genome.fa.s790.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000790.1 Hibiscus syriacus cultivar Beakdansim tig00001529_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88521

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5597--5629	8	4.1	8	92	0	57	27	0	36	36	1.57
13837--13889	23	2.4	21	81	9	52	75	1	5	16	1.08
14946--15011	23	2.9	23	93	0	114	51	18	16	13	1.76
21946--22050	37	2.8	37	85	0	147	41	15	10	32	1.81
22461--22509	22	2.2	23	82	10	57	26	4	0	69	1.06
22545--22590	2	23.0	2	100	0	92	50	0	0	50	1.00
22698--22818	62	2.0	62	80	12	142	28	4	3	63	1.29
22804--22833	11	2.6	12	94	5	53	23	3	0	73	0.98
22783--22822	18	2.2	18	86	4	53	22	0	0	77	0.77
22782--22829	18	2.6	17	78	12	51	25	2	0	72	0.95
22782--22838	27	2.2	25	87	6	78	24	1	0	73	0.92
22791--22856	27	2.4	27	80	7	71	22	4	0	72	1.02
27112--27171	30	2.1	30	85	11	83	25	1	0	73	0.93
27120--27168	13	3.7	14	81	10	50	26	2	0	71	0.97
31885--31931	16	3.1	15	83	16	62	80	6	12	0	0.88
31906--31944	17	2.2	18	86	9	53	82	7	7	2	0.94
33561--34823	106	11.9	106	92	0	2008	33	25	18	22	1.96
35573--35677	37	2.8	37	83	0	138	40	15	12	32	1.84
36089--36124	4	8.5	4	88	11	54	25	0	0	75	0.81
38536--38576	19	2.1	19	86	9	55	19	36	0	43	1.51
41618--41665	23	2.1	23	88	0	69	35	12	18	33	1.89
42140--42212	23	3.2	23	90	0	110	38	20	5	35	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42623--42695	23	3.2	23	90	0	110	38	20	5	35	1.76
43112--43184	23	3.2	23	90	0	110	38	20	5	35	1.76
41739--46329	489	9.4	489	97	1	8665	39	11	7	41	1.70
43600--43672	23	3.2	23	90	0	110	36	21	5	35	1.77
44080--44152	23	3.2	23	90	0	110	38	20	5	35	1.76
44569--44641	23	3.2	23	90	0	110	38	20	5	35	1.76
45058--45130	23	3.2	23	90	0	110	36	21	5	35	1.77
45540--45612	23	3.2	23	92	0	119	38	21	5	34	1.77
41739--46329	971	4.7	977	97	1	8654	39	11	7	41	1.70
46039--46101	23	2.7	23	95	0	108	36	22	4	36	1.75
48839--50327	183	8.1	183	93	1	2515	33	16	14	35	1.89
51530--51607	3	26.0	3	76	0	75	24	32	6	37	1.81
51543--51624	36	2.3	36	89	0	119	20	31	8	39	1.83
51534--51624	12	7.3	12	81	7	92	21	31	7	38	1.82
51531--51624	6	15.7	6	78	4	64	22	31	7	38	1.82
53214--54040	200	4.1	200	96	0	1523	31	17	14	36	1.90
53214--54040	399	2.1	399	96	0	1521	31	17	14	36	1.90
54147--54207	19	3.3	18	88	2	59	52	11	1	34	1.47
54159--54207	19	2.6	19	96	0	89	55	10	2	32	1.45
55977--56042	33	2.0	33	90	0	105	22	48	0	28	1.51
56076--56140	21	3.1	21	93	0	103	16	30	10	41	1.83
58165--58217	24	2.2	24	83	6	63	26	5	13	54	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58362--58417	20	2.8	19	76	7	58	21	14	8	55	1.66
58543--58589	20	2.3	20	89	10	78	17	19	8	55	1.67
58329--58801	181	2.6	182	89	1	700	26	17	13	42	1.86
59723--59793	31	2.3	31	90	0	106	36	21	18	23	1.95
60750--60788	19	2.0	20	90	5	62	35	15	2	46	1.60
65808--65840	6	5.5	6	92	0	57	0	18	33	48	1.48
75357--75404	16	3.0	16	78	6	53	20	0	14	64	1.28
76044--76080	19	1.9	19	88	0	56	18	29	21	29	1.97
78465--78816	114	3.1	112	80	7	365	37	12	9	40	1.75
79101--79143	18	2.4	18	84	7	52	65	2	9	23	1.34

Tables:   1

The End!