAAA CCTAAA CCTAAA CCTAAA CC
1 CCTAAA CCTAAA CCTAAA CCTAAA CCTAAA CC
498611 GCACTATTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.47, C:0.38, G:0.00, T:0.16
Consensus pattern (6 bp):
CCTAAA
Found at i:499202 original size:21 final size:20
Alignment explanation
Indices: 499163--499218 Score: 53
Period size: 20 Copynumber: 2.8 Consensus size: 20
499153 CTAAAATTGG
* *
499163 AATCTAAATTATC-TCATTAA
1 AATCTAATTTCTCATCATT-A
499183 AAT-TACATTTCTCATCATTA
1 AATCTA-ATTTCTCATCATTA
*
499203 TATCTAATTTCTCATC
1 AATCTAATTTCTCATC
499219 CAATTTTTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
19 2 0.07
20 21 0.70
21 7 0.23
ACGTcount: A:0.36, C:0.20, G:0.00, T:0.45
Consensus pattern (20 bp):
AATCTAATTTCTCATCATTA
Found at i:501285 original size:2 final size:2
Alignment explanation
Indices: 501280--501341 Score: 124
Period size: 2 Copynumber: 31.0 Consensus size: 2
501270 TTATTCACAC
501280 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
501322 AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT
501342 GGCGAGGAAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 60 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:501928 original size:11 final size:11
Alignment explanation
Indices: 501912--501945 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
501902 ATCCAGTTGC
501912 TTGTTTTATTA
1 TTGTTTTATTA
*
501923 TTGTTTTGTTA
1 TTGTTTTATTA
*
501934 GTGTTTTATTA
1 TTGTTTTATTA
501945 T
1 T
501946 AGCAATTCTG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.15, C:0.00, G:0.15, T:0.71
Consensus pattern (11 bp):
TTGTTTTATTA
Found at i:503719 original size:16 final size:17
Alignment explanation
Indices: 503698--503729 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
503688 TACTATTCAT
503698 GTGAATAGT-AAATTTC
1 GTGAATAGTGAAATTTC
503714 GTGAATAGTGAAATTT
1 GTGAATAGTGAAATTT
503730 TGTCGGCGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.38, C:0.03, G:0.22, T:0.38
Consensus pattern (17 bp):
GTGAATAGTGAAATTTC
Found at i:513595 original size:29 final size:29
Alignment explanation
Indices: 513553--513613 Score: 113
Period size: 29 Copynumber: 2.1 Consensus size: 29
513543 GACAAATTCA
513553 CGTTGGATTGTTGGCGAGGGAGGACTACG
1 CGTTGGATTGTTGGCGAGGGAGGACTACG
*
513582 CGTTGGATTGTTGGCTAGGGAGGACTACG
1 CGTTGGATTGTTGGCGAGGGAGGACTACG
513611 CGT
1 CGT
513614 GAAGCTGGCG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.16, C:0.15, G:0.43, T:0.26
Consensus pattern (29 bp):
CGTTGGATTGTTGGCGAGGGAGGACTACG
Done.