genome.fa.s7904.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007904.1 Hibiscus syriacus cultivar Beakdansim tig00110295_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  354395

Tables:   1   

This is table  1  of  1  ( 101 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1447--1521	29	2.5	30	78	10	91	38	18	1	41	1.59
3379--3422	18	2.4	18	100	0	88	29	29	31	9	1.88
7926--7969	18	2.4	18	100	0	88	29	29	31	9	1.88
14705--14738	15	2.4	15	90	9	54	38	2	17	41	1.65
18250--18284	2	17.5	2	100	0	70	51	0	0	48	1.00
22637--22778	74	1.9	75	88	1	214	23	16	18	41	1.90
28045--28129	33	2.7	31	90	5	127	48	4	11	35	1.61
32354--32396	18	2.4	19	80	11	54	34	0	2	62	1.08
32596--32664	35	1.9	36	94	2	122	36	15	2	44	1.62
32632--32687	24	2.3	24	96	0	103	35	14	1	48	1.54
32646--32697	24	2.2	24	89	0	77	36	9	5	48	1.60
32930--32972	20	2.0	21	86	8	61	32	9	13	44	1.76
39868--39907	21	2.0	21	85	5	55	55	0	5	40	1.22
45846--45960	60	1.9	60	84	7	153	35	18	5	40	1.73
49378--49421	21	2.1	21	86	0	61	50	15	6	27	1.70
57422--57449	2	14.0	2	100	0	56	50	0	0	50	1.00
61245--61317	18	3.9	18	78	7	92	19	19	31	30	1.96
61245--61318	38	1.9	38	88	0	112	20	18	31	29	1.97
67252--67289	18	2.1	19	85	5	51	78	2	0	18	0.86
67242--67298	26	2.2	26	81	12	64	77	5	0	17	0.95
67242--67298	25	2.2	27	81	6	64	77	5	0	17	0.95
69570--69599	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75338--75386	21	2.4	20	80	12	55	36	10	16	36	1.82
88654--88693	18	2.2	18	86	0	53	45	0	37	17	1.49
88650--88691	20	2.0	21	86	4	59	45	0	38	16	1.48
88990--89074	38	2.3	38	82	8	95	45	4	1	48	1.31
101650--101727	23	3.4	23	92	0	129	30	17	12	38	1.88
103969--104031	11	5.9	11	69	14	51	38	1	3	57	1.24
109283--109328	2	23.0	2	100	0	92	50	0	0	50	1.00
110078--110117	16	2.5	16	88	8	55	47	0	0	52	1.00
110455--110494	16	2.5	16	91	0	62	35	17	17	30	1.93
111339--111388	22	2.4	22	83	6	68	28	0	2	70	0.99
112663--112712	23	2.1	25	81	7	59	22	44	6	28	1.76
114051--114098	23	2.1	23	92	0	78	52	0	0	47	1.00
114097--114161	12	5.5	12	81	3	69	26	46	13	13	1.81
114317--114352	11	3.2	11	92	4	54	22	55	19	2	1.56
114322--114353	11	2.9	11	95	0	55	18	56	25	0	1.42
120403--120446	22	2.0	22	100	0	88	36	9	27	27	1.87
124503--124641	60	2.3	60	82	0	161	42	15	10	32	1.80
124605--124668	29	2.2	29	91	0	101	39	10	6	43	1.65
124615--124671	29	2.0	29	100	0	114	35	10	7	47	1.65
124785--124809	2	12.5	2	100	0	50	48	0	0	52	1.00
125872--126008	64	2.2	62	81	10	147	34	13	13	38	1.84
128501--128595	29	3.2	28	82	7	100	41	6	7	45	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144023--144101	3	26.0	3	71	14	56	32	2	1	63	1.16
147886--148198	53	5.9	53	86	2	414	21	27	21	29	1.99
159366--159423	31	1.9	31	85	3	82	37	12	8	41	1.73
161516--161563	23	2.1	23	100	0	96	31	29	4	35	1.76
168276--168381	31	3.4	31	100	0	212	34	24	14	26	1.93
173652--174007	193	1.8	193	98	0	694	30	17	9	42	1.81
187212--187241	2	15.5	2	93	6	53	50	0	0	50	1.00
196172--196211	20	2.1	19	90	4	62	17	15	15	52	1.75
196589--196619	2	16.0	2	93	6	55	51	0	0	48	1.00
201375--201399	6	4.2	6	100	0	50	16	0	0	84	0.63
206395--206722	30	10.9	31	82	3	291	35	4	34	26	1.77
206436--206534	15	6.6	15	70	9	76	34	4	35	26	1.75
206406--206722	60	5.3	60	79	5	336	35	4	33	26	1.77
206471--206550	15	5.3	15	72	11	74	36	6	36	21	1.79
206420--206722	120	2.5	120	84	2	410	35	4	33	26	1.78
206630--206714	15	5.7	15	69	5	55	36	3	31	28	1.74
209778--209818	22	1.9	21	85	5	55	60	9	12	17	1.57
217138--217214	36	2.2	35	90	2	118	40	23	1	35	1.63
217612--217858	130	1.9	130	91	0	404	35	14	13	36	1.86
217626--217890	130	2.0	129	81	4	300	38	13	13	34	1.84
218188--218250	28	2.3	27	78	8	63	46	1	3	49	1.27
218330--218361	16	1.9	17	93	6	57	65	6	3	25	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
228642--228675	16	2.1	16	100	0	68	14	17	23	44	1.86
231355--231384	4	7.5	4	100	0	60	23	0	0	76	0.78
237951--238043	16	5.7	16	70	18	50	44	1	1	53	1.14
238411--238446	2	18.0	2	100	0	72	0	50	0	50	1.00
243987--244011	13	1.9	13	100	0	50	32	0	0	68	0.90
243917--244032	27	4.4	26	69	11	58	42	1	4	51	1.31
258582--259104	173	3.0	173	95	0	931	32	15	23	28	1.95
270068--270116	17	2.7	18	81	6	64	32	0	4	63	1.13
276150--276198	12	4.1	12	72	0	53	48	2	0	48	1.12
276130--276201	36	2.0	36	94	0	126	47	5	0	47	1.25
276578--276608	14	2.2	14	94	0	53	48	6	19	25	1.72
279629--279673	22	2.0	22	100	0	90	20	44	8	26	1.80
281720--281768	23	2.1	23	81	11	55	51	18	14	16	1.77
281811--281865	28	2.0	28	85	0	74	32	12	21	32	1.91
289570--289598	14	2.0	15	93	6	51	34	3	6	55	1.44
290074--290173	42	2.4	41	81	3	119	34	6	15	45	1.70
291004--291081	38	2.0	39	87	2	113	20	5	8	65	1.40
291004--291114	43	2.8	38	76	13	107	22	8	8	61	1.51
291150--291309	44	3.7	43	81	6	173	24	16	5	53	1.65
291150--291309	86	1.9	84	82	8	198	24	16	5	53	1.65
291146--291325	43	4.2	43	80	10	167	25	18	5	51	1.68
293047--293097	3	17.0	3	100	0	102	66	0	33	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
296286--296385	50	2.0	51	90	2	157	17	17	13	53	1.74
298151--298260	55	2.0	54	87	1	157	41	6	11	40	1.67
305981--306033	12	4.4	13	73	21	53	11	33	37	16	1.85
305981--306033	18	2.9	18	100	0	106	11	33	37	16	1.85
312406--312448	22	2.0	22	100	0	86	32	16	9	41	1.80
316047--316128	23	3.6	23	90	6	130	28	25	26	19	1.99
317177--317212	2	18.0	2	94	0	63	52	0	0	47	1.00
324455--324507	19	2.8	19	100	0	106	22	30	16	30	1.96
332336--332382	18	2.6	18	80	10	60	42	0	4	53	1.20
336572--336605	7	4.9	7	100	0	68	44	0	0	55	0.99
336558--336604	21	2.2	21	84	0	58	51	0	2	46	1.13
336554--336597	14	3.1	14	86	0	52	54	0	4	40	1.21
350245--350302	21	2.7	21	94	2	98	32	25	15	25	1.95

Tables:   1

The End!