genome.fa.s7903.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007903.1 Hibiscus syriacus cultivar Beakdansim tig00110294_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  402018

Tables:   1   

This is table  1  of  1  ( 120 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3847--3924	37	2.1	37	92	2	131	20	12	19	47	1.82
22198--22254	29	2.0	29	100	0	114	24	7	17	50	1.70
27798--27860	13	4.5	13	78	18	72	15	44	22	17	1.86
27776--27821	18	2.6	18	96	0	83	19	52	15	13	1.75
27780--27860	31	2.6	31	88	0	117	17	45	19	17	1.85
27816--27887	8	9.4	8	74	19	73	15	37	25	22	1.93
27815--27849	18	1.9	18	94	0	61	17	42	22	17	1.88
27850--27887	7	5.1	7	90	9	58	13	34	26	26	1.93
27850--27887	15	2.5	15	100	0	76	13	34	26	26	1.93
28986--29020	18	1.9	18	88	0	52	54	0	17	28	1.43
32798--32860	13	4.5	13	78	18	72	15	44	22	17	1.86
32776--32821	18	2.6	18	96	0	83	19	52	15	13	1.75
32780--32860	31	2.6	31	88	0	117	17	45	19	17	1.85
32816--32886	7	9.4	8	76	17	64	15	36	25	22	1.93
32815--32849	18	1.9	18	94	0	61	17	42	22	17	1.88
32850--32886	7	5.1	7	96	3	65	13	32	27	27	1.94
33988--34022	18	1.9	18	88	0	52	54	0	17	28	1.43
39452--39585	52	2.6	52	85	4	173	55	2	7	34	1.40
39467--39557	25	3.5	26	70	16	73	57	2	4	36	1.31
49155--49202	24	2.0	24	95	0	87	37	14	8	39	1.76
53196--53258	27	2.5	26	87	10	87	53	1	1	42	1.19
66508--66535	3	9.3	3	100	0	56	32	0	35	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71966--72006	22	1.9	21	90	5	64	70	4	0	24	1.06
73410--73447	19	2.0	19	100	0	76	31	21	15	31	1.94
74480--74541	21	3.2	20	70	30	55	40	1	1	56	1.19
78937--78974	2	20.0	2	89	10	62	52	0	0	47	1.00
93394--93436	22	2.0	22	100	0	86	44	13	32	9	1.76
96971--97016	20	2.3	20	100	0	92	39	0	6	54	1.26
100955--101004	26	2.0	25	84	11	66	20	14	0	66	1.26
107214--107307	29	3.2	29	87	3	127	14	34	13	37	1.86
109359--109409	27	1.9	26	84	4	66	33	1	3	60	1.26
110385--110412	14	2.0	14	100	0	56	42	0	0	57	0.99
120375--120414	16	2.5	16	95	0	71	17	10	12	60	1.59
124187--124226	16	2.5	17	84	12	57	72	2	12	12	1.22
127337--127377	22	1.9	21	85	5	55	2	34	0	63	1.08
132185--132221	15	2.5	15	90	0	56	10	64	13	10	1.49
139886--140004	60	2.0	61	83	6	138	33	16	3	46	1.64
141472--141582	57	1.9	57	85	0	150	45	2	12	39	1.56
150729--151333	309	2.0	309	89	1	944	20	32	10	35	1.87
153634--153921	144	2.0	144	96	0	533	36	11	13	38	1.80
158054--158080	4	6.8	4	100	0	54	22	0	0	77	0.76
163156--163346	95	2.0	95	88	4	287	39	14	9	36	1.78
171482--171597	58	2.0	58	88	3	171	33	16	6	43	1.72
171811--171953	61	2.4	60	78	10	148	41	8	18	30	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172948--172974	2	13.5	2	100	0	54	48	0	51	0	1.00
173842--173867	13	2.0	13	100	0	52	30	15	15	38	1.88
176808--176855	22	2.1	23	85	11	64	54	8	6	31	1.55
186416--186537	23	5.8	21	68	25	64	45	0	0	52	1.12
186425--186484	22	2.6	22	86	5	75	43	1	0	55	1.10
186471--186505	18	1.9	18	88	0	52	54	0	0	45	0.99
186469--186565	23	4.3	23	69	15	78	49	0	1	49	1.07
186596--186664	19	3.6	18	71	21	52	49	1	1	47	1.19
186559--186644	27	3.1	27	71	18	70	47	1	2	48	1.22
186361--186671	54	5.9	54	69	19	135	47	1	0	49	1.17
186631--186703	23	3.1	23	82	5	76	52	2	0	45	1.15
186975--187057	34	2.4	34	78	10	87	40	13	8	37	1.75
187204--187263	6	9.8	6	72	16	52	65	0	1	33	1.03
187204--187263	13	4.9	12	71	18	52	65	0	1	33	1.03
187647--187711	30	2.2	29	83	10	78	35	0	0	64	0.94
188904--188953	27	1.9	25	88	8	73	36	4	0	60	1.16
194030--194064	18	1.9	18	94	0	61	34	2	0	62	1.10
195143--195188	18	2.6	17	89	3	65	34	4	32	28	1.77
208813--208927	60	1.9	60	83	3	151	38	14	18	28	1.90
220499--220523	3	8.3	3	100	0	50	32	0	0	68	0.90
221752--221798	16	2.9	16	77	3	58	42	21	4	31	1.72
222535--222587	24	2.2	24	100	0	106	15	32	20	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
230860--231028	90	1.9	89	84	6	225	39	8	10	41	1.70
231950--231990	21	2.0	21	85	0	55	51	0	2	46	1.14
234688--234722	18	1.9	18	88	0	52	40	20	0	40	1.52
234828--234888	23	2.7	23	92	0	104	24	27	27	19	1.99
236091--236128	20	2.0	20	89	5	60	36	10	2	50	1.51
236092--236137	20	2.2	20	84	7	56	41	13	2	43	1.55
236567--236610	21	2.1	21	86	0	61	15	27	27	29	1.96
239376--239425	18	2.8	17	80	14	57	58	2	4	36	1.29
239911--239951	6	6.8	6	85	0	55	26	14	21	36	1.93
239911--239958	18	2.7	18	90	0	78	27	14	20	37	1.92
248228--248573	111	3.1	110	91	2	532	45	13	14	26	1.81
249696--249743	23	2.1	23	84	0	60	39	16	4	39	1.68
250294--250792	249	2.0	249	99	0	989	24	18	18	38	1.93
253955--253984	9	3.3	9	95	0	51	73	0	0	26	0.84
261334--261372	17	2.4	17	91	4	62	61	5	5	28	1.39
282106--282144	10	3.9	10	86	0	60	15	43	0	41	1.46
288562--288597	17	2.1	17	94	0	63	5	19	36	38	1.75
300598--300685	44	2.0	44	100	0	176	36	15	18	29	1.92
310203--310268	33	1.9	35	84	6	91	36	4	4	54	1.41
310428--310454	14	1.9	14	100	0	54	51	11	0	37	1.37
311371--311408	19	2.0	19	100	0	76	10	5	15	68	1.36
315645--315697	21	2.5	21	81	0	70	20	22	20	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315706--315819	20	5.7	20	86	0	156	28	24	20	26	1.99
315994--316058	22	3.0	22	97	0	121	27	40	13	18	1.89
316394--316431	19	2.0	20	94	5	69	47	21	21	10	1.80
316639--317240	300	2.0	300	97	0	1125	29	17	20	32	1.96
318517--318566	18	2.8	18	100	0	100	32	20	6	42	1.76
318784--318837	20	2.7	21	85	5	67	20	14	25	38	1.91
319340--319415	21	3.6	22	77	12	63	22	38	15	23	1.93
319340--319436	21	4.7	20	75	8	61	22	36	17	23	1.95
320985--321038	20	2.7	20	80	5	65	44	27	16	11	1.82
321081--321211	20	6.8	20	79	12	141	26	20	19	32	1.97
321032--321211	94	1.9	93	84	5	238	25	21	20	32	1.97
321382--321416	18	1.9	18	94	0	61	17	2	25	54	1.57
323663--323716	24	2.2	24	90	0	81	40	18	18	22	1.91
323679--323730	24	2.2	24	82	0	59	36	21	19	23	1.95
324583--324641	20	3.0	20	87	0	82	32	15	22	30	1.94
324546--324645	40	2.5	40	80	0	110	31	17	23	29	1.96
324661--324706	21	2.2	21	92	0	74	36	19	26	17	1.94
325341--325374	14	2.3	15	90	5	52	61	0	0	38	0.96
346185--346241	2	28.5	2	100	0	114	49	0	0	50	1.00
346931--346995	21	3.0	20	73	6	58	40	1	16	41	1.58
346907--346995	42	2.1	43	83	6	110	39	1	15	43	1.54
354835--354872	3	12.7	3	100	0	76	0	34	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
360719--360759	14	2.9	14	92	0	73	7	9	26	56	1.58
361893--361930	16	2.4	16	100	0	76	7	10	23	57	1.58
373149--373291	20	7.1	20	70	18	73	46	2	1	49	1.25
373151--373321	58	3.1	58	68	16	144	48	3	1	46	1.26
376248--376337	31	2.9	32	80	11	100	38	17	1	42	1.57
378205--378248	18	2.4	18	100	0	88	29	29	31	9	1.88
382772--382815	18	2.4	18	100	0	88	29	29	31	9	1.88
389550--389583	15	2.4	15	90	9	54	38	2	17	41	1.65
393087--393122	2	18.5	2	94	5	65	52	0	0	47	1.00
397453--397587	73	1.9	72	87	1	198	21	17	19	42	1.89

Tables:   1

The End!